Multiple sequence alignment - TraesCS3B01G581100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G581100 chr3B 100.000 5453 0 0 1 5453 809696525 809691073 0.000000e+00 10070.0
1 TraesCS3B01G581100 chr3B 97.847 3530 74 2 1794 5322 9352356 9348828 0.000000e+00 6096.0
2 TraesCS3B01G581100 chr3B 99.237 131 1 0 5323 5453 809766355 809766225 2.540000e-58 237.0
3 TraesCS3B01G581100 chr3B 100.000 28 0 0 5295 5322 9356957 9356984 1.000000e-02 52.8
4 TraesCS3B01G581100 chr3D 97.381 2864 65 6 203 3057 555283713 555286575 0.000000e+00 4865.0
5 TraesCS3B01G581100 chr3D 94.156 1215 42 3 4110 5322 555289882 555291069 0.000000e+00 1823.0
6 TraesCS3B01G581100 chr3D 98.127 267 5 0 3055 3321 555286837 555287103 2.970000e-127 466.0
7 TraesCS3B01G581100 chr3D 90.909 176 16 0 73 248 555283131 555283306 2.540000e-58 237.0
8 TraesCS3B01G581100 chr3D 98.473 131 2 0 5323 5453 74768780 74768910 1.180000e-56 231.0
9 TraesCS3B01G581100 chr6D 97.094 2856 67 10 215 3060 315868349 315865500 0.000000e+00 4800.0
10 TraesCS3B01G581100 chr6D 95.123 1907 83 5 3420 5324 315864955 315863057 0.000000e+00 2998.0
11 TraesCS3B01G581100 chr7A 96.292 2886 85 10 176 3060 372246359 372243495 0.000000e+00 4717.0
12 TraesCS3B01G581100 chr7A 95.609 1913 82 2 3420 5331 372242950 372241039 0.000000e+00 3066.0
13 TraesCS3B01G581100 chr7A 92.161 523 21 6 209 730 714011663 714012166 0.000000e+00 721.0
14 TraesCS3B01G581100 chr7A 98.473 131 2 0 5323 5453 123396857 123396987 1.180000e-56 231.0
15 TraesCS3B01G581100 chr7A 88.957 163 18 0 88 250 372246805 372246643 9.260000e-48 202.0
16 TraesCS3B01G581100 chr7A 94.545 110 5 1 1 109 372246733 372246624 9.390000e-38 169.0
17 TraesCS3B01G581100 chr7A 91.892 74 6 0 17 90 372246359 372246286 2.690000e-18 104.0
18 TraesCS3B01G581100 chr7A 96.226 53 1 1 1 52 714011177 714011229 9.730000e-13 86.1
19 TraesCS3B01G581100 chr3A 96.351 2850 76 11 213 3057 160387325 160390151 0.000000e+00 4662.0
20 TraesCS3B01G581100 chr3A 94.161 1884 79 4 3420 5299 160390699 160392555 0.000000e+00 2841.0
21 TraesCS3B01G581100 chr3A 94.779 1513 73 4 3792 5298 160368039 160369551 0.000000e+00 2351.0
22 TraesCS3B01G581100 chr3A 97.004 267 8 0 3055 3321 160390413 160390679 3.000000e-122 449.0
23 TraesCS3B01G581100 chr3A 98.473 131 2 0 5323 5453 196669509 196669379 1.180000e-56 231.0
24 TraesCS3B01G581100 chr3A 96.552 87 2 1 1 86 160386919 160387005 5.690000e-30 143.0
25 TraesCS3B01G581100 chr4D 93.960 2765 155 12 73 2831 157625853 157628611 0.000000e+00 4170.0
26 TraesCS3B01G581100 chr4D 88.010 2302 207 26 3055 5322 157629154 157631420 0.000000e+00 2658.0
27 TraesCS3B01G581100 chr4D 92.982 228 16 0 2829 3056 157628667 157628894 3.150000e-87 333.0
28 TraesCS3B01G581100 chr1B 92.480 2726 185 11 100 2809 563493932 563496653 0.000000e+00 3880.0
29 TraesCS3B01G581100 chr1B 97.438 1600 41 0 3073 4672 596960122 596958523 0.000000e+00 2728.0
30 TraesCS3B01G581100 chr1B 87.760 2304 215 24 3055 5322 563497141 563499413 0.000000e+00 2630.0
31 TraesCS3B01G581100 chr1B 93.541 1641 99 6 285 1920 646707857 646709495 0.000000e+00 2436.0
32 TraesCS3B01G581100 chr1B 89.545 1626 133 22 3055 4665 646717456 646719059 0.000000e+00 2026.0
33 TraesCS3B01G581100 chr1B 92.544 228 17 0 2829 3056 646716969 646717196 1.460000e-85 327.0
34 TraesCS3B01G581100 chr1B 92.166 217 17 0 73 289 646699150 646699366 1.910000e-79 307.0
35 TraesCS3B01G581100 chr1B 92.308 156 12 0 704 859 468478466 468478311 7.110000e-54 222.0
36 TraesCS3B01G581100 chr7B 98.167 2018 37 0 3305 5322 64339550 64337533 0.000000e+00 3522.0
37 TraesCS3B01G581100 chr7B 92.738 2272 141 13 3055 5323 707241808 707244058 0.000000e+00 3260.0
38 TraesCS3B01G581100 chr7B 93.382 2206 120 12 860 3057 707239358 707241545 0.000000e+00 3241.0
39 TraesCS3B01G581100 chr7B 90.602 266 24 1 89 354 707238538 707238802 8.690000e-93 351.0
40 TraesCS3B01G581100 chr7B 95.604 91 3 1 1 90 707238609 707238699 1.580000e-30 145.0
41 TraesCS3B01G581100 chr5A 96.586 2021 50 6 223 2242 17079876 17081878 0.000000e+00 3332.0
42 TraesCS3B01G581100 chr5A 95.591 1905 81 3 3420 5322 17083451 17085354 0.000000e+00 3049.0
43 TraesCS3B01G581100 chr5A 97.848 790 17 0 2268 3057 17082107 17082896 0.000000e+00 1365.0
44 TraesCS3B01G581100 chr4B 86.150 2195 217 43 3178 5322 366674847 366672690 0.000000e+00 2289.0
45 TraesCS3B01G581100 chr1A 89.113 891 81 6 3055 3934 139174178 139175063 0.000000e+00 1094.0
46 TraesCS3B01G581100 chr1A 89.671 213 22 0 2829 3041 139173747 139173959 6.960000e-69 272.0
47 TraesCS3B01G581100 chr1D 89.596 644 63 3 2165 2804 33761133 33761776 0.000000e+00 815.0
48 TraesCS3B01G581100 chr1D 98.473 131 2 0 5323 5453 250884314 250884444 1.180000e-56 231.0
49 TraesCS3B01G581100 chr6B 84.667 750 106 7 2062 2804 430914936 430915683 0.000000e+00 739.0
50 TraesCS3B01G581100 chr6B 98.473 131 2 0 5323 5453 453313135 453313005 1.180000e-56 231.0
51 TraesCS3B01G581100 chr7D 98.473 131 2 0 5323 5453 332274800 332274930 1.180000e-56 231.0
52 TraesCS3B01G581100 chr2D 98.473 131 2 0 5323 5453 115999667 115999537 1.180000e-56 231.0
53 TraesCS3B01G581100 chr5D 97.727 132 3 0 5322 5453 254616919 254617050 1.530000e-55 228.0
54 TraesCS3B01G581100 chr5B 92.857 56 3 1 169 224 705454532 705454586 4.530000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G581100 chr3B 809691073 809696525 5452 True 10070.00 10070 100.000000 1 5453 1 chr3B.!!$R2 5452
1 TraesCS3B01G581100 chr3B 9348828 9352356 3528 True 6096.00 6096 97.847000 1794 5322 1 chr3B.!!$R1 3528
2 TraesCS3B01G581100 chr3D 555283131 555291069 7938 False 1847.75 4865 95.143250 73 5322 4 chr3D.!!$F2 5249
3 TraesCS3B01G581100 chr6D 315863057 315868349 5292 True 3899.00 4800 96.108500 215 5324 2 chr6D.!!$R1 5109
4 TraesCS3B01G581100 chr7A 372241039 372246805 5766 True 1651.60 4717 93.459000 1 5331 5 chr7A.!!$R1 5330
5 TraesCS3B01G581100 chr7A 714011177 714012166 989 False 403.55 721 94.193500 1 730 2 chr7A.!!$F2 729
6 TraesCS3B01G581100 chr3A 160368039 160369551 1512 False 2351.00 2351 94.779000 3792 5298 1 chr3A.!!$F1 1506
7 TraesCS3B01G581100 chr3A 160386919 160392555 5636 False 2023.75 4662 96.017000 1 5299 4 chr3A.!!$F2 5298
8 TraesCS3B01G581100 chr4D 157625853 157631420 5567 False 2387.00 4170 91.650667 73 5322 3 chr4D.!!$F1 5249
9 TraesCS3B01G581100 chr1B 563493932 563499413 5481 False 3255.00 3880 90.120000 100 5322 2 chr1B.!!$F3 5222
10 TraesCS3B01G581100 chr1B 596958523 596960122 1599 True 2728.00 2728 97.438000 3073 4672 1 chr1B.!!$R2 1599
11 TraesCS3B01G581100 chr1B 646707857 646709495 1638 False 2436.00 2436 93.541000 285 1920 1 chr1B.!!$F2 1635
12 TraesCS3B01G581100 chr1B 646716969 646719059 2090 False 1176.50 2026 91.044500 2829 4665 2 chr1B.!!$F4 1836
13 TraesCS3B01G581100 chr7B 64337533 64339550 2017 True 3522.00 3522 98.167000 3305 5322 1 chr7B.!!$R1 2017
14 TraesCS3B01G581100 chr7B 707238538 707244058 5520 False 1749.25 3260 93.081500 1 5323 4 chr7B.!!$F1 5322
15 TraesCS3B01G581100 chr5A 17079876 17085354 5478 False 2582.00 3332 96.675000 223 5322 3 chr5A.!!$F1 5099
16 TraesCS3B01G581100 chr4B 366672690 366674847 2157 True 2289.00 2289 86.150000 3178 5322 1 chr4B.!!$R1 2144
17 TraesCS3B01G581100 chr1A 139173747 139175063 1316 False 683.00 1094 89.392000 2829 3934 2 chr1A.!!$F1 1105
18 TraesCS3B01G581100 chr1D 33761133 33761776 643 False 815.00 815 89.596000 2165 2804 1 chr1D.!!$F1 639
19 TraesCS3B01G581100 chr6B 430914936 430915683 747 False 739.00 739 84.667000 2062 2804 1 chr6B.!!$F1 742

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
70 71 0.175073 ATCGAACCCTAGAACACGCC 59.825 55.000 0.00 0.0 0.00 5.68 F
119 120 0.250234 CATCTCTTCCACCGCCAAGA 59.750 55.000 0.00 0.0 0.00 3.02 F
132 133 1.009389 GCCAAGAACGACTGTCCTCG 61.009 60.000 1.55 0.0 39.68 4.63 F
231 684 1.447314 CGAACCCTAGAACACGCCC 60.447 63.158 0.00 0.0 0.00 6.13 F
234 687 1.885163 AACCCTAGAACACGCCCTCG 61.885 60.000 0.00 0.0 42.43 4.63 F
1640 2789 2.095718 GCCTGAAGCTAAAGAAACCGTG 60.096 50.000 0.00 0.0 38.99 4.94 F
3385 5346 1.896660 GTTCGGTGCTTTGGGCTCA 60.897 57.895 0.00 0.0 42.39 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1640 2789 0.885196 TGCGGTTATCAAAGTTGGGC 59.115 50.000 0.00 0.00 0.00 5.36 R
2170 3324 0.827507 TGTGGCCCTTCAAAGAAGGC 60.828 55.000 18.15 13.62 44.99 4.35 R
2230 3386 1.283321 ACTGATCCTTTCCAGGCCTTC 59.717 52.381 0.00 0.00 40.58 3.46 R
3231 5192 4.038042 TCATGAAAACAATTGCCGGTTACA 59.962 37.500 5.05 0.00 0.00 2.41 R
3385 5346 6.325028 TGAGCAGCAGAGGTTAGATATAGTTT 59.675 38.462 0.00 0.00 0.00 2.66 R
3681 5655 3.547746 TCGGTGTAGCCTTTCTTTTTGT 58.452 40.909 0.00 0.00 34.25 2.83 R
5362 9514 0.249615 ATGAGATCACGGGCATGACG 60.250 55.000 0.00 2.26 37.36 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.722700 CCCCCACTGTCGGCCAAG 62.723 72.222 2.24 0.00 0.00 3.61
24 25 3.636231 CCCCACTGTCGGCCAAGA 61.636 66.667 2.24 0.00 0.00 3.02
25 26 2.358737 CCCACTGTCGGCCAAGAC 60.359 66.667 2.24 3.27 41.30 3.01
26 27 2.358737 CCACTGTCGGCCAAGACC 60.359 66.667 2.24 0.00 40.26 3.85
27 28 2.358737 CACTGTCGGCCAAGACCC 60.359 66.667 2.24 0.00 40.26 4.46
28 29 3.637273 ACTGTCGGCCAAGACCCC 61.637 66.667 2.24 0.00 40.26 4.95
29 30 4.410400 CTGTCGGCCAAGACCCCC 62.410 72.222 2.24 0.00 40.26 5.40
30 31 4.974438 TGTCGGCCAAGACCCCCT 62.974 66.667 2.24 0.00 40.26 4.79
31 32 4.097361 GTCGGCCAAGACCCCCTC 62.097 72.222 2.24 0.00 35.22 4.30
34 35 3.412408 GGCCAAGACCCCCTCCTC 61.412 72.222 0.00 0.00 0.00 3.71
35 36 3.412408 GCCAAGACCCCCTCCTCC 61.412 72.222 0.00 0.00 0.00 4.30
36 37 2.692741 CCAAGACCCCCTCCTCCC 60.693 72.222 0.00 0.00 0.00 4.30
37 38 2.692741 CAAGACCCCCTCCTCCCC 60.693 72.222 0.00 0.00 0.00 4.81
38 39 3.216371 AAGACCCCCTCCTCCCCA 61.216 66.667 0.00 0.00 0.00 4.96
39 40 3.581141 AAGACCCCCTCCTCCCCAC 62.581 68.421 0.00 0.00 0.00 4.61
42 43 4.455137 CCCCCTCCTCCCCACCAT 62.455 72.222 0.00 0.00 0.00 3.55
43 44 2.774351 CCCCTCCTCCCCACCATC 60.774 72.222 0.00 0.00 0.00 3.51
44 45 2.774351 CCCTCCTCCCCACCATCC 60.774 72.222 0.00 0.00 0.00 3.51
45 46 3.164269 CCTCCTCCCCACCATCCG 61.164 72.222 0.00 0.00 0.00 4.18
46 47 3.866582 CTCCTCCCCACCATCCGC 61.867 72.222 0.00 0.00 0.00 5.54
49 50 3.866582 CTCCCCACCATCCGCCTC 61.867 72.222 0.00 0.00 0.00 4.70
52 53 3.492353 CCCACCATCCGCCTCCAT 61.492 66.667 0.00 0.00 0.00 3.41
53 54 2.111878 CCACCATCCGCCTCCATC 59.888 66.667 0.00 0.00 0.00 3.51
54 55 2.280389 CACCATCCGCCTCCATCG 60.280 66.667 0.00 0.00 0.00 3.84
55 56 2.443952 ACCATCCGCCTCCATCGA 60.444 61.111 0.00 0.00 0.00 3.59
56 57 2.063979 ACCATCCGCCTCCATCGAA 61.064 57.895 0.00 0.00 0.00 3.71
57 58 1.595382 CCATCCGCCTCCATCGAAC 60.595 63.158 0.00 0.00 0.00 3.95
58 59 1.595382 CATCCGCCTCCATCGAACC 60.595 63.158 0.00 0.00 0.00 3.62
59 60 2.808206 ATCCGCCTCCATCGAACCC 61.808 63.158 0.00 0.00 0.00 4.11
60 61 3.470888 CCGCCTCCATCGAACCCT 61.471 66.667 0.00 0.00 0.00 4.34
61 62 2.131709 CCGCCTCCATCGAACCCTA 61.132 63.158 0.00 0.00 0.00 3.53
62 63 1.364171 CGCCTCCATCGAACCCTAG 59.636 63.158 0.00 0.00 0.00 3.02
63 64 1.107538 CGCCTCCATCGAACCCTAGA 61.108 60.000 0.00 0.00 0.00 2.43
64 65 1.120530 GCCTCCATCGAACCCTAGAA 58.879 55.000 0.00 0.00 0.00 2.10
65 66 1.202545 GCCTCCATCGAACCCTAGAAC 60.203 57.143 0.00 0.00 0.00 3.01
66 67 2.108168 CCTCCATCGAACCCTAGAACA 58.892 52.381 0.00 0.00 0.00 3.18
67 68 2.159085 CCTCCATCGAACCCTAGAACAC 60.159 54.545 0.00 0.00 0.00 3.32
68 69 1.475280 TCCATCGAACCCTAGAACACG 59.525 52.381 0.00 0.00 0.00 4.49
69 70 1.278238 CATCGAACCCTAGAACACGC 58.722 55.000 0.00 0.00 0.00 5.34
70 71 0.175073 ATCGAACCCTAGAACACGCC 59.825 55.000 0.00 0.00 0.00 5.68
71 72 1.447314 CGAACCCTAGAACACGCCC 60.447 63.158 0.00 0.00 0.00 6.13
86 87 2.122729 CCCTCACCTCCTCCACCA 59.877 66.667 0.00 0.00 0.00 4.17
119 120 0.250234 CATCTCTTCCACCGCCAAGA 59.750 55.000 0.00 0.00 0.00 3.02
132 133 1.009389 GCCAAGAACGACTGTCCTCG 61.009 60.000 1.55 0.00 39.68 4.63
231 684 1.447314 CGAACCCTAGAACACGCCC 60.447 63.158 0.00 0.00 0.00 6.13
234 687 1.885163 AACCCTAGAACACGCCCTCG 61.885 60.000 0.00 0.00 42.43 4.63
319 1129 3.330720 CGGCCAAGACTCCCCCTT 61.331 66.667 2.24 0.00 0.00 3.95
339 1149 4.148825 CCCTCACCTTCCGCTCCG 62.149 72.222 0.00 0.00 0.00 4.63
454 1354 9.793252 CCCATGACTTTAATATTCTCTGTTTTG 57.207 33.333 0.00 0.00 0.00 2.44
455 1355 9.294030 CCATGACTTTAATATTCTCTGTTTTGC 57.706 33.333 0.00 0.00 0.00 3.68
517 1440 2.841442 ACTGCTAGTGTTCTGGTTCC 57.159 50.000 0.00 0.00 0.00 3.62
528 1451 7.549147 AGTGTTCTGGTTCCAGTAAATACTA 57.451 36.000 17.00 0.00 34.13 1.82
558 1481 4.396166 CCAAATCGATAGTGCTTCTGGTTT 59.604 41.667 0.00 0.00 37.40 3.27
1167 2315 3.362706 AGCTGAGTACCATCCTAACGAA 58.637 45.455 0.00 0.00 0.00 3.85
1380 2529 5.452356 CCATGTTTTCATTTCTATCAGGGGC 60.452 44.000 0.00 0.00 38.64 5.80
1600 2749 3.023946 TCAAACACCAATTGCAATCCG 57.976 42.857 13.38 8.23 0.00 4.18
1629 2778 2.104792 ACTGTTTCTGTGCCTGAAGCTA 59.895 45.455 0.00 0.00 44.23 3.32
1640 2789 2.095718 GCCTGAAGCTAAAGAAACCGTG 60.096 50.000 0.00 0.00 38.99 4.94
2013 3164 6.367695 GTGGTGCTTTTTGTTAAACTGAACTT 59.632 34.615 0.00 0.00 0.00 2.66
2036 3187 9.084533 ACTTATAATTGGTGGAGCTTAAAACAA 57.915 29.630 0.00 0.00 0.00 2.83
2772 4138 2.845659 TGAAAGCTAGAAGGATCCCCA 58.154 47.619 8.55 0.00 33.88 4.96
3153 5114 3.470645 AGTTTCACCACACTACTGGTC 57.529 47.619 0.00 0.00 43.15 4.02
3231 5192 5.278463 GGATGTGCAAACAGTTTATGTGACT 60.278 40.000 0.00 0.00 43.00 3.41
3385 5346 1.896660 GTTCGGTGCTTTGGGCTCA 60.897 57.895 0.00 0.00 42.39 4.26
3410 5371 5.389520 ACTATATCTAACCTCTGCTGCTCA 58.610 41.667 0.00 0.00 0.00 4.26
3520 5490 7.315142 ACATGTCTTTTGCACTTAATGGTATG 58.685 34.615 0.00 0.00 0.00 2.39
3681 5655 2.158827 TCAAAGAGTGCCACTACAGCAA 60.159 45.455 0.00 0.00 43.02 3.91
5026 9178 1.386533 CCCAGATGAAGCCACATCAC 58.613 55.000 18.47 0.00 46.11 3.06
5098 9250 0.824595 TCTCTGTCACCGAAACCCGA 60.825 55.000 0.00 0.00 41.76 5.14
5168 9320 4.402474 AGATACCGTCATGAATCTGTGACA 59.598 41.667 15.58 0.00 43.74 3.58
5324 9476 7.335422 CAGATAAGCAGGTTTCTTGTAGTGAAT 59.665 37.037 0.00 0.00 0.00 2.57
5325 9477 8.540388 AGATAAGCAGGTTTCTTGTAGTGAATA 58.460 33.333 0.00 0.00 0.00 1.75
5326 9478 9.331282 GATAAGCAGGTTTCTTGTAGTGAATAT 57.669 33.333 0.00 0.00 0.00 1.28
5329 9481 8.894768 AGCAGGTTTCTTGTAGTGAATATATC 57.105 34.615 0.00 0.00 0.00 1.63
5330 9482 8.486210 AGCAGGTTTCTTGTAGTGAATATATCA 58.514 33.333 0.00 0.00 35.05 2.15
5331 9483 9.109393 GCAGGTTTCTTGTAGTGAATATATCAA 57.891 33.333 0.00 0.00 40.50 2.57
5347 9499 9.575783 GAATATATCAATCTTTACCTCTCGACC 57.424 37.037 0.00 0.00 0.00 4.79
5348 9500 6.978674 ATATCAATCTTTACCTCTCGACCA 57.021 37.500 0.00 0.00 0.00 4.02
5349 9501 5.878406 ATCAATCTTTACCTCTCGACCAT 57.122 39.130 0.00 0.00 0.00 3.55
5350 9502 5.677319 TCAATCTTTACCTCTCGACCATT 57.323 39.130 0.00 0.00 0.00 3.16
5351 9503 6.049955 TCAATCTTTACCTCTCGACCATTT 57.950 37.500 0.00 0.00 0.00 2.32
5352 9504 6.106673 TCAATCTTTACCTCTCGACCATTTC 58.893 40.000 0.00 0.00 0.00 2.17
5371 9523 1.439644 GAGACTCCTCGTCATGCCC 59.560 63.158 0.00 0.00 45.32 5.36
5372 9524 2.105128 GACTCCTCGTCATGCCCG 59.895 66.667 0.00 0.00 42.37 6.13
5373 9525 2.680352 ACTCCTCGTCATGCCCGT 60.680 61.111 4.83 0.00 0.00 5.28
5374 9526 2.202797 CTCCTCGTCATGCCCGTG 60.203 66.667 4.83 2.98 0.00 4.94
5375 9527 2.678580 TCCTCGTCATGCCCGTGA 60.679 61.111 7.83 3.22 0.00 4.35
5376 9528 2.021068 CTCCTCGTCATGCCCGTGAT 62.021 60.000 7.83 0.00 0.00 3.06
5377 9529 1.592669 CCTCGTCATGCCCGTGATC 60.593 63.158 7.83 0.00 0.00 2.92
5378 9530 1.439228 CTCGTCATGCCCGTGATCT 59.561 57.895 0.00 0.00 0.00 2.75
5379 9531 0.596083 CTCGTCATGCCCGTGATCTC 60.596 60.000 0.00 0.00 0.00 2.75
5380 9532 1.141665 CGTCATGCCCGTGATCTCA 59.858 57.895 0.00 0.00 0.00 3.27
5381 9533 0.249615 CGTCATGCCCGTGATCTCAT 60.250 55.000 0.00 0.00 0.00 2.90
5382 9534 1.506493 GTCATGCCCGTGATCTCATC 58.494 55.000 0.00 0.00 0.00 2.92
5383 9535 0.394192 TCATGCCCGTGATCTCATCC 59.606 55.000 0.00 0.00 0.00 3.51
5384 9536 0.947660 CATGCCCGTGATCTCATCCG 60.948 60.000 0.00 0.00 0.00 4.18
5385 9537 2.029666 GCCCGTGATCTCATCCGG 59.970 66.667 0.00 0.00 40.49 5.14
5387 9539 3.856309 CCGTGATCTCATCCGGGA 58.144 61.111 0.00 0.00 38.56 5.14
5388 9540 1.364171 CCGTGATCTCATCCGGGAC 59.636 63.158 0.00 0.00 38.56 4.46
5389 9541 1.109920 CCGTGATCTCATCCGGGACT 61.110 60.000 0.00 0.00 38.56 3.85
5390 9542 0.312416 CGTGATCTCATCCGGGACTC 59.688 60.000 0.00 0.00 0.00 3.36
5391 9543 1.698506 GTGATCTCATCCGGGACTCT 58.301 55.000 0.00 0.00 0.00 3.24
5392 9544 1.339610 GTGATCTCATCCGGGACTCTG 59.660 57.143 0.00 0.00 0.00 3.35
5393 9545 1.215423 TGATCTCATCCGGGACTCTGA 59.785 52.381 0.00 0.00 0.00 3.27
5394 9546 2.311463 GATCTCATCCGGGACTCTGAA 58.689 52.381 0.00 0.00 0.00 3.02
5395 9547 1.475403 TCTCATCCGGGACTCTGAAC 58.525 55.000 0.00 0.00 0.00 3.18
5396 9548 1.186200 CTCATCCGGGACTCTGAACA 58.814 55.000 0.00 0.00 0.00 3.18
5397 9549 1.550524 CTCATCCGGGACTCTGAACAA 59.449 52.381 0.00 0.00 0.00 2.83
5398 9550 1.974957 TCATCCGGGACTCTGAACAAA 59.025 47.619 0.00 0.00 0.00 2.83
5399 9551 2.076863 CATCCGGGACTCTGAACAAAC 58.923 52.381 0.00 0.00 0.00 2.93
5400 9552 1.420430 TCCGGGACTCTGAACAAACT 58.580 50.000 0.00 0.00 0.00 2.66
5401 9553 1.766496 TCCGGGACTCTGAACAAACTT 59.234 47.619 0.00 0.00 0.00 2.66
5402 9554 2.143925 CCGGGACTCTGAACAAACTTC 58.856 52.381 0.00 0.00 0.00 3.01
5403 9555 1.792949 CGGGACTCTGAACAAACTTCG 59.207 52.381 0.00 0.00 0.00 3.79
5404 9556 2.143925 GGGACTCTGAACAAACTTCGG 58.856 52.381 0.00 0.00 0.00 4.30
5405 9557 2.484947 GGGACTCTGAACAAACTTCGGT 60.485 50.000 0.00 0.00 0.00 4.69
5406 9558 2.801111 GGACTCTGAACAAACTTCGGTC 59.199 50.000 0.00 0.00 0.00 4.79
5407 9559 3.454375 GACTCTGAACAAACTTCGGTCA 58.546 45.455 0.00 0.00 0.00 4.02
5408 9560 3.195661 ACTCTGAACAAACTTCGGTCAC 58.804 45.455 0.00 0.00 0.00 3.67
5409 9561 2.544267 CTCTGAACAAACTTCGGTCACC 59.456 50.000 0.00 0.00 0.00 4.02
5410 9562 2.093394 TCTGAACAAACTTCGGTCACCA 60.093 45.455 0.00 0.00 0.00 4.17
5411 9563 2.680841 CTGAACAAACTTCGGTCACCAA 59.319 45.455 0.00 0.00 0.00 3.67
5412 9564 3.082548 TGAACAAACTTCGGTCACCAAA 58.917 40.909 0.00 0.00 0.00 3.28
5413 9565 3.506455 TGAACAAACTTCGGTCACCAAAA 59.494 39.130 0.00 0.00 0.00 2.44
5414 9566 3.497297 ACAAACTTCGGTCACCAAAAC 57.503 42.857 0.00 0.00 0.00 2.43
5415 9567 2.820787 ACAAACTTCGGTCACCAAAACA 59.179 40.909 0.00 0.00 0.00 2.83
5416 9568 3.175929 CAAACTTCGGTCACCAAAACAC 58.824 45.455 0.00 0.00 0.00 3.32
5417 9569 2.116827 ACTTCGGTCACCAAAACACA 57.883 45.000 0.00 0.00 0.00 3.72
5418 9570 2.650322 ACTTCGGTCACCAAAACACAT 58.350 42.857 0.00 0.00 0.00 3.21
5419 9571 3.811083 ACTTCGGTCACCAAAACACATA 58.189 40.909 0.00 0.00 0.00 2.29
5420 9572 4.200874 ACTTCGGTCACCAAAACACATAA 58.799 39.130 0.00 0.00 0.00 1.90
5421 9573 4.035909 ACTTCGGTCACCAAAACACATAAC 59.964 41.667 0.00 0.00 0.00 1.89
5422 9574 3.811083 TCGGTCACCAAAACACATAACT 58.189 40.909 0.00 0.00 0.00 2.24
5423 9575 3.810941 TCGGTCACCAAAACACATAACTC 59.189 43.478 0.00 0.00 0.00 3.01
5424 9576 3.562141 CGGTCACCAAAACACATAACTCA 59.438 43.478 0.00 0.00 0.00 3.41
5425 9577 4.215399 CGGTCACCAAAACACATAACTCAT 59.785 41.667 0.00 0.00 0.00 2.90
5426 9578 5.410132 CGGTCACCAAAACACATAACTCATA 59.590 40.000 0.00 0.00 0.00 2.15
5427 9579 6.072948 CGGTCACCAAAACACATAACTCATAA 60.073 38.462 0.00 0.00 0.00 1.90
5428 9580 7.361713 CGGTCACCAAAACACATAACTCATAAT 60.362 37.037 0.00 0.00 0.00 1.28
5429 9581 8.952278 GGTCACCAAAACACATAACTCATAATA 58.048 33.333 0.00 0.00 0.00 0.98
5430 9582 9.769093 GTCACCAAAACACATAACTCATAATAC 57.231 33.333 0.00 0.00 0.00 1.89
5431 9583 9.508642 TCACCAAAACACATAACTCATAATACA 57.491 29.630 0.00 0.00 0.00 2.29
5439 9591 9.594478 ACACATAACTCATAATACAAATCGTCA 57.406 29.630 0.00 0.00 0.00 4.35
5442 9594 9.943465 CATAACTCATAATACAAATCGTCATCG 57.057 33.333 0.00 0.00 38.55 3.84
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 4.722700 CTTGGCCGACAGTGGGGG 62.723 72.222 3.43 1.40 0.00 5.40
7 8 3.636231 TCTTGGCCGACAGTGGGG 61.636 66.667 3.43 0.00 0.00 4.96
10 11 2.358737 GGGTCTTGGCCGACAGTG 60.359 66.667 12.20 0.00 35.63 3.66
11 12 3.637273 GGGGTCTTGGCCGACAGT 61.637 66.667 12.20 0.00 35.63 3.55
12 13 4.410400 GGGGGTCTTGGCCGACAG 62.410 72.222 12.20 1.84 35.63 3.51
13 14 4.974438 AGGGGGTCTTGGCCGACA 62.974 66.667 12.20 0.00 35.63 4.35
14 15 4.097361 GAGGGGGTCTTGGCCGAC 62.097 72.222 0.00 0.00 0.00 4.79
17 18 3.412408 GAGGAGGGGGTCTTGGCC 61.412 72.222 0.00 0.00 0.00 5.36
18 19 3.412408 GGAGGAGGGGGTCTTGGC 61.412 72.222 0.00 0.00 0.00 4.52
19 20 2.692741 GGGAGGAGGGGGTCTTGG 60.693 72.222 0.00 0.00 0.00 3.61
20 21 2.692741 GGGGAGGAGGGGGTCTTG 60.693 72.222 0.00 0.00 0.00 3.02
21 22 3.216371 TGGGGAGGAGGGGGTCTT 61.216 66.667 0.00 0.00 0.00 3.01
22 23 4.026357 GTGGGGAGGAGGGGGTCT 62.026 72.222 0.00 0.00 0.00 3.85
25 26 4.455137 ATGGTGGGGAGGAGGGGG 62.455 72.222 0.00 0.00 0.00 5.40
26 27 2.774351 GATGGTGGGGAGGAGGGG 60.774 72.222 0.00 0.00 0.00 4.79
27 28 2.774351 GGATGGTGGGGAGGAGGG 60.774 72.222 0.00 0.00 0.00 4.30
28 29 3.164269 CGGATGGTGGGGAGGAGG 61.164 72.222 0.00 0.00 0.00 4.30
29 30 3.866582 GCGGATGGTGGGGAGGAG 61.867 72.222 0.00 0.00 0.00 3.69
32 33 3.866582 GAGGCGGATGGTGGGGAG 61.867 72.222 0.00 0.00 0.00 4.30
35 36 3.482232 GATGGAGGCGGATGGTGGG 62.482 68.421 0.00 0.00 0.00 4.61
36 37 2.111878 GATGGAGGCGGATGGTGG 59.888 66.667 0.00 0.00 0.00 4.61
37 38 2.280389 CGATGGAGGCGGATGGTG 60.280 66.667 0.00 0.00 0.00 4.17
38 39 2.063979 TTCGATGGAGGCGGATGGT 61.064 57.895 0.00 0.00 0.00 3.55
39 40 1.595382 GTTCGATGGAGGCGGATGG 60.595 63.158 0.00 0.00 0.00 3.51
40 41 1.595382 GGTTCGATGGAGGCGGATG 60.595 63.158 0.00 0.00 0.00 3.51
41 42 2.808206 GGGTTCGATGGAGGCGGAT 61.808 63.158 0.00 0.00 0.00 4.18
42 43 2.577020 TAGGGTTCGATGGAGGCGGA 62.577 60.000 0.00 0.00 0.00 5.54
43 44 2.088674 CTAGGGTTCGATGGAGGCGG 62.089 65.000 0.00 0.00 0.00 6.13
44 45 1.107538 TCTAGGGTTCGATGGAGGCG 61.108 60.000 0.00 0.00 0.00 5.52
45 46 1.120530 TTCTAGGGTTCGATGGAGGC 58.879 55.000 0.00 0.00 0.00 4.70
46 47 2.108168 TGTTCTAGGGTTCGATGGAGG 58.892 52.381 0.00 0.00 0.00 4.30
47 48 2.479730 CGTGTTCTAGGGTTCGATGGAG 60.480 54.545 0.00 0.00 0.00 3.86
48 49 1.475280 CGTGTTCTAGGGTTCGATGGA 59.525 52.381 0.00 0.00 0.00 3.41
49 50 1.922570 CGTGTTCTAGGGTTCGATGG 58.077 55.000 0.00 0.00 0.00 3.51
50 51 1.278238 GCGTGTTCTAGGGTTCGATG 58.722 55.000 0.00 0.00 0.00 3.84
51 52 0.175073 GGCGTGTTCTAGGGTTCGAT 59.825 55.000 0.00 0.00 0.00 3.59
52 53 1.588082 GGCGTGTTCTAGGGTTCGA 59.412 57.895 0.00 0.00 0.00 3.71
53 54 1.447314 GGGCGTGTTCTAGGGTTCG 60.447 63.158 0.00 0.00 0.00 3.95
54 55 0.108281 GAGGGCGTGTTCTAGGGTTC 60.108 60.000 0.00 0.00 0.00 3.62
55 56 0.834687 TGAGGGCGTGTTCTAGGGTT 60.835 55.000 0.00 0.00 0.00 4.11
56 57 1.229082 TGAGGGCGTGTTCTAGGGT 60.229 57.895 0.00 0.00 0.00 4.34
57 58 1.218316 GTGAGGGCGTGTTCTAGGG 59.782 63.158 0.00 0.00 0.00 3.53
58 59 1.218316 GGTGAGGGCGTGTTCTAGG 59.782 63.158 0.00 0.00 0.00 3.02
59 60 0.173708 GAGGTGAGGGCGTGTTCTAG 59.826 60.000 0.00 0.00 0.00 2.43
60 61 1.255667 GGAGGTGAGGGCGTGTTCTA 61.256 60.000 0.00 0.00 0.00 2.10
61 62 2.584391 GGAGGTGAGGGCGTGTTCT 61.584 63.158 0.00 0.00 0.00 3.01
62 63 2.047179 GGAGGTGAGGGCGTGTTC 60.047 66.667 0.00 0.00 0.00 3.18
63 64 2.526873 AGGAGGTGAGGGCGTGTT 60.527 61.111 0.00 0.00 0.00 3.32
64 65 2.997897 GAGGAGGTGAGGGCGTGT 60.998 66.667 0.00 0.00 0.00 4.49
65 66 3.775654 GGAGGAGGTGAGGGCGTG 61.776 72.222 0.00 0.00 0.00 5.34
66 67 4.316823 TGGAGGAGGTGAGGGCGT 62.317 66.667 0.00 0.00 0.00 5.68
67 68 3.775654 GTGGAGGAGGTGAGGGCG 61.776 72.222 0.00 0.00 0.00 6.13
68 69 3.403558 GGTGGAGGAGGTGAGGGC 61.404 72.222 0.00 0.00 0.00 5.19
69 70 2.122729 TGGTGGAGGAGGTGAGGG 59.877 66.667 0.00 0.00 0.00 4.30
70 71 2.294078 GGTGGTGGAGGAGGTGAGG 61.294 68.421 0.00 0.00 0.00 3.86
71 72 2.650116 CGGTGGTGGAGGAGGTGAG 61.650 68.421 0.00 0.00 0.00 3.51
102 103 0.034896 GTTCTTGGCGGTGGAAGAGA 59.965 55.000 0.00 0.00 30.03 3.10
119 120 0.241481 GAAGAGCGAGGACAGTCGTT 59.759 55.000 0.00 0.00 42.17 3.85
132 133 2.109126 GCCGTGGATGTGGAAGAGC 61.109 63.158 0.00 0.00 0.00 4.09
231 684 4.292178 GGCGATGGAGGAGGCGAG 62.292 72.222 0.00 0.00 0.00 5.03
234 687 4.292178 CTCGGCGATGGAGGAGGC 62.292 72.222 11.27 0.00 0.00 4.70
244 697 3.760035 GGGAGTCTTGCTCGGCGA 61.760 66.667 10.14 10.14 45.03 5.54
319 1129 4.332543 AGCGGAAGGTGAGGGGGA 62.333 66.667 0.00 0.00 42.35 4.81
339 1149 2.588439 GGGGTTCTAGGGTTCGGC 59.412 66.667 0.00 0.00 0.00 5.54
454 1354 8.915871 TCACTATCAATTTAAATCAAGCAAGC 57.084 30.769 0.10 0.00 0.00 4.01
517 1440 7.011950 TCGATTTGGCCATTGTAGTATTTACTG 59.988 37.037 6.09 0.00 37.10 2.74
528 1451 2.358898 GCACTATCGATTTGGCCATTGT 59.641 45.455 6.09 0.00 0.00 2.71
558 1481 3.831333 TCAAGCACTATCAATTTGGCCAA 59.169 39.130 16.05 16.05 0.00 4.52
1167 2315 3.270960 AGTCTCCTTCACTGGTATCCTCT 59.729 47.826 0.00 0.00 0.00 3.69
1380 2529 4.230657 CTGGTCTTCTTACAGTCGTTCAG 58.769 47.826 0.00 0.00 0.00 3.02
1600 2749 2.287608 GGCACAGAAACAGTTGGCTTAC 60.288 50.000 0.00 0.00 0.00 2.34
1629 2778 1.480789 AAGTTGGGCACGGTTTCTTT 58.519 45.000 0.00 0.00 0.00 2.52
1640 2789 0.885196 TGCGGTTATCAAAGTTGGGC 59.115 50.000 0.00 0.00 0.00 5.36
2170 3324 0.827507 TGTGGCCCTTCAAAGAAGGC 60.828 55.000 18.15 13.62 44.99 4.35
2230 3386 1.283321 ACTGATCCTTTCCAGGCCTTC 59.717 52.381 0.00 0.00 40.58 3.46
3231 5192 4.038042 TCATGAAAACAATTGCCGGTTACA 59.962 37.500 5.05 0.00 0.00 2.41
3385 5346 6.325028 TGAGCAGCAGAGGTTAGATATAGTTT 59.675 38.462 0.00 0.00 0.00 2.66
3681 5655 3.547746 TCGGTGTAGCCTTTCTTTTTGT 58.452 40.909 0.00 0.00 34.25 2.83
5129 9281 3.130516 GGTATCTGACCGTCACTGATCAA 59.869 47.826 6.55 0.00 38.87 2.57
5168 9320 2.028112 TCCGTGACAGAAATGCTTAGCT 60.028 45.455 5.60 0.00 0.00 3.32
5324 9476 8.651589 ATGGTCGAGAGGTAAAGATTGATATA 57.348 34.615 0.00 0.00 0.00 0.86
5325 9477 6.978674 TGGTCGAGAGGTAAAGATTGATAT 57.021 37.500 0.00 0.00 0.00 1.63
5326 9478 6.978674 ATGGTCGAGAGGTAAAGATTGATA 57.021 37.500 0.00 0.00 0.00 2.15
5328 9480 5.677319 AATGGTCGAGAGGTAAAGATTGA 57.323 39.130 0.00 0.00 0.00 2.57
5329 9481 6.351327 GAAATGGTCGAGAGGTAAAGATTG 57.649 41.667 0.00 0.00 0.00 2.67
5356 9508 2.680352 ACGGGCATGACGAGGAGT 60.680 61.111 15.69 0.00 34.93 3.85
5357 9509 2.021068 ATCACGGGCATGACGAGGAG 62.021 60.000 15.69 0.16 34.93 3.69
5358 9510 2.016393 GATCACGGGCATGACGAGGA 62.016 60.000 15.69 12.40 34.93 3.71
5359 9511 1.592669 GATCACGGGCATGACGAGG 60.593 63.158 15.69 8.26 34.93 4.63
5360 9512 0.596083 GAGATCACGGGCATGACGAG 60.596 60.000 15.69 8.86 34.93 4.18
5361 9513 1.319614 TGAGATCACGGGCATGACGA 61.320 55.000 15.69 0.00 34.93 4.20
5362 9514 0.249615 ATGAGATCACGGGCATGACG 60.250 55.000 0.00 2.26 37.36 4.35
5363 9515 1.506493 GATGAGATCACGGGCATGAC 58.494 55.000 0.00 0.00 0.00 3.06
5364 9516 0.394192 GGATGAGATCACGGGCATGA 59.606 55.000 0.00 0.00 0.00 3.07
5365 9517 0.947660 CGGATGAGATCACGGGCATG 60.948 60.000 0.00 0.00 0.00 4.06
5366 9518 1.368950 CGGATGAGATCACGGGCAT 59.631 57.895 0.00 0.00 0.00 4.40
5367 9519 2.796193 CCGGATGAGATCACGGGCA 61.796 63.158 0.00 0.00 38.56 5.36
5368 9520 2.029666 CCGGATGAGATCACGGGC 59.970 66.667 0.00 0.00 38.56 6.13
5370 9522 1.109920 AGTCCCGGATGAGATCACGG 61.110 60.000 0.73 5.20 40.49 4.94
5371 9523 0.312416 GAGTCCCGGATGAGATCACG 59.688 60.000 0.73 0.00 0.00 4.35
5372 9524 1.339610 CAGAGTCCCGGATGAGATCAC 59.660 57.143 0.73 0.00 0.00 3.06
5373 9525 1.215423 TCAGAGTCCCGGATGAGATCA 59.785 52.381 0.73 0.00 0.00 2.92
5374 9526 1.988293 TCAGAGTCCCGGATGAGATC 58.012 55.000 0.73 0.00 0.00 2.75
5375 9527 2.035632 GTTCAGAGTCCCGGATGAGAT 58.964 52.381 0.73 0.00 0.00 2.75
5376 9528 1.272480 TGTTCAGAGTCCCGGATGAGA 60.272 52.381 0.73 0.00 0.00 3.27
5377 9529 1.186200 TGTTCAGAGTCCCGGATGAG 58.814 55.000 0.73 0.00 0.00 2.90
5378 9530 1.639722 TTGTTCAGAGTCCCGGATGA 58.360 50.000 0.73 0.00 0.00 2.92
5379 9531 2.076863 GTTTGTTCAGAGTCCCGGATG 58.923 52.381 0.73 0.00 0.00 3.51
5380 9532 1.978580 AGTTTGTTCAGAGTCCCGGAT 59.021 47.619 0.73 0.00 0.00 4.18
5381 9533 1.420430 AGTTTGTTCAGAGTCCCGGA 58.580 50.000 0.73 0.00 0.00 5.14
5382 9534 2.143925 GAAGTTTGTTCAGAGTCCCGG 58.856 52.381 0.00 0.00 0.00 5.73
5383 9535 1.792949 CGAAGTTTGTTCAGAGTCCCG 59.207 52.381 0.00 0.00 0.00 5.14
5384 9536 2.143925 CCGAAGTTTGTTCAGAGTCCC 58.856 52.381 0.00 0.00 0.00 4.46
5385 9537 2.801111 GACCGAAGTTTGTTCAGAGTCC 59.199 50.000 0.00 0.00 0.00 3.85
5386 9538 3.245519 GTGACCGAAGTTTGTTCAGAGTC 59.754 47.826 0.00 0.00 0.00 3.36
5387 9539 3.195661 GTGACCGAAGTTTGTTCAGAGT 58.804 45.455 0.00 0.00 0.00 3.24
5388 9540 2.544267 GGTGACCGAAGTTTGTTCAGAG 59.456 50.000 0.00 0.00 0.00 3.35
5389 9541 2.093394 TGGTGACCGAAGTTTGTTCAGA 60.093 45.455 0.00 0.00 0.00 3.27
5390 9542 2.285083 TGGTGACCGAAGTTTGTTCAG 58.715 47.619 0.00 0.00 0.00 3.02
5391 9543 2.404923 TGGTGACCGAAGTTTGTTCA 57.595 45.000 0.00 0.00 0.00 3.18
5392 9544 3.768468 TTTGGTGACCGAAGTTTGTTC 57.232 42.857 0.00 0.00 0.00 3.18
5393 9545 3.256136 TGTTTTGGTGACCGAAGTTTGTT 59.744 39.130 4.20 0.00 0.00 2.83
5394 9546 2.820787 TGTTTTGGTGACCGAAGTTTGT 59.179 40.909 4.20 0.00 0.00 2.83
5395 9547 3.175929 GTGTTTTGGTGACCGAAGTTTG 58.824 45.455 4.20 0.00 0.00 2.93
5396 9548 2.820787 TGTGTTTTGGTGACCGAAGTTT 59.179 40.909 4.20 0.00 0.00 2.66
5397 9549 2.438411 TGTGTTTTGGTGACCGAAGTT 58.562 42.857 4.20 0.00 0.00 2.66
5398 9550 2.116827 TGTGTTTTGGTGACCGAAGT 57.883 45.000 4.20 0.00 0.00 3.01
5399 9551 4.274950 AGTTATGTGTTTTGGTGACCGAAG 59.725 41.667 4.20 0.00 0.00 3.79
5400 9552 4.200874 AGTTATGTGTTTTGGTGACCGAA 58.799 39.130 0.00 0.00 0.00 4.30
5401 9553 3.810941 GAGTTATGTGTTTTGGTGACCGA 59.189 43.478 0.00 0.00 0.00 4.69
5402 9554 3.562141 TGAGTTATGTGTTTTGGTGACCG 59.438 43.478 0.00 0.00 0.00 4.79
5403 9555 5.705609 ATGAGTTATGTGTTTTGGTGACC 57.294 39.130 0.00 0.00 0.00 4.02
5404 9556 9.769093 GTATTATGAGTTATGTGTTTTGGTGAC 57.231 33.333 0.00 0.00 0.00 3.67
5405 9557 9.508642 TGTATTATGAGTTATGTGTTTTGGTGA 57.491 29.630 0.00 0.00 0.00 4.02
5413 9565 9.594478 TGACGATTTGTATTATGAGTTATGTGT 57.406 29.630 0.00 0.00 0.00 3.72
5416 9568 9.943465 CGATGACGATTTGTATTATGAGTTATG 57.057 33.333 0.00 0.00 42.66 1.90
5417 9569 9.908152 TCGATGACGATTTGTATTATGAGTTAT 57.092 29.630 0.00 0.00 43.81 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.