Multiple sequence alignment - TraesCS3B01G582000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G582000 chr3B 100.000 3281 0 0 974 4254 810334043 810337323 0.000000e+00 6059.0
1 TraesCS3B01G582000 chr3B 93.237 1109 61 6 2798 3895 810378785 810379890 0.000000e+00 1620.0
2 TraesCS3B01G582000 chr3B 87.524 1042 102 15 2866 3895 810522600 810523625 0.000000e+00 1179.0
3 TraesCS3B01G582000 chr3B 88.517 688 72 6 2789 3475 810411078 810411759 0.000000e+00 826.0
4 TraesCS3B01G582000 chr3B 100.000 433 0 0 1 433 810333070 810333502 0.000000e+00 800.0
5 TraesCS3B01G582000 chr3B 86.687 661 80 7 2828 3487 810461087 810461740 0.000000e+00 726.0
6 TraesCS3B01G582000 chr3B 85.321 545 56 12 1082 1611 810399365 810399900 3.740000e-150 542.0
7 TraesCS3B01G582000 chr3B 78.204 913 119 45 1086 1972 810370159 810371017 1.060000e-140 510.0
8 TraesCS3B01G582000 chr3B 85.294 374 37 8 3531 3892 810461742 810462109 1.870000e-98 370.0
9 TraesCS3B01G582000 chr3B 87.324 284 24 7 3531 3809 810411777 810412053 8.880000e-82 315.0
10 TraesCS3B01G582000 chr3B 86.207 203 17 7 3892 4085 810523667 810523867 4.310000e-50 209.0
11 TraesCS3B01G582000 chr3B 85.149 202 21 2 3892 4085 810462154 810462354 9.330000e-47 198.0
12 TraesCS3B01G582000 chr3B 90.667 150 5 4 3892 4033 810379929 810380077 1.560000e-44 191.0
13 TraesCS3B01G582000 chr3A 92.754 2139 99 12 1768 3895 732699308 732701401 0.000000e+00 3040.0
14 TraesCS3B01G582000 chr3A 83.935 1301 104 48 974 2189 732697995 732699275 0.000000e+00 1147.0
15 TraesCS3B01G582000 chr3A 88.351 661 69 7 2828 3487 732739088 732739741 0.000000e+00 787.0
16 TraesCS3B01G582000 chr3A 92.674 546 34 6 2300 2843 732729562 732730103 0.000000e+00 782.0
17 TraesCS3B01G582000 chr3A 83.489 854 80 24 1082 1889 732736897 732737735 0.000000e+00 739.0
18 TraesCS3B01G582000 chr3A 79.456 1066 118 61 1082 2107 732727961 732728965 0.000000e+00 662.0
19 TraesCS3B01G582000 chr3A 79.270 767 118 22 2757 3499 732753106 732753855 8.210000e-137 497.0
20 TraesCS3B01G582000 chr3A 85.904 376 37 10 3531 3895 732739743 732740113 1.860000e-103 387.0
21 TraesCS3B01G582000 chr3A 82.609 414 33 17 3 391 732697133 732697532 3.170000e-86 329.0
22 TraesCS3B01G582000 chr3A 86.567 201 19 3 3892 4085 732740155 732740354 9.260000e-52 215.0
23 TraesCS3B01G582000 chr3A 84.729 203 3 8 3892 4085 732701440 732701623 1.220000e-40 178.0
24 TraesCS3B01G582000 chr3D 96.653 1703 42 7 2207 3895 603408603 603406902 0.000000e+00 2815.0
25 TraesCS3B01G582000 chr3D 94.131 1278 66 5 1813 3083 603374861 603373586 0.000000e+00 1936.0
26 TraesCS3B01G582000 chr3D 91.566 664 26 16 974 1612 603409889 603409231 0.000000e+00 889.0
27 TraesCS3B01G582000 chr3D 89.286 700 60 8 2789 3487 603372335 603371650 0.000000e+00 863.0
28 TraesCS3B01G582000 chr3D 79.908 1085 122 46 1180 2189 603375968 603374905 0.000000e+00 708.0
29 TraesCS3B01G582000 chr3D 85.484 434 30 19 3 412 603410574 603410150 5.090000e-114 422.0
30 TraesCS3B01G582000 chr3D 86.472 377 33 10 3531 3895 603371648 603371278 8.570000e-107 398.0
31 TraesCS3B01G582000 chr3D 77.548 628 79 28 1597 2177 603409215 603408603 5.310000e-84 322.0
32 TraesCS3B01G582000 chr3D 92.611 203 5 5 3892 4085 603406863 603406662 2.500000e-72 283.0
33 TraesCS3B01G582000 chr3D 82.836 134 10 4 2410 2542 603393977 603393856 1.620000e-19 108.0
34 TraesCS3B01G582000 chr3D 86.842 76 7 3 23 98 603410654 603410582 9.800000e-12 82.4
35 TraesCS3B01G582000 chr3D 96.774 31 1 0 3612 3642 603374431 603374461 8.000000e-03 52.8
36 TraesCS3B01G582000 chr2B 80.928 388 61 7 1759 2144 47660798 47660422 1.160000e-75 294.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G582000 chr3B 810333070 810337323 4253 False 3429.500000 6059 100.000000 1 4254 2 chr3B.!!$F3 4253
1 TraesCS3B01G582000 chr3B 810378785 810380077 1292 False 905.500000 1620 91.952000 2798 4033 2 chr3B.!!$F4 1235
2 TraesCS3B01G582000 chr3B 810522600 810523867 1267 False 694.000000 1179 86.865500 2866 4085 2 chr3B.!!$F7 1219
3 TraesCS3B01G582000 chr3B 810411078 810412053 975 False 570.500000 826 87.920500 2789 3809 2 chr3B.!!$F5 1020
4 TraesCS3B01G582000 chr3B 810399365 810399900 535 False 542.000000 542 85.321000 1082 1611 1 chr3B.!!$F2 529
5 TraesCS3B01G582000 chr3B 810370159 810371017 858 False 510.000000 510 78.204000 1086 1972 1 chr3B.!!$F1 886
6 TraesCS3B01G582000 chr3B 810461087 810462354 1267 False 431.333333 726 85.710000 2828 4085 3 chr3B.!!$F6 1257
7 TraesCS3B01G582000 chr3A 732697133 732701623 4490 False 1173.500000 3040 86.006750 3 4085 4 chr3A.!!$F2 4082
8 TraesCS3B01G582000 chr3A 732727961 732730103 2142 False 722.000000 782 86.065000 1082 2843 2 chr3A.!!$F3 1761
9 TraesCS3B01G582000 chr3A 732736897 732740354 3457 False 532.000000 787 86.077750 1082 4085 4 chr3A.!!$F4 3003
10 TraesCS3B01G582000 chr3A 732753106 732753855 749 False 497.000000 497 79.270000 2757 3499 1 chr3A.!!$F1 742
11 TraesCS3B01G582000 chr3D 603371278 603375968 4690 True 976.250000 1936 87.449250 1180 3895 4 chr3D.!!$R2 2715
12 TraesCS3B01G582000 chr3D 603406662 603410654 3992 True 802.233333 2815 88.450667 3 4085 6 chr3D.!!$R3 4082

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
27 106 2.106338 TCCACACCAGCTTTCAATCTCA 59.894 45.455 0.00 0.0 0.00 3.27 F
1327 1494 0.388649 CTCGTCCTCTTGTCGGTTGG 60.389 60.000 0.00 0.0 0.00 3.77 F
1334 1501 2.488153 CCTCTTGTCGGTTGGATTTTCC 59.512 50.000 0.00 0.0 36.96 3.13 F
2442 3626 0.098200 CAGCCACTGCATTGACATCG 59.902 55.000 5.49 0.0 41.13 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2010 2782 1.259609 TGGCTCAATGAAAGCAAGGG 58.740 50.000 0.00 0.0 41.66 3.95 R
2147 2919 1.052617 TTGGATTCACCGGTCAGACA 58.947 50.000 2.59 0.0 42.61 3.41 R
2919 6001 1.153349 GGAAGGATCCGCTGGTGAC 60.153 63.158 5.98 0.0 35.59 3.67 R
3822 6936 1.160137 CGGCTTCTGAAAGTTGGGAG 58.840 55.000 0.00 0.0 34.79 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 106 2.106338 TCCACACCAGCTTTCAATCTCA 59.894 45.455 0.00 0.00 0.00 3.27
35 114 5.122396 ACCAGCTTTCAATCTCACGTAATTC 59.878 40.000 0.00 0.00 0.00 2.17
36 115 5.122239 CCAGCTTTCAATCTCACGTAATTCA 59.878 40.000 0.00 0.00 0.00 2.57
37 116 6.348458 CCAGCTTTCAATCTCACGTAATTCAA 60.348 38.462 0.00 0.00 0.00 2.69
82 161 4.710695 CGGCACCGCACGTACTCA 62.711 66.667 0.00 0.00 0.00 3.41
89 168 2.514013 CGCACGTACTCATTCCCGC 61.514 63.158 0.00 0.00 0.00 6.13
100 179 3.009192 ATTCCCGCGCTGTAACCGA 62.009 57.895 5.56 0.00 0.00 4.69
103 182 2.735478 CCGCGCTGTAACCGAACA 60.735 61.111 5.56 0.00 0.00 3.18
110 189 4.764987 GTAACCGAACACGCGCGC 62.765 66.667 32.58 23.91 0.00 6.86
150 250 3.197790 CGCTCCAGCATTGGTCCG 61.198 66.667 0.00 0.00 45.26 4.79
180 280 3.490761 CGAAACAAAATCACCTGGCTTGT 60.491 43.478 0.00 0.00 0.00 3.16
183 283 3.030291 ACAAAATCACCTGGCTTGTGAA 58.970 40.909 12.41 0.00 45.15 3.18
265 368 2.646798 AGAGGAAAGAAACTGATGGGCT 59.353 45.455 0.00 0.00 0.00 5.19
266 369 3.013219 GAGGAAAGAAACTGATGGGCTC 58.987 50.000 0.00 0.00 0.00 4.70
268 371 3.157087 GGAAAGAAACTGATGGGCTCAA 58.843 45.455 0.00 0.00 32.14 3.02
269 372 3.057245 GGAAAGAAACTGATGGGCTCAAC 60.057 47.826 0.00 0.00 32.14 3.18
271 374 2.787994 AGAAACTGATGGGCTCAACAG 58.212 47.619 21.31 21.31 45.62 3.16
272 375 2.373169 AGAAACTGATGGGCTCAACAGA 59.627 45.455 28.64 0.00 43.73 3.41
273 376 2.957402 AACTGATGGGCTCAACAGAA 57.043 45.000 28.64 0.00 43.73 3.02
299 402 2.677875 GCAGCAAGGAGGGTTGGG 60.678 66.667 0.00 0.00 0.00 4.12
420 524 4.803426 GGCCTCGCCGAGTCACAG 62.803 72.222 13.83 0.00 39.62 3.66
422 526 4.803426 CCTCGCCGAGTCACAGCC 62.803 72.222 13.83 0.00 0.00 4.85
1292 1454 3.589654 CTTTCCTCGCCTGCCGTGA 62.590 63.158 0.00 0.00 38.35 4.35
1293 1455 3.171828 TTTCCTCGCCTGCCGTGAA 62.172 57.895 0.00 0.00 38.35 3.18
1294 1456 2.668185 TTTCCTCGCCTGCCGTGAAA 62.668 55.000 0.00 0.00 36.87 2.69
1321 1488 3.629855 TCATCTCATCTCGTCCTCTTGTC 59.370 47.826 0.00 0.00 0.00 3.18
1327 1494 0.388649 CTCGTCCTCTTGTCGGTTGG 60.389 60.000 0.00 0.00 0.00 3.77
1332 1499 3.146847 GTCCTCTTGTCGGTTGGATTTT 58.853 45.455 0.00 0.00 0.00 1.82
1333 1500 3.188667 GTCCTCTTGTCGGTTGGATTTTC 59.811 47.826 0.00 0.00 0.00 2.29
1334 1501 2.488153 CCTCTTGTCGGTTGGATTTTCC 59.512 50.000 0.00 0.00 36.96 3.13
1638 1846 7.855784 TGTATGATACACATCTGGTAGGATT 57.144 36.000 0.23 0.00 40.07 3.01
1643 1852 7.735917 TGATACACATCTGGTAGGATTAAAGG 58.264 38.462 0.00 0.00 31.93 3.11
1645 1854 6.388619 ACACATCTGGTAGGATTAAAGGTT 57.611 37.500 0.00 0.00 0.00 3.50
1674 1883 3.621558 TGTGGGTGTTGTGTGTTGATTA 58.378 40.909 0.00 0.00 0.00 1.75
1678 1903 4.707448 TGGGTGTTGTGTGTTGATTAGTTT 59.293 37.500 0.00 0.00 0.00 2.66
1680 1905 5.393678 GGGTGTTGTGTGTTGATTAGTTTGT 60.394 40.000 0.00 0.00 0.00 2.83
1681 1906 6.096695 GGTGTTGTGTGTTGATTAGTTTGTT 58.903 36.000 0.00 0.00 0.00 2.83
1682 1907 6.034470 GGTGTTGTGTGTTGATTAGTTTGTTG 59.966 38.462 0.00 0.00 0.00 3.33
1683 1908 6.584563 GTGTTGTGTGTTGATTAGTTTGTTGT 59.415 34.615 0.00 0.00 0.00 3.32
1705 1930 3.451141 TGTTTTGTTTTGCTAGGCTGG 57.549 42.857 0.00 0.00 0.00 4.85
1730 1957 5.991568 CTGTCGACACAGTAGTATCCTATG 58.008 45.833 15.76 0.00 44.63 2.23
1749 1995 7.302948 TCCTATGTATATGTCACAGTAGGGTT 58.697 38.462 0.00 0.00 33.09 4.11
1761 2008 6.313905 GTCACAGTAGGGTTATGAACATTGAG 59.686 42.308 0.00 0.00 0.00 3.02
1870 2117 2.914838 GCGGGAAAGCATCGTTAAAAAG 59.085 45.455 0.00 0.00 37.05 2.27
1882 2654 8.699749 AGCATCGTTAAAAAGCTTTAATTTGAC 58.300 29.630 13.10 9.23 38.82 3.18
1959 2731 6.347888 CGGTCAAGTTTGTACGGATTAAATGT 60.348 38.462 0.00 0.00 0.00 2.71
1960 2732 6.799925 GGTCAAGTTTGTACGGATTAAATGTG 59.200 38.462 0.00 0.00 0.00 3.21
1984 2756 4.331968 TCCATTTATTCGTGGGGATATGC 58.668 43.478 0.00 0.00 36.15 3.14
1985 2757 4.042809 TCCATTTATTCGTGGGGATATGCT 59.957 41.667 0.00 0.00 36.15 3.79
1993 2765 3.257375 TCGTGGGGATATGCTACATGTAC 59.743 47.826 0.08 0.16 0.00 2.90
1996 2768 5.105513 CGTGGGGATATGCTACATGTACATA 60.106 44.000 20.57 20.57 0.00 2.29
2128 2900 3.075283 AGGGGGTGTTGTATGTTGATTCA 59.925 43.478 0.00 0.00 0.00 2.57
2129 2901 4.023291 GGGGGTGTTGTATGTTGATTCAT 58.977 43.478 0.00 0.00 0.00 2.57
2130 2902 4.142182 GGGGGTGTTGTATGTTGATTCATG 60.142 45.833 0.00 0.00 0.00 3.07
2131 2903 4.704540 GGGGTGTTGTATGTTGATTCATGA 59.295 41.667 0.00 0.00 0.00 3.07
2132 2904 5.184864 GGGGTGTTGTATGTTGATTCATGAA 59.815 40.000 11.26 11.26 0.00 2.57
2133 2905 6.092748 GGGTGTTGTATGTTGATTCATGAAC 58.907 40.000 11.07 5.73 0.00 3.18
2134 2906 6.071952 GGGTGTTGTATGTTGATTCATGAACT 60.072 38.462 11.07 0.00 0.00 3.01
2135 2907 6.803320 GGTGTTGTATGTTGATTCATGAACTG 59.197 38.462 11.07 0.00 0.00 3.16
2136 2908 7.362662 GTGTTGTATGTTGATTCATGAACTGT 58.637 34.615 11.07 0.00 0.00 3.55
2137 2909 7.862372 GTGTTGTATGTTGATTCATGAACTGTT 59.138 33.333 11.07 0.00 0.00 3.16
2138 2910 8.412456 TGTTGTATGTTGATTCATGAACTGTTT 58.588 29.630 11.07 0.00 0.00 2.83
2139 2911 9.248291 GTTGTATGTTGATTCATGAACTGTTTT 57.752 29.630 11.07 0.00 0.00 2.43
2140 2912 8.800231 TGTATGTTGATTCATGAACTGTTTTG 57.200 30.769 11.07 0.00 0.00 2.44
2141 2913 8.412456 TGTATGTTGATTCATGAACTGTTTTGT 58.588 29.630 11.07 0.00 0.00 2.83
2142 2914 9.248291 GTATGTTGATTCATGAACTGTTTTGTT 57.752 29.630 11.07 0.00 0.00 2.83
2143 2915 8.721019 ATGTTGATTCATGAACTGTTTTGTTT 57.279 26.923 11.07 0.00 0.00 2.83
2144 2916 8.545229 TGTTGATTCATGAACTGTTTTGTTTT 57.455 26.923 11.07 0.00 0.00 2.43
2145 2917 8.441608 TGTTGATTCATGAACTGTTTTGTTTTG 58.558 29.630 11.07 0.00 0.00 2.44
2146 2918 8.655092 GTTGATTCATGAACTGTTTTGTTTTGA 58.345 29.630 11.07 0.00 0.00 2.69
2147 2919 8.945481 TGATTCATGAACTGTTTTGTTTTGAT 57.055 26.923 11.07 0.00 0.00 2.57
2148 2920 8.819015 TGATTCATGAACTGTTTTGTTTTGATG 58.181 29.630 11.07 0.00 0.00 3.07
2149 2921 8.721019 ATTCATGAACTGTTTTGTTTTGATGT 57.279 26.923 11.07 0.00 0.00 3.06
2150 2922 7.754069 TCATGAACTGTTTTGTTTTGATGTC 57.246 32.000 0.00 0.00 0.00 3.06
2151 2923 7.546358 TCATGAACTGTTTTGTTTTGATGTCT 58.454 30.769 0.00 0.00 0.00 3.41
2152 2924 7.488792 TCATGAACTGTTTTGTTTTGATGTCTG 59.511 33.333 0.00 0.00 0.00 3.51
2153 2925 6.918626 TGAACTGTTTTGTTTTGATGTCTGA 58.081 32.000 0.00 0.00 0.00 3.27
2154 2926 6.806249 TGAACTGTTTTGTTTTGATGTCTGAC 59.194 34.615 0.00 0.00 0.00 3.51
2155 2927 5.650543 ACTGTTTTGTTTTGATGTCTGACC 58.349 37.500 5.17 0.00 0.00 4.02
2156 2928 4.667262 TGTTTTGTTTTGATGTCTGACCG 58.333 39.130 5.17 0.00 0.00 4.79
2218 3021 6.754675 ACTGAAATTTTTAGTTTGTTGGGACG 59.245 34.615 1.00 0.00 0.00 4.79
2442 3626 0.098200 CAGCCACTGCATTGACATCG 59.902 55.000 5.49 0.00 41.13 3.84
2553 3974 4.877282 TGCAGGTTAGCAATTTTTGTACC 58.123 39.130 0.00 0.00 42.46 3.34
2638 4059 6.095440 TCAAGGTTCTTTCAAAAGAGGACAAG 59.905 38.462 5.42 0.00 45.01 3.16
2919 6001 6.870965 GCTGTGATAGTATAATGACCCTTCTG 59.129 42.308 0.00 0.00 0.00 3.02
2958 6040 0.034670 AGAAGCTTGTCATCTGCCCC 60.035 55.000 2.10 0.00 0.00 5.80
3169 6261 1.376424 CCATGTCTTGCTGGTCGCT 60.376 57.895 0.00 0.00 40.11 4.93
3499 6610 1.276421 CTGACCTCCCAAGATGTCGTT 59.724 52.381 0.00 0.00 39.69 3.85
3543 6654 1.654954 GCGGAGTTCCTGCTCGACTA 61.655 60.000 7.45 0.00 36.41 2.59
3724 6838 8.007405 TCTCTATGTTCAGTTATTTCGGATGA 57.993 34.615 0.00 0.00 0.00 2.92
3742 6856 5.335426 CGGATGATGAAATATGCTTTCCCTG 60.335 44.000 0.00 0.00 0.00 4.45
3813 6927 9.313118 CTGCTGGGTATTTTATTTATTTGTTCC 57.687 33.333 0.00 0.00 0.00 3.62
3888 7011 4.431416 TGCCTTTGTAACCTCTTGAAGA 57.569 40.909 0.00 0.00 0.00 2.87
3939 7107 8.807667 AGAAAAGTTTTTGCAGAGAATGTATG 57.192 30.769 1.64 0.00 0.00 2.39
4002 7179 8.943594 ATGAACCCATAACTAAAAAGTTACCA 57.056 30.769 0.34 0.00 37.13 3.25
4088 7265 9.659830 GACAACTACAAGTTACAAAGTTTATGG 57.340 33.333 0.00 0.00 36.03 2.74
4089 7266 8.626526 ACAACTACAAGTTACAAAGTTTATGGG 58.373 33.333 0.00 0.00 36.03 4.00
4090 7267 8.842280 CAACTACAAGTTACAAAGTTTATGGGA 58.158 33.333 0.00 0.00 36.03 4.37
4091 7268 8.983702 ACTACAAGTTACAAAGTTTATGGGAA 57.016 30.769 0.00 0.00 0.00 3.97
4092 7269 8.843262 ACTACAAGTTACAAAGTTTATGGGAAC 58.157 33.333 0.00 0.00 0.00 3.62
4109 7286 4.137849 GGAACCTTTTAGAACGTTTCGG 57.862 45.455 0.46 0.00 34.02 4.30
4110 7287 3.561310 GGAACCTTTTAGAACGTTTCGGT 59.439 43.478 0.46 0.41 34.02 4.69
4111 7288 4.319046 GGAACCTTTTAGAACGTTTCGGTC 60.319 45.833 0.46 0.00 44.66 4.79
4112 7289 3.133691 ACCTTTTAGAACGTTTCGGTCC 58.866 45.455 0.46 0.00 45.54 4.46
4113 7290 3.132925 CCTTTTAGAACGTTTCGGTCCA 58.867 45.455 0.46 0.00 45.54 4.02
4114 7291 3.749609 CCTTTTAGAACGTTTCGGTCCAT 59.250 43.478 0.46 0.00 45.54 3.41
4115 7292 4.214758 CCTTTTAGAACGTTTCGGTCCATT 59.785 41.667 0.46 0.00 45.54 3.16
4116 7293 5.278120 CCTTTTAGAACGTTTCGGTCCATTT 60.278 40.000 0.46 0.00 45.54 2.32
4117 7294 5.754543 TTTAGAACGTTTCGGTCCATTTT 57.245 34.783 0.46 0.00 45.54 1.82
4118 7295 5.754543 TTAGAACGTTTCGGTCCATTTTT 57.245 34.783 0.46 0.00 45.54 1.94
4149 7326 9.712305 TTCTTTATTTTGTTGTTGTTTTCCTCA 57.288 25.926 0.00 0.00 0.00 3.86
4150 7327 9.145865 TCTTTATTTTGTTGTTGTTTTCCTCAC 57.854 29.630 0.00 0.00 0.00 3.51
4151 7328 7.513190 TTATTTTGTTGTTGTTTTCCTCACG 57.487 32.000 0.00 0.00 0.00 4.35
4152 7329 3.495670 TTGTTGTTGTTTTCCTCACGG 57.504 42.857 0.00 0.00 0.00 4.94
4153 7330 2.712709 TGTTGTTGTTTTCCTCACGGA 58.287 42.857 0.00 0.00 37.60 4.69
4154 7331 3.283751 TGTTGTTGTTTTCCTCACGGAT 58.716 40.909 0.00 0.00 39.58 4.18
4155 7332 3.697045 TGTTGTTGTTTTCCTCACGGATT 59.303 39.130 0.00 0.00 39.58 3.01
4156 7333 4.158764 TGTTGTTGTTTTCCTCACGGATTT 59.841 37.500 0.00 0.00 39.58 2.17
4157 7334 5.357314 TGTTGTTGTTTTCCTCACGGATTTA 59.643 36.000 0.00 0.00 39.58 1.40
4158 7335 6.039941 TGTTGTTGTTTTCCTCACGGATTTAT 59.960 34.615 0.00 0.00 39.58 1.40
4159 7336 6.642707 TGTTGTTTTCCTCACGGATTTATT 57.357 33.333 0.00 0.00 39.58 1.40
4160 7337 7.045126 TGTTGTTTTCCTCACGGATTTATTT 57.955 32.000 0.00 0.00 39.58 1.40
4161 7338 6.920758 TGTTGTTTTCCTCACGGATTTATTTG 59.079 34.615 0.00 0.00 39.58 2.32
4162 7339 6.642707 TGTTTTCCTCACGGATTTATTTGT 57.357 33.333 0.00 0.00 39.58 2.83
4163 7340 7.045126 TGTTTTCCTCACGGATTTATTTGTT 57.955 32.000 0.00 0.00 39.58 2.83
4164 7341 7.493367 TGTTTTCCTCACGGATTTATTTGTTT 58.507 30.769 0.00 0.00 39.58 2.83
4165 7342 7.982354 TGTTTTCCTCACGGATTTATTTGTTTT 59.018 29.630 0.00 0.00 39.58 2.43
4166 7343 8.822855 GTTTTCCTCACGGATTTATTTGTTTTT 58.177 29.630 0.00 0.00 39.58 1.94
4189 7366 9.952188 TTTTTCTTTTGATTTTCAACGGTTTTT 57.048 22.222 0.00 0.00 35.89 1.94
4210 7387 7.876936 TTTTTGGGGTTTTAATGGGTTTTAC 57.123 32.000 0.00 0.00 0.00 2.01
4211 7388 5.563876 TTGGGGTTTTAATGGGTTTTACC 57.436 39.130 0.00 0.00 37.60 2.85
4212 7389 4.828963 TGGGGTTTTAATGGGTTTTACCT 58.171 39.130 0.00 0.00 38.64 3.08
4213 7390 5.225227 TGGGGTTTTAATGGGTTTTACCTT 58.775 37.500 0.00 0.00 38.64 3.50
4214 7391 5.670818 TGGGGTTTTAATGGGTTTTACCTTT 59.329 36.000 0.00 0.00 38.64 3.11
4215 7392 6.183361 TGGGGTTTTAATGGGTTTTACCTTTC 60.183 38.462 0.00 0.00 38.64 2.62
4216 7393 6.043474 GGGGTTTTAATGGGTTTTACCTTTCT 59.957 38.462 0.00 0.00 38.64 2.52
4217 7394 7.420446 GGGGTTTTAATGGGTTTTACCTTTCTT 60.420 37.037 0.00 0.00 38.64 2.52
4218 7395 7.994334 GGGTTTTAATGGGTTTTACCTTTCTTT 59.006 33.333 0.00 0.00 38.64 2.52
4219 7396 9.048446 GGTTTTAATGGGTTTTACCTTTCTTTC 57.952 33.333 0.00 0.00 38.64 2.62
4220 7397 9.826574 GTTTTAATGGGTTTTACCTTTCTTTCT 57.173 29.630 0.00 0.00 38.64 2.52
4222 7399 5.959618 ATGGGTTTTACCTTTCTTTCTCG 57.040 39.130 0.00 0.00 38.64 4.04
4223 7400 4.139038 TGGGTTTTACCTTTCTTTCTCGG 58.861 43.478 0.00 0.00 38.64 4.63
4224 7401 4.139786 GGGTTTTACCTTTCTTTCTCGGT 58.860 43.478 0.00 0.00 38.64 4.69
4225 7402 4.581824 GGGTTTTACCTTTCTTTCTCGGTT 59.418 41.667 0.00 0.00 38.64 4.44
4226 7403 5.068198 GGGTTTTACCTTTCTTTCTCGGTTT 59.932 40.000 0.00 0.00 38.64 3.27
4227 7404 6.406177 GGGTTTTACCTTTCTTTCTCGGTTTT 60.406 38.462 0.00 0.00 38.64 2.43
4228 7405 7.037438 GGTTTTACCTTTCTTTCTCGGTTTTT 58.963 34.615 0.00 0.00 34.73 1.94
4229 7406 8.190122 GGTTTTACCTTTCTTTCTCGGTTTTTA 58.810 33.333 0.00 0.00 34.73 1.52
4230 7407 9.740239 GTTTTACCTTTCTTTCTCGGTTTTTAT 57.260 29.630 0.00 0.00 0.00 1.40
4232 7409 9.738832 TTTACCTTTCTTTCTCGGTTTTTATTG 57.261 29.630 0.00 0.00 0.00 1.90
4233 7410 6.745116 ACCTTTCTTTCTCGGTTTTTATTGG 58.255 36.000 0.00 0.00 0.00 3.16
4234 7411 6.156519 CCTTTCTTTCTCGGTTTTTATTGGG 58.843 40.000 0.00 0.00 0.00 4.12
4235 7412 6.239204 CCTTTCTTTCTCGGTTTTTATTGGGT 60.239 38.462 0.00 0.00 0.00 4.51
4236 7413 6.718522 TTCTTTCTCGGTTTTTATTGGGTT 57.281 33.333 0.00 0.00 0.00 4.11
4237 7414 6.321848 TCTTTCTCGGTTTTTATTGGGTTC 57.678 37.500 0.00 0.00 0.00 3.62
4238 7415 6.066032 TCTTTCTCGGTTTTTATTGGGTTCT 58.934 36.000 0.00 0.00 0.00 3.01
4239 7416 6.548251 TCTTTCTCGGTTTTTATTGGGTTCTT 59.452 34.615 0.00 0.00 0.00 2.52
4240 7417 6.718522 TTCTCGGTTTTTATTGGGTTCTTT 57.281 33.333 0.00 0.00 0.00 2.52
4241 7418 6.321848 TCTCGGTTTTTATTGGGTTCTTTC 57.678 37.500 0.00 0.00 0.00 2.62
4242 7419 6.066032 TCTCGGTTTTTATTGGGTTCTTTCT 58.934 36.000 0.00 0.00 0.00 2.52
4243 7420 6.548251 TCTCGGTTTTTATTGGGTTCTTTCTT 59.452 34.615 0.00 0.00 0.00 2.52
4244 7421 7.068962 TCTCGGTTTTTATTGGGTTCTTTCTTT 59.931 33.333 0.00 0.00 0.00 2.52
4245 7422 7.557724 TCGGTTTTTATTGGGTTCTTTCTTTT 58.442 30.769 0.00 0.00 0.00 2.27
4246 7423 8.041919 TCGGTTTTTATTGGGTTCTTTCTTTTT 58.958 29.630 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 86 2.227388 GTGAGATTGAAAGCTGGTGTGG 59.773 50.000 0.00 0.00 0.00 4.17
15 94 7.851822 TTTTGAATTACGTGAGATTGAAAGC 57.148 32.000 0.00 0.00 0.00 3.51
37 116 5.286438 GCGAAGGGTTAACACATTCTTTTT 58.714 37.500 11.16 0.00 0.00 1.94
42 121 1.465187 GCGCGAAGGGTTAACACATTC 60.465 52.381 12.10 10.35 44.71 2.67
80 159 1.448893 GGTTACAGCGCGGGAATGA 60.449 57.895 8.85 0.00 0.00 2.57
82 161 2.510064 TTCGGTTACAGCGCGGGAAT 62.510 55.000 8.85 0.00 39.21 3.01
89 168 2.468532 GCGTGTTCGGTTACAGCG 59.531 61.111 0.00 0.00 40.97 5.18
114 193 3.728373 GGGACAATGCGGGAGGGT 61.728 66.667 0.00 0.00 0.00 4.34
123 202 3.197790 CTGGAGCGCGGGACAATG 61.198 66.667 8.83 0.00 0.00 2.82
150 250 4.938226 AGGTGATTTTGTTTCGATCCTCTC 59.062 41.667 0.00 0.00 0.00 3.20
159 259 3.803778 CACAAGCCAGGTGATTTTGTTTC 59.196 43.478 0.00 0.00 38.54 2.78
239 339 5.649831 CCCATCAGTTTCTTTCCTCTTAAGG 59.350 44.000 1.85 0.00 44.89 2.69
240 340 5.124617 GCCCATCAGTTTCTTTCCTCTTAAG 59.875 44.000 0.00 0.00 0.00 1.85
242 342 4.289672 AGCCCATCAGTTTCTTTCCTCTTA 59.710 41.667 0.00 0.00 0.00 2.10
265 368 1.614903 CTGCCTGCCAAATTCTGTTGA 59.385 47.619 0.00 0.00 0.00 3.18
266 369 1.938016 GCTGCCTGCCAAATTCTGTTG 60.938 52.381 0.00 0.00 35.15 3.33
268 371 0.828762 TGCTGCCTGCCAAATTCTGT 60.829 50.000 0.00 0.00 42.00 3.41
269 372 0.319083 TTGCTGCCTGCCAAATTCTG 59.681 50.000 0.00 0.00 42.00 3.02
271 374 0.390735 CCTTGCTGCCTGCCAAATTC 60.391 55.000 0.00 0.00 42.00 2.17
272 375 0.832983 TCCTTGCTGCCTGCCAAATT 60.833 50.000 0.00 0.00 42.00 1.82
273 376 1.228956 TCCTTGCTGCCTGCCAAAT 60.229 52.632 0.00 0.00 42.00 2.32
381 484 0.902048 TGGGCTCCTCTCACTCTGTG 60.902 60.000 0.00 0.00 34.45 3.66
1270 1407 3.717294 GCAGGCGAGGAAAGGGGA 61.717 66.667 0.00 0.00 0.00 4.81
1274 1412 3.121030 CACGGCAGGCGAGGAAAG 61.121 66.667 25.17 1.55 0.00 2.62
1278 1416 1.586154 ATTTTTCACGGCAGGCGAGG 61.586 55.000 25.17 14.55 0.00 4.63
1292 1454 7.108847 AGAGGACGAGATGAGATGAAATTTTT 58.891 34.615 0.00 0.00 0.00 1.94
1293 1455 6.648192 AGAGGACGAGATGAGATGAAATTTT 58.352 36.000 0.00 0.00 0.00 1.82
1294 1456 6.232581 AGAGGACGAGATGAGATGAAATTT 57.767 37.500 0.00 0.00 0.00 1.82
1455 1622 3.866910 CCATGCGATTCAAAATTTGAGGG 59.133 43.478 8.51 3.91 41.38 4.30
1456 1623 4.746729 TCCATGCGATTCAAAATTTGAGG 58.253 39.130 8.51 5.23 41.38 3.86
1459 1626 7.299586 ACAAAATCCATGCGATTCAAAATTTG 58.700 30.769 0.00 0.00 40.47 2.32
1537 1712 4.806571 GCAGATGGCAATGCAGTG 57.193 55.556 19.56 10.38 43.97 3.66
1565 1740 9.066892 TGAACTATTTGCACCTTATGGATTATC 57.933 33.333 0.81 0.00 37.04 1.75
1622 1830 6.388619 AACCTTTAATCCTACCAGATGTGT 57.611 37.500 0.00 0.00 0.00 3.72
1637 1845 6.603224 ACACCCACATAGTGTAAACCTTTAA 58.397 36.000 0.00 0.00 46.37 1.52
1638 1846 6.190346 ACACCCACATAGTGTAAACCTTTA 57.810 37.500 0.00 0.00 46.37 1.85
1674 1883 6.790282 AGCAAAACAAAACAAACAACAAACT 58.210 28.000 0.00 0.00 0.00 2.66
1678 1903 5.106908 GCCTAGCAAAACAAAACAAACAACA 60.107 36.000 0.00 0.00 0.00 3.33
1680 1905 5.121454 CAGCCTAGCAAAACAAAACAAACAA 59.879 36.000 0.00 0.00 0.00 2.83
1681 1906 4.629200 CAGCCTAGCAAAACAAAACAAACA 59.371 37.500 0.00 0.00 0.00 2.83
1682 1907 4.033932 CCAGCCTAGCAAAACAAAACAAAC 59.966 41.667 0.00 0.00 0.00 2.93
1683 1908 4.187694 CCAGCCTAGCAAAACAAAACAAA 58.812 39.130 0.00 0.00 0.00 2.83
1728 1955 8.721133 TCATAACCCTACTGTGACATATACAT 57.279 34.615 0.00 0.00 0.00 2.29
1729 1956 8.418662 GTTCATAACCCTACTGTGACATATACA 58.581 37.037 0.00 0.00 0.00 2.29
1730 1957 8.418662 TGTTCATAACCCTACTGTGACATATAC 58.581 37.037 0.00 0.00 0.00 1.47
1744 1977 5.716228 TGCATTTCTCAATGTTCATAACCCT 59.284 36.000 0.00 0.00 41.84 4.34
1749 1995 6.403964 GCTCACTGCATTTCTCAATGTTCATA 60.404 38.462 0.00 0.00 41.84 2.15
1830 2077 2.009774 GCGTATTTCCAGCAGTGATGT 58.990 47.619 7.74 0.00 0.00 3.06
1870 2117 8.520351 ACTGTGGTATTAAGGTCAAATTAAAGC 58.480 33.333 0.00 0.00 0.00 3.51
1890 2662 8.356000 TCCCTATTACCAAAATAAAACTGTGG 57.644 34.615 0.00 0.00 35.39 4.17
1960 2732 5.335661 GCATATCCCCACGAATAAATGGAAC 60.336 44.000 0.00 0.00 38.34 3.62
1985 2757 9.710900 GGAGATCATCAACATTATGTACATGTA 57.289 33.333 18.81 0.08 33.54 2.29
1993 2765 5.768662 AGCAAGGGAGATCATCAACATTATG 59.231 40.000 0.00 0.00 0.00 1.90
1996 2768 4.246712 AGCAAGGGAGATCATCAACATT 57.753 40.909 0.00 0.00 0.00 2.71
2010 2782 1.259609 TGGCTCAATGAAAGCAAGGG 58.740 50.000 0.00 0.00 41.66 3.95
2065 2837 4.024893 GCATCCTACACGTATTTGGTCATG 60.025 45.833 0.00 0.00 0.00 3.07
2071 2843 4.811024 AGATGTGCATCCTACACGTATTTG 59.189 41.667 8.41 0.00 41.03 2.32
2072 2844 4.811024 CAGATGTGCATCCTACACGTATTT 59.189 41.667 8.41 0.00 41.03 1.40
2128 2900 7.489113 GTCAGACATCAAAACAAAACAGTTCAT 59.511 33.333 0.00 0.00 0.00 2.57
2129 2901 6.806249 GTCAGACATCAAAACAAAACAGTTCA 59.194 34.615 0.00 0.00 0.00 3.18
2130 2902 6.253512 GGTCAGACATCAAAACAAAACAGTTC 59.746 38.462 2.17 0.00 0.00 3.01
2131 2903 6.099341 GGTCAGACATCAAAACAAAACAGTT 58.901 36.000 2.17 0.00 0.00 3.16
2132 2904 5.650543 GGTCAGACATCAAAACAAAACAGT 58.349 37.500 2.17 0.00 0.00 3.55
2133 2905 4.734854 CGGTCAGACATCAAAACAAAACAG 59.265 41.667 2.17 0.00 0.00 3.16
2134 2906 4.439426 CCGGTCAGACATCAAAACAAAACA 60.439 41.667 2.17 0.00 0.00 2.83
2135 2907 4.041723 CCGGTCAGACATCAAAACAAAAC 58.958 43.478 2.17 0.00 0.00 2.43
2136 2908 3.697045 ACCGGTCAGACATCAAAACAAAA 59.303 39.130 0.00 0.00 0.00 2.44
2137 2909 3.066064 CACCGGTCAGACATCAAAACAAA 59.934 43.478 2.59 0.00 0.00 2.83
2138 2910 2.616376 CACCGGTCAGACATCAAAACAA 59.384 45.455 2.59 0.00 0.00 2.83
2139 2911 2.158885 TCACCGGTCAGACATCAAAACA 60.159 45.455 2.59 0.00 0.00 2.83
2140 2912 2.489971 TCACCGGTCAGACATCAAAAC 58.510 47.619 2.59 0.00 0.00 2.43
2141 2913 2.920724 TCACCGGTCAGACATCAAAA 57.079 45.000 2.59 0.00 0.00 2.44
2142 2914 2.920724 TTCACCGGTCAGACATCAAA 57.079 45.000 2.59 0.00 0.00 2.69
2143 2915 2.354704 GGATTCACCGGTCAGACATCAA 60.355 50.000 2.59 0.00 0.00 2.57
2144 2916 1.207089 GGATTCACCGGTCAGACATCA 59.793 52.381 2.59 0.00 0.00 3.07
2145 2917 1.207089 TGGATTCACCGGTCAGACATC 59.793 52.381 2.59 6.37 42.61 3.06
2146 2918 1.275666 TGGATTCACCGGTCAGACAT 58.724 50.000 2.59 0.00 42.61 3.06
2147 2919 1.052617 TTGGATTCACCGGTCAGACA 58.947 50.000 2.59 0.00 42.61 3.41
2148 2920 2.403252 ATTGGATTCACCGGTCAGAC 57.597 50.000 2.59 0.00 42.61 3.51
2149 2921 2.039746 ACAATTGGATTCACCGGTCAGA 59.960 45.455 2.59 0.00 42.61 3.27
2150 2922 2.436417 ACAATTGGATTCACCGGTCAG 58.564 47.619 2.59 0.00 42.61 3.51
2151 2923 2.577606 ACAATTGGATTCACCGGTCA 57.422 45.000 2.59 0.00 42.61 4.02
2152 2924 3.564225 GGATACAATTGGATTCACCGGTC 59.436 47.826 2.59 0.00 42.61 4.79
2153 2925 3.202151 AGGATACAATTGGATTCACCGGT 59.798 43.478 11.73 0.00 40.02 5.28
2154 2926 3.565482 CAGGATACAATTGGATTCACCGG 59.435 47.826 11.73 0.00 40.02 5.28
2155 2927 3.003689 GCAGGATACAATTGGATTCACCG 59.996 47.826 11.73 0.63 40.02 4.94
2156 2928 3.953612 TGCAGGATACAATTGGATTCACC 59.046 43.478 11.73 5.30 41.41 4.02
2218 3021 3.003275 TGCAGTTGTTAAGTAGCTGTTGC 59.997 43.478 0.00 0.00 40.05 4.17
2442 3626 3.896648 TTGCTGAACTCCATTTTCGAC 57.103 42.857 0.00 0.00 0.00 4.20
2638 4059 4.320608 TCTGCAAAGTTCAATGGTTTCC 57.679 40.909 0.00 0.00 0.00 3.13
2829 4367 7.436673 GCGTATTCAGTTAAGAATGTGAGATCT 59.563 37.037 0.00 0.00 38.60 2.75
2919 6001 1.153349 GGAAGGATCCGCTGGTGAC 60.153 63.158 5.98 0.00 35.59 3.67
2958 6040 1.932160 CGATGTTTCCACGTTTGTCG 58.068 50.000 0.00 0.00 46.00 4.35
3169 6261 1.269569 CCACGAGCTATATCACGGCAA 60.270 52.381 0.00 0.00 0.00 4.52
3499 6610 9.571810 GCAACAACAATGAATATGAATAAGACA 57.428 29.630 0.00 0.00 0.00 3.41
3543 6654 2.821437 TGAATCCCCGAGAAAGACTCT 58.179 47.619 0.00 0.00 42.92 3.24
3724 6838 5.025453 ACCAACAGGGAAAGCATATTTCAT 58.975 37.500 3.07 0.00 41.15 2.57
3742 6856 2.959507 AAGAAAACCACAGCACCAAC 57.040 45.000 0.00 0.00 0.00 3.77
3785 6899 7.846066 ACAAATAAATAAAATACCCAGCAGCA 58.154 30.769 0.00 0.00 0.00 4.41
3813 6927 3.287222 TGAAAGTTGGGAGGTGTCAAAG 58.713 45.455 0.00 0.00 0.00 2.77
3822 6936 1.160137 CGGCTTCTGAAAGTTGGGAG 58.840 55.000 0.00 0.00 34.79 4.30
3853 6967 1.902938 AAGGCAAGGAAGTTCTGCTC 58.097 50.000 14.62 7.09 0.00 4.26
4033 7210 9.577110 ACTAAATTGATAGCATGACACATTTTG 57.423 29.630 0.00 0.00 0.00 2.44
4070 7247 7.284919 AGGTTCCCATAAACTTTGTAACTTG 57.715 36.000 0.00 0.00 0.00 3.16
4085 7262 4.214758 CGAAACGTTCTAAAAGGTTCCCAT 59.785 41.667 0.00 0.00 41.34 4.00
4086 7263 3.560896 CGAAACGTTCTAAAAGGTTCCCA 59.439 43.478 0.00 0.00 41.34 4.37
4087 7264 3.058708 CCGAAACGTTCTAAAAGGTTCCC 60.059 47.826 0.00 0.00 41.34 3.97
4088 7265 3.561310 ACCGAAACGTTCTAAAAGGTTCC 59.439 43.478 0.00 0.00 41.34 3.62
4089 7266 4.319046 GGACCGAAACGTTCTAAAAGGTTC 60.319 45.833 0.00 0.48 41.34 3.62
4090 7267 3.561310 GGACCGAAACGTTCTAAAAGGTT 59.439 43.478 0.00 0.00 43.38 3.50
4091 7268 3.133691 GGACCGAAACGTTCTAAAAGGT 58.866 45.455 0.00 5.17 35.08 3.50
4092 7269 3.132925 TGGACCGAAACGTTCTAAAAGG 58.867 45.455 0.00 1.80 0.00 3.11
4093 7270 5.352643 AATGGACCGAAACGTTCTAAAAG 57.647 39.130 0.00 0.00 0.00 2.27
4094 7271 5.754543 AAATGGACCGAAACGTTCTAAAA 57.245 34.783 0.00 0.00 0.00 1.52
4095 7272 5.754543 AAAATGGACCGAAACGTTCTAAA 57.245 34.783 0.00 0.00 0.00 1.85
4096 7273 5.754543 AAAAATGGACCGAAACGTTCTAA 57.245 34.783 0.00 0.00 0.00 2.10
4123 7300 9.712305 TGAGGAAAACAACAACAAAATAAAGAA 57.288 25.926 0.00 0.00 0.00 2.52
4124 7301 9.145865 GTGAGGAAAACAACAACAAAATAAAGA 57.854 29.630 0.00 0.00 0.00 2.52
4125 7302 8.107564 CGTGAGGAAAACAACAACAAAATAAAG 58.892 33.333 0.00 0.00 0.00 1.85
4126 7303 7.954447 CGTGAGGAAAACAACAACAAAATAAA 58.046 30.769 0.00 0.00 0.00 1.40
4127 7304 7.513190 CGTGAGGAAAACAACAACAAAATAA 57.487 32.000 0.00 0.00 0.00 1.40
4163 7340 9.952188 AAAAACCGTTGAAAATCAAAAGAAAAA 57.048 22.222 0.00 0.00 38.22 1.94
4186 7363 6.832384 GGTAAAACCCATTAAAACCCCAAAAA 59.168 34.615 0.00 0.00 30.04 1.94
4187 7364 6.159928 AGGTAAAACCCATTAAAACCCCAAAA 59.840 34.615 0.00 0.00 39.75 2.44
4188 7365 5.670818 AGGTAAAACCCATTAAAACCCCAAA 59.329 36.000 0.00 0.00 39.75 3.28
4189 7366 5.225227 AGGTAAAACCCATTAAAACCCCAA 58.775 37.500 0.00 0.00 39.75 4.12
4190 7367 4.828963 AGGTAAAACCCATTAAAACCCCA 58.171 39.130 0.00 0.00 39.75 4.96
4191 7368 5.829062 AAGGTAAAACCCATTAAAACCCC 57.171 39.130 0.00 0.00 39.75 4.95
4192 7369 7.069877 AGAAAGGTAAAACCCATTAAAACCC 57.930 36.000 0.00 0.00 39.75 4.11
4193 7370 8.967664 AAAGAAAGGTAAAACCCATTAAAACC 57.032 30.769 0.00 0.00 39.75 3.27
4194 7371 9.826574 AGAAAGAAAGGTAAAACCCATTAAAAC 57.173 29.630 0.00 0.00 39.75 2.43
4196 7373 8.354426 CGAGAAAGAAAGGTAAAACCCATTAAA 58.646 33.333 0.00 0.00 39.75 1.52
4197 7374 7.040271 CCGAGAAAGAAAGGTAAAACCCATTAA 60.040 37.037 0.00 0.00 39.75 1.40
4198 7375 6.431852 CCGAGAAAGAAAGGTAAAACCCATTA 59.568 38.462 0.00 0.00 39.75 1.90
4199 7376 5.243060 CCGAGAAAGAAAGGTAAAACCCATT 59.757 40.000 0.00 0.00 39.75 3.16
4200 7377 4.765339 CCGAGAAAGAAAGGTAAAACCCAT 59.235 41.667 0.00 0.00 39.75 4.00
4201 7378 4.139038 CCGAGAAAGAAAGGTAAAACCCA 58.861 43.478 0.00 0.00 39.75 4.51
4202 7379 4.139786 ACCGAGAAAGAAAGGTAAAACCC 58.860 43.478 0.00 0.00 39.75 4.11
4203 7380 5.762825 AACCGAGAAAGAAAGGTAAAACC 57.237 39.130 0.00 0.00 38.99 3.27
4204 7381 9.740239 ATAAAAACCGAGAAAGAAAGGTAAAAC 57.260 29.630 0.00 0.00 35.68 2.43
4206 7383 9.738832 CAATAAAAACCGAGAAAGAAAGGTAAA 57.261 29.630 0.00 0.00 35.68 2.01
4207 7384 8.354426 CCAATAAAAACCGAGAAAGAAAGGTAA 58.646 33.333 0.00 0.00 35.68 2.85
4208 7385 7.040271 CCCAATAAAAACCGAGAAAGAAAGGTA 60.040 37.037 0.00 0.00 35.68 3.08
4209 7386 6.239204 CCCAATAAAAACCGAGAAAGAAAGGT 60.239 38.462 0.00 0.00 38.88 3.50
4210 7387 6.156519 CCCAATAAAAACCGAGAAAGAAAGG 58.843 40.000 0.00 0.00 0.00 3.11
4211 7388 6.745116 ACCCAATAAAAACCGAGAAAGAAAG 58.255 36.000 0.00 0.00 0.00 2.62
4212 7389 6.718522 ACCCAATAAAAACCGAGAAAGAAA 57.281 33.333 0.00 0.00 0.00 2.52
4213 7390 6.548251 AGAACCCAATAAAAACCGAGAAAGAA 59.452 34.615 0.00 0.00 0.00 2.52
4214 7391 6.066032 AGAACCCAATAAAAACCGAGAAAGA 58.934 36.000 0.00 0.00 0.00 2.52
4215 7392 6.327279 AGAACCCAATAAAAACCGAGAAAG 57.673 37.500 0.00 0.00 0.00 2.62
4216 7393 6.718522 AAGAACCCAATAAAAACCGAGAAA 57.281 33.333 0.00 0.00 0.00 2.52
4217 7394 6.548251 AGAAAGAACCCAATAAAAACCGAGAA 59.452 34.615 0.00 0.00 0.00 2.87
4218 7395 6.066032 AGAAAGAACCCAATAAAAACCGAGA 58.934 36.000 0.00 0.00 0.00 4.04
4219 7396 6.327279 AGAAAGAACCCAATAAAAACCGAG 57.673 37.500 0.00 0.00 0.00 4.63
4220 7397 6.718522 AAGAAAGAACCCAATAAAAACCGA 57.281 33.333 0.00 0.00 0.00 4.69
4221 7398 7.780008 AAAAGAAAGAACCCAATAAAAACCG 57.220 32.000 0.00 0.00 0.00 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.