Multiple sequence alignment - TraesCS3B01G582100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G582100 chr3B 100.000 6368 0 0 1 6368 810456082 810449715 0.000000e+00 11760
1 TraesCS3B01G582100 chr3B 99.564 459 2 0 476 934 810450705 810450247 0.000000e+00 837
2 TraesCS3B01G582100 chr3B 97.380 458 12 0 5832 6289 685611536 685611993 0.000000e+00 780
3 TraesCS3B01G582100 chr3B 97.549 204 5 0 272 475 820524565 820524362 3.650000e-92 350
4 TraesCS3B01G582100 chr3B 96.569 204 7 0 272 475 685611340 685611543 7.910000e-89 339
5 TraesCS3B01G582100 chr3B 81.006 179 21 4 50 227 810353628 810353462 5.180000e-26 130
6 TraesCS3B01G582100 chr3B 95.062 81 4 0 6288 6368 810512340 810512260 1.860000e-25 128
7 TraesCS3B01G582100 chr7A 98.824 5359 63 0 476 5834 682672075 682677433 0.000000e+00 9548
8 TraesCS3B01G582100 chr7A 98.468 457 7 0 476 932 682676977 682677433 0.000000e+00 806
9 TraesCS3B01G582100 chr5B 98.107 5284 83 11 475 5758 679574244 679568978 0.000000e+00 9188
10 TraesCS3B01G582100 chr5B 82.041 4538 767 39 888 5396 36909668 36905150 0.000000e+00 3821
11 TraesCS3B01G582100 chr5B 81.894 4573 727 79 712 5235 540471194 540466674 0.000000e+00 3764
12 TraesCS3B01G582100 chr5B 85.177 3670 483 46 2113 5743 534854012 534857659 0.000000e+00 3707
13 TraesCS3B01G582100 chr5B 80.453 4589 778 92 709 5235 556256243 556260774 0.000000e+00 3395
14 TraesCS3B01G582100 chr5B 98.681 455 6 0 5835 6289 530709722 530709268 0.000000e+00 808
15 TraesCS3B01G582100 chr5B 97.598 458 11 0 5832 6289 606279838 606280295 0.000000e+00 785
16 TraesCS3B01G582100 chr5B 98.688 381 5 0 476 856 679569358 679568978 0.000000e+00 676
17 TraesCS3B01G582100 chr5B 98.163 381 7 0 5378 5758 679574243 679573863 0.000000e+00 665
18 TraesCS3B01G582100 chr5B 98.618 217 3 0 259 475 606279629 606279845 1.000000e-102 385
19 TraesCS3B01G582100 chr5B 97.549 204 5 0 272 475 677651359 677651156 3.650000e-92 350
20 TraesCS3B01G582100 chr4A 92.608 4559 326 3 1200 5758 602778550 602783097 0.000000e+00 6541
21 TraesCS3B01G582100 chr4A 84.875 5296 693 85 476 5724 673923134 673917900 0.000000e+00 5243
22 TraesCS3B01G582100 chr4A 91.864 381 20 3 476 856 602782728 602783097 7.320000e-144 521
23 TraesCS3B01G582100 chr4A 86.863 373 39 10 473 841 667043408 667043042 5.940000e-110 409
24 TraesCS3B01G582100 chr6A 83.588 5307 756 84 476 5722 54071635 54066384 0.000000e+00 4868
25 TraesCS3B01G582100 chr3D 83.206 4597 714 44 921 5487 568172692 568177260 0.000000e+00 4159
26 TraesCS3B01G582100 chr3D 89.385 179 17 1 50 228 603292093 603292269 2.310000e-54 224
27 TraesCS3B01G582100 chr3D 95.062 81 4 0 6288 6368 603349365 603349445 1.860000e-25 128
28 TraesCS3B01G582100 chr7B 82.048 4579 714 88 712 5235 51166986 51162461 0.000000e+00 3803
29 TraesCS3B01G582100 chr7B 81.963 4574 728 73 709 5235 4622035 4626558 0.000000e+00 3786
30 TraesCS3B01G582100 chr7B 97.582 455 11 0 5832 6286 448347491 448347945 0.000000e+00 780
31 TraesCS3B01G582100 chr7B 97.582 455 11 0 5835 6289 636461945 636461491 0.000000e+00 780
32 TraesCS3B01G582100 chr7B 79.839 248 27 20 5614 5849 51162101 51161865 6.610000e-35 159
33 TraesCS3B01G582100 chr2B 81.945 4575 716 89 709 5235 771222010 771226522 0.000000e+00 3771
34 TraesCS3B01G582100 chr2B 98.018 454 9 0 5835 6288 799649592 799649139 0.000000e+00 789
35 TraesCS3B01G582100 chr2B 97.802 455 10 0 5835 6289 436266545 436266091 0.000000e+00 785
36 TraesCS3B01G582100 chr5D 88.254 2801 303 18 2942 5721 543243743 543240948 0.000000e+00 3326
37 TraesCS3B01G582100 chr5D 83.441 2470 349 39 475 2932 543254664 543252243 0.000000e+00 2241
38 TraesCS3B01G582100 chr5D 88.728 346 34 5 476 819 543241290 543240948 9.870000e-113 418
39 TraesCS3B01G582100 chr2A 85.897 2035 270 13 859 2883 15088399 15086372 0.000000e+00 2152
40 TraesCS3B01G582100 chr4B 97.598 458 11 0 5832 6289 621673769 621674226 0.000000e+00 785
41 TraesCS3B01G582100 chr4B 99.479 192 1 0 284 475 621673585 621673776 3.650000e-92 350
42 TraesCS3B01G582100 chr1B 97.582 455 11 0 5835 6289 655851365 655850911 0.000000e+00 780
43 TraesCS3B01G582100 chr6B 98.039 204 4 0 272 475 715075342 715075139 7.850000e-94 355
44 TraesCS3B01G582100 chr6B 97.537 203 5 0 273 475 51383389 51383591 1.310000e-91 348
45 TraesCS3B01G582100 chr6B 97.059 204 6 0 272 475 15134545 15134748 1.700000e-90 344
46 TraesCS3B01G582100 chr6B 96.569 204 5 2 272 475 478880596 478880797 2.840000e-88 337
47 TraesCS3B01G582100 chrUn 78.279 244 31 18 5605 5836 462412861 462413094 3.100000e-28 137


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G582100 chr3B 810449715 810456082 6367 True 11760.0 11760 100.0000 1 6368 1 chr3B.!!$R2 6367
1 TraesCS3B01G582100 chr3B 685611340 685611993 653 False 559.5 780 96.9745 272 6289 2 chr3B.!!$F1 6017
2 TraesCS3B01G582100 chr7A 682672075 682677433 5358 False 5177.0 9548 98.6460 476 5834 2 chr7A.!!$F1 5358
3 TraesCS3B01G582100 chr5B 679568978 679574244 5266 True 9188.0 9188 98.1070 475 5758 1 chr5B.!!$R5 5283
4 TraesCS3B01G582100 chr5B 36905150 36909668 4518 True 3821.0 3821 82.0410 888 5396 1 chr5B.!!$R1 4508
5 TraesCS3B01G582100 chr5B 540466674 540471194 4520 True 3764.0 3764 81.8940 712 5235 1 chr5B.!!$R3 4523
6 TraesCS3B01G582100 chr5B 534854012 534857659 3647 False 3707.0 3707 85.1770 2113 5743 1 chr5B.!!$F1 3630
7 TraesCS3B01G582100 chr5B 556256243 556260774 4531 False 3395.0 3395 80.4530 709 5235 1 chr5B.!!$F2 4526
8 TraesCS3B01G582100 chr5B 606279629 606280295 666 False 585.0 785 98.1080 259 6289 2 chr5B.!!$F3 6030
9 TraesCS3B01G582100 chr4A 673917900 673923134 5234 True 5243.0 5243 84.8750 476 5724 1 chr4A.!!$R2 5248
10 TraesCS3B01G582100 chr4A 602778550 602783097 4547 False 3531.0 6541 92.2360 476 5758 2 chr4A.!!$F1 5282
11 TraesCS3B01G582100 chr6A 54066384 54071635 5251 True 4868.0 4868 83.5880 476 5722 1 chr6A.!!$R1 5246
12 TraesCS3B01G582100 chr3D 568172692 568177260 4568 False 4159.0 4159 83.2060 921 5487 1 chr3D.!!$F1 4566
13 TraesCS3B01G582100 chr7B 4622035 4626558 4523 False 3786.0 3786 81.9630 709 5235 1 chr7B.!!$F1 4526
14 TraesCS3B01G582100 chr7B 51161865 51166986 5121 True 1981.0 3803 80.9435 712 5849 2 chr7B.!!$R2 5137
15 TraesCS3B01G582100 chr2B 771222010 771226522 4512 False 3771.0 3771 81.9450 709 5235 1 chr2B.!!$F1 4526
16 TraesCS3B01G582100 chr5D 543252243 543254664 2421 True 2241.0 2241 83.4410 475 2932 1 chr5D.!!$R1 2457
17 TraesCS3B01G582100 chr5D 543240948 543243743 2795 True 1872.0 3326 88.4910 476 5721 2 chr5D.!!$R2 5245
18 TraesCS3B01G582100 chr2A 15086372 15088399 2027 True 2152.0 2152 85.8970 859 2883 1 chr2A.!!$R1 2024
19 TraesCS3B01G582100 chr4B 621673585 621674226 641 False 567.5 785 98.5385 284 6289 2 chr4B.!!$F1 6005

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
459 460 0.036875 GCTAGGGTTTGTGTCCTGCT 59.963 55.000 0.0 0.0 34.75 4.24 F
462 463 0.109342 AGGGTTTGTGTCCTGCTCAG 59.891 55.000 0.0 0.0 31.11 3.35 F
2186 2248 2.045708 GCAATCACATGACGGGGCA 61.046 57.895 0.0 0.0 0.00 5.36 F
2583 2645 1.987855 CCTCCACTTCCGGGCACTA 60.988 63.158 0.0 0.0 0.00 2.74 F
4984 5073 0.319900 CCTCGGATCGGGTGCTATTG 60.320 60.000 0.0 0.0 0.00 1.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1814 1876 0.536460 TCCGTGGAAGTTCTTTGCCC 60.536 55.000 2.25 0.00 0.00 5.36 R
2583 2645 2.048597 TTCGCGCCAAGATCGTGT 60.049 55.556 0.00 0.00 38.45 4.49 R
3883 3972 0.982852 TCCATCTCCGCCTCCATTGT 60.983 55.000 0.00 0.00 0.00 2.71 R
5101 5192 3.201266 ACCTTCTGAACTGTTGTACCCAA 59.799 43.478 0.00 0.00 0.00 4.12 R
6315 6437 0.039074 AGAGTCGGAAGCTTCGTGTG 60.039 55.000 19.91 9.88 0.00 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 7.751768 AAAAACAATGAAGGAAAAACAACCA 57.248 28.000 0.00 0.00 0.00 3.67
31 32 7.751768 AAAACAATGAAGGAAAAACAACCAA 57.248 28.000 0.00 0.00 0.00 3.67
32 33 7.751768 AAACAATGAAGGAAAAACAACCAAA 57.248 28.000 0.00 0.00 0.00 3.28
33 34 7.751768 AACAATGAAGGAAAAACAACCAAAA 57.248 28.000 0.00 0.00 0.00 2.44
34 35 7.751768 ACAATGAAGGAAAAACAACCAAAAA 57.248 28.000 0.00 0.00 0.00 1.94
35 36 7.815641 ACAATGAAGGAAAAACAACCAAAAAG 58.184 30.769 0.00 0.00 0.00 2.27
36 37 7.663493 ACAATGAAGGAAAAACAACCAAAAAGA 59.337 29.630 0.00 0.00 0.00 2.52
37 38 7.848223 ATGAAGGAAAAACAACCAAAAAGAG 57.152 32.000 0.00 0.00 0.00 2.85
38 39 6.998802 TGAAGGAAAAACAACCAAAAAGAGA 58.001 32.000 0.00 0.00 0.00 3.10
39 40 7.445945 TGAAGGAAAAACAACCAAAAAGAGAA 58.554 30.769 0.00 0.00 0.00 2.87
40 41 7.602265 TGAAGGAAAAACAACCAAAAAGAGAAG 59.398 33.333 0.00 0.00 0.00 2.85
41 42 7.239763 AGGAAAAACAACCAAAAAGAGAAGA 57.760 32.000 0.00 0.00 0.00 2.87
42 43 7.676004 AGGAAAAACAACCAAAAAGAGAAGAA 58.324 30.769 0.00 0.00 0.00 2.52
43 44 7.602644 AGGAAAAACAACCAAAAAGAGAAGAAC 59.397 33.333 0.00 0.00 0.00 3.01
44 45 7.386573 GGAAAAACAACCAAAAAGAGAAGAACA 59.613 33.333 0.00 0.00 0.00 3.18
45 46 7.889589 AAAACAACCAAAAAGAGAAGAACAG 57.110 32.000 0.00 0.00 0.00 3.16
46 47 6.834168 AACAACCAAAAAGAGAAGAACAGA 57.166 33.333 0.00 0.00 0.00 3.41
47 48 6.834168 ACAACCAAAAAGAGAAGAACAGAA 57.166 33.333 0.00 0.00 0.00 3.02
48 49 7.227049 ACAACCAAAAAGAGAAGAACAGAAA 57.773 32.000 0.00 0.00 0.00 2.52
49 50 7.666623 ACAACCAAAAAGAGAAGAACAGAAAA 58.333 30.769 0.00 0.00 0.00 2.29
50 51 8.147704 ACAACCAAAAAGAGAAGAACAGAAAAA 58.852 29.630 0.00 0.00 0.00 1.94
72 73 5.520376 AAATTGCTAACCTGCATATCACC 57.480 39.130 0.00 0.00 42.96 4.02
73 74 3.931907 TTGCTAACCTGCATATCACCT 57.068 42.857 0.00 0.00 42.96 4.00
74 75 3.931907 TGCTAACCTGCATATCACCTT 57.068 42.857 0.00 0.00 38.12 3.50
75 76 3.808728 TGCTAACCTGCATATCACCTTC 58.191 45.455 0.00 0.00 38.12 3.46
76 77 3.142174 GCTAACCTGCATATCACCTTCC 58.858 50.000 0.00 0.00 0.00 3.46
77 78 3.181450 GCTAACCTGCATATCACCTTCCT 60.181 47.826 0.00 0.00 0.00 3.36
78 79 3.567478 AACCTGCATATCACCTTCCTC 57.433 47.619 0.00 0.00 0.00 3.71
79 80 1.771255 ACCTGCATATCACCTTCCTCC 59.229 52.381 0.00 0.00 0.00 4.30
80 81 1.770658 CCTGCATATCACCTTCCTCCA 59.229 52.381 0.00 0.00 0.00 3.86
81 82 2.224475 CCTGCATATCACCTTCCTCCAG 60.224 54.545 0.00 0.00 0.00 3.86
82 83 2.437281 CTGCATATCACCTTCCTCCAGT 59.563 50.000 0.00 0.00 0.00 4.00
83 84 2.846206 TGCATATCACCTTCCTCCAGTT 59.154 45.455 0.00 0.00 0.00 3.16
84 85 3.266772 TGCATATCACCTTCCTCCAGTTT 59.733 43.478 0.00 0.00 0.00 2.66
85 86 4.263905 TGCATATCACCTTCCTCCAGTTTT 60.264 41.667 0.00 0.00 0.00 2.43
86 87 4.096984 GCATATCACCTTCCTCCAGTTTTG 59.903 45.833 0.00 0.00 0.00 2.44
87 88 1.981256 TCACCTTCCTCCAGTTTTGC 58.019 50.000 0.00 0.00 0.00 3.68
88 89 0.961753 CACCTTCCTCCAGTTTTGCC 59.038 55.000 0.00 0.00 0.00 4.52
89 90 0.853530 ACCTTCCTCCAGTTTTGCCT 59.146 50.000 0.00 0.00 0.00 4.75
90 91 1.251251 CCTTCCTCCAGTTTTGCCTG 58.749 55.000 0.00 0.00 0.00 4.85
91 92 1.202927 CCTTCCTCCAGTTTTGCCTGA 60.203 52.381 0.00 0.00 34.23 3.86
92 93 2.556114 CCTTCCTCCAGTTTTGCCTGAT 60.556 50.000 0.00 0.00 34.23 2.90
93 94 2.978156 TCCTCCAGTTTTGCCTGATT 57.022 45.000 0.00 0.00 34.23 2.57
94 95 2.517959 TCCTCCAGTTTTGCCTGATTG 58.482 47.619 0.00 0.00 34.23 2.67
95 96 1.547372 CCTCCAGTTTTGCCTGATTGG 59.453 52.381 0.00 0.00 34.23 3.16
108 109 4.387026 CCTGATTGGCATATTTAGGGGA 57.613 45.455 0.00 0.00 0.00 4.81
109 110 4.082125 CCTGATTGGCATATTTAGGGGAC 58.918 47.826 0.00 0.00 0.00 4.46
110 111 4.447616 CCTGATTGGCATATTTAGGGGACA 60.448 45.833 0.00 0.00 0.00 4.02
111 112 5.327732 CTGATTGGCATATTTAGGGGACAT 58.672 41.667 0.00 0.00 0.00 3.06
112 113 6.461577 TGATTGGCATATTTAGGGGACATA 57.538 37.500 0.00 0.00 0.00 2.29
113 114 6.245408 TGATTGGCATATTTAGGGGACATAC 58.755 40.000 0.00 0.00 0.00 2.39
114 115 5.922960 TTGGCATATTTAGGGGACATACT 57.077 39.130 0.00 0.00 0.00 2.12
115 116 7.238723 TGATTGGCATATTTAGGGGACATACTA 59.761 37.037 0.00 0.00 0.00 1.82
116 117 6.620877 TGGCATATTTAGGGGACATACTAG 57.379 41.667 0.00 0.00 0.00 2.57
117 118 5.487488 TGGCATATTTAGGGGACATACTAGG 59.513 44.000 0.00 0.00 0.00 3.02
118 119 5.429130 GCATATTTAGGGGACATACTAGGC 58.571 45.833 0.00 0.00 0.00 3.93
119 120 5.045869 GCATATTTAGGGGACATACTAGGCA 60.046 44.000 0.00 0.00 0.00 4.75
120 121 4.976540 ATTTAGGGGACATACTAGGCAC 57.023 45.455 0.00 0.00 0.00 5.01
121 122 3.408157 TTAGGGGACATACTAGGCACA 57.592 47.619 0.00 0.00 0.00 4.57
122 123 1.497161 AGGGGACATACTAGGCACAC 58.503 55.000 0.00 0.00 0.00 3.82
123 124 0.104304 GGGGACATACTAGGCACACG 59.896 60.000 0.00 0.00 0.00 4.49
124 125 1.108776 GGGACATACTAGGCACACGA 58.891 55.000 0.00 0.00 0.00 4.35
125 126 1.067212 GGGACATACTAGGCACACGAG 59.933 57.143 0.00 0.00 0.00 4.18
126 127 1.749634 GGACATACTAGGCACACGAGT 59.250 52.381 0.00 0.00 38.64 4.18
127 128 2.223525 GGACATACTAGGCACACGAGTC 60.224 54.545 0.00 0.00 36.40 3.36
128 129 2.422479 GACATACTAGGCACACGAGTCA 59.578 50.000 0.00 0.00 36.40 3.41
129 130 2.423892 ACATACTAGGCACACGAGTCAG 59.576 50.000 0.00 0.00 36.40 3.51
130 131 0.809385 TACTAGGCACACGAGTCAGC 59.191 55.000 0.00 0.00 36.40 4.26
131 132 0.896019 ACTAGGCACACGAGTCAGCT 60.896 55.000 0.00 0.00 27.86 4.24
132 133 0.179150 CTAGGCACACGAGTCAGCTC 60.179 60.000 0.00 0.00 38.35 4.09
133 134 0.609406 TAGGCACACGAGTCAGCTCT 60.609 55.000 0.00 0.00 39.53 4.09
134 135 1.005630 GGCACACGAGTCAGCTCTT 60.006 57.895 0.00 0.00 39.53 2.85
135 136 0.601311 GGCACACGAGTCAGCTCTTT 60.601 55.000 0.00 0.00 39.53 2.52
136 137 1.336887 GGCACACGAGTCAGCTCTTTA 60.337 52.381 0.00 0.00 39.53 1.85
137 138 2.611518 GCACACGAGTCAGCTCTTTAT 58.388 47.619 0.00 0.00 39.53 1.40
138 139 2.996621 GCACACGAGTCAGCTCTTTATT 59.003 45.455 0.00 0.00 39.53 1.40
139 140 3.181526 GCACACGAGTCAGCTCTTTATTG 60.182 47.826 0.00 0.00 39.53 1.90
140 141 4.237724 CACACGAGTCAGCTCTTTATTGA 58.762 43.478 0.00 0.00 39.53 2.57
141 142 4.686091 CACACGAGTCAGCTCTTTATTGAA 59.314 41.667 0.00 0.00 39.53 2.69
142 143 4.686554 ACACGAGTCAGCTCTTTATTGAAC 59.313 41.667 0.00 0.00 39.53 3.18
143 144 4.926238 CACGAGTCAGCTCTTTATTGAACT 59.074 41.667 0.00 0.00 39.53 3.01
144 145 5.061560 CACGAGTCAGCTCTTTATTGAACTC 59.938 44.000 0.00 0.00 39.53 3.01
145 146 4.564769 CGAGTCAGCTCTTTATTGAACTCC 59.435 45.833 0.00 0.00 39.53 3.85
146 147 5.482908 GAGTCAGCTCTTTATTGAACTCCA 58.517 41.667 0.00 0.00 38.66 3.86
147 148 6.059787 AGTCAGCTCTTTATTGAACTCCAT 57.940 37.500 0.00 0.00 0.00 3.41
148 149 6.479884 AGTCAGCTCTTTATTGAACTCCATT 58.520 36.000 0.00 0.00 0.00 3.16
149 150 6.944862 AGTCAGCTCTTTATTGAACTCCATTT 59.055 34.615 0.00 0.00 0.00 2.32
150 151 7.449704 AGTCAGCTCTTTATTGAACTCCATTTT 59.550 33.333 0.00 0.00 0.00 1.82
151 152 8.084684 GTCAGCTCTTTATTGAACTCCATTTTT 58.915 33.333 0.00 0.00 0.00 1.94
171 172 6.724694 TTTTTAAGATGTCAATGCAATGGC 57.275 33.333 0.00 0.00 41.68 4.40
172 173 5.664294 TTTAAGATGTCAATGCAATGGCT 57.336 34.783 8.03 0.00 41.91 4.75
173 174 3.520290 AAGATGTCAATGCAATGGCTG 57.480 42.857 8.03 0.00 41.91 4.85
215 216 5.975410 GACATAAGTCAATCACTACAGGC 57.025 43.478 0.00 0.00 44.34 4.85
216 217 5.419542 GACATAAGTCAATCACTACAGGCA 58.580 41.667 0.00 0.00 44.34 4.75
217 218 5.994250 ACATAAGTCAATCACTACAGGCAT 58.006 37.500 0.00 0.00 32.30 4.40
218 219 7.124573 ACATAAGTCAATCACTACAGGCATA 57.875 36.000 0.00 0.00 32.30 3.14
219 220 7.739825 ACATAAGTCAATCACTACAGGCATAT 58.260 34.615 0.00 0.00 32.30 1.78
220 221 7.658982 ACATAAGTCAATCACTACAGGCATATG 59.341 37.037 0.00 0.00 32.30 1.78
221 222 4.965814 AGTCAATCACTACAGGCATATGG 58.034 43.478 4.56 0.00 31.37 2.74
222 223 4.655649 AGTCAATCACTACAGGCATATGGA 59.344 41.667 4.56 0.00 31.37 3.41
223 224 5.130975 AGTCAATCACTACAGGCATATGGAA 59.869 40.000 4.56 0.00 31.37 3.53
224 225 5.822519 GTCAATCACTACAGGCATATGGAAA 59.177 40.000 4.56 0.00 0.00 3.13
225 226 5.822519 TCAATCACTACAGGCATATGGAAAC 59.177 40.000 4.56 0.00 0.00 2.78
226 227 4.150897 TCACTACAGGCATATGGAAACC 57.849 45.455 4.56 0.00 0.00 3.27
227 228 3.521531 TCACTACAGGCATATGGAAACCA 59.478 43.478 4.56 0.00 38.19 3.67
228 229 3.879295 CACTACAGGCATATGGAAACCAG 59.121 47.826 4.56 0.00 36.75 4.00
229 230 3.780294 ACTACAGGCATATGGAAACCAGA 59.220 43.478 4.56 0.00 36.75 3.86
230 231 3.737559 ACAGGCATATGGAAACCAGAA 57.262 42.857 4.56 0.00 36.75 3.02
231 232 3.624777 ACAGGCATATGGAAACCAGAAG 58.375 45.455 4.56 0.00 36.75 2.85
232 233 2.360165 CAGGCATATGGAAACCAGAAGC 59.640 50.000 4.56 4.42 38.49 3.86
234 235 2.659428 GCATATGGAAACCAGAAGCCT 58.341 47.619 4.56 0.00 34.02 4.58
235 236 2.360165 GCATATGGAAACCAGAAGCCTG 59.640 50.000 4.56 0.00 34.02 4.85
236 237 2.128771 TATGGAAACCAGAAGCCTGC 57.871 50.000 0.00 0.00 36.75 4.85
237 238 0.407139 ATGGAAACCAGAAGCCTGCT 59.593 50.000 0.00 0.00 36.75 4.24
238 239 1.064003 TGGAAACCAGAAGCCTGCTA 58.936 50.000 0.00 0.00 39.07 3.49
239 240 1.003580 TGGAAACCAGAAGCCTGCTAG 59.996 52.381 0.00 0.00 39.07 3.42
240 241 1.680249 GGAAACCAGAAGCCTGCTAGG 60.680 57.143 0.00 0.00 39.07 3.02
241 242 1.279271 GAAACCAGAAGCCTGCTAGGA 59.721 52.381 10.88 0.00 37.67 2.94
242 243 1.362224 AACCAGAAGCCTGCTAGGAA 58.638 50.000 10.88 0.00 37.67 3.36
243 244 1.589414 ACCAGAAGCCTGCTAGGAAT 58.411 50.000 10.88 0.00 37.67 3.01
244 245 1.211457 ACCAGAAGCCTGCTAGGAATG 59.789 52.381 10.88 0.00 37.67 2.67
245 246 1.211457 CCAGAAGCCTGCTAGGAATGT 59.789 52.381 6.40 0.00 37.67 2.71
246 247 2.435805 CCAGAAGCCTGCTAGGAATGTA 59.564 50.000 6.40 0.00 37.67 2.29
247 248 3.118261 CCAGAAGCCTGCTAGGAATGTAA 60.118 47.826 6.40 0.00 37.67 2.41
248 249 4.445448 CCAGAAGCCTGCTAGGAATGTAAT 60.445 45.833 6.40 0.00 37.67 1.89
249 250 4.754114 CAGAAGCCTGCTAGGAATGTAATC 59.246 45.833 6.40 0.00 37.67 1.75
250 251 4.410228 AGAAGCCTGCTAGGAATGTAATCA 59.590 41.667 6.40 0.00 37.67 2.57
251 252 4.989875 AGCCTGCTAGGAATGTAATCAT 57.010 40.909 6.40 0.00 37.67 2.45
252 253 4.649692 AGCCTGCTAGGAATGTAATCATG 58.350 43.478 6.40 0.00 37.67 3.07
253 254 4.103785 AGCCTGCTAGGAATGTAATCATGT 59.896 41.667 6.40 0.00 37.67 3.21
254 255 4.214971 GCCTGCTAGGAATGTAATCATGTG 59.785 45.833 6.40 0.00 37.67 3.21
255 256 4.214971 CCTGCTAGGAATGTAATCATGTGC 59.785 45.833 0.00 0.00 37.67 4.57
256 257 3.809279 TGCTAGGAATGTAATCATGTGCG 59.191 43.478 0.00 0.00 34.19 5.34
257 258 3.809832 GCTAGGAATGTAATCATGTGCGT 59.190 43.478 0.00 0.00 34.19 5.24
265 266 2.042686 AATCATGTGCGTGCACCTAT 57.957 45.000 21.19 7.21 45.63 2.57
327 328 2.774687 TAGGGTTTTTGCCTCCCGCC 62.775 60.000 0.00 0.00 45.27 6.13
368 369 1.476007 CCTCTCCGATGGCCTTAGGG 61.476 65.000 16.36 9.43 0.00 3.53
369 370 0.760945 CTCTCCGATGGCCTTAGGGT 60.761 60.000 16.36 0.00 34.45 4.34
370 371 0.759436 TCTCCGATGGCCTTAGGGTC 60.759 60.000 16.36 0.00 37.81 4.46
375 376 3.754043 TGGCCTTAGGGTCATGGG 58.246 61.111 3.32 0.00 43.05 4.00
376 377 2.006415 TGGCCTTAGGGTCATGGGG 61.006 63.158 3.32 0.00 43.05 4.96
377 378 2.768022 GGCCTTAGGGTCATGGGGG 61.768 68.421 0.00 0.00 37.14 5.40
378 379 2.927056 CCTTAGGGTCATGGGGGC 59.073 66.667 0.00 0.00 0.00 5.80
379 380 2.510906 CTTAGGGTCATGGGGGCG 59.489 66.667 0.00 0.00 0.00 6.13
380 381 3.774599 CTTAGGGTCATGGGGGCGC 62.775 68.421 0.00 0.00 0.00 6.53
387 388 4.511246 CATGGGGGCGCAGTGGAT 62.511 66.667 10.83 0.00 0.00 3.41
388 389 4.195334 ATGGGGGCGCAGTGGATC 62.195 66.667 10.83 0.00 0.00 3.36
390 391 4.554036 GGGGGCGCAGTGGATCTC 62.554 72.222 10.83 0.00 0.00 2.75
391 392 4.899239 GGGGCGCAGTGGATCTCG 62.899 72.222 10.83 0.00 0.00 4.04
392 393 4.899239 GGGCGCAGTGGATCTCGG 62.899 72.222 10.83 0.00 0.00 4.63
394 395 4.819761 GCGCAGTGGATCTCGGCA 62.820 66.667 0.30 0.00 0.00 5.69
395 396 2.125552 CGCAGTGGATCTCGGCAA 60.126 61.111 11.83 0.00 0.00 4.52
396 397 2.169789 CGCAGTGGATCTCGGCAAG 61.170 63.158 11.83 0.00 0.00 4.01
397 398 1.817099 GCAGTGGATCTCGGCAAGG 60.817 63.158 0.00 0.00 0.00 3.61
398 399 1.153289 CAGTGGATCTCGGCAAGGG 60.153 63.158 0.00 0.00 0.00 3.95
399 400 1.613630 AGTGGATCTCGGCAAGGGT 60.614 57.895 0.00 0.00 0.00 4.34
400 401 1.153349 GTGGATCTCGGCAAGGGTC 60.153 63.158 0.00 0.00 0.00 4.46
401 402 2.107141 GGATCTCGGCAAGGGTCG 59.893 66.667 0.00 0.00 45.31 4.79
402 403 2.107141 GATCTCGGCAAGGGTCGG 59.893 66.667 0.00 0.00 43.76 4.79
403 404 4.162690 ATCTCGGCAAGGGTCGGC 62.163 66.667 0.00 0.00 43.76 5.54
425 426 1.669265 GGAGGGCTCCGTTTTTAATCG 59.331 52.381 0.00 0.00 40.36 3.34
426 427 2.353323 GAGGGCTCCGTTTTTAATCGT 58.647 47.619 0.00 0.00 0.00 3.73
427 428 2.745821 GAGGGCTCCGTTTTTAATCGTT 59.254 45.455 0.00 0.00 0.00 3.85
428 429 3.151554 AGGGCTCCGTTTTTAATCGTTT 58.848 40.909 0.00 0.00 0.00 3.60
429 430 3.189910 AGGGCTCCGTTTTTAATCGTTTC 59.810 43.478 0.00 0.00 0.00 2.78
430 431 3.189910 GGGCTCCGTTTTTAATCGTTTCT 59.810 43.478 0.00 0.00 0.00 2.52
431 432 4.320714 GGGCTCCGTTTTTAATCGTTTCTT 60.321 41.667 0.00 0.00 0.00 2.52
432 433 5.217393 GGCTCCGTTTTTAATCGTTTCTTT 58.783 37.500 0.00 0.00 0.00 2.52
433 434 5.341462 GGCTCCGTTTTTAATCGTTTCTTTC 59.659 40.000 0.00 0.00 0.00 2.62
434 435 5.910723 GCTCCGTTTTTAATCGTTTCTTTCA 59.089 36.000 0.00 0.00 0.00 2.69
435 436 6.086371 GCTCCGTTTTTAATCGTTTCTTTCAG 59.914 38.462 0.00 0.00 0.00 3.02
436 437 7.018635 TCCGTTTTTAATCGTTTCTTTCAGT 57.981 32.000 0.00 0.00 0.00 3.41
437 438 7.474190 TCCGTTTTTAATCGTTTCTTTCAGTT 58.526 30.769 0.00 0.00 0.00 3.16
438 439 7.969508 TCCGTTTTTAATCGTTTCTTTCAGTTT 59.030 29.630 0.00 0.00 0.00 2.66
439 440 8.588789 CCGTTTTTAATCGTTTCTTTCAGTTTT 58.411 29.630 0.00 0.00 0.00 2.43
440 441 9.391794 CGTTTTTAATCGTTTCTTTCAGTTTTG 57.608 29.630 0.00 0.00 0.00 2.44
441 442 9.194716 GTTTTTAATCGTTTCTTTCAGTTTTGC 57.805 29.630 0.00 0.00 0.00 3.68
442 443 8.696410 TTTTAATCGTTTCTTTCAGTTTTGCT 57.304 26.923 0.00 0.00 0.00 3.91
443 444 9.790389 TTTTAATCGTTTCTTTCAGTTTTGCTA 57.210 25.926 0.00 0.00 0.00 3.49
444 445 9.445786 TTTAATCGTTTCTTTCAGTTTTGCTAG 57.554 29.630 0.00 0.00 0.00 3.42
445 446 5.418310 TCGTTTCTTTCAGTTTTGCTAGG 57.582 39.130 0.00 0.00 0.00 3.02
446 447 4.274950 TCGTTTCTTTCAGTTTTGCTAGGG 59.725 41.667 0.00 0.00 0.00 3.53
447 448 4.036380 CGTTTCTTTCAGTTTTGCTAGGGT 59.964 41.667 0.00 0.00 0.00 4.34
448 449 5.449999 CGTTTCTTTCAGTTTTGCTAGGGTT 60.450 40.000 0.00 0.00 0.00 4.11
449 450 6.338146 GTTTCTTTCAGTTTTGCTAGGGTTT 58.662 36.000 0.00 0.00 0.00 3.27
450 451 5.514274 TCTTTCAGTTTTGCTAGGGTTTG 57.486 39.130 0.00 0.00 0.00 2.93
451 452 4.953579 TCTTTCAGTTTTGCTAGGGTTTGT 59.046 37.500 0.00 0.00 0.00 2.83
452 453 4.647424 TTCAGTTTTGCTAGGGTTTGTG 57.353 40.909 0.00 0.00 0.00 3.33
453 454 3.626930 TCAGTTTTGCTAGGGTTTGTGT 58.373 40.909 0.00 0.00 0.00 3.72
454 455 3.630312 TCAGTTTTGCTAGGGTTTGTGTC 59.370 43.478 0.00 0.00 0.00 3.67
455 456 2.956333 AGTTTTGCTAGGGTTTGTGTCC 59.044 45.455 0.00 0.00 0.00 4.02
456 457 2.956333 GTTTTGCTAGGGTTTGTGTCCT 59.044 45.455 0.00 0.00 37.18 3.85
457 458 2.270352 TTGCTAGGGTTTGTGTCCTG 57.730 50.000 0.00 0.00 34.75 3.86
458 459 0.250727 TGCTAGGGTTTGTGTCCTGC 60.251 55.000 0.00 0.00 34.75 4.85
459 460 0.036875 GCTAGGGTTTGTGTCCTGCT 59.963 55.000 0.00 0.00 34.75 4.24
460 461 1.946283 GCTAGGGTTTGTGTCCTGCTC 60.946 57.143 0.00 0.00 34.75 4.26
461 462 1.347707 CTAGGGTTTGTGTCCTGCTCA 59.652 52.381 0.00 0.00 34.75 4.26
462 463 0.109342 AGGGTTTGTGTCCTGCTCAG 59.891 55.000 0.00 0.00 31.11 3.35
473 474 3.712020 CTGCTCAGGAAGACGAGAC 57.288 57.895 0.00 0.00 0.00 3.36
847 857 3.996825 CGCAGCACAAAATACCTCC 57.003 52.632 0.00 0.00 0.00 4.30
857 867 3.576982 ACAAAATACCTCCGTCAGACTCA 59.423 43.478 0.00 0.00 0.00 3.41
873 889 3.012274 AGACTCATTCCTCTTCCTCCTCA 59.988 47.826 0.00 0.00 0.00 3.86
1011 1057 3.474570 GGAGAGATGGCCGGCAGT 61.475 66.667 30.85 16.55 0.00 4.40
1076 1122 3.706373 GGAGGCCTCGGCACTTGA 61.706 66.667 26.36 0.00 44.11 3.02
1138 1184 2.432456 GTGTCGTGGAGCGCATCA 60.432 61.111 11.47 4.01 41.07 3.07
2186 2248 2.045708 GCAATCACATGACGGGGCA 61.046 57.895 0.00 0.00 0.00 5.36
2583 2645 1.987855 CCTCCACTTCCGGGCACTA 60.988 63.158 0.00 0.00 0.00 2.74
4984 5073 0.319900 CCTCGGATCGGGTGCTATTG 60.320 60.000 0.00 0.00 0.00 1.90
5101 5192 1.269936 GCAGGTTGCTTGCTGAAATGT 60.270 47.619 0.00 0.00 40.96 2.71
5236 5327 6.887002 TCACTATATCAGAGAGTGTGTTGAGT 59.113 38.462 0.00 0.00 45.83 3.41
5238 5329 8.031864 CACTATATCAGAGAGTGTGTTGAGTTT 58.968 37.037 0.00 0.00 41.62 2.66
5749 5871 3.996825 CGCAGCACAAAATACCTCC 57.003 52.632 0.00 0.00 0.00 4.30
6059 6181 2.186826 GCGGTTGCTGTTCTGGTGT 61.187 57.895 0.00 0.00 38.39 4.16
6306 6428 4.782019 AAAATGTAATCATGTGCGTGGT 57.218 36.364 0.00 0.00 34.19 4.16
6307 6429 3.763097 AATGTAATCATGTGCGTGGTG 57.237 42.857 0.00 0.00 34.19 4.17
6308 6430 1.447945 TGTAATCATGTGCGTGGTGG 58.552 50.000 0.00 0.00 0.00 4.61
6309 6431 1.002544 TGTAATCATGTGCGTGGTGGA 59.997 47.619 0.00 0.00 0.00 4.02
6310 6432 1.665679 GTAATCATGTGCGTGGTGGAG 59.334 52.381 0.00 0.00 0.00 3.86
6311 6433 0.324614 AATCATGTGCGTGGTGGAGA 59.675 50.000 0.00 0.00 0.00 3.71
6312 6434 0.107993 ATCATGTGCGTGGTGGAGAG 60.108 55.000 0.00 0.00 0.00 3.20
6313 6435 2.046892 ATGTGCGTGGTGGAGAGC 60.047 61.111 0.00 0.00 0.00 4.09
6314 6436 3.612247 ATGTGCGTGGTGGAGAGCC 62.612 63.158 0.00 0.00 0.00 4.70
6323 6445 3.059982 TGGAGAGCCCACACGAAG 58.940 61.111 0.00 0.00 40.82 3.79
6324 6446 2.435059 GGAGAGCCCACACGAAGC 60.435 66.667 0.00 0.00 34.14 3.86
6325 6447 2.659610 GAGAGCCCACACGAAGCT 59.340 61.111 0.00 0.00 40.24 3.74
6326 6448 1.004440 GAGAGCCCACACGAAGCTT 60.004 57.895 0.00 0.00 36.87 3.74
6327 6449 1.004440 AGAGCCCACACGAAGCTTC 60.004 57.895 16.84 16.84 36.87 3.86
6328 6450 2.032681 AGCCCACACGAAGCTTCC 59.967 61.111 20.62 4.76 31.27 3.46
6329 6451 3.423154 GCCCACACGAAGCTTCCG 61.423 66.667 20.62 16.94 0.00 4.30
6330 6452 2.342279 CCCACACGAAGCTTCCGA 59.658 61.111 20.62 0.00 0.00 4.55
6331 6453 2.027625 CCCACACGAAGCTTCCGAC 61.028 63.158 20.62 0.00 0.00 4.79
6332 6454 1.006102 CCACACGAAGCTTCCGACT 60.006 57.895 20.62 0.00 0.00 4.18
6333 6455 1.009389 CCACACGAAGCTTCCGACTC 61.009 60.000 20.62 0.00 0.00 3.36
6334 6456 0.039074 CACACGAAGCTTCCGACTCT 60.039 55.000 20.62 0.00 0.00 3.24
6335 6457 0.039074 ACACGAAGCTTCCGACTCTG 60.039 55.000 20.62 11.52 0.00 3.35
6336 6458 0.241213 CACGAAGCTTCCGACTCTGA 59.759 55.000 20.62 0.00 0.00 3.27
6337 6459 1.135257 CACGAAGCTTCCGACTCTGAT 60.135 52.381 20.62 0.00 0.00 2.90
6338 6460 1.546476 ACGAAGCTTCCGACTCTGATT 59.454 47.619 20.62 0.00 0.00 2.57
6339 6461 1.923204 CGAAGCTTCCGACTCTGATTG 59.077 52.381 20.62 0.00 0.00 2.67
6340 6462 1.663135 GAAGCTTCCGACTCTGATTGC 59.337 52.381 15.97 0.00 0.00 3.56
6341 6463 0.901124 AGCTTCCGACTCTGATTGCT 59.099 50.000 0.00 0.00 0.00 3.91
6342 6464 2.103373 AGCTTCCGACTCTGATTGCTA 58.897 47.619 0.00 0.00 0.00 3.49
6343 6465 2.100584 AGCTTCCGACTCTGATTGCTAG 59.899 50.000 0.00 0.00 0.00 3.42
6344 6466 2.468831 CTTCCGACTCTGATTGCTAGC 58.531 52.381 8.10 8.10 0.00 3.42
6345 6467 1.769026 TCCGACTCTGATTGCTAGCT 58.231 50.000 17.23 0.00 0.00 3.32
6346 6468 2.932261 TCCGACTCTGATTGCTAGCTA 58.068 47.619 17.23 9.14 0.00 3.32
6347 6469 2.619177 TCCGACTCTGATTGCTAGCTAC 59.381 50.000 17.23 7.77 0.00 3.58
6348 6470 2.359214 CCGACTCTGATTGCTAGCTACA 59.641 50.000 17.23 11.84 0.00 2.74
6349 6471 3.549827 CCGACTCTGATTGCTAGCTACAG 60.550 52.174 17.23 19.81 0.00 2.74
6350 6472 3.549827 CGACTCTGATTGCTAGCTACAGG 60.550 52.174 24.30 19.47 0.00 4.00
6351 6473 3.634448 GACTCTGATTGCTAGCTACAGGA 59.366 47.826 24.30 14.30 0.00 3.86
6352 6474 4.026744 ACTCTGATTGCTAGCTACAGGAA 58.973 43.478 24.30 9.95 0.00 3.36
6353 6475 4.467795 ACTCTGATTGCTAGCTACAGGAAA 59.532 41.667 24.30 9.36 29.11 3.13
6354 6476 5.046304 ACTCTGATTGCTAGCTACAGGAAAA 60.046 40.000 24.30 8.77 29.11 2.29
6355 6477 5.804639 TCTGATTGCTAGCTACAGGAAAAA 58.195 37.500 24.30 8.18 29.11 1.94
6356 6478 6.418101 TCTGATTGCTAGCTACAGGAAAAAT 58.582 36.000 24.30 11.77 29.11 1.82
6357 6479 6.317140 TCTGATTGCTAGCTACAGGAAAAATG 59.683 38.462 24.30 8.18 29.11 2.32
6358 6480 5.357878 TGATTGCTAGCTACAGGAAAAATGG 59.642 40.000 17.23 0.00 29.11 3.16
6359 6481 4.568072 TGCTAGCTACAGGAAAAATGGA 57.432 40.909 17.23 0.00 0.00 3.41
6360 6482 5.116084 TGCTAGCTACAGGAAAAATGGAT 57.884 39.130 17.23 0.00 0.00 3.41
6361 6483 4.883585 TGCTAGCTACAGGAAAAATGGATG 59.116 41.667 17.23 0.00 0.00 3.51
6362 6484 4.884164 GCTAGCTACAGGAAAAATGGATGT 59.116 41.667 7.70 0.00 0.00 3.06
6363 6485 5.008118 GCTAGCTACAGGAAAAATGGATGTC 59.992 44.000 7.70 0.00 0.00 3.06
6364 6486 4.273318 AGCTACAGGAAAAATGGATGTCC 58.727 43.478 0.00 0.00 0.00 4.02
6365 6487 4.018050 AGCTACAGGAAAAATGGATGTCCT 60.018 41.667 0.09 0.00 41.30 3.85
6366 6488 4.706962 GCTACAGGAAAAATGGATGTCCTT 59.293 41.667 0.09 0.00 38.48 3.36
6367 6489 5.393461 GCTACAGGAAAAATGGATGTCCTTG 60.393 44.000 0.09 0.00 38.48 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 7.751768 TGGTTGTTTTTCCTTCATTGTTTTT 57.248 28.000 0.00 0.00 0.00 1.94
7 8 7.751768 TTGGTTGTTTTTCCTTCATTGTTTT 57.248 28.000 0.00 0.00 0.00 2.43
8 9 7.751768 TTTGGTTGTTTTTCCTTCATTGTTT 57.248 28.000 0.00 0.00 0.00 2.83
9 10 7.751768 TTTTGGTTGTTTTTCCTTCATTGTT 57.248 28.000 0.00 0.00 0.00 2.83
10 11 7.663493 TCTTTTTGGTTGTTTTTCCTTCATTGT 59.337 29.630 0.00 0.00 0.00 2.71
11 12 8.038492 TCTTTTTGGTTGTTTTTCCTTCATTG 57.962 30.769 0.00 0.00 0.00 2.82
12 13 8.100164 TCTCTTTTTGGTTGTTTTTCCTTCATT 58.900 29.630 0.00 0.00 0.00 2.57
13 14 7.619965 TCTCTTTTTGGTTGTTTTTCCTTCAT 58.380 30.769 0.00 0.00 0.00 2.57
14 15 6.998802 TCTCTTTTTGGTTGTTTTTCCTTCA 58.001 32.000 0.00 0.00 0.00 3.02
15 16 7.817478 TCTTCTCTTTTTGGTTGTTTTTCCTTC 59.183 33.333 0.00 0.00 0.00 3.46
16 17 7.676004 TCTTCTCTTTTTGGTTGTTTTTCCTT 58.324 30.769 0.00 0.00 0.00 3.36
17 18 7.239763 TCTTCTCTTTTTGGTTGTTTTTCCT 57.760 32.000 0.00 0.00 0.00 3.36
18 19 7.386573 TGTTCTTCTCTTTTTGGTTGTTTTTCC 59.613 33.333 0.00 0.00 0.00 3.13
19 20 8.305441 TGTTCTTCTCTTTTTGGTTGTTTTTC 57.695 30.769 0.00 0.00 0.00 2.29
20 21 8.147704 TCTGTTCTTCTCTTTTTGGTTGTTTTT 58.852 29.630 0.00 0.00 0.00 1.94
21 22 7.666623 TCTGTTCTTCTCTTTTTGGTTGTTTT 58.333 30.769 0.00 0.00 0.00 2.43
22 23 7.227049 TCTGTTCTTCTCTTTTTGGTTGTTT 57.773 32.000 0.00 0.00 0.00 2.83
23 24 6.834168 TCTGTTCTTCTCTTTTTGGTTGTT 57.166 33.333 0.00 0.00 0.00 2.83
24 25 6.834168 TTCTGTTCTTCTCTTTTTGGTTGT 57.166 33.333 0.00 0.00 0.00 3.32
25 26 8.532977 TTTTTCTGTTCTTCTCTTTTTGGTTG 57.467 30.769 0.00 0.00 0.00 3.77
55 56 3.142174 GGAAGGTGATATGCAGGTTAGC 58.858 50.000 0.00 0.00 0.00 3.09
56 57 4.503991 GGAGGAAGGTGATATGCAGGTTAG 60.504 50.000 0.00 0.00 0.00 2.34
57 58 3.391296 GGAGGAAGGTGATATGCAGGTTA 59.609 47.826 0.00 0.00 0.00 2.85
58 59 2.173569 GGAGGAAGGTGATATGCAGGTT 59.826 50.000 0.00 0.00 0.00 3.50
59 60 1.771255 GGAGGAAGGTGATATGCAGGT 59.229 52.381 0.00 0.00 0.00 4.00
60 61 1.770658 TGGAGGAAGGTGATATGCAGG 59.229 52.381 0.00 0.00 0.00 4.85
61 62 2.437281 ACTGGAGGAAGGTGATATGCAG 59.563 50.000 0.00 0.00 35.68 4.41
62 63 2.481441 ACTGGAGGAAGGTGATATGCA 58.519 47.619 0.00 0.00 0.00 3.96
63 64 3.567478 AACTGGAGGAAGGTGATATGC 57.433 47.619 0.00 0.00 0.00 3.14
64 65 4.096984 GCAAAACTGGAGGAAGGTGATATG 59.903 45.833 0.00 0.00 0.00 1.78
65 66 4.273318 GCAAAACTGGAGGAAGGTGATAT 58.727 43.478 0.00 0.00 0.00 1.63
66 67 3.561313 GGCAAAACTGGAGGAAGGTGATA 60.561 47.826 0.00 0.00 0.00 2.15
67 68 2.519013 GCAAAACTGGAGGAAGGTGAT 58.481 47.619 0.00 0.00 0.00 3.06
68 69 1.478654 GGCAAAACTGGAGGAAGGTGA 60.479 52.381 0.00 0.00 0.00 4.02
69 70 0.961753 GGCAAAACTGGAGGAAGGTG 59.038 55.000 0.00 0.00 0.00 4.00
70 71 0.853530 AGGCAAAACTGGAGGAAGGT 59.146 50.000 0.00 0.00 0.00 3.50
71 72 1.202927 TCAGGCAAAACTGGAGGAAGG 60.203 52.381 0.00 0.00 38.98 3.46
72 73 2.276732 TCAGGCAAAACTGGAGGAAG 57.723 50.000 0.00 0.00 38.98 3.46
73 74 2.892852 CAATCAGGCAAAACTGGAGGAA 59.107 45.455 0.00 0.00 38.98 3.36
74 75 2.517959 CAATCAGGCAAAACTGGAGGA 58.482 47.619 0.00 0.00 38.98 3.71
75 76 1.547372 CCAATCAGGCAAAACTGGAGG 59.453 52.381 0.00 0.00 38.98 4.30
87 88 4.082125 GTCCCCTAAATATGCCAATCAGG 58.918 47.826 0.00 0.00 41.84 3.86
88 89 4.728772 TGTCCCCTAAATATGCCAATCAG 58.271 43.478 0.00 0.00 0.00 2.90
89 90 4.805140 TGTCCCCTAAATATGCCAATCA 57.195 40.909 0.00 0.00 0.00 2.57
90 91 6.485171 AGTATGTCCCCTAAATATGCCAATC 58.515 40.000 0.00 0.00 0.00 2.67
91 92 6.468972 AGTATGTCCCCTAAATATGCCAAT 57.531 37.500 0.00 0.00 0.00 3.16
92 93 5.922960 AGTATGTCCCCTAAATATGCCAA 57.077 39.130 0.00 0.00 0.00 4.52
93 94 5.487488 CCTAGTATGTCCCCTAAATATGCCA 59.513 44.000 0.00 0.00 0.00 4.92
94 95 5.629366 GCCTAGTATGTCCCCTAAATATGCC 60.629 48.000 0.00 0.00 0.00 4.40
95 96 5.045869 TGCCTAGTATGTCCCCTAAATATGC 60.046 44.000 0.00 0.00 0.00 3.14
96 97 6.013725 TGTGCCTAGTATGTCCCCTAAATATG 60.014 42.308 0.00 0.00 0.00 1.78
97 98 6.013639 GTGTGCCTAGTATGTCCCCTAAATAT 60.014 42.308 0.00 0.00 0.00 1.28
98 99 5.306160 GTGTGCCTAGTATGTCCCCTAAATA 59.694 44.000 0.00 0.00 0.00 1.40
99 100 4.102681 GTGTGCCTAGTATGTCCCCTAAAT 59.897 45.833 0.00 0.00 0.00 1.40
100 101 3.453353 GTGTGCCTAGTATGTCCCCTAAA 59.547 47.826 0.00 0.00 0.00 1.85
101 102 3.036091 GTGTGCCTAGTATGTCCCCTAA 58.964 50.000 0.00 0.00 0.00 2.69
102 103 2.674420 GTGTGCCTAGTATGTCCCCTA 58.326 52.381 0.00 0.00 0.00 3.53
103 104 1.497161 GTGTGCCTAGTATGTCCCCT 58.503 55.000 0.00 0.00 0.00 4.79
104 105 0.104304 CGTGTGCCTAGTATGTCCCC 59.896 60.000 0.00 0.00 0.00 4.81
105 106 1.067212 CTCGTGTGCCTAGTATGTCCC 59.933 57.143 0.00 0.00 0.00 4.46
106 107 1.749634 ACTCGTGTGCCTAGTATGTCC 59.250 52.381 0.00 0.00 0.00 4.02
107 108 2.422479 TGACTCGTGTGCCTAGTATGTC 59.578 50.000 0.00 0.00 0.00 3.06
108 109 2.423892 CTGACTCGTGTGCCTAGTATGT 59.576 50.000 0.00 0.00 0.00 2.29
109 110 2.796383 GCTGACTCGTGTGCCTAGTATG 60.796 54.545 0.00 0.00 0.00 2.39
110 111 1.405821 GCTGACTCGTGTGCCTAGTAT 59.594 52.381 0.00 0.00 0.00 2.12
111 112 0.809385 GCTGACTCGTGTGCCTAGTA 59.191 55.000 0.00 0.00 0.00 1.82
112 113 0.896019 AGCTGACTCGTGTGCCTAGT 60.896 55.000 0.00 0.00 0.00 2.57
113 114 0.179150 GAGCTGACTCGTGTGCCTAG 60.179 60.000 0.00 0.00 32.04 3.02
114 115 1.883732 GAGCTGACTCGTGTGCCTA 59.116 57.895 0.00 0.00 32.04 3.93
115 116 2.653702 GAGCTGACTCGTGTGCCT 59.346 61.111 0.00 0.00 32.04 4.75
123 124 5.482908 TGGAGTTCAATAAAGAGCTGACTC 58.517 41.667 0.00 0.00 43.82 3.36
124 125 5.489792 TGGAGTTCAATAAAGAGCTGACT 57.510 39.130 0.00 0.00 0.00 3.41
125 126 6.749923 AATGGAGTTCAATAAAGAGCTGAC 57.250 37.500 0.00 0.00 0.00 3.51
126 127 7.765695 AAAATGGAGTTCAATAAAGAGCTGA 57.234 32.000 0.00 0.00 0.00 4.26
148 149 6.369340 CAGCCATTGCATTGACATCTTAAAAA 59.631 34.615 10.14 0.00 41.13 1.94
149 150 5.870433 CAGCCATTGCATTGACATCTTAAAA 59.130 36.000 10.14 0.00 41.13 1.52
150 151 5.412640 CAGCCATTGCATTGACATCTTAAA 58.587 37.500 10.14 0.00 41.13 1.52
151 152 5.001237 CAGCCATTGCATTGACATCTTAA 57.999 39.130 10.14 0.00 41.13 1.85
152 153 4.642445 CAGCCATTGCATTGACATCTTA 57.358 40.909 10.14 0.00 41.13 2.10
153 154 3.520290 CAGCCATTGCATTGACATCTT 57.480 42.857 10.14 0.00 41.13 2.40
165 166 4.288670 CAGATAACTTCTGCAGCCATTG 57.711 45.455 9.47 0.00 45.16 2.82
184 185 8.633561 TAGTGATTGACTTATGTCTATGGACAG 58.366 37.037 17.42 6.72 44.28 3.51
185 186 8.414003 GTAGTGATTGACTTATGTCTATGGACA 58.586 37.037 14.80 14.80 44.70 4.02
186 187 8.414003 TGTAGTGATTGACTTATGTCTATGGAC 58.586 37.037 9.77 1.56 43.29 4.02
187 188 8.533569 TGTAGTGATTGACTTATGTCTATGGA 57.466 34.615 9.77 0.00 43.29 3.41
188 189 7.869937 CCTGTAGTGATTGACTTATGTCTATGG 59.130 40.741 9.77 1.44 43.29 2.74
189 190 7.383572 GCCTGTAGTGATTGACTTATGTCTATG 59.616 40.741 9.77 0.00 43.29 2.23
190 191 7.069950 TGCCTGTAGTGATTGACTTATGTCTAT 59.930 37.037 9.87 7.69 43.29 1.98
191 192 6.379988 TGCCTGTAGTGATTGACTTATGTCTA 59.620 38.462 9.87 3.15 43.29 2.59
192 193 5.187772 TGCCTGTAGTGATTGACTTATGTCT 59.812 40.000 9.87 0.00 43.29 3.41
193 194 5.419542 TGCCTGTAGTGATTGACTTATGTC 58.580 41.667 1.85 1.85 43.20 3.06
194 195 5.420725 TGCCTGTAGTGATTGACTTATGT 57.579 39.130 0.00 0.00 35.96 2.29
195 196 7.118825 CCATATGCCTGTAGTGATTGACTTATG 59.881 40.741 0.00 0.00 35.96 1.90
196 197 7.016563 TCCATATGCCTGTAGTGATTGACTTAT 59.983 37.037 0.00 0.00 35.96 1.73
197 198 6.326323 TCCATATGCCTGTAGTGATTGACTTA 59.674 38.462 0.00 0.00 35.96 2.24
198 199 5.130975 TCCATATGCCTGTAGTGATTGACTT 59.869 40.000 0.00 0.00 35.96 3.01
199 200 4.655649 TCCATATGCCTGTAGTGATTGACT 59.344 41.667 0.00 0.00 38.88 3.41
200 201 4.960938 TCCATATGCCTGTAGTGATTGAC 58.039 43.478 0.00 0.00 0.00 3.18
201 202 5.628797 TTCCATATGCCTGTAGTGATTGA 57.371 39.130 0.00 0.00 0.00 2.57
202 203 5.009010 GGTTTCCATATGCCTGTAGTGATTG 59.991 44.000 0.00 0.00 0.00 2.67
203 204 5.133221 GGTTTCCATATGCCTGTAGTGATT 58.867 41.667 0.00 0.00 0.00 2.57
204 205 4.165950 TGGTTTCCATATGCCTGTAGTGAT 59.834 41.667 0.00 0.00 0.00 3.06
205 206 3.521531 TGGTTTCCATATGCCTGTAGTGA 59.478 43.478 0.00 0.00 0.00 3.41
206 207 3.879295 CTGGTTTCCATATGCCTGTAGTG 59.121 47.826 0.00 0.00 30.82 2.74
207 208 3.780294 TCTGGTTTCCATATGCCTGTAGT 59.220 43.478 0.00 0.00 30.82 2.73
208 209 4.422073 TCTGGTTTCCATATGCCTGTAG 57.578 45.455 0.00 0.00 30.82 2.74
209 210 4.780815 CTTCTGGTTTCCATATGCCTGTA 58.219 43.478 0.00 0.00 30.82 2.74
210 211 3.624777 CTTCTGGTTTCCATATGCCTGT 58.375 45.455 0.00 0.00 30.82 4.00
211 212 2.360165 GCTTCTGGTTTCCATATGCCTG 59.640 50.000 0.00 0.00 30.82 4.85
212 213 2.659428 GCTTCTGGTTTCCATATGCCT 58.341 47.619 0.00 0.00 30.82 4.75
213 214 1.683385 GGCTTCTGGTTTCCATATGCC 59.317 52.381 12.57 12.57 41.20 4.40
214 215 2.360165 CAGGCTTCTGGTTTCCATATGC 59.640 50.000 0.00 4.35 34.96 3.14
215 216 2.360165 GCAGGCTTCTGGTTTCCATATG 59.640 50.000 0.00 0.00 38.87 1.78
216 217 2.243221 AGCAGGCTTCTGGTTTCCATAT 59.757 45.455 0.00 0.00 45.85 1.78
217 218 1.635487 AGCAGGCTTCTGGTTTCCATA 59.365 47.619 0.00 0.00 45.85 2.74
218 219 0.407139 AGCAGGCTTCTGGTTTCCAT 59.593 50.000 0.00 0.00 45.85 3.41
219 220 1.003580 CTAGCAGGCTTCTGGTTTCCA 59.996 52.381 0.00 0.00 45.85 3.53
220 221 1.680249 CCTAGCAGGCTTCTGGTTTCC 60.680 57.143 0.00 0.00 45.85 3.13
221 222 1.279271 TCCTAGCAGGCTTCTGGTTTC 59.721 52.381 0.00 0.00 45.85 2.78
222 223 1.362224 TCCTAGCAGGCTTCTGGTTT 58.638 50.000 0.00 0.00 45.85 3.27
223 224 1.362224 TTCCTAGCAGGCTTCTGGTT 58.638 50.000 0.00 0.00 45.85 3.67
225 226 1.211457 ACATTCCTAGCAGGCTTCTGG 59.789 52.381 0.00 0.00 38.87 3.86
226 227 2.706339 ACATTCCTAGCAGGCTTCTG 57.294 50.000 0.00 0.00 41.30 3.02
227 228 4.410228 TGATTACATTCCTAGCAGGCTTCT 59.590 41.667 0.00 0.00 34.61 2.85
228 229 4.708177 TGATTACATTCCTAGCAGGCTTC 58.292 43.478 0.00 0.00 34.61 3.86
229 230 4.778213 TGATTACATTCCTAGCAGGCTT 57.222 40.909 0.00 0.00 34.61 4.35
230 231 4.103785 ACATGATTACATTCCTAGCAGGCT 59.896 41.667 0.00 0.00 32.78 4.58
231 232 4.214971 CACATGATTACATTCCTAGCAGGC 59.785 45.833 0.00 0.00 32.78 4.85
232 233 4.214971 GCACATGATTACATTCCTAGCAGG 59.785 45.833 0.00 0.00 34.15 4.85
233 234 4.084171 CGCACATGATTACATTCCTAGCAG 60.084 45.833 0.00 0.00 34.15 4.24
234 235 3.809279 CGCACATGATTACATTCCTAGCA 59.191 43.478 0.00 0.00 34.15 3.49
235 236 3.809832 ACGCACATGATTACATTCCTAGC 59.190 43.478 0.00 0.00 34.15 3.42
236 237 4.319046 GCACGCACATGATTACATTCCTAG 60.319 45.833 0.00 0.00 34.15 3.02
237 238 3.559655 GCACGCACATGATTACATTCCTA 59.440 43.478 0.00 0.00 34.15 2.94
238 239 2.355756 GCACGCACATGATTACATTCCT 59.644 45.455 0.00 0.00 34.15 3.36
239 240 2.097304 TGCACGCACATGATTACATTCC 59.903 45.455 0.00 0.00 34.15 3.01
240 241 3.100817 GTGCACGCACATGATTACATTC 58.899 45.455 17.03 0.00 45.53 2.67
241 242 3.135414 GTGCACGCACATGATTACATT 57.865 42.857 17.03 0.00 45.53 2.71
242 243 2.830772 GTGCACGCACATGATTACAT 57.169 45.000 17.03 0.00 45.53 2.29
252 253 2.237751 CGCCTATAGGTGCACGCAC 61.238 63.158 19.14 13.78 45.49 5.34
253 254 2.106131 CGCCTATAGGTGCACGCA 59.894 61.111 19.14 0.42 39.04 5.24
281 282 0.336737 GTGGAGGAGAAGGAGGAGGA 59.663 60.000 0.00 0.00 0.00 3.71
370 371 4.511246 ATCCACTGCGCCCCCATG 62.511 66.667 4.18 0.00 0.00 3.66
371 372 4.195334 GATCCACTGCGCCCCCAT 62.195 66.667 4.18 0.00 0.00 4.00
373 374 4.554036 GAGATCCACTGCGCCCCC 62.554 72.222 4.18 0.00 0.00 5.40
374 375 4.899239 CGAGATCCACTGCGCCCC 62.899 72.222 4.18 0.00 0.00 5.80
375 376 4.899239 CCGAGATCCACTGCGCCC 62.899 72.222 4.18 0.00 0.00 6.13
377 378 4.819761 TGCCGAGATCCACTGCGC 62.820 66.667 0.00 0.00 0.00 6.09
378 379 2.125552 TTGCCGAGATCCACTGCG 60.126 61.111 0.00 0.00 0.00 5.18
379 380 1.817099 CCTTGCCGAGATCCACTGC 60.817 63.158 0.00 0.00 0.00 4.40
380 381 1.153289 CCCTTGCCGAGATCCACTG 60.153 63.158 0.00 0.00 0.00 3.66
381 382 1.613630 ACCCTTGCCGAGATCCACT 60.614 57.895 0.00 0.00 0.00 4.00
382 383 1.153349 GACCCTTGCCGAGATCCAC 60.153 63.158 0.00 0.00 0.00 4.02
383 384 2.721167 CGACCCTTGCCGAGATCCA 61.721 63.158 0.00 0.00 0.00 3.41
384 385 2.107141 CGACCCTTGCCGAGATCC 59.893 66.667 0.00 0.00 0.00 3.36
385 386 2.107141 CCGACCCTTGCCGAGATC 59.893 66.667 0.00 0.00 0.00 2.75
386 387 4.162690 GCCGACCCTTGCCGAGAT 62.163 66.667 0.00 0.00 0.00 2.75
404 405 2.022195 GATTAAAAACGGAGCCCTCCC 58.978 52.381 8.68 0.00 46.96 4.30
405 406 1.669265 CGATTAAAAACGGAGCCCTCC 59.331 52.381 4.19 4.19 46.18 4.30
406 407 2.353323 ACGATTAAAAACGGAGCCCTC 58.647 47.619 0.00 0.00 0.00 4.30
407 408 2.484742 ACGATTAAAAACGGAGCCCT 57.515 45.000 0.00 0.00 0.00 5.19
408 409 3.189910 AGAAACGATTAAAAACGGAGCCC 59.810 43.478 0.00 0.00 0.00 5.19
409 410 4.414999 AGAAACGATTAAAAACGGAGCC 57.585 40.909 0.00 0.00 0.00 4.70
410 411 5.910723 TGAAAGAAACGATTAAAAACGGAGC 59.089 36.000 0.00 0.00 0.00 4.70
411 412 7.130269 ACTGAAAGAAACGATTAAAAACGGAG 58.870 34.615 0.00 0.00 37.43 4.63
412 413 7.018635 ACTGAAAGAAACGATTAAAAACGGA 57.981 32.000 0.00 0.00 37.43 4.69
413 414 7.673810 AACTGAAAGAAACGATTAAAAACGG 57.326 32.000 0.00 0.00 37.43 4.44
414 415 9.391794 CAAAACTGAAAGAAACGATTAAAAACG 57.608 29.630 0.00 0.00 37.43 3.60
415 416 9.194716 GCAAAACTGAAAGAAACGATTAAAAAC 57.805 29.630 0.00 0.00 37.43 2.43
416 417 9.145865 AGCAAAACTGAAAGAAACGATTAAAAA 57.854 25.926 0.00 0.00 37.43 1.94
417 418 8.696410 AGCAAAACTGAAAGAAACGATTAAAA 57.304 26.923 0.00 0.00 37.43 1.52
418 419 9.445786 CTAGCAAAACTGAAAGAAACGATTAAA 57.554 29.630 0.00 0.00 37.43 1.52
419 420 8.073768 CCTAGCAAAACTGAAAGAAACGATTAA 58.926 33.333 0.00 0.00 37.43 1.40
420 421 7.308348 CCCTAGCAAAACTGAAAGAAACGATTA 60.308 37.037 0.00 0.00 37.43 1.75
421 422 6.438763 CCTAGCAAAACTGAAAGAAACGATT 58.561 36.000 0.00 0.00 37.43 3.34
422 423 5.048713 CCCTAGCAAAACTGAAAGAAACGAT 60.049 40.000 0.00 0.00 37.43 3.73
423 424 4.274950 CCCTAGCAAAACTGAAAGAAACGA 59.725 41.667 0.00 0.00 37.43 3.85
424 425 4.036380 ACCCTAGCAAAACTGAAAGAAACG 59.964 41.667 0.00 0.00 37.43 3.60
425 426 5.515797 ACCCTAGCAAAACTGAAAGAAAC 57.484 39.130 0.00 0.00 37.43 2.78
426 427 6.071051 ACAAACCCTAGCAAAACTGAAAGAAA 60.071 34.615 0.00 0.00 37.43 2.52
427 428 5.420739 ACAAACCCTAGCAAAACTGAAAGAA 59.579 36.000 0.00 0.00 37.43 2.52
428 429 4.953579 ACAAACCCTAGCAAAACTGAAAGA 59.046 37.500 0.00 0.00 37.43 2.52
429 430 5.043248 CACAAACCCTAGCAAAACTGAAAG 58.957 41.667 0.00 0.00 42.29 2.62
430 431 4.464597 ACACAAACCCTAGCAAAACTGAAA 59.535 37.500 0.00 0.00 0.00 2.69
431 432 4.020543 ACACAAACCCTAGCAAAACTGAA 58.979 39.130 0.00 0.00 0.00 3.02
432 433 3.626930 ACACAAACCCTAGCAAAACTGA 58.373 40.909 0.00 0.00 0.00 3.41
433 434 3.243401 GGACACAAACCCTAGCAAAACTG 60.243 47.826 0.00 0.00 0.00 3.16
434 435 2.956333 GGACACAAACCCTAGCAAAACT 59.044 45.455 0.00 0.00 0.00 2.66
435 436 2.956333 AGGACACAAACCCTAGCAAAAC 59.044 45.455 0.00 0.00 0.00 2.43
436 437 2.955660 CAGGACACAAACCCTAGCAAAA 59.044 45.455 0.00 0.00 0.00 2.44
437 438 2.582052 CAGGACACAAACCCTAGCAAA 58.418 47.619 0.00 0.00 0.00 3.68
438 439 1.817740 GCAGGACACAAACCCTAGCAA 60.818 52.381 0.00 0.00 31.50 3.91
439 440 0.250727 GCAGGACACAAACCCTAGCA 60.251 55.000 0.00 0.00 31.50 3.49
440 441 0.036875 AGCAGGACACAAACCCTAGC 59.963 55.000 0.00 0.00 0.00 3.42
441 442 1.347707 TGAGCAGGACACAAACCCTAG 59.652 52.381 0.00 0.00 0.00 3.02
442 443 1.347707 CTGAGCAGGACACAAACCCTA 59.652 52.381 0.00 0.00 0.00 3.53
443 444 0.109342 CTGAGCAGGACACAAACCCT 59.891 55.000 0.00 0.00 0.00 4.34
444 445 2.633860 CTGAGCAGGACACAAACCC 58.366 57.895 0.00 0.00 0.00 4.11
455 456 0.179176 CGTCTCGTCTTCCTGAGCAG 60.179 60.000 0.00 0.00 32.20 4.24
456 457 0.889638 ACGTCTCGTCTTCCTGAGCA 60.890 55.000 0.00 0.00 33.69 4.26
457 458 0.455295 CACGTCTCGTCTTCCTGAGC 60.455 60.000 0.00 0.00 38.32 4.26
458 459 0.875728 ACACGTCTCGTCTTCCTGAG 59.124 55.000 0.00 0.00 38.32 3.35
459 460 1.315690 AACACGTCTCGTCTTCCTGA 58.684 50.000 0.00 0.00 38.32 3.86
460 461 2.483106 TCTAACACGTCTCGTCTTCCTG 59.517 50.000 0.00 0.00 38.32 3.86
461 462 2.775890 TCTAACACGTCTCGTCTTCCT 58.224 47.619 0.00 0.00 38.32 3.36
462 463 3.761311 ATCTAACACGTCTCGTCTTCC 57.239 47.619 0.00 0.00 38.32 3.46
463 464 6.629649 CAGATTATCTAACACGTCTCGTCTTC 59.370 42.308 0.00 0.00 38.32 2.87
464 465 6.487960 CAGATTATCTAACACGTCTCGTCTT 58.512 40.000 0.00 0.00 38.32 3.01
465 466 5.504337 GCAGATTATCTAACACGTCTCGTCT 60.504 44.000 0.00 0.00 38.32 4.18
466 467 4.671516 GCAGATTATCTAACACGTCTCGTC 59.328 45.833 0.00 0.00 38.32 4.20
467 468 4.335874 AGCAGATTATCTAACACGTCTCGT 59.664 41.667 0.00 0.00 42.36 4.18
468 469 4.849883 AGCAGATTATCTAACACGTCTCG 58.150 43.478 0.00 0.00 0.00 4.04
469 470 5.683743 GTGAGCAGATTATCTAACACGTCTC 59.316 44.000 0.00 0.00 0.00 3.36
470 471 5.125578 TGTGAGCAGATTATCTAACACGTCT 59.874 40.000 15.09 0.00 31.06 4.18
471 472 5.230306 GTGTGAGCAGATTATCTAACACGTC 59.770 44.000 15.09 10.18 31.06 4.34
472 473 5.103000 GTGTGAGCAGATTATCTAACACGT 58.897 41.667 15.09 0.00 31.06 4.49
473 474 5.004821 GTGTGTGAGCAGATTATCTAACACG 59.995 44.000 17.03 0.00 39.55 4.49
847 857 2.757868 AGGAAGAGGAATGAGTCTGACG 59.242 50.000 1.52 0.00 0.00 4.35
857 867 2.534042 TCGTGAGGAGGAAGAGGAAT 57.466 50.000 0.00 0.00 0.00 3.01
873 889 1.133761 TGAGGAGGAAGATCGGATCGT 60.134 52.381 12.08 9.22 0.00 3.73
1011 1057 5.661056 TCTTCTTCGCCTTCTCTTTATCA 57.339 39.130 0.00 0.00 0.00 2.15
1814 1876 0.536460 TCCGTGGAAGTTCTTTGCCC 60.536 55.000 2.25 0.00 0.00 5.36
2583 2645 2.048597 TTCGCGCCAAGATCGTGT 60.049 55.556 0.00 0.00 38.45 4.49
3540 3608 2.003658 CTGGCGCAGTTGGTGTTGTT 62.004 55.000 10.83 0.00 0.00 2.83
3711 3800 3.325201 GAAATCCTCGCCGGTGGGT 62.325 63.158 15.14 1.83 34.97 4.51
3883 3972 0.982852 TCCATCTCCGCCTCCATTGT 60.983 55.000 0.00 0.00 0.00 2.71
5101 5192 3.201266 ACCTTCTGAACTGTTGTACCCAA 59.799 43.478 0.00 0.00 0.00 4.12
5236 5327 1.375396 CGACATCCACTCGCCCAAA 60.375 57.895 0.00 0.00 0.00 3.28
5238 5329 2.994995 ACGACATCCACTCGCCCA 60.995 61.111 0.00 0.00 34.34 5.36
5749 5871 2.757868 AGGAAGAGGAATGAGTCTGACG 59.242 50.000 1.52 0.00 0.00 4.35
5909 6031 2.034066 CTCCACACGCCCACCAAT 59.966 61.111 0.00 0.00 0.00 3.16
6021 6143 2.351726 GCCGCAGATGAAGAATAACGTT 59.648 45.455 5.88 5.88 0.00 3.99
6289 6411 1.002544 TCCACCACGCACATGATTACA 59.997 47.619 0.00 0.00 0.00 2.41
6290 6412 1.665679 CTCCACCACGCACATGATTAC 59.334 52.381 0.00 0.00 0.00 1.89
6291 6413 1.552792 TCTCCACCACGCACATGATTA 59.447 47.619 0.00 0.00 0.00 1.75
6292 6414 0.324614 TCTCCACCACGCACATGATT 59.675 50.000 0.00 0.00 0.00 2.57
6293 6415 0.107993 CTCTCCACCACGCACATGAT 60.108 55.000 0.00 0.00 0.00 2.45
6294 6416 1.293179 CTCTCCACCACGCACATGA 59.707 57.895 0.00 0.00 0.00 3.07
6295 6417 2.393768 GCTCTCCACCACGCACATG 61.394 63.158 0.00 0.00 0.00 3.21
6296 6418 2.046892 GCTCTCCACCACGCACAT 60.047 61.111 0.00 0.00 0.00 3.21
6297 6419 4.314440 GGCTCTCCACCACGCACA 62.314 66.667 0.00 0.00 0.00 4.57
6306 6428 3.059982 CTTCGTGTGGGCTCTCCA 58.940 61.111 0.00 0.00 44.79 3.86
6307 6429 2.435059 GCTTCGTGTGGGCTCTCC 60.435 66.667 0.00 0.00 0.00 3.71
6308 6430 1.004440 AAGCTTCGTGTGGGCTCTC 60.004 57.895 0.00 0.00 35.06 3.20
6309 6431 1.004440 GAAGCTTCGTGTGGGCTCT 60.004 57.895 11.40 0.00 35.06 4.09
6310 6432 2.035442 GGAAGCTTCGTGTGGGCTC 61.035 63.158 19.91 0.00 35.06 4.70
6311 6433 2.032681 GGAAGCTTCGTGTGGGCT 59.967 61.111 19.91 0.00 37.99 5.19
6312 6434 3.423154 CGGAAGCTTCGTGTGGGC 61.423 66.667 19.91 3.61 0.00 5.36
6313 6435 2.027625 GTCGGAAGCTTCGTGTGGG 61.028 63.158 19.91 5.35 0.00 4.61
6314 6436 1.006102 AGTCGGAAGCTTCGTGTGG 60.006 57.895 19.91 7.00 0.00 4.17
6315 6437 0.039074 AGAGTCGGAAGCTTCGTGTG 60.039 55.000 19.91 9.88 0.00 3.82
6316 6438 0.039074 CAGAGTCGGAAGCTTCGTGT 60.039 55.000 19.91 4.74 0.00 4.49
6317 6439 0.241213 TCAGAGTCGGAAGCTTCGTG 59.759 55.000 19.91 14.71 0.00 4.35
6318 6440 1.178276 ATCAGAGTCGGAAGCTTCGT 58.822 50.000 19.91 4.74 0.00 3.85
6319 6441 1.923204 CAATCAGAGTCGGAAGCTTCG 59.077 52.381 19.91 14.82 0.00 3.79
6320 6442 1.663135 GCAATCAGAGTCGGAAGCTTC 59.337 52.381 18.54 18.54 0.00 3.86
6321 6443 1.277557 AGCAATCAGAGTCGGAAGCTT 59.722 47.619 14.69 0.00 0.00 3.74
6322 6444 0.901124 AGCAATCAGAGTCGGAAGCT 59.099 50.000 14.69 14.69 0.00 3.74
6323 6445 2.468831 CTAGCAATCAGAGTCGGAAGC 58.531 52.381 11.35 11.35 0.00 3.86
6324 6446 2.100584 AGCTAGCAATCAGAGTCGGAAG 59.899 50.000 18.83 0.00 0.00 3.46
6325 6447 2.103373 AGCTAGCAATCAGAGTCGGAA 58.897 47.619 18.83 0.00 0.00 4.30
6326 6448 1.769026 AGCTAGCAATCAGAGTCGGA 58.231 50.000 18.83 0.00 0.00 4.55
6327 6449 2.359214 TGTAGCTAGCAATCAGAGTCGG 59.641 50.000 18.83 0.00 0.00 4.79
6328 6450 3.549827 CCTGTAGCTAGCAATCAGAGTCG 60.550 52.174 24.81 11.61 0.00 4.18
6329 6451 3.634448 TCCTGTAGCTAGCAATCAGAGTC 59.366 47.826 24.81 5.66 0.00 3.36
6330 6452 3.636679 TCCTGTAGCTAGCAATCAGAGT 58.363 45.455 24.81 5.06 0.00 3.24
6331 6453 4.662468 TTCCTGTAGCTAGCAATCAGAG 57.338 45.455 24.81 17.83 0.00 3.35
6332 6454 5.420725 TTTTCCTGTAGCTAGCAATCAGA 57.579 39.130 24.81 12.19 0.00 3.27
6333 6455 6.459298 CCATTTTTCCTGTAGCTAGCAATCAG 60.459 42.308 18.83 19.37 0.00 2.90
6334 6456 5.357878 CCATTTTTCCTGTAGCTAGCAATCA 59.642 40.000 18.83 11.43 0.00 2.57
6335 6457 5.590259 TCCATTTTTCCTGTAGCTAGCAATC 59.410 40.000 18.83 7.16 0.00 2.67
6336 6458 5.509498 TCCATTTTTCCTGTAGCTAGCAAT 58.491 37.500 18.83 0.00 0.00 3.56
6337 6459 4.917385 TCCATTTTTCCTGTAGCTAGCAA 58.083 39.130 18.83 0.00 0.00 3.91
6338 6460 4.568072 TCCATTTTTCCTGTAGCTAGCA 57.432 40.909 18.83 0.00 0.00 3.49
6339 6461 4.884164 ACATCCATTTTTCCTGTAGCTAGC 59.116 41.667 6.62 6.62 0.00 3.42
6340 6462 5.529060 GGACATCCATTTTTCCTGTAGCTAG 59.471 44.000 0.00 0.00 35.64 3.42
6341 6463 5.191722 AGGACATCCATTTTTCCTGTAGCTA 59.808 40.000 0.00 0.00 37.09 3.32
6342 6464 4.018050 AGGACATCCATTTTTCCTGTAGCT 60.018 41.667 0.00 0.00 37.09 3.32
6343 6465 4.273318 AGGACATCCATTTTTCCTGTAGC 58.727 43.478 0.00 0.00 37.09 3.58
6344 6466 6.199937 CAAGGACATCCATTTTTCCTGTAG 57.800 41.667 0.00 0.00 38.55 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.