Multiple sequence alignment - TraesCS3B01G581500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G581500 chr3B 100.000 4587 0 0 1 4587 810249564 810254150 0.000000e+00 8471.0
1 TraesCS3B01G581500 chr3B 83.537 820 103 23 2217 3025 809627228 809628026 0.000000e+00 737.0
2 TraesCS3B01G581500 chr3B 75.916 1337 248 45 2275 3581 809833980 809835272 6.520000e-173 617.0
3 TraesCS3B01G581500 chr3B 83.540 565 54 22 1038 1573 809613818 809613264 4.120000e-135 492.0
4 TraesCS3B01G581500 chr3B 92.708 96 5 1 4145 4240 793589795 793589702 2.230000e-28 137.0
5 TraesCS3B01G581500 chr3B 77.439 164 28 8 1413 1573 28699131 28699288 6.320000e-14 89.8
6 TraesCS3B01G581500 chr3B 77.640 161 27 8 1416 1573 823809164 823809318 6.320000e-14 89.8
7 TraesCS3B01G581500 chr3A 91.656 1510 97 11 2041 3539 732420990 732422481 0.000000e+00 2063.0
8 TraesCS3B01G581500 chr3A 90.852 951 61 16 2860 3798 732428713 732429649 0.000000e+00 1251.0
9 TraesCS3B01G581500 chr3A 92.908 705 36 7 2041 2740 732428008 732428703 0.000000e+00 1013.0
10 TraesCS3B01G581500 chr3A 82.191 1123 151 29 2230 3322 732082143 732083246 0.000000e+00 920.0
11 TraesCS3B01G581500 chr3A 80.823 1215 170 39 2408 3599 731991683 731990509 0.000000e+00 894.0
12 TraesCS3B01G581500 chr3A 85.055 910 81 19 1163 2044 732427039 732427921 0.000000e+00 876.0
13 TraesCS3B01G581500 chr3A 85.959 641 57 14 957 1573 732069237 732068606 0.000000e+00 654.0
14 TraesCS3B01G581500 chr3A 86.364 484 40 11 1163 1638 732419005 732419470 5.300000e-139 505.0
15 TraesCS3B01G581500 chr3A 82.918 562 64 14 1038 1573 732299871 732300426 1.150000e-130 477.0
16 TraesCS3B01G581500 chr3A 93.293 328 15 4 3474 3800 732422489 732422810 1.150000e-130 477.0
17 TraesCS3B01G581500 chr3A 88.991 327 20 8 4237 4563 732423163 732423473 1.550000e-104 390.0
18 TraesCS3B01G581500 chr3A 84.235 425 28 14 1634 2044 732419644 732420043 1.200000e-100 377.0
19 TraesCS3B01G581500 chr3A 88.379 327 21 8 4237 4563 732429988 732430297 1.200000e-100 377.0
20 TraesCS3B01G581500 chr3A 74.924 981 154 32 1045 2005 732099163 732100071 9.380000e-97 364.0
21 TraesCS3B01G581500 chr3A 87.440 207 17 4 3845 4045 731986186 731986389 3.570000e-56 230.0
22 TraesCS3B01G581500 chr3A 77.913 412 62 14 1617 2014 731994936 731994540 3.570000e-56 230.0
23 TraesCS3B01G581500 chr3A 83.060 183 19 6 1786 1956 732081509 732081691 6.140000e-34 156.0
24 TraesCS3B01G581500 chr3A 91.176 102 5 3 4141 4241 231677668 231677570 8.000000e-28 135.0
25 TraesCS3B01G581500 chr3D 87.161 1659 133 38 2041 3687 602448985 602447395 0.000000e+00 1810.0
26 TraesCS3B01G581500 chr3D 92.093 1290 75 13 2041 3319 603634124 603632851 0.000000e+00 1792.0
27 TraesCS3B01G581500 chr3D 87.535 1075 89 29 2217 3282 568495324 568496362 0.000000e+00 1201.0
28 TraesCS3B01G581500 chr3D 82.051 1404 198 32 2220 3610 602751183 602749821 0.000000e+00 1147.0
29 TraesCS3B01G581500 chr3D 81.831 1409 205 33 2217 3610 603867650 603869022 0.000000e+00 1136.0
30 TraesCS3B01G581500 chr3D 85.101 839 80 25 1130 1947 603635051 603634237 0.000000e+00 815.0
31 TraesCS3B01G581500 chr3D 83.845 879 110 19 2217 3086 602428996 602429851 0.000000e+00 808.0
32 TraesCS3B01G581500 chr3D 91.075 493 30 7 3312 3800 603632143 603631661 0.000000e+00 654.0
33 TraesCS3B01G581500 chr3D 87.732 538 46 8 952 1473 602358416 602357883 1.090000e-170 610.0
34 TraesCS3B01G581500 chr3D 88.314 522 44 9 380 899 602450745 602450239 1.090000e-170 610.0
35 TraesCS3B01G581500 chr3D 87.977 524 44 10 380 899 602359019 602358511 6.570000e-168 601.0
36 TraesCS3B01G581500 chr3D 94.560 386 21 0 1 386 602452400 602452015 8.490000e-167 597.0
37 TraesCS3B01G581500 chr3D 94.301 386 22 0 1 386 602360470 602360085 3.950000e-165 592.0
38 TraesCS3B01G581500 chr3D 81.818 660 72 23 952 1581 602450144 602449503 1.140000e-140 510.0
39 TraesCS3B01G581500 chr3D 90.691 376 27 4 1669 2044 602449443 602449076 1.150000e-135 494.0
40 TraesCS3B01G581500 chr3D 83.274 562 59 20 1038 1573 602458055 602457503 6.900000e-133 484.0
41 TraesCS3B01G581500 chr3D 86.503 326 19 8 4238 4563 603631275 603630975 7.350000e-88 335.0
42 TraesCS3B01G581500 chr3D 80.984 447 49 23 952 1364 602378934 602378490 5.720000e-84 322.0
43 TraesCS3B01G581500 chr3D 82.934 334 28 11 3825 4155 603631583 603631276 1.630000e-69 274.0
44 TraesCS3B01G581500 chr3D 83.505 291 29 12 1038 1310 602460543 602460254 2.120000e-63 254.0
45 TraesCS3B01G581500 chr3D 82.143 280 34 9 3347 3623 602345793 602345527 4.620000e-55 226.0
46 TraesCS3B01G581500 chr3D 80.205 293 37 13 3327 3614 568496491 568496767 2.800000e-47 200.0
47 TraesCS3B01G581500 chr3D 82.128 235 21 8 1792 2013 602429858 602430084 1.010000e-41 182.0
48 TraesCS3B01G581500 chr3D 90.566 106 10 0 304 409 602549308 602549203 1.720000e-29 141.0
49 TraesCS3B01G581500 chr3D 88.679 106 12 0 304 409 602383012 602382907 3.720000e-26 130.0
50 TraesCS3B01G581500 chrUn 81.863 1406 204 33 2220 3610 276043093 276041724 0.000000e+00 1136.0
51 TraesCS3B01G581500 chrUn 93.478 92 4 1 4153 4244 155926800 155926889 8.000000e-28 135.0
52 TraesCS3B01G581500 chr7B 79.127 527 65 21 952 1441 356984502 356983984 5.720000e-84 322.0
53 TraesCS3B01G581500 chr5A 80.220 364 43 12 1669 2014 31572096 31572448 3.540000e-61 246.0
54 TraesCS3B01G581500 chr1A 86.486 185 17 3 3592 3774 590642371 590642193 3.620000e-46 196.0
55 TraesCS3B01G581500 chr6D 93.478 92 4 1 4149 4240 439490700 439490789 8.000000e-28 135.0
56 TraesCS3B01G581500 chr5B 93.478 92 4 1 4153 4244 82705413 82705324 8.000000e-28 135.0
57 TraesCS3B01G581500 chr1B 91.000 100 7 1 4149 4248 200123117 200123214 2.880000e-27 134.0
58 TraesCS3B01G581500 chr1B 90.196 102 6 3 4139 4240 548628038 548627941 3.720000e-26 130.0
59 TraesCS3B01G581500 chr6A 89.216 102 8 3 4139 4240 535818383 535818481 1.730000e-24 124.0
60 TraesCS3B01G581500 chr7A 86.726 113 12 2 4130 4242 46167080 46166971 6.230000e-24 122.0
61 TraesCS3B01G581500 chr1D 83.333 114 19 0 1479 1592 9646361 9646248 6.280000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G581500 chr3B 810249564 810254150 4586 False 8471.000000 8471 100.000000 1 4587 1 chr3B.!!$F4 4586
1 TraesCS3B01G581500 chr3B 809627228 809628026 798 False 737.000000 737 83.537000 2217 3025 1 chr3B.!!$F2 808
2 TraesCS3B01G581500 chr3B 809833980 809835272 1292 False 617.000000 617 75.916000 2275 3581 1 chr3B.!!$F3 1306
3 TraesCS3B01G581500 chr3B 809613264 809613818 554 True 492.000000 492 83.540000 1038 1573 1 chr3B.!!$R2 535
4 TraesCS3B01G581500 chr3A 732419005 732430297 11292 False 814.333333 2063 89.081444 1163 4563 9 chr3A.!!$F5 3400
5 TraesCS3B01G581500 chr3A 732068606 732069237 631 True 654.000000 654 85.959000 957 1573 1 chr3A.!!$R2 616
6 TraesCS3B01G581500 chr3A 731990509 731994936 4427 True 562.000000 894 79.368000 1617 3599 2 chr3A.!!$R3 1982
7 TraesCS3B01G581500 chr3A 732081509 732083246 1737 False 538.000000 920 82.625500 1786 3322 2 chr3A.!!$F4 1536
8 TraesCS3B01G581500 chr3A 732299871 732300426 555 False 477.000000 477 82.918000 1038 1573 1 chr3A.!!$F3 535
9 TraesCS3B01G581500 chr3A 732099163 732100071 908 False 364.000000 364 74.924000 1045 2005 1 chr3A.!!$F2 960
10 TraesCS3B01G581500 chr3D 602749821 602751183 1362 True 1147.000000 1147 82.051000 2220 3610 1 chr3D.!!$R3 1390
11 TraesCS3B01G581500 chr3D 603867650 603869022 1372 False 1136.000000 1136 81.831000 2217 3610 1 chr3D.!!$F1 1393
12 TraesCS3B01G581500 chr3D 602447395 602452400 5005 True 804.200000 1810 88.508800 1 3687 5 chr3D.!!$R6 3686
13 TraesCS3B01G581500 chr3D 603630975 603635051 4076 True 774.000000 1792 87.541200 1130 4563 5 chr3D.!!$R8 3433
14 TraesCS3B01G581500 chr3D 568495324 568496767 1443 False 700.500000 1201 83.870000 2217 3614 2 chr3D.!!$F2 1397
15 TraesCS3B01G581500 chr3D 602357883 602360470 2587 True 601.000000 610 90.003333 1 1473 3 chr3D.!!$R4 1472
16 TraesCS3B01G581500 chr3D 602428996 602430084 1088 False 495.000000 808 82.986500 1792 3086 2 chr3D.!!$F3 1294
17 TraesCS3B01G581500 chr3D 602457503 602460543 3040 True 369.000000 484 83.389500 1038 1573 2 chr3D.!!$R7 535
18 TraesCS3B01G581500 chr3D 602378490 602383012 4522 True 226.000000 322 84.831500 304 1364 2 chr3D.!!$R5 1060
19 TraesCS3B01G581500 chrUn 276041724 276043093 1369 True 1136.000000 1136 81.863000 2220 3610 1 chrUn.!!$R1 1390
20 TraesCS3B01G581500 chr7B 356983984 356984502 518 True 322.000000 322 79.127000 952 1441 1 chr7B.!!$R1 489

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
831 2913 0.251832 AGGAGTTGGCGAGAGAAGGA 60.252 55.000 0.00 0.00 0.00 3.36 F
977 5785 1.076533 CCGTCACTTCGATTCCACCG 61.077 60.000 0.00 0.00 0.00 4.94 F
981 5789 1.375523 ACTTCGATTCCACCGGTGC 60.376 57.895 29.75 14.36 0.00 5.01 F
1782 9352 1.620822 CCTTGGGGGACAAAGACTTG 58.379 55.000 0.00 0.00 38.91 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1845 9415 0.246635 GCTGGTAGTCGCTCAAGGAA 59.753 55.000 0.0 0.0 0.00 3.36 R
2851 13098 2.125106 CTGCCCAGTAACCCGCTC 60.125 66.667 0.0 0.0 0.00 5.03 R
3079 13337 2.181021 CGGGTCGCTTTAGCTCGT 59.819 61.111 0.0 0.0 39.32 4.18 R
3846 21972 0.037590 AAGGGTATGAGTTTGCGGCA 59.962 50.000 0.0 0.0 0.00 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 2.651642 AGAGAAGAAGTAGGGCCCTT 57.348 50.000 34.04 13.29 0.00 3.95
128 129 1.267806 GTCCGTCGACTTCACCACTAA 59.732 52.381 14.70 0.00 35.99 2.24
144 145 5.943416 CACCACTAACTCCAATACCAAATCA 59.057 40.000 0.00 0.00 0.00 2.57
146 147 5.943416 CCACTAACTCCAATACCAAATCACA 59.057 40.000 0.00 0.00 0.00 3.58
173 174 5.899547 TCTATACAGTGGTTCACTCATCCAT 59.100 40.000 0.00 0.00 43.43 3.41
249 250 9.631257 ATTATCCAATGATCTATTGTGTTGTCA 57.369 29.630 13.37 0.00 43.78 3.58
256 257 8.687292 ATGATCTATTGTGTTGTCATTATGCT 57.313 30.769 0.00 0.00 0.00 3.79
258 259 6.588348 TCTATTGTGTTGTCATTATGCTCG 57.412 37.500 0.00 0.00 0.00 5.03
268 269 9.157104 TGTTGTCATTATGCTCGATAAGTTTTA 57.843 29.630 0.00 0.00 29.78 1.52
286 287 8.761575 AAGTTTTATTTTGTCATATGGCACTG 57.238 30.769 10.13 0.00 0.00 3.66
290 291 2.127271 TTGTCATATGGCACTGGTGG 57.873 50.000 10.13 0.00 0.00 4.61
448 1896 5.596845 TGTTTGATAAGGGTTTCAACTTGC 58.403 37.500 0.00 0.00 31.87 4.01
471 1919 0.327924 AGACGGTCCATGATTTGGCA 59.672 50.000 4.14 0.00 46.01 4.92
492 2142 4.082026 GCATGAAGTGAAGCTTATGGGTTT 60.082 41.667 0.00 0.00 37.59 3.27
497 2147 5.649782 AGTGAAGCTTATGGGTTTCATTG 57.350 39.130 0.00 0.00 38.34 2.82
498 2148 5.079643 AGTGAAGCTTATGGGTTTCATTGT 58.920 37.500 0.00 0.00 38.34 2.71
503 2153 4.218417 AGCTTATGGGTTTCATTGTCACAC 59.782 41.667 0.00 0.00 37.30 3.82
532 2182 6.163135 AGAGTTAGTCAACACTAAGCAGTT 57.837 37.500 0.00 0.00 44.29 3.16
545 2195 9.555727 AACACTAAGCAGTTAGTCTTTGATTTA 57.444 29.630 0.00 0.00 44.81 1.40
595 2246 0.912486 CAAAGTCTCCCCACCCCTAG 59.088 60.000 0.00 0.00 0.00 3.02
596 2247 0.496841 AAAGTCTCCCCACCCCTAGT 59.503 55.000 0.00 0.00 0.00 2.57
602 2253 1.082206 CCCCACCCCTAGTCTCCAA 59.918 63.158 0.00 0.00 0.00 3.53
604 2255 1.272554 CCCACCCCTAGTCTCCAACC 61.273 65.000 0.00 0.00 0.00 3.77
607 2258 0.492276 ACCCCTAGTCTCCAACCAGT 59.508 55.000 0.00 0.00 0.00 4.00
610 2261 2.290323 CCCCTAGTCTCCAACCAGTTTG 60.290 54.545 0.00 0.00 34.63 2.93
615 2266 2.104963 AGTCTCCAACCAGTTTGTCTCC 59.895 50.000 0.00 0.00 32.71 3.71
650 2301 4.353437 ACGTCCGAACCAGTCCGC 62.353 66.667 0.00 0.00 0.00 5.54
689 2340 5.868801 CCATGTTGGATGGTAAAATGTGTTC 59.131 40.000 0.00 0.00 40.96 3.18
703 2354 0.596082 GTGTTCATGGTTTGGGGTCG 59.404 55.000 0.00 0.00 0.00 4.79
704 2355 1.175983 TGTTCATGGTTTGGGGTCGC 61.176 55.000 0.00 0.00 0.00 5.19
719 2797 1.278238 GTCGCCTTGATGTAACTCCG 58.722 55.000 0.00 0.00 0.00 4.63
729 2807 1.934589 TGTAACTCCGGATTGCATCG 58.065 50.000 3.57 0.00 0.00 3.84
756 2834 6.894654 TGAGTCACTCCTTGATATTCTCTCTT 59.105 38.462 1.24 0.00 36.32 2.85
786 2868 6.396829 AAGATTGGAGTCAAAAAGAGTTGG 57.603 37.500 0.00 0.00 36.36 3.77
787 2869 4.279420 AGATTGGAGTCAAAAAGAGTTGGC 59.721 41.667 0.00 0.00 36.36 4.52
788 2870 3.011566 TGGAGTCAAAAAGAGTTGGCA 57.988 42.857 0.00 0.00 35.50 4.92
830 2912 0.610687 AAGGAGTTGGCGAGAGAAGG 59.389 55.000 0.00 0.00 0.00 3.46
831 2913 0.251832 AGGAGTTGGCGAGAGAAGGA 60.252 55.000 0.00 0.00 0.00 3.36
838 3901 3.526931 TGGCGAGAGAAGGATAAACAG 57.473 47.619 0.00 0.00 0.00 3.16
847 3910 8.012241 CGAGAGAAGGATAAACAGTTTCAAAAG 58.988 37.037 0.48 0.00 0.00 2.27
848 3911 8.171164 AGAGAAGGATAAACAGTTTCAAAAGG 57.829 34.615 0.48 0.00 0.00 3.11
849 3912 7.998964 AGAGAAGGATAAACAGTTTCAAAAGGA 59.001 33.333 0.48 0.00 0.00 3.36
850 3913 8.171164 AGAAGGATAAACAGTTTCAAAAGGAG 57.829 34.615 0.48 0.00 0.00 3.69
851 3914 7.780271 AGAAGGATAAACAGTTTCAAAAGGAGT 59.220 33.333 0.48 0.00 0.00 3.85
852 3915 7.898014 AGGATAAACAGTTTCAAAAGGAGTT 57.102 32.000 0.48 0.00 0.00 3.01
853 3916 7.941919 AGGATAAACAGTTTCAAAAGGAGTTC 58.058 34.615 0.48 0.00 0.00 3.01
854 3917 6.856426 GGATAAACAGTTTCAAAAGGAGTTCG 59.144 38.462 0.48 0.00 0.00 3.95
855 3918 3.692791 ACAGTTTCAAAAGGAGTTCGC 57.307 42.857 0.00 0.00 0.00 4.70
856 3919 2.031683 ACAGTTTCAAAAGGAGTTCGCG 59.968 45.455 0.00 0.00 0.00 5.87
857 3920 2.286833 CAGTTTCAAAAGGAGTTCGCGA 59.713 45.455 3.71 3.71 0.00 5.87
858 3921 2.544267 AGTTTCAAAAGGAGTTCGCGAG 59.456 45.455 9.59 0.00 0.00 5.03
859 3922 2.519377 TTCAAAAGGAGTTCGCGAGA 57.481 45.000 9.59 0.00 39.20 4.04
860 3923 2.065993 TCAAAAGGAGTTCGCGAGAG 57.934 50.000 9.59 0.00 43.69 3.20
862 3925 2.035449 TCAAAAGGAGTTCGCGAGAGAA 59.965 45.455 9.59 0.00 43.69 2.87
863 3926 2.355717 AAAGGAGTTCGCGAGAGAAG 57.644 50.000 9.59 0.00 43.69 2.85
896 5612 9.710900 AAACCATATTCAAAAGGAATTGTCTTC 57.289 29.630 0.00 0.00 43.76 2.87
897 5613 8.655935 ACCATATTCAAAAGGAATTGTCTTCT 57.344 30.769 0.00 0.00 43.76 2.85
899 5615 9.933723 CCATATTCAAAAGGAATTGTCTTCTTT 57.066 29.630 0.00 0.00 43.76 2.52
977 5785 1.076533 CCGTCACTTCGATTCCACCG 61.077 60.000 0.00 0.00 0.00 4.94
978 5786 1.076533 CGTCACTTCGATTCCACCGG 61.077 60.000 0.00 0.00 0.00 5.28
981 5789 1.375523 ACTTCGATTCCACCGGTGC 60.376 57.895 29.75 14.36 0.00 5.01
1385 8758 3.018423 TGGACGAGATGGAGATTCTGA 57.982 47.619 0.00 0.00 0.00 3.27
1386 8759 2.954989 TGGACGAGATGGAGATTCTGAG 59.045 50.000 0.00 0.00 0.00 3.35
1387 8760 2.295909 GGACGAGATGGAGATTCTGAGG 59.704 54.545 0.00 0.00 0.00 3.86
1388 8761 1.686052 ACGAGATGGAGATTCTGAGGC 59.314 52.381 0.00 0.00 0.00 4.70
1389 8762 1.962807 CGAGATGGAGATTCTGAGGCT 59.037 52.381 0.00 0.00 0.00 4.58
1588 8963 9.484806 GCCTGGTTAGTTATATACCCTCTTATA 57.515 37.037 0.00 0.00 0.00 0.98
1596 8971 9.629878 AGTTATATACCCTCTTATATCACCGAG 57.370 37.037 0.00 0.00 0.00 4.63
1597 8972 8.848182 GTTATATACCCTCTTATATCACCGAGG 58.152 40.741 0.00 0.00 42.09 4.63
1598 8973 3.897657 ACCCTCTTATATCACCGAGGA 57.102 47.619 5.78 0.00 44.56 3.71
1626 9007 2.372264 CAATGCTGGCACCTATCTGTT 58.628 47.619 0.00 0.00 0.00 3.16
1630 9011 4.235079 TGCTGGCACCTATCTGTTTATT 57.765 40.909 0.00 0.00 0.00 1.40
1632 9191 5.940617 TGCTGGCACCTATCTGTTTATTAT 58.059 37.500 0.00 0.00 0.00 1.28
1687 9257 4.452825 CCTCTTACTCGTCTGTCCATCTA 58.547 47.826 0.00 0.00 0.00 1.98
1773 9343 2.361737 GAGCTTGCCTTGGGGGAC 60.362 66.667 0.00 0.00 37.23 4.46
1782 9352 1.620822 CCTTGGGGGACAAAGACTTG 58.379 55.000 0.00 0.00 38.91 3.16
1843 9413 2.231721 GACTCCGACCTCTGCTTACTTT 59.768 50.000 0.00 0.00 0.00 2.66
1845 9415 2.494073 CTCCGACCTCTGCTTACTTTCT 59.506 50.000 0.00 0.00 0.00 2.52
1963 9546 7.506261 AGACAGTAACCAGTTTCTTCTTCTCTA 59.494 37.037 0.00 0.00 0.00 2.43
1964 9547 7.662897 ACAGTAACCAGTTTCTTCTTCTCTAG 58.337 38.462 0.00 0.00 0.00 2.43
1990 9573 2.554370 TCTTACCTTTGAACGGGTGG 57.446 50.000 0.00 0.00 37.07 4.61
2012 9609 4.038042 GGCCCCAAATATTTCTCTTACAGC 59.962 45.833 0.00 0.00 0.00 4.40
2038 9635 5.824624 ACGGAATCATGACTGCAATTTCTAT 59.175 36.000 0.00 0.00 0.00 1.98
2061 10618 9.330063 CTATTTCTTGTGGAGATTGCATAGTTA 57.670 33.333 0.00 0.00 33.49 2.24
2151 10719 6.321181 ACAACAATTATACCATCTTCGCCAAT 59.679 34.615 0.00 0.00 0.00 3.16
2155 10723 7.719633 ACAATTATACCATCTTCGCCAATAGTT 59.280 33.333 0.00 0.00 0.00 2.24
2156 10724 7.672983 ATTATACCATCTTCGCCAATAGTTG 57.327 36.000 0.00 0.00 0.00 3.16
2157 10725 3.350219 ACCATCTTCGCCAATAGTTGT 57.650 42.857 0.00 0.00 0.00 3.32
2158 10726 3.009723 ACCATCTTCGCCAATAGTTGTG 58.990 45.455 0.00 0.00 0.00 3.33
2159 10727 3.270027 CCATCTTCGCCAATAGTTGTGA 58.730 45.455 0.00 0.00 0.00 3.58
2160 10728 3.689161 CCATCTTCGCCAATAGTTGTGAA 59.311 43.478 0.00 0.00 0.00 3.18
2194 10762 8.244113 AGAACGGCTTTTCAATTAAATAGAAGG 58.756 33.333 0.00 0.00 0.00 3.46
2196 10764 5.748630 CGGCTTTTCAATTAAATAGAAGGGC 59.251 40.000 0.00 0.00 0.00 5.19
2197 10765 6.405842 CGGCTTTTCAATTAAATAGAAGGGCT 60.406 38.462 0.00 0.00 0.00 5.19
2198 10766 7.331026 GGCTTTTCAATTAAATAGAAGGGCTT 58.669 34.615 0.00 0.00 0.00 4.35
2244 11609 5.187772 TCTCAGGACAGCTGTAATATGTTGT 59.812 40.000 21.73 0.00 0.00 3.32
2292 11663 3.620821 GGAGTGAGTATGAAAGCTTGAGC 59.379 47.826 0.00 0.00 42.49 4.26
2415 11786 7.412020 CGATCAGCTAGTCCAAGTTTAAAACTC 60.412 40.741 0.00 0.00 41.91 3.01
2536 12775 2.827921 ACCTCTCAAAACCATGGAATGC 59.172 45.455 21.47 0.00 44.97 3.56
2722 12969 3.445096 CCTTTGTCCCTTGCTCATTTAGG 59.555 47.826 0.00 0.00 0.00 2.69
2732 12979 4.551702 TGCTCATTTAGGTTGTCAGCTA 57.448 40.909 0.00 0.00 31.45 3.32
2851 13098 3.181487 CCGTGCCTATTTTGAGATTTGGG 60.181 47.826 0.00 0.00 0.00 4.12
3079 13337 1.021202 CGCCAACACACTTTGAAGGA 58.979 50.000 0.00 0.00 0.00 3.36
3086 13344 2.364324 ACACACTTTGAAGGACGAGCTA 59.636 45.455 0.00 0.00 0.00 3.32
3127 13385 2.222027 GCAACTGGAGCAACAAGTAGT 58.778 47.619 0.00 0.00 0.00 2.73
3182 13461 9.237187 TGTGTTTTCATTGGCTAATTAGTATCA 57.763 29.630 13.91 7.58 0.00 2.15
3198 13481 8.662781 ATTAGTATCACTTACGATGCAAATGT 57.337 30.769 0.00 0.00 35.84 2.71
3202 13485 7.962918 AGTATCACTTACGATGCAAATGTTTTC 59.037 33.333 0.00 0.00 35.84 2.29
3220 13504 0.881118 TCATCGTTTTCCCTTGCAGC 59.119 50.000 0.00 0.00 0.00 5.25
3256 13540 5.128991 ACAGAGGGCATTAGTAAGGAAGTAC 59.871 44.000 0.00 0.00 0.00 2.73
3301 13589 5.357878 TGGTCTTGCATCAATTGGAATCTAC 59.642 40.000 5.42 0.00 34.90 2.59
3302 13590 5.504665 GGTCTTGCATCAATTGGAATCTACG 60.505 44.000 5.42 0.00 34.90 3.51
3303 13591 5.065218 GTCTTGCATCAATTGGAATCTACGT 59.935 40.000 5.42 0.00 34.90 3.57
3304 13592 6.257849 GTCTTGCATCAATTGGAATCTACGTA 59.742 38.462 5.42 0.00 34.90 3.57
3381 14505 2.625314 CCAGATTGGATAGCTCGTGAGA 59.375 50.000 0.00 0.00 40.96 3.27
3438 14572 8.774586 GTTGTGTAGATATTAATTGGTAGGCAG 58.225 37.037 0.00 0.00 0.00 4.85
3644 21697 4.398598 CGGTTCCTTTTGCCGCCG 62.399 66.667 0.00 0.00 38.99 6.46
3655 21708 4.356442 GCCGCCGTTGCCATGTTT 62.356 61.111 0.00 0.00 0.00 2.83
3681 21734 5.481824 TGTTGCTCCTATATATGGTCAGAGG 59.518 44.000 0.00 0.00 0.00 3.69
3749 21807 3.089838 CTGACCCCATGGCAGGAA 58.910 61.111 13.52 1.47 34.24 3.36
3792 21850 2.573340 GGCAAAATGGCGTGAGGG 59.427 61.111 0.00 0.00 31.79 4.30
3793 21851 1.976474 GGCAAAATGGCGTGAGGGA 60.976 57.895 0.00 0.00 31.79 4.20
3795 21853 1.937546 GCAAAATGGCGTGAGGGAGG 61.938 60.000 0.00 0.00 0.00 4.30
3796 21854 1.678970 AAAATGGCGTGAGGGAGGC 60.679 57.895 0.00 0.00 34.52 4.70
3800 21858 1.271840 ATGGCGTGAGGGAGGCTTTA 61.272 55.000 0.00 0.00 35.67 1.85
3801 21859 1.298667 GGCGTGAGGGAGGCTTTAA 59.701 57.895 0.00 0.00 35.67 1.52
3837 21963 0.674581 TGCAGGAGATTCCAAGCACG 60.675 55.000 10.06 0.00 42.29 5.34
3838 21964 0.391661 GCAGGAGATTCCAAGCACGA 60.392 55.000 0.00 0.00 39.61 4.35
3839 21965 1.945819 GCAGGAGATTCCAAGCACGAA 60.946 52.381 0.00 0.00 39.61 3.85
3840 21966 2.426522 CAGGAGATTCCAAGCACGAAA 58.573 47.619 0.00 0.00 39.61 3.46
3841 21967 3.012518 CAGGAGATTCCAAGCACGAAAT 58.987 45.455 0.00 0.00 39.61 2.17
3842 21968 3.441572 CAGGAGATTCCAAGCACGAAATT 59.558 43.478 0.00 0.00 39.61 1.82
3843 21969 3.441572 AGGAGATTCCAAGCACGAAATTG 59.558 43.478 0.00 0.00 39.61 2.32
3844 21970 3.191371 GGAGATTCCAAGCACGAAATTGT 59.809 43.478 0.00 0.00 36.28 2.71
3845 21971 4.161333 GAGATTCCAAGCACGAAATTGTG 58.839 43.478 0.00 0.00 42.81 3.33
3846 21972 3.569701 AGATTCCAAGCACGAAATTGTGT 59.430 39.130 2.91 0.00 41.94 3.72
3847 21973 2.772568 TCCAAGCACGAAATTGTGTG 57.227 45.000 6.06 6.06 41.94 3.82
3866 21992 0.451783 GCCGCAAACTCATACCCTTG 59.548 55.000 0.00 0.00 0.00 3.61
3897 22023 3.122948 GCTCAAAACTCAAATGCATGCAG 59.877 43.478 26.69 14.25 0.00 4.41
3906 22032 5.142061 TCAAATGCATGCAGATTTTGACT 57.858 34.783 30.34 10.57 31.57 3.41
3916 22042 6.335471 TGCAGATTTTGACTGAATGAATGT 57.665 33.333 0.00 0.00 37.54 2.71
3948 22074 4.671831 TGAAGGATGCAAAGGGTAAATCA 58.328 39.130 0.00 0.00 0.00 2.57
3959 22085 8.469200 TGCAAAGGGTAAATCATTTCAGATAAG 58.531 33.333 0.00 0.00 0.00 1.73
4000 22126 0.670162 GCTGCTGCTTGTCTGGAAAA 59.330 50.000 8.53 0.00 36.03 2.29
4072 22198 0.961857 GGATGATGTGGTGCAGTGCA 60.962 55.000 15.37 15.37 35.60 4.57
4078 22204 1.042003 TGTGGTGCAGTGCAAATGGT 61.042 50.000 21.67 0.00 41.47 3.55
4080 22206 0.958091 TGGTGCAGTGCAAATGGTAC 59.042 50.000 21.67 5.13 41.47 3.34
4096 22222 1.318576 GTACTGCCAGCAACCAACTT 58.681 50.000 0.00 0.00 0.00 2.66
4098 22224 1.318576 ACTGCCAGCAACCAACTTAC 58.681 50.000 0.00 0.00 0.00 2.34
4122 22248 4.947388 TGAGCCATGTACCTTTCATTTACC 59.053 41.667 0.00 0.00 0.00 2.85
4158 22286 8.573885 AGTAATTTTGCTTAAACAAGTACTCCC 58.426 33.333 0.00 0.00 0.00 4.30
4159 22287 7.597288 AATTTTGCTTAAACAAGTACTCCCT 57.403 32.000 0.00 0.00 0.00 4.20
4160 22288 6.628919 TTTTGCTTAAACAAGTACTCCCTC 57.371 37.500 0.00 0.00 0.00 4.30
4161 22289 4.281898 TGCTTAAACAAGTACTCCCTCC 57.718 45.455 0.00 0.00 0.00 4.30
4162 22290 3.259902 GCTTAAACAAGTACTCCCTCCG 58.740 50.000 0.00 0.00 0.00 4.63
4163 22291 3.306571 GCTTAAACAAGTACTCCCTCCGT 60.307 47.826 0.00 0.00 0.00 4.69
4164 22292 4.801914 GCTTAAACAAGTACTCCCTCCGTT 60.802 45.833 0.00 0.00 0.00 4.44
4165 22293 3.397849 AAACAAGTACTCCCTCCGTTC 57.602 47.619 0.00 0.00 0.00 3.95
4166 22294 1.264295 ACAAGTACTCCCTCCGTTCC 58.736 55.000 0.00 0.00 0.00 3.62
4167 22295 1.263356 CAAGTACTCCCTCCGTTCCA 58.737 55.000 0.00 0.00 0.00 3.53
4168 22296 1.621814 CAAGTACTCCCTCCGTTCCAA 59.378 52.381 0.00 0.00 0.00 3.53
4169 22297 2.019807 AGTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
4170 22298 2.332117 AGTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
4171 22299 2.910977 AGTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
4172 22300 4.098894 AGTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
4173 22301 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
4174 22302 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
4175 22303 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
4176 22304 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
4177 22305 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
4178 22306 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
4179 22307 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
4180 22308 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
4181 22309 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
4182 22310 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
4183 22311 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
4184 22312 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
4185 22313 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
4186 22314 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
4187 22315 7.094549 CGTTCCAAAATAGATGACCCAACTTTA 60.095 37.037 0.00 0.00 0.00 1.85
4188 22316 8.749354 GTTCCAAAATAGATGACCCAACTTTAT 58.251 33.333 0.00 0.00 0.00 1.40
4189 22317 8.893563 TCCAAAATAGATGACCCAACTTTATT 57.106 30.769 0.00 0.00 0.00 1.40
4190 22318 8.966868 TCCAAAATAGATGACCCAACTTTATTC 58.033 33.333 0.00 0.00 0.00 1.75
4191 22319 8.971073 CCAAAATAGATGACCCAACTTTATTCT 58.029 33.333 0.00 0.00 0.00 2.40
4197 22325 8.970859 AGATGACCCAACTTTATTCTATCAAG 57.029 34.615 0.00 0.00 0.00 3.02
4198 22326 8.552296 AGATGACCCAACTTTATTCTATCAAGT 58.448 33.333 0.00 0.00 31.90 3.16
4199 22327 9.178758 GATGACCCAACTTTATTCTATCAAGTT 57.821 33.333 0.00 0.00 40.61 2.66
4201 22329 9.667107 TGACCCAACTTTATTCTATCAAGTTAG 57.333 33.333 0.00 0.00 38.43 2.34
4202 22330 9.668497 GACCCAACTTTATTCTATCAAGTTAGT 57.332 33.333 0.00 0.00 38.43 2.24
4218 22346 9.614792 ATCAAGTTAGTATAAAGTTGGGTCATC 57.385 33.333 5.34 0.00 39.32 2.92
4219 22347 8.822805 TCAAGTTAGTATAAAGTTGGGTCATCT 58.177 33.333 5.34 0.00 39.32 2.90
4231 22359 9.942850 AAAGTTGGGTCATCTATTTTAAAATGG 57.057 29.630 21.19 18.54 0.00 3.16
4232 22360 8.893563 AGTTGGGTCATCTATTTTAAAATGGA 57.106 30.769 23.94 23.94 39.67 3.41
4233 22361 8.971073 AGTTGGGTCATCTATTTTAAAATGGAG 58.029 33.333 25.18 18.55 38.91 3.86
4234 22362 7.896383 TGGGTCATCTATTTTAAAATGGAGG 57.104 36.000 24.56 24.56 38.91 4.30
4235 22363 6.838612 TGGGTCATCTATTTTAAAATGGAGGG 59.161 38.462 27.66 21.79 38.91 4.30
4308 22436 3.515901 AGACAGATAGAAGGGGTTGTGTC 59.484 47.826 0.00 0.00 34.55 3.67
4315 22443 0.458260 AAGGGGTTGTGTCGCAAAAC 59.542 50.000 0.00 4.81 39.03 2.43
4355 22483 1.269988 CCAGACAGACAGACACTGGTG 60.270 57.143 0.00 0.00 41.91 4.17
4383 22511 7.071917 CCACCTAACCTAAGTACCTAACCTAT 58.928 42.308 0.00 0.00 0.00 2.57
4420 22548 1.735920 CTCACGTGAGCTCCACTGC 60.736 63.158 31.00 0.00 43.53 4.40
4421 22549 3.108289 CACGTGAGCTCCACTGCG 61.108 66.667 10.90 10.28 43.53 5.18
4428 22556 1.891060 GAGCTCCACTGCGTTGTTCG 61.891 60.000 0.87 0.00 43.12 3.95
4484 22617 4.475381 TGATACCAAATAGCACCCCTGTTA 59.525 41.667 0.00 0.00 0.00 2.41
4485 22618 3.081710 ACCAAATAGCACCCCTGTTAC 57.918 47.619 0.00 0.00 0.00 2.50
4486 22619 2.377193 ACCAAATAGCACCCCTGTTACA 59.623 45.455 0.00 0.00 0.00 2.41
4487 22620 3.011257 ACCAAATAGCACCCCTGTTACAT 59.989 43.478 0.00 0.00 0.00 2.29
4488 22621 4.023291 CCAAATAGCACCCCTGTTACATT 58.977 43.478 0.00 0.00 0.00 2.71
4489 22622 4.097892 CCAAATAGCACCCCTGTTACATTC 59.902 45.833 0.00 0.00 0.00 2.67
4490 22623 4.862641 AATAGCACCCCTGTTACATTCT 57.137 40.909 0.00 0.00 0.00 2.40
4491 22624 2.496899 AGCACCCCTGTTACATTCTG 57.503 50.000 0.00 0.00 0.00 3.02
4540 22673 4.809673 CTTAATTCCTTTTGCCGAAAGCT 58.190 39.130 0.00 0.00 42.79 3.74
4563 22696 8.827677 AGCTTTTATTTTACTACGATGATGGTC 58.172 33.333 0.00 0.00 0.00 4.02
4564 22697 8.827677 GCTTTTATTTTACTACGATGATGGTCT 58.172 33.333 0.00 0.00 0.00 3.85
4566 22699 9.878667 TTTTATTTTACTACGATGATGGTCTCA 57.121 29.630 0.00 0.00 38.53 3.27
4568 22701 7.953158 ATTTTACTACGATGATGGTCTCATG 57.047 36.000 0.00 0.00 44.83 3.07
4569 22702 6.465439 TTTACTACGATGATGGTCTCATGT 57.535 37.500 0.00 0.00 44.83 3.21
4570 22703 4.313277 ACTACGATGATGGTCTCATGTG 57.687 45.455 0.00 0.00 44.83 3.21
4571 22704 3.701542 ACTACGATGATGGTCTCATGTGT 59.298 43.478 0.00 0.00 44.83 3.72
4572 22705 2.897436 ACGATGATGGTCTCATGTGTG 58.103 47.619 0.00 0.00 44.83 3.82
4573 22706 1.596260 CGATGATGGTCTCATGTGTGC 59.404 52.381 0.00 0.00 44.83 4.57
4574 22707 1.596260 GATGATGGTCTCATGTGTGCG 59.404 52.381 0.00 0.00 44.83 5.34
4575 22708 0.391528 TGATGGTCTCATGTGTGCGG 60.392 55.000 0.00 0.00 32.98 5.69
4576 22709 0.391661 GATGGTCTCATGTGTGCGGT 60.392 55.000 0.00 0.00 32.98 5.68
4577 22710 0.674581 ATGGTCTCATGTGTGCGGTG 60.675 55.000 0.00 0.00 31.34 4.94
4578 22711 1.301716 GGTCTCATGTGTGCGGTGT 60.302 57.895 0.00 0.00 0.00 4.16
4579 22712 0.037697 GGTCTCATGTGTGCGGTGTA 60.038 55.000 0.00 0.00 0.00 2.90
4580 22713 1.606994 GGTCTCATGTGTGCGGTGTAA 60.607 52.381 0.00 0.00 0.00 2.41
4581 22714 1.726791 GTCTCATGTGTGCGGTGTAAG 59.273 52.381 0.00 0.00 0.00 2.34
4582 22715 0.443869 CTCATGTGTGCGGTGTAAGC 59.556 55.000 0.00 0.00 0.00 3.09
4583 22716 0.034756 TCATGTGTGCGGTGTAAGCT 59.965 50.000 0.00 0.00 35.28 3.74
4584 22717 0.874390 CATGTGTGCGGTGTAAGCTT 59.126 50.000 3.48 3.48 35.28 3.74
4585 22718 0.874390 ATGTGTGCGGTGTAAGCTTG 59.126 50.000 9.86 0.00 35.28 4.01
4586 22719 0.462937 TGTGTGCGGTGTAAGCTTGT 60.463 50.000 9.86 0.00 35.28 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 0.326618 TTCCTTGGCCTCCCTCCTAG 60.327 60.000 3.32 0.00 0.00 3.02
128 129 4.289672 AGAGGTGTGATTTGGTATTGGAGT 59.710 41.667 0.00 0.00 0.00 3.85
144 145 4.417437 AGTGAACCACTGTATAGAGGTGT 58.583 43.478 9.29 0.86 45.62 4.16
256 257 9.944663 GCCATATGACAAAATAAAACTTATCGA 57.055 29.630 3.65 0.00 0.00 3.59
268 269 3.448301 CCACCAGTGCCATATGACAAAAT 59.552 43.478 3.65 0.00 0.00 1.82
286 287 4.945543 TCATATCAATCATAGCATGCCACC 59.054 41.667 15.66 0.00 0.00 4.61
290 291 8.027189 ACACAATTCATATCAATCATAGCATGC 58.973 33.333 10.51 10.51 0.00 4.06
471 1919 5.324409 TGAAACCCATAAGCTTCACTTCAT 58.676 37.500 0.00 0.00 39.97 2.57
492 2142 4.422073 ACTCTCCTTTGTGTGACAATGA 57.578 40.909 0.00 0.00 38.00 2.57
497 2147 4.945246 TGACTAACTCTCCTTTGTGTGAC 58.055 43.478 0.00 0.00 0.00 3.67
498 2148 5.105106 TGTTGACTAACTCTCCTTTGTGTGA 60.105 40.000 0.00 0.00 37.68 3.58
503 2153 6.146347 GCTTAGTGTTGACTAACTCTCCTTTG 59.854 42.308 0.00 0.00 39.34 2.77
595 2246 2.158813 TGGAGACAAACTGGTTGGAGAC 60.159 50.000 10.61 0.00 41.97 3.36
596 2247 2.104792 CTGGAGACAAACTGGTTGGAGA 59.895 50.000 10.61 0.00 41.97 3.71
602 2253 1.202698 GCAGACTGGAGACAAACTGGT 60.203 52.381 4.26 0.00 41.08 4.00
604 2255 2.141517 CTGCAGACTGGAGACAAACTG 58.858 52.381 18.49 0.00 38.14 3.16
607 2258 1.423584 TCCTGCAGACTGGAGACAAA 58.576 50.000 24.19 5.09 38.14 2.83
610 2261 2.147150 GTTTTCCTGCAGACTGGAGAC 58.853 52.381 24.19 11.11 43.92 3.36
615 2266 0.868406 GTCCGTTTTCCTGCAGACTG 59.132 55.000 17.39 1.54 0.00 3.51
647 2298 2.595463 TACCCTATCGGTCCGCGG 60.595 66.667 22.12 22.12 43.58 6.46
650 2301 0.601558 CATGGTACCCTATCGGTCCG 59.398 60.000 10.07 4.39 43.58 4.79
689 2340 1.606313 AAGGCGACCCCAAACCATG 60.606 57.895 0.00 0.00 35.39 3.66
703 2354 2.614057 CAATCCGGAGTTACATCAAGGC 59.386 50.000 11.34 0.00 0.00 4.35
704 2355 2.614057 GCAATCCGGAGTTACATCAAGG 59.386 50.000 11.34 0.00 0.00 3.61
719 2797 2.799412 GAGTGACTCATCGATGCAATCC 59.201 50.000 20.81 8.12 41.39 3.01
729 2807 7.231317 AGAGAGAATATCAAGGAGTGACTCATC 59.769 40.741 15.33 0.00 39.72 2.92
830 2912 6.359883 GCGAACTCCTTTTGAAACTGTTTATC 59.640 38.462 5.64 0.00 0.00 1.75
831 2913 6.206498 GCGAACTCCTTTTGAAACTGTTTAT 58.794 36.000 5.64 0.00 0.00 1.40
838 3901 2.542595 TCTCGCGAACTCCTTTTGAAAC 59.457 45.455 11.33 0.00 0.00 2.78
847 3910 0.526662 TTCCTTCTCTCGCGAACTCC 59.473 55.000 11.33 0.00 0.00 3.85
848 3911 2.349297 TTTCCTTCTCTCGCGAACTC 57.651 50.000 11.33 0.00 0.00 3.01
849 3912 2.814280 TTTTCCTTCTCTCGCGAACT 57.186 45.000 11.33 0.00 0.00 3.01
873 3936 9.933723 AAAGAAGACAATTCCTTTTGAATATGG 57.066 29.630 0.00 0.00 42.97 2.74
902 5618 8.547481 AGAAGACAATTCCTTTTCCCTAAAAA 57.453 30.769 0.00 0.00 34.26 1.94
904 5620 7.782644 TCAAGAAGACAATTCCTTTTCCCTAAA 59.217 33.333 0.00 0.00 0.00 1.85
905 5621 7.294584 TCAAGAAGACAATTCCTTTTCCCTAA 58.705 34.615 0.00 0.00 0.00 2.69
906 5622 6.848069 TCAAGAAGACAATTCCTTTTCCCTA 58.152 36.000 0.00 0.00 0.00 3.53
908 5624 6.596309 ATCAAGAAGACAATTCCTTTTCCC 57.404 37.500 0.00 0.00 0.00 3.97
938 5674 0.684805 CGAGGGCTCTTGGGAGTACT 60.685 60.000 0.00 0.00 41.38 2.73
939 5675 1.817209 CGAGGGCTCTTGGGAGTAC 59.183 63.158 0.00 0.00 41.38 2.73
940 5676 2.058595 GCGAGGGCTCTTGGGAGTA 61.059 63.158 2.14 0.00 41.38 2.59
941 5677 3.394836 GCGAGGGCTCTTGGGAGT 61.395 66.667 2.14 0.00 41.38 3.85
945 5681 4.821589 GACGGCGAGGGCTCTTGG 62.822 72.222 16.62 0.00 39.81 3.61
947 5683 4.070552 GTGACGGCGAGGGCTCTT 62.071 66.667 16.62 0.00 39.81 2.85
949 5685 3.991536 GAAGTGACGGCGAGGGCTC 62.992 68.421 16.62 0.00 39.81 4.70
950 5686 4.070552 GAAGTGACGGCGAGGGCT 62.071 66.667 16.62 2.81 39.81 5.19
977 5785 2.013483 CTCTGATCGCGATCGCACC 61.013 63.158 36.05 24.50 40.63 5.01
978 5786 0.867753 AACTCTGATCGCGATCGCAC 60.868 55.000 36.05 26.19 40.63 5.34
981 5789 0.042100 TCGAACTCTGATCGCGATCG 60.042 55.000 36.05 30.06 40.63 3.69
1385 8758 1.625818 AGGACGAATCAACTTCAGCCT 59.374 47.619 0.00 0.00 34.11 4.58
1386 8759 2.003301 GAGGACGAATCAACTTCAGCC 58.997 52.381 0.00 0.00 33.10 4.85
1387 8760 2.003301 GGAGGACGAATCAACTTCAGC 58.997 52.381 0.00 0.00 33.10 4.26
1388 8761 3.056536 TGAGGAGGACGAATCAACTTCAG 60.057 47.826 0.00 0.00 33.10 3.02
1389 8762 2.897326 TGAGGAGGACGAATCAACTTCA 59.103 45.455 0.00 0.00 33.10 3.02
1588 8963 0.544357 TGGTGTTCCTCCTCGGTGAT 60.544 55.000 0.00 0.00 34.23 3.06
1590 8965 0.324943 ATTGGTGTTCCTCCTCGGTG 59.675 55.000 0.00 0.00 34.23 4.94
1593 8968 0.036010 AGCATTGGTGTTCCTCCTCG 60.036 55.000 0.00 0.00 34.23 4.63
1595 8970 0.038744 CCAGCATTGGTGTTCCTCCT 59.961 55.000 14.29 0.00 39.79 3.69
1596 8971 1.598701 GCCAGCATTGGTGTTCCTCC 61.599 60.000 14.29 0.00 46.80 4.30
1597 8972 0.895100 TGCCAGCATTGGTGTTCCTC 60.895 55.000 14.29 0.17 46.80 3.71
1598 8973 1.153524 TGCCAGCATTGGTGTTCCT 59.846 52.632 14.29 0.00 46.80 3.36
1659 9219 4.514816 GGACAGACGAGTAAGAGGGTATAC 59.485 50.000 0.00 0.00 0.00 1.47
1660 9220 4.164796 TGGACAGACGAGTAAGAGGGTATA 59.835 45.833 0.00 0.00 0.00 1.47
1661 9221 3.053842 TGGACAGACGAGTAAGAGGGTAT 60.054 47.826 0.00 0.00 0.00 2.73
1662 9222 2.306805 TGGACAGACGAGTAAGAGGGTA 59.693 50.000 0.00 0.00 0.00 3.69
1663 9223 1.075050 TGGACAGACGAGTAAGAGGGT 59.925 52.381 0.00 0.00 0.00 4.34
1665 9225 3.283751 AGATGGACAGACGAGTAAGAGG 58.716 50.000 0.00 0.00 0.00 3.69
1666 9226 5.529430 ACATAGATGGACAGACGAGTAAGAG 59.471 44.000 0.00 0.00 0.00 2.85
1667 9227 5.437946 ACATAGATGGACAGACGAGTAAGA 58.562 41.667 0.00 0.00 0.00 2.10
1687 9257 6.655078 ATGCTTTCCTTTCAACAACTACAT 57.345 33.333 0.00 0.00 0.00 2.29
1748 9318 0.743097 CAAGGCAAGCTCAATAGGGC 59.257 55.000 0.00 0.00 0.00 5.19
1773 9343 3.412386 CAGGTAAGGGGACAAGTCTTTG 58.588 50.000 0.00 0.00 40.24 2.77
1782 9352 1.490910 CCATCTTCCAGGTAAGGGGAC 59.509 57.143 0.00 0.00 31.59 4.46
1843 9413 1.819288 CTGGTAGTCGCTCAAGGAAGA 59.181 52.381 0.00 0.00 0.00 2.87
1845 9415 0.246635 GCTGGTAGTCGCTCAAGGAA 59.753 55.000 0.00 0.00 0.00 3.36
1903 9486 7.874528 CACAGATTAAGTCCATATGCATCACTA 59.125 37.037 0.19 0.00 0.00 2.74
1963 9546 5.298347 CCGTTCAAAGGTAAGAAGAGAACT 58.702 41.667 0.00 0.00 33.61 3.01
1964 9547 4.451435 CCCGTTCAAAGGTAAGAAGAGAAC 59.549 45.833 0.00 0.00 0.00 3.01
1990 9573 4.889995 AGCTGTAAGAGAAATATTTGGGGC 59.110 41.667 5.17 0.00 34.07 5.80
2012 9609 5.295292 AGAAATTGCAGTCATGATTCCGTAG 59.705 40.000 0.00 0.00 0.00 3.51
2038 9635 7.994425 TTAACTATGCAATCTCCACAAGAAA 57.006 32.000 0.00 0.00 37.61 2.52
2140 10708 5.415701 ACAATTCACAACTATTGGCGAAGAT 59.584 36.000 0.00 0.00 36.34 2.40
2151 10719 5.350365 GCCGTTCTATCACAATTCACAACTA 59.650 40.000 0.00 0.00 0.00 2.24
2155 10723 3.937814 AGCCGTTCTATCACAATTCACA 58.062 40.909 0.00 0.00 0.00 3.58
2156 10724 4.946784 AAGCCGTTCTATCACAATTCAC 57.053 40.909 0.00 0.00 0.00 3.18
2157 10725 5.471797 TGAAAAGCCGTTCTATCACAATTCA 59.528 36.000 0.00 0.00 0.00 2.57
2158 10726 5.938322 TGAAAAGCCGTTCTATCACAATTC 58.062 37.500 0.00 0.00 0.00 2.17
2159 10727 5.957842 TGAAAAGCCGTTCTATCACAATT 57.042 34.783 0.00 0.00 0.00 2.32
2160 10728 5.957842 TTGAAAAGCCGTTCTATCACAAT 57.042 34.783 0.00 0.00 0.00 2.71
2193 10761 5.772825 TGCATCACTATATTGAAAAGCCC 57.227 39.130 0.00 0.00 0.00 5.19
2194 10762 8.652810 AAAATGCATCACTATATTGAAAAGCC 57.347 30.769 0.00 0.00 0.00 4.35
2201 10769 8.843262 TCCTGAGAAAAATGCATCACTATATTG 58.157 33.333 0.00 0.00 0.00 1.90
2244 11609 4.097892 GTCTGCACCAGAAAAGAAGGAAAA 59.902 41.667 0.00 0.00 42.46 2.29
2292 11663 7.357303 GGGTGTTATAAAACGCTATGTATTGG 58.643 38.462 14.09 0.00 44.04 3.16
2472 12708 7.867909 CGGAGTATCTTCTTTAAGCACATGATA 59.132 37.037 0.00 0.00 33.73 2.15
2536 12775 6.701841 ACAATGCGTATGTAGAGATTAGTTGG 59.298 38.462 0.00 0.00 0.00 3.77
2722 12969 5.063944 CACAACCATGACTATAGCTGACAAC 59.936 44.000 0.00 0.00 0.00 3.32
2732 12979 4.890158 TGTCAGACACAACCATGACTAT 57.110 40.909 0.00 0.00 42.02 2.12
2851 13098 2.125106 CTGCCCAGTAACCCGCTC 60.125 66.667 0.00 0.00 0.00 5.03
3079 13337 2.181021 CGGGTCGCTTTAGCTCGT 59.819 61.111 0.00 0.00 39.32 4.18
3086 13344 3.192103 AAAGCCTCCGGGTCGCTTT 62.192 57.895 22.58 22.58 45.52 3.51
3136 13394 8.948631 AACACATACAGAACTACTATGAATGG 57.051 34.615 0.00 0.00 0.00 3.16
3146 13420 6.714810 AGCCAATGAAAACACATACAGAACTA 59.285 34.615 0.00 0.00 0.00 2.24
3198 13481 3.798548 GCTGCAAGGGAAAACGATGAAAA 60.799 43.478 0.00 0.00 0.00 2.29
3202 13485 0.883833 AGCTGCAAGGGAAAACGATG 59.116 50.000 1.02 0.00 0.00 3.84
3256 13540 4.109766 CACACCACCACACTACATATACG 58.890 47.826 0.00 0.00 0.00 3.06
3322 14429 0.786581 GCGACATGATACATGAGCGG 59.213 55.000 16.86 5.60 0.00 5.52
3323 14430 1.718178 GAGCGACATGATACATGAGCG 59.282 52.381 16.86 17.85 33.91 5.03
3334 14442 4.742167 CCTATAGACACAAAGAGCGACATG 59.258 45.833 0.00 0.00 0.00 3.21
3381 14505 9.393512 CTTGAATCTAACTTCCTGAGAAATCAT 57.606 33.333 0.00 0.00 0.00 2.45
3426 14556 4.278310 GGGAACAATACTGCCTACCAATT 58.722 43.478 0.00 0.00 0.00 2.32
3427 14557 3.372675 GGGGAACAATACTGCCTACCAAT 60.373 47.826 0.00 0.00 0.00 3.16
3428 14558 2.025699 GGGGAACAATACTGCCTACCAA 60.026 50.000 0.00 0.00 0.00 3.67
3429 14559 1.562475 GGGGAACAATACTGCCTACCA 59.438 52.381 0.00 0.00 0.00 3.25
3438 14572 2.143876 ACATGCAGGGGGAACAATAC 57.856 50.000 2.31 0.00 0.00 1.89
3508 21561 0.838229 CGTACTGCGCATACGTCTTC 59.162 55.000 28.45 12.71 40.39 2.87
3644 21697 2.287644 GGAGCAACAAAAACATGGCAAC 59.712 45.455 0.00 0.00 0.00 4.17
3655 21708 7.373617 TCTGACCATATATAGGAGCAACAAA 57.626 36.000 0.00 0.00 0.00 2.83
3749 21807 1.133356 AGCTTTCCAGGTTGGCTCTTT 60.133 47.619 0.00 0.00 37.47 2.52
3786 21844 1.745653 GCACATTAAAGCCTCCCTCAC 59.254 52.381 0.00 0.00 0.00 3.51
3795 21853 3.871006 GCTTATTTGGGGCACATTAAAGC 59.129 43.478 12.68 12.68 33.23 3.51
3796 21854 5.111293 CAGCTTATTTGGGGCACATTAAAG 58.889 41.667 0.00 0.00 0.00 1.85
3800 21858 1.207811 GCAGCTTATTTGGGGCACATT 59.792 47.619 0.00 0.00 0.00 2.71
3801 21859 0.826062 GCAGCTTATTTGGGGCACAT 59.174 50.000 0.00 0.00 0.00 3.21
3814 21911 1.954258 GCTTGGAATCTCCTGCAGCTT 60.954 52.381 8.66 0.00 37.46 3.74
3837 21963 1.786579 GAGTTTGCGGCACACAATTTC 59.213 47.619 20.17 6.31 27.49 2.17
3838 21964 1.135915 TGAGTTTGCGGCACACAATTT 59.864 42.857 20.17 0.37 27.49 1.82
3839 21965 0.743688 TGAGTTTGCGGCACACAATT 59.256 45.000 20.17 1.45 27.49 2.32
3840 21966 0.961019 ATGAGTTTGCGGCACACAAT 59.039 45.000 20.17 10.95 27.49 2.71
3841 21967 1.265635 GTATGAGTTTGCGGCACACAA 59.734 47.619 20.17 9.20 0.00 3.33
3842 21968 0.871722 GTATGAGTTTGCGGCACACA 59.128 50.000 20.17 7.51 0.00 3.72
3843 21969 0.168128 GGTATGAGTTTGCGGCACAC 59.832 55.000 11.17 11.17 0.00 3.82
3844 21970 0.958382 GGGTATGAGTTTGCGGCACA 60.958 55.000 0.05 0.00 0.00 4.57
3845 21971 0.676782 AGGGTATGAGTTTGCGGCAC 60.677 55.000 0.05 0.00 0.00 5.01
3846 21972 0.037590 AAGGGTATGAGTTTGCGGCA 59.962 50.000 0.00 0.00 0.00 5.69
3847 21973 0.451783 CAAGGGTATGAGTTTGCGGC 59.548 55.000 0.00 0.00 0.00 6.53
3866 21992 5.679734 TTTGAGTTTTGAGCTGATCACTC 57.320 39.130 14.67 14.67 37.77 3.51
3897 22023 7.365741 ACAGTGACATTCATTCAGTCAAAATC 58.634 34.615 0.00 0.00 43.16 2.17
3906 22032 6.448207 TTCAACAACAGTGACATTCATTCA 57.552 33.333 0.00 0.00 0.00 2.57
3916 22042 2.929641 TGCATCCTTCAACAACAGTGA 58.070 42.857 0.00 0.00 0.00 3.41
3959 22085 6.423302 CAGCATGGACTCAACATATTAGACTC 59.577 42.308 0.00 0.00 0.00 3.36
3961 22087 5.049818 GCAGCATGGACTCAACATATTAGAC 60.050 44.000 0.00 0.00 35.86 2.59
3973 22099 0.959372 ACAAGCAGCAGCATGGACTC 60.959 55.000 11.10 0.00 43.41 3.36
4000 22126 1.678101 GCTGAACTTTCTGGCTTGTGT 59.322 47.619 0.00 0.00 0.00 3.72
4050 22176 0.627451 ACTGCACCACATCATCCCAT 59.373 50.000 0.00 0.00 0.00 4.00
4054 22180 0.883153 TTGCACTGCACCACATCATC 59.117 50.000 2.26 0.00 38.71 2.92
4055 22181 1.330234 TTTGCACTGCACCACATCAT 58.670 45.000 2.26 0.00 38.71 2.45
4078 22204 2.105821 AGTAAGTTGGTTGCTGGCAGTA 59.894 45.455 17.16 9.18 28.44 2.74
4080 22206 1.267806 CAGTAAGTTGGTTGCTGGCAG 59.732 52.381 10.94 10.94 43.27 4.85
4096 22222 5.435686 AATGAAAGGTACATGGCTCAGTA 57.564 39.130 0.00 0.00 0.00 2.74
4098 22224 5.066505 GGTAAATGAAAGGTACATGGCTCAG 59.933 44.000 0.00 0.00 0.00 3.35
4137 22263 5.533528 GGAGGGAGTACTTGTTTAAGCAAAA 59.466 40.000 6.21 0.00 37.43 2.44
4141 22269 3.259902 CGGAGGGAGTACTTGTTTAAGC 58.740 50.000 0.00 0.00 37.43 3.09
4155 22283 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
4156 22284 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
4157 22285 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
4158 22286 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
4159 22287 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
4160 22288 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
4161 22289 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
4162 22290 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
4163 22291 8.893563 ATAAAGTTGGGTCATCTATTTTGGAA 57.106 30.769 0.00 0.00 0.00 3.53
4164 22292 8.893563 AATAAAGTTGGGTCATCTATTTTGGA 57.106 30.769 0.00 0.00 0.00 3.53
4165 22293 8.971073 AGAATAAAGTTGGGTCATCTATTTTGG 58.029 33.333 0.00 0.00 0.00 3.28
4172 22300 8.552296 ACTTGATAGAATAAAGTTGGGTCATCT 58.448 33.333 0.00 0.00 29.98 2.90
4173 22301 8.738645 ACTTGATAGAATAAAGTTGGGTCATC 57.261 34.615 0.00 0.00 29.98 2.92
4175 22303 9.667107 CTAACTTGATAGAATAAAGTTGGGTCA 57.333 33.333 11.19 0.00 42.51 4.02
4176 22304 9.668497 ACTAACTTGATAGAATAAAGTTGGGTC 57.332 33.333 14.31 0.00 43.01 4.46
4192 22320 9.614792 GATGACCCAACTTTATACTAACTTGAT 57.385 33.333 0.00 0.00 0.00 2.57
4193 22321 8.822805 AGATGACCCAACTTTATACTAACTTGA 58.177 33.333 0.00 0.00 0.00 3.02
4205 22333 9.942850 CCATTTTAAAATAGATGACCCAACTTT 57.057 29.630 12.98 0.00 0.00 2.66
4206 22334 9.320295 TCCATTTTAAAATAGATGACCCAACTT 57.680 29.630 12.98 0.00 0.00 2.66
4207 22335 8.893563 TCCATTTTAAAATAGATGACCCAACT 57.106 30.769 12.98 0.00 0.00 3.16
4208 22336 8.197439 CCTCCATTTTAAAATAGATGACCCAAC 58.803 37.037 12.98 0.00 0.00 3.77
4209 22337 7.344352 CCCTCCATTTTAAAATAGATGACCCAA 59.656 37.037 12.98 0.00 0.00 4.12
4210 22338 6.838612 CCCTCCATTTTAAAATAGATGACCCA 59.161 38.462 12.98 0.00 0.00 4.51
4211 22339 7.066781 TCCCTCCATTTTAAAATAGATGACCC 58.933 38.462 12.98 0.00 0.00 4.46
4212 22340 7.780271 ACTCCCTCCATTTTAAAATAGATGACC 59.220 37.037 12.98 0.00 0.00 4.02
4213 22341 8.753497 ACTCCCTCCATTTTAAAATAGATGAC 57.247 34.615 12.98 0.00 0.00 3.06
4215 22343 8.787852 GCTACTCCCTCCATTTTAAAATAGATG 58.212 37.037 12.98 8.52 0.00 2.90
4216 22344 8.728098 AGCTACTCCCTCCATTTTAAAATAGAT 58.272 33.333 12.98 0.46 0.00 1.98
4217 22345 7.993183 CAGCTACTCCCTCCATTTTAAAATAGA 59.007 37.037 12.98 10.53 0.00 1.98
4218 22346 7.255277 GCAGCTACTCCCTCCATTTTAAAATAG 60.255 40.741 12.98 6.57 0.00 1.73
4219 22347 6.546034 GCAGCTACTCCCTCCATTTTAAAATA 59.454 38.462 12.98 0.00 0.00 1.40
4220 22348 5.360999 GCAGCTACTCCCTCCATTTTAAAAT 59.639 40.000 7.64 7.64 0.00 1.82
4221 22349 4.705023 GCAGCTACTCCCTCCATTTTAAAA 59.295 41.667 2.51 2.51 0.00 1.52
4222 22350 4.263727 TGCAGCTACTCCCTCCATTTTAAA 60.264 41.667 0.00 0.00 0.00 1.52
4223 22351 3.265737 TGCAGCTACTCCCTCCATTTTAA 59.734 43.478 0.00 0.00 0.00 1.52
4224 22352 2.843730 TGCAGCTACTCCCTCCATTTTA 59.156 45.455 0.00 0.00 0.00 1.52
4225 22353 1.635487 TGCAGCTACTCCCTCCATTTT 59.365 47.619 0.00 0.00 0.00 1.82
4226 22354 1.289160 TGCAGCTACTCCCTCCATTT 58.711 50.000 0.00 0.00 0.00 2.32
4227 22355 1.211457 CTTGCAGCTACTCCCTCCATT 59.789 52.381 0.00 0.00 0.00 3.16
4228 22356 0.835941 CTTGCAGCTACTCCCTCCAT 59.164 55.000 0.00 0.00 0.00 3.41
4229 22357 1.267574 CCTTGCAGCTACTCCCTCCA 61.268 60.000 0.00 0.00 0.00 3.86
4230 22358 1.268283 ACCTTGCAGCTACTCCCTCC 61.268 60.000 0.00 0.00 0.00 4.30
4231 22359 0.615850 AACCTTGCAGCTACTCCCTC 59.384 55.000 0.00 0.00 0.00 4.30
4232 22360 1.952621 TAACCTTGCAGCTACTCCCT 58.047 50.000 0.00 0.00 0.00 4.20
4233 22361 3.283259 AATAACCTTGCAGCTACTCCC 57.717 47.619 0.00 0.00 0.00 4.30
4234 22362 5.823045 ACAATAATAACCTTGCAGCTACTCC 59.177 40.000 0.00 0.00 0.00 3.85
4235 22363 6.927294 ACAATAATAACCTTGCAGCTACTC 57.073 37.500 0.00 0.00 0.00 2.59
4267 22395 8.422577 TCTGTCTGCCTTACATATACATACAT 57.577 34.615 0.00 0.00 0.00 2.29
4279 22407 3.070302 CCCCTTCTATCTGTCTGCCTTAC 59.930 52.174 0.00 0.00 0.00 2.34
4339 22467 1.139058 GGTTCACCAGTGTCTGTCTGT 59.861 52.381 0.00 0.00 35.64 3.41
4340 22468 1.138859 TGGTTCACCAGTGTCTGTCTG 59.861 52.381 0.00 0.00 42.01 3.51
4341 22469 1.496060 TGGTTCACCAGTGTCTGTCT 58.504 50.000 0.00 0.00 42.01 3.41
4355 22483 6.351371 GGTTAGGTACTTAGGTTAGGTGGTTC 60.351 46.154 0.00 0.00 41.75 3.62
4420 22548 8.814733 TTATTTGCATTTATAGTCGAACAACG 57.185 30.769 0.00 0.00 44.09 4.10
4463 22591 4.228666 TGTAACAGGGGTGCTATTTGGTAT 59.771 41.667 0.00 0.00 0.00 2.73
4485 22618 9.891828 TTGCAACTAAACAATTACTACAGAATG 57.108 29.630 0.00 0.00 46.00 2.67
4513 22646 4.016444 TCGGCAAAAGGAATTAAGCTCAT 58.984 39.130 0.00 0.00 0.00 2.90
4540 22673 9.878667 TGAGACCATCATCGTAGTAAAATAAAA 57.121 29.630 0.00 0.00 31.12 1.52
4563 22696 0.443869 GCTTACACCGCACACATGAG 59.556 55.000 0.00 0.00 0.00 2.90
4564 22697 0.034756 AGCTTACACCGCACACATGA 59.965 50.000 0.00 0.00 0.00 3.07
4565 22698 0.874390 AAGCTTACACCGCACACATG 59.126 50.000 0.00 0.00 0.00 3.21
4566 22699 0.874390 CAAGCTTACACCGCACACAT 59.126 50.000 0.00 0.00 0.00 3.21
4567 22700 0.462937 ACAAGCTTACACCGCACACA 60.463 50.000 0.00 0.00 0.00 3.72
4568 22701 2.317230 ACAAGCTTACACCGCACAC 58.683 52.632 0.00 0.00 0.00 3.82
4569 22702 4.868026 ACAAGCTTACACCGCACA 57.132 50.000 0.00 0.00 0.00 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.