Multiple sequence alignment - TraesCS3B01G582600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G582600 chr3B 100.000 5807 0 0 1 5807 810626234 810620428 0.000000e+00 10724.0
1 TraesCS3B01G582600 chr3B 91.034 948 57 9 4747 5670 810598106 810597163 0.000000e+00 1254.0
2 TraesCS3B01G582600 chr3B 95.181 415 16 3 4280 4692 810598518 810598106 0.000000e+00 652.0
3 TraesCS3B01G582600 chr3B 93.525 417 25 1 3870 4284 810602625 810602209 2.300000e-173 619.0
4 TraesCS3B01G582600 chr3B 83.333 396 51 6 5170 5551 815163959 815164353 9.260000e-93 351.0
5 TraesCS3B01G582600 chr3B 77.354 393 63 17 5168 5535 140485003 140485394 5.900000e-50 209.0
6 TraesCS3B01G582600 chr3A 93.531 4313 221 29 982 5245 732915308 732911005 0.000000e+00 6366.0
7 TraesCS3B01G582600 chr3A 97.475 198 5 0 786 983 732915554 732915357 7.210000e-89 339.0
8 TraesCS3B01G582600 chr3A 77.750 400 71 7 5168 5551 705251239 705251636 4.530000e-56 230.0
9 TraesCS3B01G582600 chr3D 92.796 2443 136 19 3260 5670 603115384 603117818 0.000000e+00 3500.0
10 TraesCS3B01G582600 chr3D 92.238 2306 136 18 982 3255 603112984 603115278 0.000000e+00 3227.0
11 TraesCS3B01G582600 chr3D 93.540 1997 98 13 3260 5231 603150955 603152945 0.000000e+00 2944.0
12 TraesCS3B01G582600 chr3D 92.974 854 41 6 2420 3255 603149997 603150849 0.000000e+00 1227.0
13 TraesCS3B01G582600 chr3D 89.858 493 38 6 1675 2158 603140039 603140528 1.780000e-174 623.0
14 TraesCS3B01G582600 chr3D 91.089 404 31 1 5272 5670 603163132 603163535 5.120000e-150 542.0
15 TraesCS3B01G582600 chr3D 92.722 371 23 3 317 685 9283860 9283492 3.080000e-147 532.0
16 TraesCS3B01G582600 chr3D 94.444 270 13 1 2157 2426 603140689 603140956 1.160000e-111 414.0
17 TraesCS3B01G582600 chr3D 98.565 209 3 0 775 983 603112728 603112936 2.560000e-98 370.0
18 TraesCS3B01G582600 chr5D 87.151 716 57 22 1 687 538683090 538683799 0.000000e+00 780.0
19 TraesCS3B01G582600 chr5D 91.935 310 24 1 1 309 467450349 467450658 3.210000e-117 433.0
20 TraesCS3B01G582600 chr5D 92.105 304 23 1 1 303 51112390 51112693 1.500000e-115 427.0
21 TraesCS3B01G582600 chr4D 93.140 379 23 3 315 691 109907524 109907901 2.360000e-153 553.0
22 TraesCS3B01G582600 chr4D 92.513 374 24 3 317 688 7423105 7423476 3.080000e-147 532.0
23 TraesCS3B01G582600 chr4D 91.720 314 25 1 1 313 109907173 109907486 8.940000e-118 435.0
24 TraesCS3B01G582600 chr4D 77.411 394 73 7 5170 5550 69660750 69661140 2.720000e-53 220.0
25 TraesCS3B01G582600 chr4D 89.333 150 11 5 5663 5807 457516401 457516550 3.570000e-42 183.0
26 TraesCS3B01G582600 chr4D 100.000 28 0 0 1680 1707 449861548 449861521 1.100000e-02 52.8
27 TraesCS3B01G582600 chr4D 96.774 31 1 0 1677 1707 505186712 505186742 1.100000e-02 52.8
28 TraesCS3B01G582600 chr2D 92.147 382 26 3 315 694 57099319 57099698 2.380000e-148 536.0
29 TraesCS3B01G582600 chr2D 92.042 377 28 1 315 689 570988916 570988540 3.980000e-146 529.0
30 TraesCS3B01G582600 chr2D 94.118 34 2 0 1674 1707 599965082 599965115 1.100000e-02 52.8
31 TraesCS3B01G582600 chr4A 91.451 386 31 1 309 692 225328270 225327885 3.980000e-146 529.0
32 TraesCS3B01G582600 chr4A 92.434 304 22 1 1 303 577051531 577051834 3.210000e-117 433.0
33 TraesCS3B01G582600 chr4A 77.348 181 37 4 1616 1793 604658637 604658458 2.860000e-18 104.0
34 TraesCS3B01G582600 chr4A 76.836 177 37 4 1618 1791 703419704 703419879 4.790000e-16 97.1
35 TraesCS3B01G582600 chr4A 82.857 105 11 5 1614 1715 718596374 718596474 2.880000e-13 87.9
36 TraesCS3B01G582600 chr7A 92.246 374 25 3 317 688 19987608 19987237 1.430000e-145 527.0
37 TraesCS3B01G582600 chr6B 91.451 386 28 4 309 691 30069359 30069742 5.150000e-145 525.0
38 TraesCS3B01G582600 chr6B 82.750 400 52 6 5168 5551 705522321 705521923 2.000000e-89 340.0
39 TraesCS3B01G582600 chr6B 79.208 404 68 8 5168 5559 561646154 561645755 3.450000e-67 267.0
40 TraesCS3B01G582600 chr6B 76.543 405 79 9 5170 5559 703665382 703664979 2.120000e-49 207.0
41 TraesCS3B01G582600 chr6B 91.367 139 10 2 5671 5807 714491021 714491159 7.680000e-44 189.0
42 TraesCS3B01G582600 chr6B 77.095 179 37 3 1616 1791 643500870 643500693 3.700000e-17 100.0
43 TraesCS3B01G582600 chr6B 100.000 28 0 0 5556 5583 159298256 159298283 1.100000e-02 52.8
44 TraesCS3B01G582600 chr2B 92.258 310 23 1 1 309 61603587 61603896 6.910000e-119 438.0
45 TraesCS3B01G582600 chr2B 83.186 113 18 1 5168 5280 75720154 75720043 1.030000e-17 102.0
46 TraesCS3B01G582600 chr1D 91.909 309 23 2 3 309 491984337 491984029 1.160000e-116 431.0
47 TraesCS3B01G582600 chr1D 78.701 385 61 13 5168 5533 1441024 1441406 2.700000e-58 237.0
48 TraesCS3B01G582600 chr1D 96.774 31 1 0 1677 1707 265137509 265137539 1.100000e-02 52.8
49 TraesCS3B01G582600 chrUn 92.105 304 23 1 1 303 19795274 19795577 1.500000e-115 427.0
50 TraesCS3B01G582600 chrUn 91.429 140 10 2 5670 5807 46246479 46246340 2.140000e-44 191.0
51 TraesCS3B01G582600 chrUn 100.000 30 0 0 1680 1709 8359855 8359826 8.130000e-04 56.5
52 TraesCS3B01G582600 chrUn 96.970 33 1 0 1677 1709 150117875 150117907 8.130000e-04 56.5
53 TraesCS3B01G582600 chrUn 96.774 31 1 0 1677 1707 474789536 474789566 1.100000e-02 52.8
54 TraesCS3B01G582600 chr7D 91.613 310 25 1 1 309 544623811 544623502 1.500000e-115 427.0
55 TraesCS3B01G582600 chr7D 92.806 139 9 1 5670 5807 66483322 66483184 3.550000e-47 200.0
56 TraesCS3B01G582600 chr7D 91.367 139 10 2 5671 5807 60488650 60488788 7.680000e-44 189.0
57 TraesCS3B01G582600 chr7D 91.367 139 10 2 5671 5807 109317705 109317843 7.680000e-44 189.0
58 TraesCS3B01G582600 chr6A 91.613 310 25 1 1 309 70929369 70929060 1.500000e-115 427.0
59 TraesCS3B01G582600 chr6A 78.325 406 62 15 5167 5552 2055614 2055215 7.520000e-59 239.0
60 TraesCS3B01G582600 chr6A 77.586 174 35 4 1615 1785 18892175 18892347 1.030000e-17 102.0
61 TraesCS3B01G582600 chr6A 76.536 179 38 4 1616 1791 462225028 462224851 1.720000e-15 95.3
62 TraesCS3B01G582600 chr5B 83.805 389 46 8 5168 5540 496602746 496603133 2.570000e-93 353.0
63 TraesCS3B01G582600 chr7B 79.545 396 65 8 5168 5550 741992710 741993102 9.590000e-68 268.0
64 TraesCS3B01G582600 chr1B 91.367 139 10 2 5671 5807 658443493 658443631 7.680000e-44 189.0
65 TraesCS3B01G582600 chr1B 87.500 96 12 0 1616 1711 455146186 455146091 1.710000e-20 111.0
66 TraesCS3B01G582600 chr1B 76.804 194 33 10 1602 1791 4030974 4030789 1.330000e-16 99.0
67 TraesCS3B01G582600 chr5A 91.304 138 10 2 5672 5807 694543952 694544089 2.760000e-43 187.0
68 TraesCS3B01G582600 chr5A 90.714 140 11 2 5670 5807 694522219 694522358 9.940000e-43 185.0
69 TraesCS3B01G582600 chr5A 85.714 91 13 0 1615 1705 652908030 652907940 4.790000e-16 97.1
70 TraesCS3B01G582600 chr5A 96.774 31 1 0 5553 5583 38531016 38531046 1.100000e-02 52.8
71 TraesCS3B01G582600 chr1A 75.978 179 39 4 1616 1791 41152103 41152280 8.010000e-14 89.8
72 TraesCS3B01G582600 chr1A 82.178 101 15 3 1616 1715 547899920 547899822 3.730000e-12 84.2
73 TraesCS3B01G582600 chr6D 96.774 31 1 0 1677 1707 439765131 439765161 1.100000e-02 52.8
74 TraesCS3B01G582600 chr6D 100.000 28 0 0 1680 1707 455680287 455680260 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G582600 chr3B 810620428 810626234 5806 True 10724.000000 10724 100.000000 1 5807 1 chr3B.!!$R1 5806
1 TraesCS3B01G582600 chr3B 810597163 810602625 5462 True 841.666667 1254 93.246667 3870 5670 3 chr3B.!!$R2 1800
2 TraesCS3B01G582600 chr3A 732911005 732915554 4549 True 3352.500000 6366 95.503000 786 5245 2 chr3A.!!$R1 4459
3 TraesCS3B01G582600 chr3D 603112728 603117818 5090 False 2365.666667 3500 94.533000 775 5670 3 chr3D.!!$F2 4895
4 TraesCS3B01G582600 chr3D 603149997 603152945 2948 False 2085.500000 2944 93.257000 2420 5231 2 chr3D.!!$F4 2811
5 TraesCS3B01G582600 chr3D 603140039 603140956 917 False 518.500000 623 92.151000 1675 2426 2 chr3D.!!$F3 751
6 TraesCS3B01G582600 chr5D 538683090 538683799 709 False 780.000000 780 87.151000 1 687 1 chr5D.!!$F3 686
7 TraesCS3B01G582600 chr4D 109907173 109907901 728 False 494.000000 553 92.430000 1 691 2 chr4D.!!$F5 690

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
555 595 0.033642 GGGGATAGGAGTAGCAACGC 59.966 60.0 0.00 0.00 0.00 4.84 F
743 784 0.106519 ATGGCTGGACTAATGTGGGC 60.107 55.0 0.00 0.00 0.00 5.36 F
1807 1902 0.308684 GCACACCATGGATGCATACG 59.691 55.0 29.25 8.81 39.23 3.06 F
2675 2950 1.026584 GGCTCCGAGAGAGTAGAACC 58.973 60.0 0.00 0.00 45.21 3.62 F
3337 3833 0.978667 TGGTTGCCGGCTCCAGTATA 60.979 55.0 30.01 14.35 0.00 1.47 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2044 2148 0.539986 AAAGCACCCCGTATCGACAT 59.460 50.000 0.0 0.0 0.0 3.06 R
2054 2158 1.940613 CAGCGTAGAATAAAGCACCCC 59.059 52.381 0.0 0.0 0.0 4.95 R
2874 3150 1.063070 TGGACCCCTTTGCAGTACCA 61.063 55.000 0.0 0.0 0.0 3.25 R
3809 4309 0.540365 CCCATGCCACAAGTCCAGTT 60.540 55.000 0.0 0.0 0.0 3.16 R
4824 9028 2.208326 AAGCAACAAAAGAACAGCCG 57.792 45.000 0.0 0.0 0.0 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 1.071299 TGATGGCAACGCTGTCTGT 59.929 52.632 0.00 0.00 42.51 3.41
51 52 1.070289 GTGTCGTTCCCTTCCTGAAGT 59.930 52.381 6.19 0.00 36.72 3.01
60 61 0.807667 CTTCCTGAAGTCATCGCCGG 60.808 60.000 0.00 0.00 33.87 6.13
96 97 0.913205 ACTCTCTGCTACCTCCGAGA 59.087 55.000 0.00 0.00 0.00 4.04
110 112 3.556999 CTCCGAGAGAACCCTAGATCAA 58.443 50.000 0.00 0.00 0.00 2.57
133 135 1.762522 ATCGGATGATGGCGGCTCTT 61.763 55.000 11.43 3.61 32.21 2.85
148 150 1.814248 GCTCTTTGGTGTCGTTTCCCT 60.814 52.381 0.00 0.00 0.00 4.20
177 179 0.798776 GTCATTCTTGGAGGTGCACG 59.201 55.000 11.45 0.00 0.00 5.34
230 232 0.674581 TGGAGCGGTGCTTCATCTTG 60.675 55.000 7.84 0.00 39.52 3.02
244 246 3.423749 TCATCTTGCACATTGATGGTGT 58.576 40.909 14.24 0.00 38.38 4.16
290 294 3.396911 GACTCGGCGTCTGATGCGA 62.397 63.158 15.13 13.94 39.61 5.10
303 307 1.035923 GATGCGAGGAGATGGACTCA 58.964 55.000 0.00 0.00 46.54 3.41
309 313 0.323816 AGGAGATGGACTCACGCAGA 60.324 55.000 0.00 0.00 46.54 4.26
313 317 0.176680 GATGGACTCACGCAGATGGT 59.823 55.000 0.00 0.00 0.00 3.55
345 385 1.629043 AGGTCGGTGCTTCAGTTCTA 58.371 50.000 0.00 0.00 0.00 2.10
360 400 3.066064 CAGTTCTACTCTGAGGATGGACG 59.934 52.174 9.85 0.00 35.20 4.79
376 416 2.105806 GACGGAGGGATGATGGAGGC 62.106 65.000 0.00 0.00 0.00 4.70
382 422 2.029666 GATGATGGAGGCGACGGG 59.970 66.667 0.00 0.00 0.00 5.28
463 503 2.777536 TGGCTTGGATGAGACACCT 58.222 52.632 0.00 0.00 27.08 4.00
471 511 5.551233 CTTGGATGAGACACCTGACTTTAA 58.449 41.667 0.00 0.00 0.00 1.52
484 524 7.069455 ACACCTGACTTTAAATGTTAGGCTTTT 59.931 33.333 19.39 0.00 42.68 2.27
500 540 3.304391 GGCTTTTGTGCGATGTCTGTTTA 60.304 43.478 0.00 0.00 0.00 2.01
521 561 1.342174 GTATTAGGCCCGGACATTCGA 59.658 52.381 0.73 0.00 0.00 3.71
555 595 0.033642 GGGGATAGGAGTAGCAACGC 59.966 60.000 0.00 0.00 0.00 4.84
663 704 0.466189 CAAATGCAGAGGCCGGGTAT 60.466 55.000 2.18 0.00 40.13 2.73
664 705 0.466189 AAATGCAGAGGCCGGGTATG 60.466 55.000 2.18 0.00 40.13 2.39
677 718 2.238898 CCGGGTATGTCCTCCTTTTCTT 59.761 50.000 0.00 0.00 36.25 2.52
680 721 5.116882 CGGGTATGTCCTCCTTTTCTTAAG 58.883 45.833 0.00 0.00 36.25 1.85
704 745 3.740044 AAAGTAATTGGTGCATCGACG 57.260 42.857 0.00 0.00 0.00 5.12
705 746 1.651987 AGTAATTGGTGCATCGACGG 58.348 50.000 0.00 0.00 0.00 4.79
706 747 1.066430 AGTAATTGGTGCATCGACGGT 60.066 47.619 0.00 0.00 0.00 4.83
707 748 2.166870 AGTAATTGGTGCATCGACGGTA 59.833 45.455 0.00 0.00 0.00 4.02
708 749 2.325583 AATTGGTGCATCGACGGTAT 57.674 45.000 0.00 0.00 0.00 2.73
709 750 1.581934 ATTGGTGCATCGACGGTATG 58.418 50.000 0.00 0.00 0.00 2.39
713 754 4.118480 GCATCGACGGTATGCCAA 57.882 55.556 9.70 0.00 43.17 4.52
714 755 2.616969 GCATCGACGGTATGCCAAT 58.383 52.632 9.70 0.00 43.17 3.16
715 756 1.790755 GCATCGACGGTATGCCAATA 58.209 50.000 9.70 0.00 43.17 1.90
716 757 2.139917 GCATCGACGGTATGCCAATAA 58.860 47.619 9.70 0.00 43.17 1.40
717 758 2.742053 GCATCGACGGTATGCCAATAAT 59.258 45.455 9.70 0.00 43.17 1.28
718 759 3.930229 GCATCGACGGTATGCCAATAATA 59.070 43.478 9.70 0.00 43.17 0.98
719 760 4.032900 GCATCGACGGTATGCCAATAATAG 59.967 45.833 9.70 0.00 43.17 1.73
720 761 4.859304 TCGACGGTATGCCAATAATAGT 57.141 40.909 0.00 0.00 34.09 2.12
721 762 4.552355 TCGACGGTATGCCAATAATAGTG 58.448 43.478 0.00 0.00 34.09 2.74
722 763 4.278919 TCGACGGTATGCCAATAATAGTGA 59.721 41.667 0.00 0.00 34.09 3.41
723 764 4.621460 CGACGGTATGCCAATAATAGTGAG 59.379 45.833 0.00 0.00 34.09 3.51
724 765 5.564063 CGACGGTATGCCAATAATAGTGAGA 60.564 44.000 0.00 0.00 34.09 3.27
725 766 6.360370 ACGGTATGCCAATAATAGTGAGAT 57.640 37.500 0.00 0.00 34.09 2.75
726 767 6.166279 ACGGTATGCCAATAATAGTGAGATG 58.834 40.000 0.00 0.00 34.09 2.90
727 768 5.582269 CGGTATGCCAATAATAGTGAGATGG 59.418 44.000 0.00 0.00 34.09 3.51
732 773 5.233083 CCAATAATAGTGAGATGGCTGGA 57.767 43.478 0.00 0.00 0.00 3.86
733 774 4.999950 CCAATAATAGTGAGATGGCTGGAC 59.000 45.833 0.00 0.00 0.00 4.02
734 775 5.221803 CCAATAATAGTGAGATGGCTGGACT 60.222 44.000 0.00 0.00 0.00 3.85
735 776 6.014242 CCAATAATAGTGAGATGGCTGGACTA 60.014 42.308 0.00 0.00 0.00 2.59
736 777 7.445121 CAATAATAGTGAGATGGCTGGACTAA 58.555 38.462 0.00 0.00 0.00 2.24
737 778 7.805083 ATAATAGTGAGATGGCTGGACTAAT 57.195 36.000 0.00 0.00 0.00 1.73
738 779 3.834489 AGTGAGATGGCTGGACTAATG 57.166 47.619 0.00 0.00 0.00 1.90
739 780 3.110705 AGTGAGATGGCTGGACTAATGT 58.889 45.455 0.00 0.00 0.00 2.71
740 781 3.118482 AGTGAGATGGCTGGACTAATGTG 60.118 47.826 0.00 0.00 0.00 3.21
741 782 2.171237 TGAGATGGCTGGACTAATGTGG 59.829 50.000 0.00 0.00 0.00 4.17
742 783 1.492176 AGATGGCTGGACTAATGTGGG 59.508 52.381 0.00 0.00 0.00 4.61
743 784 0.106519 ATGGCTGGACTAATGTGGGC 60.107 55.000 0.00 0.00 0.00 5.36
744 785 1.207488 TGGCTGGACTAATGTGGGCT 61.207 55.000 0.00 0.00 0.00 5.19
745 786 0.837272 GGCTGGACTAATGTGGGCTA 59.163 55.000 0.00 0.00 0.00 3.93
746 787 1.421646 GGCTGGACTAATGTGGGCTAT 59.578 52.381 0.00 0.00 0.00 2.97
747 788 2.498167 GCTGGACTAATGTGGGCTATG 58.502 52.381 0.00 0.00 0.00 2.23
748 789 2.158755 GCTGGACTAATGTGGGCTATGT 60.159 50.000 0.00 0.00 0.00 2.29
749 790 3.685550 GCTGGACTAATGTGGGCTATGTT 60.686 47.826 0.00 0.00 0.00 2.71
750 791 4.526970 CTGGACTAATGTGGGCTATGTTT 58.473 43.478 0.00 0.00 0.00 2.83
751 792 4.269183 TGGACTAATGTGGGCTATGTTTG 58.731 43.478 0.00 0.00 0.00 2.93
752 793 3.066760 GGACTAATGTGGGCTATGTTTGC 59.933 47.826 0.00 0.00 0.00 3.68
753 794 3.947834 GACTAATGTGGGCTATGTTTGCT 59.052 43.478 0.00 0.00 0.00 3.91
754 795 5.110814 ACTAATGTGGGCTATGTTTGCTA 57.889 39.130 0.00 0.00 0.00 3.49
755 796 5.126067 ACTAATGTGGGCTATGTTTGCTAG 58.874 41.667 0.00 0.00 0.00 3.42
756 797 3.652057 ATGTGGGCTATGTTTGCTAGT 57.348 42.857 0.00 0.00 0.00 2.57
757 798 3.433306 TGTGGGCTATGTTTGCTAGTT 57.567 42.857 0.00 0.00 0.00 2.24
758 799 3.343617 TGTGGGCTATGTTTGCTAGTTC 58.656 45.455 0.00 0.00 0.00 3.01
759 800 3.244735 TGTGGGCTATGTTTGCTAGTTCA 60.245 43.478 0.00 0.00 0.00 3.18
760 801 3.375299 GTGGGCTATGTTTGCTAGTTCAG 59.625 47.826 0.00 0.00 0.00 3.02
761 802 3.263170 TGGGCTATGTTTGCTAGTTCAGA 59.737 43.478 0.00 0.00 0.00 3.27
762 803 3.873952 GGGCTATGTTTGCTAGTTCAGAG 59.126 47.826 0.00 0.00 0.00 3.35
763 804 3.873952 GGCTATGTTTGCTAGTTCAGAGG 59.126 47.826 0.00 0.00 0.00 3.69
764 805 3.873952 GCTATGTTTGCTAGTTCAGAGGG 59.126 47.826 0.00 0.00 0.00 4.30
765 806 4.624125 GCTATGTTTGCTAGTTCAGAGGGT 60.624 45.833 0.00 0.00 0.00 4.34
766 807 3.857157 TGTTTGCTAGTTCAGAGGGTT 57.143 42.857 0.00 0.00 0.00 4.11
767 808 4.164843 TGTTTGCTAGTTCAGAGGGTTT 57.835 40.909 0.00 0.00 0.00 3.27
768 809 4.134563 TGTTTGCTAGTTCAGAGGGTTTC 58.865 43.478 0.00 0.00 0.00 2.78
769 810 4.141482 TGTTTGCTAGTTCAGAGGGTTTCT 60.141 41.667 0.00 0.00 36.25 2.52
770 811 3.963428 TGCTAGTTCAGAGGGTTTCTC 57.037 47.619 0.00 0.00 42.75 2.87
771 812 2.567615 TGCTAGTTCAGAGGGTTTCTCC 59.432 50.000 0.00 0.00 43.44 3.71
772 813 2.567615 GCTAGTTCAGAGGGTTTCTCCA 59.432 50.000 0.00 0.00 43.44 3.86
773 814 3.008049 GCTAGTTCAGAGGGTTTCTCCAA 59.992 47.826 0.00 0.00 43.44 3.53
774 815 4.323868 GCTAGTTCAGAGGGTTTCTCCAAT 60.324 45.833 0.00 0.00 43.44 3.16
775 816 5.104900 GCTAGTTCAGAGGGTTTCTCCAATA 60.105 44.000 0.00 0.00 43.44 1.90
776 817 5.167303 AGTTCAGAGGGTTTCTCCAATAC 57.833 43.478 0.00 0.00 43.44 1.89
777 818 4.597507 AGTTCAGAGGGTTTCTCCAATACA 59.402 41.667 0.00 0.00 43.44 2.29
778 819 5.251700 AGTTCAGAGGGTTTCTCCAATACAT 59.748 40.000 0.00 0.00 43.44 2.29
779 820 5.779241 TCAGAGGGTTTCTCCAATACATT 57.221 39.130 0.00 0.00 43.44 2.71
780 821 6.884472 TCAGAGGGTTTCTCCAATACATTA 57.116 37.500 0.00 0.00 43.44 1.90
781 822 7.451731 TCAGAGGGTTTCTCCAATACATTAT 57.548 36.000 0.00 0.00 43.44 1.28
782 823 7.872138 TCAGAGGGTTTCTCCAATACATTATT 58.128 34.615 0.00 0.00 43.44 1.40
841 882 0.548031 GATGATTGCCTGGAGTCCCA 59.452 55.000 6.74 0.00 40.95 4.37
1008 1099 3.424829 GCACCATAGACACAATGAACACG 60.425 47.826 0.00 0.00 0.00 4.49
1152 1243 0.340208 ACCTCTACCTCTTCAGGGGG 59.660 60.000 0.00 0.00 45.53 5.40
1278 1369 2.125912 GAGTGTCTCGGCGTGCAT 60.126 61.111 6.85 0.00 0.00 3.96
1296 1387 2.671914 GCATGACATCGTGTTTGCCAAT 60.672 45.455 0.00 0.00 35.26 3.16
1297 1388 3.427368 GCATGACATCGTGTTTGCCAATA 60.427 43.478 0.00 0.00 35.26 1.90
1332 1423 2.564947 GACCGGCAAGATCATCTCCTAT 59.435 50.000 0.00 0.00 0.00 2.57
1420 1511 3.138930 GAGCTCCTATCGGCGCACA 62.139 63.158 10.83 0.00 43.52 4.57
1661 1752 2.915463 GACGGATTATTCTATGCCGACG 59.085 50.000 0.00 0.00 44.43 5.12
1678 1769 2.915137 GGCTTTTTGTCGGGGCCA 60.915 61.111 4.39 0.00 42.08 5.36
1680 1771 1.215382 GCTTTTTGTCGGGGCCATC 59.785 57.895 4.39 0.00 0.00 3.51
1720 1812 1.945354 GACGGCCTGGAGAATCGTCA 61.945 60.000 0.00 0.00 46.23 4.35
1737 1829 2.030893 CGTCAGCAAAGAAAAGCCATCA 60.031 45.455 0.00 0.00 0.00 3.07
1751 1843 1.605710 GCCATCAGCACACCATCATAC 59.394 52.381 0.00 0.00 42.97 2.39
1771 1863 4.108902 GCTGATGGCAATCGTCGA 57.891 55.556 0.00 0.00 41.35 4.20
1785 1877 1.480219 CGTCGACATAGAAAGGCCGC 61.480 60.000 17.16 0.00 0.00 6.53
1807 1902 0.308684 GCACACCATGGATGCATACG 59.691 55.000 29.25 8.81 39.23 3.06
1849 1945 8.318412 TCCGACCATACATAGCATACAAAATAT 58.682 33.333 0.00 0.00 0.00 1.28
1967 2071 3.863142 TCTAGTTTTGTAGTCCTCGCC 57.137 47.619 0.00 0.00 0.00 5.54
2054 2158 8.729529 ATCACTACAGAAAATATGTCGATACG 57.270 34.615 0.00 0.00 32.02 3.06
2073 2177 1.472728 CGGGGTGCTTTATTCTACGCT 60.473 52.381 0.00 0.00 0.00 5.07
2095 2199 2.028130 AGTTCTAGAGCACGGGATCTG 58.972 52.381 17.35 5.85 40.65 2.90
2114 2218 3.188460 TCTGAGCGACAACAATTTAAGCC 59.812 43.478 0.00 0.00 0.00 4.35
2120 2224 3.906008 CGACAACAATTTAAGCCGAGTTG 59.094 43.478 0.00 0.00 41.37 3.16
2199 2472 1.376037 CCTCGAGGCTCCAAACACC 60.376 63.158 20.67 0.00 0.00 4.16
2227 2500 6.655425 GGTTCTTGTTGCCTTAGAAACTAGAT 59.345 38.462 0.00 0.00 37.76 1.98
2482 2757 6.560253 AAGCGACTTGATTTTGTAACTGAT 57.440 33.333 0.00 0.00 0.00 2.90
2555 2830 2.498481 CCAGTGGTTTAGGACGATGGTA 59.502 50.000 0.00 0.00 0.00 3.25
2675 2950 1.026584 GGCTCCGAGAGAGTAGAACC 58.973 60.000 0.00 0.00 45.21 3.62
2687 2962 3.128349 GAGTAGAACCAAGTTCGTGCAA 58.872 45.455 0.00 0.00 45.96 4.08
2874 3150 3.558931 TCAGTGGCATATTTGGACGAT 57.441 42.857 0.00 0.00 0.00 3.73
2897 3173 2.442236 ACTGCAAAGGGGTCCATATG 57.558 50.000 0.00 0.00 0.00 1.78
2905 3181 6.127196 TGCAAAGGGGTCCATATGATTTAAAC 60.127 38.462 3.65 0.00 0.00 2.01
2931 3207 4.476479 AGGCCTTAAGATCTGGATCAAGTT 59.524 41.667 0.00 0.00 40.22 2.66
2950 3242 4.092279 AGTTCCCCTTAGGTGTGTAGTAC 58.908 47.826 0.00 0.00 36.75 2.73
2975 3267 7.934120 ACTAGATATTTAACAGTGAAGGATGCC 59.066 37.037 0.00 0.00 0.00 4.40
2986 3278 3.382546 GTGAAGGATGCCATTACAATGCT 59.617 43.478 0.00 0.00 35.08 3.79
2992 3284 5.242393 AGGATGCCATTACAATGCTCATTAC 59.758 40.000 0.00 1.76 35.08 1.89
3175 3468 5.585047 ACCGCTATCTAAATTGAAACCAGTC 59.415 40.000 0.00 0.00 0.00 3.51
3189 3482 5.823570 TGAAACCAGTCAAAAGGTATTCGAA 59.176 36.000 0.00 0.00 37.07 3.71
3337 3833 0.978667 TGGTTGCCGGCTCCAGTATA 60.979 55.000 30.01 14.35 0.00 1.47
3504 4001 8.646900 TGTTGTTGGATCTACATATGCTATACA 58.353 33.333 1.58 0.00 0.00 2.29
3564 4061 4.909284 ACTCCCACTCCCCTTTTCTATAT 58.091 43.478 0.00 0.00 0.00 0.86
3565 4062 4.660771 ACTCCCACTCCCCTTTTCTATATG 59.339 45.833 0.00 0.00 0.00 1.78
3566 4063 4.641868 TCCCACTCCCCTTTTCTATATGT 58.358 43.478 0.00 0.00 0.00 2.29
3668 4168 1.592543 CTGTTACAATGCGCGCATCTA 59.407 47.619 43.06 30.97 35.31 1.98
3831 4331 0.539438 TGGACTTGTGGCATGGGTTC 60.539 55.000 0.00 0.00 0.00 3.62
4246 4751 4.292178 GAGGCGGCCGATCTCCTG 62.292 72.222 33.48 0.00 0.00 3.86
4527 8731 4.920640 TGAGTAGCATAGACCTTACTGC 57.079 45.455 0.00 0.00 34.85 4.40
4533 8737 4.911390 AGCATAGACCTTACTGCTTTGTT 58.089 39.130 0.00 0.00 42.03 2.83
5041 9245 8.458843 GTGTTCCATACAAAGTTGTGCTATATT 58.541 33.333 6.94 0.00 42.31 1.28
5131 9342 4.245660 TGTTCTATTTGACTCTTCGGCTG 58.754 43.478 0.00 0.00 0.00 4.85
5176 9399 4.988598 AACACGGTGGCCTCTGCG 62.989 66.667 13.64 6.83 38.85 5.18
5355 9579 0.033366 CTCATGACACCACACGGACA 59.967 55.000 0.00 0.00 35.59 4.02
5432 9656 1.151450 GCCGGATCCAACCATCCAT 59.849 57.895 13.41 0.00 42.50 3.41
5448 9672 4.461781 CCATCCATGGCCAAAATCTAGATC 59.538 45.833 10.96 0.00 41.75 2.75
5523 9752 4.219507 ACGTAAAACCATCATCATTGCCAA 59.780 37.500 0.00 0.00 0.00 4.52
5614 9843 2.133553 CTAACATGCGCCTCTCTCATG 58.866 52.381 4.18 1.97 42.27 3.07
5626 9855 3.007290 CCTCTCTCATGTGAGACAACCAA 59.993 47.826 20.73 2.37 45.48 3.67
5640 9869 6.096705 TGAGACAACCAACATCAAAACAGATT 59.903 34.615 0.00 0.00 0.00 2.40
5641 9870 6.275335 AGACAACCAACATCAAAACAGATTG 58.725 36.000 0.00 0.00 0.00 2.67
5664 9893 4.009675 GACATGCAAATTACCTCACCTCA 58.990 43.478 0.00 0.00 0.00 3.86
5670 9899 1.972588 ATTACCTCACCTCAAGGGCT 58.027 50.000 0.29 0.00 38.29 5.19
5671 9900 1.742308 TTACCTCACCTCAAGGGCTT 58.258 50.000 0.29 0.00 38.29 4.35
5672 9901 1.742308 TACCTCACCTCAAGGGCTTT 58.258 50.000 0.29 0.00 38.29 3.51
5673 9902 0.853530 ACCTCACCTCAAGGGCTTTT 59.146 50.000 0.29 0.00 38.29 2.27
5674 9903 1.217942 ACCTCACCTCAAGGGCTTTTT 59.782 47.619 0.29 0.00 38.29 1.94
5697 9926 7.478520 TTTTTAAACGAAGTCTCAAGGAGAG 57.521 36.000 0.00 0.00 45.00 3.20
5698 9927 2.734276 AACGAAGTCTCAAGGAGAGC 57.266 50.000 0.00 0.00 45.00 4.09
5699 9928 0.892063 ACGAAGTCTCAAGGAGAGCC 59.108 55.000 0.00 0.00 44.35 4.70
5700 9929 0.174617 CGAAGTCTCAAGGAGAGCCC 59.825 60.000 0.00 0.00 44.35 5.19
5701 9930 0.174617 GAAGTCTCAAGGAGAGCCCG 59.825 60.000 0.00 0.00 44.35 6.13
5702 9931 0.251832 AAGTCTCAAGGAGAGCCCGA 60.252 55.000 0.00 0.00 44.35 5.14
5703 9932 0.968393 AGTCTCAAGGAGAGCCCGAC 60.968 60.000 0.00 0.00 44.35 4.79
5704 9933 0.968393 GTCTCAAGGAGAGCCCGACT 60.968 60.000 0.00 0.00 44.35 4.18
5705 9934 0.251832 TCTCAAGGAGAGCCCGACTT 60.252 55.000 0.00 0.00 44.35 3.01
5706 9935 0.610687 CTCAAGGAGAGCCCGACTTT 59.389 55.000 0.00 0.00 40.87 2.66
5707 9936 1.825474 CTCAAGGAGAGCCCGACTTTA 59.175 52.381 0.00 0.00 40.87 1.85
5708 9937 2.233922 CTCAAGGAGAGCCCGACTTTAA 59.766 50.000 0.00 0.00 40.87 1.52
5709 9938 2.635915 TCAAGGAGAGCCCGACTTTAAA 59.364 45.455 0.00 0.00 40.87 1.52
5710 9939 3.263425 TCAAGGAGAGCCCGACTTTAAAT 59.737 43.478 0.00 0.00 40.87 1.40
5711 9940 4.010349 CAAGGAGAGCCCGACTTTAAATT 58.990 43.478 0.00 0.00 40.87 1.82
5712 9941 5.046159 TCAAGGAGAGCCCGACTTTAAATTA 60.046 40.000 0.00 0.00 40.87 1.40
5713 9942 5.431179 AGGAGAGCCCGACTTTAAATTAA 57.569 39.130 0.00 0.00 40.87 1.40
5714 9943 5.183969 AGGAGAGCCCGACTTTAAATTAAC 58.816 41.667 0.00 0.00 40.87 2.01
5715 9944 4.939439 GGAGAGCCCGACTTTAAATTAACA 59.061 41.667 0.00 0.00 0.00 2.41
5716 9945 5.413523 GGAGAGCCCGACTTTAAATTAACAA 59.586 40.000 0.00 0.00 0.00 2.83
5717 9946 6.072342 GGAGAGCCCGACTTTAAATTAACAAA 60.072 38.462 0.00 0.00 0.00 2.83
5718 9947 6.909909 AGAGCCCGACTTTAAATTAACAAAG 58.090 36.000 0.00 5.86 37.69 2.77
5719 9948 5.466819 AGCCCGACTTTAAATTAACAAAGC 58.533 37.500 6.90 0.00 35.58 3.51
5720 9949 4.624024 GCCCGACTTTAAATTAACAAAGCC 59.376 41.667 6.90 0.00 35.58 4.35
5721 9950 4.854839 CCCGACTTTAAATTAACAAAGCCG 59.145 41.667 8.08 8.08 37.37 5.52
5722 9951 5.454520 CCGACTTTAAATTAACAAAGCCGT 58.545 37.500 11.81 0.00 36.34 5.68
5723 9952 5.566395 CCGACTTTAAATTAACAAAGCCGTC 59.434 40.000 11.81 0.00 36.34 4.79
5724 9953 6.137415 CGACTTTAAATTAACAAAGCCGTCA 58.863 36.000 7.29 0.00 34.31 4.35
5725 9954 6.633634 CGACTTTAAATTAACAAAGCCGTCAA 59.366 34.615 7.29 0.00 34.31 3.18
5726 9955 7.356962 CGACTTTAAATTAACAAAGCCGTCAAC 60.357 37.037 7.29 0.00 34.31 3.18
5727 9956 6.698329 ACTTTAAATTAACAAAGCCGTCAACC 59.302 34.615 6.90 0.00 35.58 3.77
5728 9957 2.981400 ATTAACAAAGCCGTCAACCG 57.019 45.000 0.00 0.00 0.00 4.44
5737 9966 2.046314 CGTCAACCGGCCAGGATT 60.046 61.111 18.74 7.79 45.00 3.01
5738 9967 1.219664 CGTCAACCGGCCAGGATTA 59.780 57.895 18.74 0.00 45.00 1.75
5739 9968 1.087771 CGTCAACCGGCCAGGATTAC 61.088 60.000 18.74 8.83 45.00 1.89
5740 9969 0.035820 GTCAACCGGCCAGGATTACA 60.036 55.000 18.74 0.00 45.00 2.41
5741 9970 0.035820 TCAACCGGCCAGGATTACAC 60.036 55.000 18.74 0.00 45.00 2.90
5742 9971 0.322098 CAACCGGCCAGGATTACACA 60.322 55.000 18.74 0.00 45.00 3.72
5743 9972 0.402504 AACCGGCCAGGATTACACAA 59.597 50.000 18.74 0.00 45.00 3.33
5744 9973 0.035439 ACCGGCCAGGATTACACAAG 60.035 55.000 18.74 0.00 45.00 3.16
5745 9974 0.748005 CCGGCCAGGATTACACAAGG 60.748 60.000 2.24 0.00 45.00 3.61
5746 9975 1.376609 CGGCCAGGATTACACAAGGC 61.377 60.000 2.24 0.00 41.29 4.35
5747 9976 2.493547 GCCAGGATTACACAAGGCC 58.506 57.895 0.00 0.00 36.17 5.19
5748 9977 0.323360 GCCAGGATTACACAAGGCCA 60.323 55.000 5.01 0.00 36.17 5.36
5749 9978 1.463674 CCAGGATTACACAAGGCCAC 58.536 55.000 5.01 0.00 0.00 5.01
5750 9979 1.463674 CAGGATTACACAAGGCCACC 58.536 55.000 5.01 0.00 0.00 4.61
5751 9980 1.072266 AGGATTACACAAGGCCACCA 58.928 50.000 5.01 0.00 0.00 4.17
5752 9981 1.427368 AGGATTACACAAGGCCACCAA 59.573 47.619 5.01 0.00 0.00 3.67
5753 9982 1.818674 GGATTACACAAGGCCACCAAG 59.181 52.381 5.01 0.00 0.00 3.61
5754 9983 1.202348 GATTACACAAGGCCACCAAGC 59.798 52.381 5.01 0.00 0.00 4.01
5755 9984 0.106469 TTACACAAGGCCACCAAGCA 60.106 50.000 5.01 0.00 0.00 3.91
5756 9985 0.106469 TACACAAGGCCACCAAGCAA 60.106 50.000 5.01 0.00 0.00 3.91
5757 9986 1.364901 CACAAGGCCACCAAGCAAG 59.635 57.895 5.01 0.00 0.00 4.01
5758 9987 1.108727 CACAAGGCCACCAAGCAAGA 61.109 55.000 5.01 0.00 0.00 3.02
5759 9988 0.825010 ACAAGGCCACCAAGCAAGAG 60.825 55.000 5.01 0.00 0.00 2.85
5760 9989 1.905354 AAGGCCACCAAGCAAGAGC 60.905 57.895 5.01 0.00 42.56 4.09
5775 10004 5.576337 GCAAGAGCGATCGAAATATACAA 57.424 39.130 21.57 0.00 0.00 2.41
5776 10005 5.603452 GCAAGAGCGATCGAAATATACAAG 58.397 41.667 21.57 0.00 0.00 3.16
5777 10006 5.388890 GCAAGAGCGATCGAAATATACAAGG 60.389 44.000 21.57 0.00 0.00 3.61
5778 10007 5.707242 AGAGCGATCGAAATATACAAGGA 57.293 39.130 21.57 0.00 0.00 3.36
5779 10008 5.704888 AGAGCGATCGAAATATACAAGGAG 58.295 41.667 21.57 0.00 0.00 3.69
5780 10009 4.238514 AGCGATCGAAATATACAAGGAGC 58.761 43.478 21.57 0.00 0.00 4.70
5781 10010 4.021894 AGCGATCGAAATATACAAGGAGCT 60.022 41.667 21.57 0.00 0.00 4.09
5782 10011 4.090642 GCGATCGAAATATACAAGGAGCTG 59.909 45.833 21.57 0.00 0.00 4.24
5783 10012 5.461526 CGATCGAAATATACAAGGAGCTGA 58.538 41.667 10.26 0.00 0.00 4.26
5784 10013 5.343593 CGATCGAAATATACAAGGAGCTGAC 59.656 44.000 10.26 0.00 0.00 3.51
5785 10014 5.854010 TCGAAATATACAAGGAGCTGACT 57.146 39.130 0.00 0.00 0.00 3.41
5786 10015 5.592054 TCGAAATATACAAGGAGCTGACTG 58.408 41.667 0.00 0.00 0.00 3.51
5787 10016 5.359860 TCGAAATATACAAGGAGCTGACTGA 59.640 40.000 0.00 0.00 0.00 3.41
5788 10017 5.689514 CGAAATATACAAGGAGCTGACTGAG 59.310 44.000 0.00 0.00 0.00 3.35
5801 10030 3.332919 CTGACTGAGCAGCTTACAATGT 58.667 45.455 0.00 0.00 0.00 2.71
5802 10031 4.498241 CTGACTGAGCAGCTTACAATGTA 58.502 43.478 0.00 0.00 0.00 2.29
5803 10032 4.893608 TGACTGAGCAGCTTACAATGTAA 58.106 39.130 5.66 5.66 0.00 2.41
5804 10033 4.690748 TGACTGAGCAGCTTACAATGTAAC 59.309 41.667 1.08 0.34 0.00 2.50
5805 10034 3.679980 ACTGAGCAGCTTACAATGTAACG 59.320 43.478 1.08 0.67 0.00 3.18
5806 10035 2.415168 TGAGCAGCTTACAATGTAACGC 59.585 45.455 15.02 15.02 0.00 4.84
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 1.071299 ACAGACAGCGTTGCCATCA 59.929 52.632 0.00 0.00 0.00 3.07
21 22 4.827481 AACGACACAGACAGCGTT 57.173 50.000 0.00 0.00 41.52 4.84
32 33 1.343465 GACTTCAGGAAGGGAACGACA 59.657 52.381 13.19 0.00 42.53 4.35
51 52 1.956629 GAACTTCTCCCCGGCGATGA 61.957 60.000 9.30 2.89 0.00 2.92
60 61 0.402121 AGTGGCCTTGAACTTCTCCC 59.598 55.000 3.32 0.00 0.00 4.30
96 97 5.893500 TCCGATCTATTGATCTAGGGTTCT 58.106 41.667 14.01 0.00 45.10 3.01
110 112 0.176680 GCCGCCATCATCCGATCTAT 59.823 55.000 0.00 0.00 0.00 1.98
123 125 2.281484 GACACCAAAGAGCCGCCA 60.281 61.111 0.00 0.00 0.00 5.69
133 135 1.476110 CCAAGAGGGAAACGACACCAA 60.476 52.381 0.00 0.00 40.01 3.67
148 150 1.522668 CAAGAATGACGCACCCAAGA 58.477 50.000 0.00 0.00 0.00 3.02
155 157 0.955428 GCACCTCCAAGAATGACGCA 60.955 55.000 0.00 0.00 0.00 5.24
204 206 2.594592 GCACCGCTCCACCAAAGT 60.595 61.111 0.00 0.00 0.00 2.66
230 232 1.331756 GATCCGACACCATCAATGTGC 59.668 52.381 0.00 0.00 0.00 4.57
265 267 2.649034 GACGCCGAGTCTCCACAA 59.351 61.111 0.00 0.00 46.13 3.33
290 294 0.323816 TCTGCGTGAGTCCATCTCCT 60.324 55.000 0.00 0.00 42.12 3.69
303 307 1.381872 AGGCCTCTACCATCTGCGT 60.382 57.895 0.00 0.00 0.00 5.24
309 313 1.639635 CCTTGCCAGGCCTCTACCAT 61.640 60.000 9.64 0.00 31.53 3.55
313 317 2.359169 CGACCTTGCCAGGCCTCTA 61.359 63.158 9.64 0.00 45.56 2.43
330 370 2.229062 TCAGAGTAGAACTGAAGCACCG 59.771 50.000 0.00 0.00 40.70 4.94
345 385 0.396417 CCTCCGTCCATCCTCAGAGT 60.396 60.000 0.00 0.00 0.00 3.24
360 400 1.838846 TCGCCTCCATCATCCCTCC 60.839 63.158 0.00 0.00 0.00 4.30
382 422 4.332637 CACCACACGCTGCAAGGC 62.333 66.667 0.00 0.00 0.00 4.35
463 503 6.699642 GCACAAAAGCCTAACATTTAAAGTCA 59.300 34.615 0.00 0.00 0.00 3.41
471 511 3.255642 ACATCGCACAAAAGCCTAACATT 59.744 39.130 0.00 0.00 0.00 2.71
484 524 6.040247 CCTAATACTAAACAGACATCGCACA 58.960 40.000 0.00 0.00 0.00 4.57
500 540 1.343465 CGAATGTCCGGGCCTAATACT 59.657 52.381 2.12 0.00 0.00 2.12
521 561 1.002134 CCCCTTGATGAAGGCGTGT 60.002 57.895 5.26 0.00 46.89 4.49
576 616 7.136822 ACAAGGTGATACATCAATAAGCCTA 57.863 36.000 0.00 0.00 38.75 3.93
687 728 1.365699 ACCGTCGATGCACCAATTAC 58.634 50.000 0.00 0.00 0.00 1.89
688 729 2.963548 TACCGTCGATGCACCAATTA 57.036 45.000 0.00 0.00 0.00 1.40
689 730 1.939934 CATACCGTCGATGCACCAATT 59.060 47.619 0.00 0.00 0.00 2.32
691 732 3.058115 CATACCGTCGATGCACCAA 57.942 52.632 0.00 0.00 0.00 3.67
692 733 4.825377 CATACCGTCGATGCACCA 57.175 55.556 0.00 0.00 0.00 4.17
697 738 5.062183 CACTATTATTGGCATACCGTCGATG 59.938 44.000 0.00 0.00 39.70 3.84
698 739 5.047590 TCACTATTATTGGCATACCGTCGAT 60.048 40.000 0.00 0.00 39.70 3.59
699 740 4.278919 TCACTATTATTGGCATACCGTCGA 59.721 41.667 0.00 0.00 39.70 4.20
700 741 4.552355 TCACTATTATTGGCATACCGTCG 58.448 43.478 0.00 0.00 39.70 5.12
701 742 5.779922 TCTCACTATTATTGGCATACCGTC 58.220 41.667 0.00 0.00 39.70 4.79
702 743 5.801531 TCTCACTATTATTGGCATACCGT 57.198 39.130 0.00 0.00 39.70 4.83
703 744 5.582269 CCATCTCACTATTATTGGCATACCG 59.418 44.000 0.00 0.00 39.70 4.02
704 745 5.355350 GCCATCTCACTATTATTGGCATACC 59.645 44.000 6.86 0.00 46.87 2.73
705 746 6.428385 GCCATCTCACTATTATTGGCATAC 57.572 41.667 6.86 0.00 46.87 2.39
710 751 4.999950 GTCCAGCCATCTCACTATTATTGG 59.000 45.833 0.00 0.00 0.00 3.16
711 752 5.862845 AGTCCAGCCATCTCACTATTATTG 58.137 41.667 0.00 0.00 0.00 1.90
712 753 7.618019 TTAGTCCAGCCATCTCACTATTATT 57.382 36.000 0.00 0.00 0.00 1.40
713 754 7.236432 ACATTAGTCCAGCCATCTCACTATTAT 59.764 37.037 0.00 0.00 0.00 1.28
714 755 6.554982 ACATTAGTCCAGCCATCTCACTATTA 59.445 38.462 0.00 0.00 0.00 0.98
715 756 5.367937 ACATTAGTCCAGCCATCTCACTATT 59.632 40.000 0.00 0.00 0.00 1.73
716 757 4.904251 ACATTAGTCCAGCCATCTCACTAT 59.096 41.667 0.00 0.00 0.00 2.12
717 758 4.100035 CACATTAGTCCAGCCATCTCACTA 59.900 45.833 0.00 0.00 0.00 2.74
718 759 3.110705 ACATTAGTCCAGCCATCTCACT 58.889 45.455 0.00 0.00 0.00 3.41
719 760 3.201290 CACATTAGTCCAGCCATCTCAC 58.799 50.000 0.00 0.00 0.00 3.51
720 761 2.171237 CCACATTAGTCCAGCCATCTCA 59.829 50.000 0.00 0.00 0.00 3.27
721 762 2.486191 CCCACATTAGTCCAGCCATCTC 60.486 54.545 0.00 0.00 0.00 2.75
722 763 1.492176 CCCACATTAGTCCAGCCATCT 59.508 52.381 0.00 0.00 0.00 2.90
723 764 1.972872 CCCACATTAGTCCAGCCATC 58.027 55.000 0.00 0.00 0.00 3.51
724 765 0.106519 GCCCACATTAGTCCAGCCAT 60.107 55.000 0.00 0.00 0.00 4.40
725 766 1.207488 AGCCCACATTAGTCCAGCCA 61.207 55.000 0.00 0.00 0.00 4.75
726 767 0.837272 TAGCCCACATTAGTCCAGCC 59.163 55.000 0.00 0.00 0.00 4.85
727 768 2.158755 ACATAGCCCACATTAGTCCAGC 60.159 50.000 0.00 0.00 0.00 4.85
728 769 3.845781 ACATAGCCCACATTAGTCCAG 57.154 47.619 0.00 0.00 0.00 3.86
729 770 4.269183 CAAACATAGCCCACATTAGTCCA 58.731 43.478 0.00 0.00 0.00 4.02
730 771 3.066760 GCAAACATAGCCCACATTAGTCC 59.933 47.826 0.00 0.00 0.00 3.85
731 772 3.947834 AGCAAACATAGCCCACATTAGTC 59.052 43.478 0.00 0.00 0.00 2.59
732 773 3.968265 AGCAAACATAGCCCACATTAGT 58.032 40.909 0.00 0.00 0.00 2.24
733 774 5.126067 ACTAGCAAACATAGCCCACATTAG 58.874 41.667 0.00 0.00 0.00 1.73
734 775 5.110814 ACTAGCAAACATAGCCCACATTA 57.889 39.130 0.00 0.00 0.00 1.90
735 776 3.968265 ACTAGCAAACATAGCCCACATT 58.032 40.909 0.00 0.00 0.00 2.71
736 777 3.652057 ACTAGCAAACATAGCCCACAT 57.348 42.857 0.00 0.00 0.00 3.21
737 778 3.244735 TGAACTAGCAAACATAGCCCACA 60.245 43.478 0.00 0.00 0.00 4.17
738 779 3.343617 TGAACTAGCAAACATAGCCCAC 58.656 45.455 0.00 0.00 0.00 4.61
739 780 3.263170 TCTGAACTAGCAAACATAGCCCA 59.737 43.478 0.00 0.00 0.00 5.36
740 781 3.873910 TCTGAACTAGCAAACATAGCCC 58.126 45.455 0.00 0.00 0.00 5.19
741 782 3.873952 CCTCTGAACTAGCAAACATAGCC 59.126 47.826 0.00 0.00 0.00 3.93
742 783 3.873952 CCCTCTGAACTAGCAAACATAGC 59.126 47.826 0.00 0.00 0.00 2.97
743 784 5.091261 ACCCTCTGAACTAGCAAACATAG 57.909 43.478 0.00 0.00 0.00 2.23
744 785 5.499004 AACCCTCTGAACTAGCAAACATA 57.501 39.130 0.00 0.00 0.00 2.29
745 786 4.373156 AACCCTCTGAACTAGCAAACAT 57.627 40.909 0.00 0.00 0.00 2.71
746 787 3.857157 AACCCTCTGAACTAGCAAACA 57.143 42.857 0.00 0.00 0.00 2.83
747 788 4.390264 AGAAACCCTCTGAACTAGCAAAC 58.610 43.478 0.00 0.00 31.12 2.93
748 789 4.505039 GGAGAAACCCTCTGAACTAGCAAA 60.505 45.833 0.00 0.00 41.66 3.68
749 790 3.008049 GGAGAAACCCTCTGAACTAGCAA 59.992 47.826 0.00 0.00 41.66 3.91
750 791 2.567615 GGAGAAACCCTCTGAACTAGCA 59.432 50.000 0.00 0.00 41.66 3.49
751 792 2.567615 TGGAGAAACCCTCTGAACTAGC 59.432 50.000 0.00 0.00 41.66 3.42
752 793 4.891992 TTGGAGAAACCCTCTGAACTAG 57.108 45.455 0.00 0.00 41.66 2.57
753 794 5.783360 TGTATTGGAGAAACCCTCTGAACTA 59.217 40.000 0.00 0.00 41.66 2.24
754 795 4.597507 TGTATTGGAGAAACCCTCTGAACT 59.402 41.667 0.00 0.00 41.66 3.01
755 796 4.906618 TGTATTGGAGAAACCCTCTGAAC 58.093 43.478 0.00 0.00 41.66 3.18
756 797 5.779241 ATGTATTGGAGAAACCCTCTGAA 57.221 39.130 0.00 0.00 41.66 3.02
757 798 5.779241 AATGTATTGGAGAAACCCTCTGA 57.221 39.130 0.00 0.00 41.66 3.27
758 799 7.995488 AGAATAATGTATTGGAGAAACCCTCTG 59.005 37.037 0.00 0.00 41.66 3.35
759 800 8.107196 AGAATAATGTATTGGAGAAACCCTCT 57.893 34.615 0.00 0.00 41.66 3.69
760 801 8.753497 AAGAATAATGTATTGGAGAAACCCTC 57.247 34.615 0.00 0.00 41.22 4.30
761 802 8.971073 CAAAGAATAATGTATTGGAGAAACCCT 58.029 33.333 0.00 0.00 38.00 4.34
762 803 8.197439 CCAAAGAATAATGTATTGGAGAAACCC 58.803 37.037 0.00 0.00 42.46 4.11
763 804 8.749354 ACCAAAGAATAATGTATTGGAGAAACC 58.251 33.333 9.63 0.00 42.46 3.27
766 807 9.527157 TCAACCAAAGAATAATGTATTGGAGAA 57.473 29.630 9.63 0.00 42.46 2.87
767 808 9.527157 TTCAACCAAAGAATAATGTATTGGAGA 57.473 29.630 9.63 4.71 42.46 3.71
992 1083 4.857037 CGAAGATCGTGTTCATTGTGTCTA 59.143 41.667 0.00 0.00 34.72 2.59
993 1084 3.675225 CGAAGATCGTGTTCATTGTGTCT 59.325 43.478 0.00 0.00 34.72 3.41
1008 1099 4.859798 AGAGTGATGACGAAAACGAAGATC 59.140 41.667 0.00 0.00 0.00 2.75
1073 1164 1.826385 CTGGCTTTGGTTAGTCCTGG 58.174 55.000 0.00 0.00 37.07 4.45
1257 1348 2.282251 ACGCCGAGACACTCCTCA 60.282 61.111 0.00 0.00 32.86 3.86
1278 1369 2.746904 CCTATTGGCAAACACGATGTCA 59.253 45.455 3.01 0.00 0.00 3.58
1420 1511 4.394712 GGCGTACTGCTGCACCCT 62.395 66.667 0.00 0.00 45.43 4.34
1451 1542 4.552365 CCATGGACCGCGCCATCT 62.552 66.667 14.44 0.00 45.36 2.90
1503 1594 4.617520 TTGAGCTCAACCCGCGCA 62.618 61.111 25.16 0.02 35.42 6.09
1661 1752 2.225791 GATGGCCCCGACAAAAAGCC 62.226 60.000 0.00 0.00 44.13 4.35
1678 1769 3.801698 GCATACATCCATCTATGCCGAT 58.198 45.455 0.00 0.00 39.51 4.18
1720 1812 1.965643 TGCTGATGGCTTTTCTTTGCT 59.034 42.857 0.00 0.00 42.39 3.91
1737 1829 2.092807 TCAGCATGTATGATGGTGTGCT 60.093 45.455 9.90 0.00 43.87 4.40
1769 1861 2.237751 CGGCGGCCTTTCTATGTCG 61.238 63.158 18.34 0.00 0.00 4.35
1771 1863 2.189521 CCGGCGGCCTTTCTATGT 59.810 61.111 15.42 0.00 0.00 2.29
1785 1877 3.520862 GCATCCATGGTGTGCCGG 61.521 66.667 24.95 0.00 37.67 6.13
1807 1902 3.502979 GGTCGGAGATAGTGGAGTATGTC 59.497 52.174 0.00 0.00 40.67 3.06
1849 1945 1.063616 GTAGTGAGCAGTACATCGCGA 59.936 52.381 13.09 13.09 37.23 5.87
1898 1998 7.030768 GCACACTAGAAAAGTTTGTAAAACCA 58.969 34.615 0.00 0.00 38.04 3.67
1967 2071 2.093075 AGTGCATCTCACCAGGATCAAG 60.093 50.000 0.00 0.00 46.81 3.02
2037 2141 4.628074 CACCCCGTATCGACATATTTTCT 58.372 43.478 0.00 0.00 0.00 2.52
2044 2148 0.539986 AAAGCACCCCGTATCGACAT 59.460 50.000 0.00 0.00 0.00 3.06
2054 2158 1.940613 CAGCGTAGAATAAAGCACCCC 59.059 52.381 0.00 0.00 0.00 4.95
2073 2177 2.025155 GATCCCGTGCTCTAGAACTCA 58.975 52.381 0.00 0.00 0.00 3.41
2095 2199 2.158841 TCGGCTTAAATTGTTGTCGCTC 59.841 45.455 0.00 0.00 0.00 5.03
2114 2218 2.002586 CAGGGTGCAGAATACAACTCG 58.997 52.381 0.00 0.00 0.00 4.18
2199 2472 5.010012 AGTTTCTAAGGCAACAAGAACCATG 59.990 40.000 0.00 0.00 39.62 3.66
2241 2514 5.392767 TTTTTGTGTTCCTACTGCAAACA 57.607 34.783 0.00 0.00 33.26 2.83
2360 2634 2.603021 ACAACATGGGCACATTTACCA 58.397 42.857 0.00 0.00 38.88 3.25
2482 2757 2.811431 CCATCGCTACACAAAACTCCAA 59.189 45.455 0.00 0.00 0.00 3.53
2555 2830 4.098654 CCAATTAGTGTCATCGTCTCCTCT 59.901 45.833 0.00 0.00 0.00 3.69
2675 2950 3.181530 CGATAAGTCCTTGCACGAACTTG 60.182 47.826 5.02 0.00 34.09 3.16
2687 2962 4.715534 TCTCTCATCCTCGATAAGTCCT 57.284 45.455 0.00 0.00 0.00 3.85
2844 3120 8.415553 TCCAAATATGCCACTGAAATATTTCTG 58.584 33.333 25.20 25.20 35.37 3.02
2874 3150 1.063070 TGGACCCCTTTGCAGTACCA 61.063 55.000 0.00 0.00 0.00 3.25
2897 3173 8.841300 CCAGATCTTAAGGCCTTAGTTTAAATC 58.159 37.037 23.96 18.80 0.00 2.17
2905 3181 5.815233 TGATCCAGATCTTAAGGCCTTAG 57.185 43.478 23.96 17.77 38.60 2.18
2931 3207 4.790246 TCTAGTACTACACACCTAAGGGGA 59.210 45.833 0.00 0.00 38.76 4.81
2950 3242 7.933577 TGGCATCCTTCACTGTTAAATATCTAG 59.066 37.037 0.00 0.00 0.00 2.43
2975 3267 6.105657 TGTCACGTAATGAGCATTGTAATG 57.894 37.500 5.99 0.28 38.28 1.90
2986 3278 6.920817 ACTAAGTTCTGATGTCACGTAATGA 58.079 36.000 0.00 0.00 33.79 2.57
2992 3284 6.525121 TTGAAACTAAGTTCTGATGTCACG 57.475 37.500 0.00 0.00 0.00 4.35
3037 3329 2.350498 CGGGGAATTTTACAGCTACACG 59.650 50.000 0.00 0.00 0.00 4.49
3043 3335 2.681344 CACCTACGGGGAATTTTACAGC 59.319 50.000 3.71 0.00 38.76 4.40
3175 3468 5.432885 AACTGGTGTTCGAATACCTTTTG 57.567 39.130 34.74 25.26 40.47 2.44
3189 3482 2.424246 CGTTTTGTGGGTAAACTGGTGT 59.576 45.455 0.00 0.00 34.20 4.16
3223 3516 5.379187 GTTTCCAGGTTTACAGGGTTTCTA 58.621 41.667 0.00 0.00 0.00 2.10
3226 3519 2.953648 CGTTTCCAGGTTTACAGGGTTT 59.046 45.455 0.00 0.00 0.00 3.27
3292 3788 3.056393 TGTGAGGTTATTACACCACTCCG 60.056 47.826 0.00 0.00 39.62 4.63
3504 4001 2.279842 GTGAGCCCCACATGCATTT 58.720 52.632 0.00 0.00 45.03 2.32
3564 4061 4.134563 GAGCTAGGAAAGGAACAACAACA 58.865 43.478 0.00 0.00 0.00 3.33
3565 4062 4.134563 TGAGCTAGGAAAGGAACAACAAC 58.865 43.478 0.00 0.00 0.00 3.32
3566 4063 4.431416 TGAGCTAGGAAAGGAACAACAA 57.569 40.909 0.00 0.00 0.00 2.83
3735 4235 7.001073 GTCCCCTTGATAATTAAGCTTCATCT 58.999 38.462 0.00 0.00 0.00 2.90
3736 4236 6.772716 TGTCCCCTTGATAATTAAGCTTCATC 59.227 38.462 0.00 2.85 0.00 2.92
3807 4307 2.513753 CCATGCCACAAGTCCAGTTTA 58.486 47.619 0.00 0.00 0.00 2.01
3809 4309 0.540365 CCCATGCCACAAGTCCAGTT 60.540 55.000 0.00 0.00 0.00 3.16
3811 4311 0.540365 AACCCATGCCACAAGTCCAG 60.540 55.000 0.00 0.00 0.00 3.86
3831 4331 7.821595 TTCGGGTTGCGATATTTATATACAG 57.178 36.000 0.00 0.00 0.00 2.74
3907 4407 8.966155 TTGATTAACTAGGGGAAAAGGAAATT 57.034 30.769 0.00 0.00 0.00 1.82
3918 4418 7.060421 ACACCATACATTTGATTAACTAGGGG 58.940 38.462 0.00 0.00 0.00 4.79
4057 4562 5.752472 CAGAAGAATGACACAGCATAGGTAG 59.248 44.000 0.00 0.00 0.00 3.18
4067 4572 6.290605 TCTTCAATGACAGAAGAATGACACA 58.709 36.000 5.00 0.00 46.07 3.72
4068 4573 6.791887 TCTTCAATGACAGAAGAATGACAC 57.208 37.500 5.00 0.00 46.07 3.67
4246 4751 5.600908 TGCAACGAAGGTATTGTAACTTC 57.399 39.130 4.98 4.98 46.50 3.01
4533 8737 8.112822 TCACCCTCAAACCTATGAAAATAATGA 58.887 33.333 0.00 0.00 0.00 2.57
4824 9028 2.208326 AAGCAACAAAAGAACAGCCG 57.792 45.000 0.00 0.00 0.00 5.52
5025 9229 8.746922 ATGTCAACAAATATAGCACAACTTTG 57.253 30.769 0.00 0.00 33.98 2.77
5066 9270 8.196771 ACATAAACAAATGATCAAACACACAGT 58.803 29.630 0.00 0.00 0.00 3.55
5113 9317 3.252974 ACCAGCCGAAGAGTCAAATAG 57.747 47.619 0.00 0.00 0.00 1.73
5121 9325 2.691409 TATGGAAACCAGCCGAAGAG 57.309 50.000 0.00 0.00 36.75 2.85
5122 9326 2.939640 GCTTATGGAAACCAGCCGAAGA 60.940 50.000 0.00 0.00 36.75 2.87
5281 9505 2.274437 GTTGCTTCGCTGATCTGATCA 58.726 47.619 18.61 18.61 37.76 2.92
5325 9549 4.943705 GTGGTGTCATGAGATAATTGGTGT 59.056 41.667 0.00 0.00 0.00 4.16
5355 9579 0.468226 TGCTGTTGAGGAACCTCGTT 59.532 50.000 14.91 0.00 45.48 3.85
5365 9589 1.003545 CGTGAAGGTGTTGCTGTTGAG 60.004 52.381 0.00 0.00 0.00 3.02
5432 9656 5.133322 AGGATGAAGATCTAGATTTTGGCCA 59.867 40.000 12.93 0.00 0.00 5.36
5493 9722 9.734620 CAATGATGATGGTTTTACGTCATTAAT 57.265 29.630 0.00 0.00 44.75 1.40
5494 9723 7.700234 GCAATGATGATGGTTTTACGTCATTAA 59.300 33.333 0.00 0.00 44.75 1.40
5523 9752 3.197983 GTCTGGCCTGAGTTGGTTATACT 59.802 47.826 13.36 0.00 0.00 2.12
5583 9812 1.432270 GCATGTTAGCTGCCGACTCC 61.432 60.000 0.00 0.00 33.44 3.85
5614 9843 4.992688 TGTTTTGATGTTGGTTGTCTCAC 58.007 39.130 0.00 0.00 0.00 3.51
5626 9855 4.281435 TGCATGTCCAATCTGTTTTGATGT 59.719 37.500 0.00 0.00 0.00 3.06
5640 9869 3.088532 GGTGAGGTAATTTGCATGTCCA 58.911 45.455 0.00 0.00 0.00 4.02
5641 9870 3.356290 AGGTGAGGTAATTTGCATGTCC 58.644 45.455 0.00 0.00 0.00 4.02
5673 9902 6.018180 GCTCTCCTTGAGACTTCGTTTAAAAA 60.018 38.462 0.00 0.00 45.39 1.94
5674 9903 5.465724 GCTCTCCTTGAGACTTCGTTTAAAA 59.534 40.000 0.00 0.00 45.39 1.52
5675 9904 4.989168 GCTCTCCTTGAGACTTCGTTTAAA 59.011 41.667 0.00 0.00 45.39 1.52
5676 9905 4.557205 GCTCTCCTTGAGACTTCGTTTAA 58.443 43.478 0.00 0.00 45.39 1.52
5677 9906 4.175787 GCTCTCCTTGAGACTTCGTTTA 57.824 45.455 0.00 0.00 45.39 2.01
5678 9907 3.033368 GCTCTCCTTGAGACTTCGTTT 57.967 47.619 0.00 0.00 45.39 3.60
5679 9908 2.734276 GCTCTCCTTGAGACTTCGTT 57.266 50.000 0.00 0.00 45.39 3.85
5686 9915 0.251832 AAGTCGGGCTCTCCTTGAGA 60.252 55.000 0.00 0.00 45.39 3.27
5687 9916 0.610687 AAAGTCGGGCTCTCCTTGAG 59.389 55.000 0.00 0.00 45.33 3.02
5688 9917 1.933021 TAAAGTCGGGCTCTCCTTGA 58.067 50.000 0.00 0.00 0.00 3.02
5689 9918 2.762535 TTAAAGTCGGGCTCTCCTTG 57.237 50.000 0.00 0.00 0.00 3.61
5690 9919 4.302559 AATTTAAAGTCGGGCTCTCCTT 57.697 40.909 0.00 0.00 0.00 3.36
5691 9920 5.183969 GTTAATTTAAAGTCGGGCTCTCCT 58.816 41.667 0.00 0.00 0.00 3.69
5692 9921 4.939439 TGTTAATTTAAAGTCGGGCTCTCC 59.061 41.667 0.00 0.00 0.00 3.71
5693 9922 6.490566 TTGTTAATTTAAAGTCGGGCTCTC 57.509 37.500 0.00 0.00 0.00 3.20
5694 9923 6.569801 GCTTTGTTAATTTAAAGTCGGGCTCT 60.570 38.462 0.00 0.00 36.52 4.09
5695 9924 5.571741 GCTTTGTTAATTTAAAGTCGGGCTC 59.428 40.000 0.00 0.00 36.52 4.70
5696 9925 5.466819 GCTTTGTTAATTTAAAGTCGGGCT 58.533 37.500 0.00 0.00 36.52 5.19
5697 9926 4.624024 GGCTTTGTTAATTTAAAGTCGGGC 59.376 41.667 0.00 0.00 36.52 6.13
5701 9930 7.096353 GGTTGACGGCTTTGTTAATTTAAAGTC 60.096 37.037 0.00 0.00 36.52 3.01
5702 9931 6.698329 GGTTGACGGCTTTGTTAATTTAAAGT 59.302 34.615 0.00 0.00 36.52 2.66
5703 9932 6.129300 CGGTTGACGGCTTTGTTAATTTAAAG 60.129 38.462 0.00 0.00 39.42 1.85
5704 9933 5.686397 CGGTTGACGGCTTTGTTAATTTAAA 59.314 36.000 0.00 0.00 39.42 1.52
5705 9934 5.213675 CGGTTGACGGCTTTGTTAATTTAA 58.786 37.500 0.00 0.00 39.42 1.52
5706 9935 4.785417 CGGTTGACGGCTTTGTTAATTTA 58.215 39.130 0.00 0.00 39.42 1.40
5707 9936 3.634283 CGGTTGACGGCTTTGTTAATTT 58.366 40.909 0.00 0.00 39.42 1.82
5708 9937 3.276882 CGGTTGACGGCTTTGTTAATT 57.723 42.857 0.00 0.00 39.42 1.40
5709 9938 2.981400 CGGTTGACGGCTTTGTTAAT 57.019 45.000 0.00 0.00 39.42 1.40
5720 9949 1.087771 GTAATCCTGGCCGGTTGACG 61.088 60.000 11.58 0.00 43.80 4.35
5721 9950 0.035820 TGTAATCCTGGCCGGTTGAC 60.036 55.000 11.58 7.88 0.00 3.18
5722 9951 0.035820 GTGTAATCCTGGCCGGTTGA 60.036 55.000 11.58 1.27 0.00 3.18
5723 9952 0.322098 TGTGTAATCCTGGCCGGTTG 60.322 55.000 11.58 0.00 0.00 3.77
5724 9953 0.402504 TTGTGTAATCCTGGCCGGTT 59.597 50.000 11.58 1.23 0.00 4.44
5725 9954 0.035439 CTTGTGTAATCCTGGCCGGT 60.035 55.000 11.58 0.00 0.00 5.28
5726 9955 0.748005 CCTTGTGTAATCCTGGCCGG 60.748 60.000 3.88 3.88 0.00 6.13
5727 9956 1.376609 GCCTTGTGTAATCCTGGCCG 61.377 60.000 0.00 0.00 34.81 6.13
5728 9957 2.493547 GCCTTGTGTAATCCTGGCC 58.506 57.895 0.00 0.00 34.81 5.36
5729 9958 0.323360 TGGCCTTGTGTAATCCTGGC 60.323 55.000 3.32 0.00 39.61 4.85
5730 9959 1.463674 GTGGCCTTGTGTAATCCTGG 58.536 55.000 3.32 0.00 0.00 4.45
5731 9960 1.271871 TGGTGGCCTTGTGTAATCCTG 60.272 52.381 3.32 0.00 0.00 3.86
5732 9961 1.072266 TGGTGGCCTTGTGTAATCCT 58.928 50.000 3.32 0.00 0.00 3.24
5733 9962 1.818674 CTTGGTGGCCTTGTGTAATCC 59.181 52.381 3.32 0.00 0.00 3.01
5734 9963 1.202348 GCTTGGTGGCCTTGTGTAATC 59.798 52.381 3.32 0.00 0.00 1.75
5735 9964 1.256812 GCTTGGTGGCCTTGTGTAAT 58.743 50.000 3.32 0.00 0.00 1.89
5736 9965 0.106469 TGCTTGGTGGCCTTGTGTAA 60.106 50.000 3.32 0.00 0.00 2.41
5737 9966 0.106469 TTGCTTGGTGGCCTTGTGTA 60.106 50.000 3.32 0.00 0.00 2.90
5738 9967 1.381056 TTGCTTGGTGGCCTTGTGT 60.381 52.632 3.32 0.00 0.00 3.72
5739 9968 1.108727 TCTTGCTTGGTGGCCTTGTG 61.109 55.000 3.32 0.00 0.00 3.33
5740 9969 0.825010 CTCTTGCTTGGTGGCCTTGT 60.825 55.000 3.32 0.00 0.00 3.16
5741 9970 1.962144 CTCTTGCTTGGTGGCCTTG 59.038 57.895 3.32 0.00 0.00 3.61
5742 9971 1.905354 GCTCTTGCTTGGTGGCCTT 60.905 57.895 3.32 0.00 36.03 4.35
5743 9972 2.282745 GCTCTTGCTTGGTGGCCT 60.283 61.111 3.32 0.00 36.03 5.19
5744 9973 3.741476 CGCTCTTGCTTGGTGGCC 61.741 66.667 0.00 0.00 36.97 5.36
5745 9974 1.986575 GATCGCTCTTGCTTGGTGGC 61.987 60.000 0.00 0.00 36.97 5.01
5746 9975 1.699656 CGATCGCTCTTGCTTGGTGG 61.700 60.000 0.26 0.00 36.97 4.61
5747 9976 0.737367 TCGATCGCTCTTGCTTGGTG 60.737 55.000 11.09 0.00 36.97 4.17
5748 9977 0.037326 TTCGATCGCTCTTGCTTGGT 60.037 50.000 11.09 0.00 36.97 3.67
5749 9978 1.078709 TTTCGATCGCTCTTGCTTGG 58.921 50.000 11.09 0.00 36.97 3.61
5750 9979 4.722203 ATATTTCGATCGCTCTTGCTTG 57.278 40.909 11.09 0.00 36.97 4.01
5751 9980 5.289595 TGTATATTTCGATCGCTCTTGCTT 58.710 37.500 11.09 0.00 36.97 3.91
5752 9981 4.871513 TGTATATTTCGATCGCTCTTGCT 58.128 39.130 11.09 0.00 36.97 3.91
5753 9982 5.388890 CCTTGTATATTTCGATCGCTCTTGC 60.389 44.000 11.09 0.00 0.00 4.01
5754 9983 5.920840 TCCTTGTATATTTCGATCGCTCTTG 59.079 40.000 11.09 0.00 0.00 3.02
5755 9984 6.085555 TCCTTGTATATTTCGATCGCTCTT 57.914 37.500 11.09 0.00 0.00 2.85
5756 9985 5.704888 CTCCTTGTATATTTCGATCGCTCT 58.295 41.667 11.09 0.00 0.00 4.09
5757 9986 4.324936 GCTCCTTGTATATTTCGATCGCTC 59.675 45.833 11.09 0.00 0.00 5.03
5758 9987 4.021894 AGCTCCTTGTATATTTCGATCGCT 60.022 41.667 11.09 0.00 0.00 4.93
5759 9988 4.090642 CAGCTCCTTGTATATTTCGATCGC 59.909 45.833 11.09 0.00 0.00 4.58
5760 9989 5.343593 GTCAGCTCCTTGTATATTTCGATCG 59.656 44.000 9.36 9.36 0.00 3.69
5761 9990 6.364706 CAGTCAGCTCCTTGTATATTTCGATC 59.635 42.308 0.00 0.00 0.00 3.69
5762 9991 6.040955 TCAGTCAGCTCCTTGTATATTTCGAT 59.959 38.462 0.00 0.00 0.00 3.59
5763 9992 5.359860 TCAGTCAGCTCCTTGTATATTTCGA 59.640 40.000 0.00 0.00 0.00 3.71
5764 9993 5.592054 TCAGTCAGCTCCTTGTATATTTCG 58.408 41.667 0.00 0.00 0.00 3.46
5765 9994 5.465056 GCTCAGTCAGCTCCTTGTATATTTC 59.535 44.000 0.00 0.00 45.83 2.17
5766 9995 5.363939 GCTCAGTCAGCTCCTTGTATATTT 58.636 41.667 0.00 0.00 45.83 1.40
5767 9996 4.954875 GCTCAGTCAGCTCCTTGTATATT 58.045 43.478 0.00 0.00 45.83 1.28
5768 9997 4.599047 GCTCAGTCAGCTCCTTGTATAT 57.401 45.455 0.00 0.00 45.83 0.86
5770 9999 2.977772 GCTCAGTCAGCTCCTTGTAT 57.022 50.000 0.00 0.00 45.83 2.29
5780 10009 3.332919 ACATTGTAAGCTGCTCAGTCAG 58.667 45.455 1.00 0.00 37.15 3.51
5781 10010 3.407424 ACATTGTAAGCTGCTCAGTCA 57.593 42.857 1.00 0.00 0.00 3.41
5782 10011 4.201628 CGTTACATTGTAAGCTGCTCAGTC 60.202 45.833 9.49 0.00 0.00 3.51
5783 10012 3.679980 CGTTACATTGTAAGCTGCTCAGT 59.320 43.478 9.49 0.00 0.00 3.41
5784 10013 3.484229 GCGTTACATTGTAAGCTGCTCAG 60.484 47.826 9.49 0.00 0.00 3.35
5785 10014 2.415168 GCGTTACATTGTAAGCTGCTCA 59.585 45.455 9.49 0.00 0.00 4.26
5786 10015 3.039670 GCGTTACATTGTAAGCTGCTC 57.960 47.619 9.49 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.