Multiple sequence alignment - TraesCS3B01G581000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G581000 chr3B 100.000 2543 0 0 1 2543 809641081 809638539 0.000000e+00 4697.0
1 TraesCS3B01G581000 chr3B 89.040 1323 115 6 278 1576 788944094 788942778 0.000000e+00 1613.0
2 TraesCS3B01G581000 chr3B 88.956 1322 116 6 278 1575 788992347 788991032 0.000000e+00 1605.0
3 TraesCS3B01G581000 chr1D 86.319 1323 155 12 278 1576 211300518 211301838 0.000000e+00 1417.0
4 TraesCS3B01G581000 chr1D 88.693 283 29 3 2028 2308 444746656 444746937 2.420000e-90 342.0
5 TraesCS3B01G581000 chr7B 97.236 796 21 1 504 1299 677360893 677361687 0.000000e+00 1347.0
6 TraesCS3B01G581000 chr7B 96.078 153 5 1 1 152 652997936 652998088 5.430000e-62 248.0
7 TraesCS3B01G581000 chr7B 82.741 197 34 0 1379 1575 526394927 526395123 2.600000e-40 176.0
8 TraesCS3B01G581000 chr2A 86.545 602 79 2 1943 2543 576535 577135 0.000000e+00 662.0
9 TraesCS3B01G581000 chr2A 86.853 464 52 6 2084 2543 459162043 459161585 6.280000e-141 510.0
10 TraesCS3B01G581000 chr2D 86.248 589 54 11 1012 1576 263502688 263503273 4.650000e-172 614.0
11 TraesCS3B01G581000 chr2D 83.542 480 68 8 2069 2541 636583568 636584043 3.000000e-119 438.0
12 TraesCS3B01G581000 chr2D 83.246 191 27 4 1397 1584 585466977 585466789 1.210000e-38 171.0
13 TraesCS3B01G581000 chr7A 87.526 481 53 7 2068 2543 75060717 75061195 1.330000e-152 549.0
14 TraesCS3B01G581000 chr7A 83.891 478 67 8 2074 2543 645715596 645716071 4.990000e-122 448.0
15 TraesCS3B01G581000 chr7A 92.342 222 13 3 1722 1943 78710380 78710597 1.900000e-81 313.0
16 TraesCS3B01G581000 chr7A 83.102 361 42 11 1936 2291 731040489 731040835 6.830000e-81 311.0
17 TraesCS3B01G581000 chr7A 91.630 227 13 2 1722 1943 85651585 85651360 2.460000e-80 309.0
18 TraesCS3B01G581000 chr7A 85.512 283 35 5 1936 2214 611242121 611242401 8.900000e-75 291.0
19 TraesCS3B01G581000 chr7A 89.862 217 19 3 1936 2150 85651334 85651119 2.490000e-70 276.0
20 TraesCS3B01G581000 chr7A 77.406 239 32 11 1722 1943 730602732 730602965 3.440000e-24 122.0
21 TraesCS3B01G581000 chr5B 82.979 611 91 10 1940 2543 506742958 506743562 8.000000e-150 540.0
22 TraesCS3B01G581000 chr5B 82.680 612 92 11 1940 2543 506709750 506710355 4.820000e-147 531.0
23 TraesCS3B01G581000 chr5B 88.889 369 34 7 1576 1943 506742566 506742928 4.990000e-122 448.0
24 TraesCS3B01G581000 chr5B 88.618 369 34 7 1576 1943 506709359 506709720 2.320000e-120 442.0
25 TraesCS3B01G581000 chr5B 96.689 151 4 1 3 152 656150472 656150622 1.510000e-62 250.0
26 TraesCS3B01G581000 chr4B 86.966 468 50 7 2081 2543 66601502 66601963 1.350000e-142 516.0
27 TraesCS3B01G581000 chr4B 96.732 153 4 1 1 152 37518259 37518107 1.170000e-63 254.0
28 TraesCS3B01G581000 chr4B 96.667 150 4 1 4 152 662512575 662512426 5.430000e-62 248.0
29 TraesCS3B01G581000 chr2B 85.965 456 33 15 1722 2147 764880666 764881120 2.310000e-125 459.0
30 TraesCS3B01G581000 chr2B 96.078 153 5 1 1 152 602157177 602157329 5.430000e-62 248.0
31 TraesCS3B01G581000 chr1A 85.480 427 57 4 2114 2537 82143057 82142633 8.350000e-120 440.0
32 TraesCS3B01G581000 chr1B 95.062 243 12 0 1333 1575 366288613 366288855 1.430000e-102 383.0
33 TraesCS3B01G581000 chr1B 96.078 153 5 1 1 152 558476827 558476979 5.430000e-62 248.0
34 TraesCS3B01G581000 chr1B 96.078 153 5 1 1 152 629460868 629460716 5.430000e-62 248.0
35 TraesCS3B01G581000 chr1B 96.078 153 5 1 1 152 672358323 672358475 5.430000e-62 248.0
36 TraesCS3B01G581000 chr1B 97.619 42 1 0 1294 1335 366288550 366288591 3.510000e-09 73.1
37 TraesCS3B01G581000 chr6A 93.243 222 14 1 1722 1943 46771803 46771583 2.440000e-85 326.0
38 TraesCS3B01G581000 chr4A 92.991 214 15 0 1934 2147 427499980 427500193 1.900000e-81 313.0
39 TraesCS3B01G581000 chr4A 96.078 153 5 1 1 152 730650186 730650338 5.430000e-62 248.0
40 TraesCS3B01G581000 chr4A 83.333 192 32 0 1385 1576 674441435 674441244 7.230000e-41 178.0
41 TraesCS3B01G581000 chr3A 85.612 278 32 6 1943 2214 42359483 42359758 4.140000e-73 285.0
42 TraesCS3B01G581000 chr5A 82.051 195 35 0 1385 1579 24361187 24360993 1.560000e-37 167.0
43 TraesCS3B01G581000 chr7D 79.518 166 25 6 1658 1819 627235517 627235677 2.670000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G581000 chr3B 809638539 809641081 2542 True 4697.0 4697 100.000 1 2543 1 chr3B.!!$R3 2542
1 TraesCS3B01G581000 chr3B 788942778 788944094 1316 True 1613.0 1613 89.040 278 1576 1 chr3B.!!$R1 1298
2 TraesCS3B01G581000 chr3B 788991032 788992347 1315 True 1605.0 1605 88.956 278 1575 1 chr3B.!!$R2 1297
3 TraesCS3B01G581000 chr1D 211300518 211301838 1320 False 1417.0 1417 86.319 278 1576 1 chr1D.!!$F1 1298
4 TraesCS3B01G581000 chr7B 677360893 677361687 794 False 1347.0 1347 97.236 504 1299 1 chr7B.!!$F3 795
5 TraesCS3B01G581000 chr2A 576535 577135 600 False 662.0 662 86.545 1943 2543 1 chr2A.!!$F1 600
6 TraesCS3B01G581000 chr2D 263502688 263503273 585 False 614.0 614 86.248 1012 1576 1 chr2D.!!$F1 564
7 TraesCS3B01G581000 chr5B 506742566 506743562 996 False 494.0 540 85.934 1576 2543 2 chr5B.!!$F3 967
8 TraesCS3B01G581000 chr5B 506709359 506710355 996 False 486.5 531 85.649 1576 2543 2 chr5B.!!$F2 967

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
205 206 0.037232 CTCCCCGTGACCACTTCTTC 60.037 60.0 0.0 0.0 0.0 2.87 F
207 208 0.320771 CCCCGTGACCACTTCTTCAG 60.321 60.0 0.0 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1131 1132 0.616111 ATCCTCCTGAGTGTTCGCCT 60.616 55.0 0.0 0.0 0.0 5.52 R
1827 1853 1.036707 TTCCGCCCAAAAAGAAGGTG 58.963 50.0 0.0 0.0 0.0 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.708734 GTTCGTGCGTGGAACCGG 61.709 66.667 0.00 0.00 38.23 5.28
20 21 4.973055 TTCGTGCGTGGAACCGGG 62.973 66.667 6.32 0.00 0.00 5.73
25 26 4.629523 GCGTGGAACCGGGACCAA 62.630 66.667 20.50 5.59 37.94 3.67
26 27 2.111460 CGTGGAACCGGGACCAAA 59.889 61.111 20.50 0.00 37.94 3.28
27 28 1.526455 CGTGGAACCGGGACCAAAA 60.526 57.895 20.50 0.00 37.94 2.44
28 29 1.512156 CGTGGAACCGGGACCAAAAG 61.512 60.000 20.50 12.61 37.94 2.27
29 30 1.151908 TGGAACCGGGACCAAAAGG 59.848 57.895 17.42 0.00 32.93 3.11
30 31 1.152138 GGAACCGGGACCAAAAGGT 59.848 57.895 6.32 0.00 38.88 3.50
31 32 0.892358 GGAACCGGGACCAAAAGGTC 60.892 60.000 6.32 6.11 35.68 3.85
41 42 2.820197 GACCAAAAGGTCCAGATGAACC 59.180 50.000 3.27 0.00 33.21 3.62
42 43 1.812571 CCAAAAGGTCCAGATGAACCG 59.187 52.381 0.00 0.00 0.00 4.44
43 44 1.812571 CAAAAGGTCCAGATGAACCGG 59.187 52.381 0.00 0.00 0.00 5.28
44 45 0.328258 AAAGGTCCAGATGAACCGGG 59.672 55.000 6.32 0.00 0.00 5.73
45 46 0.546747 AAGGTCCAGATGAACCGGGA 60.547 55.000 6.32 0.00 0.00 5.14
46 47 4.934989 GTCCAGATGAACCGGGAC 57.065 61.111 6.32 0.00 42.60 4.46
47 48 1.221021 GTCCAGATGAACCGGGACC 59.779 63.158 6.32 0.00 43.14 4.46
48 49 2.186903 CCAGATGAACCGGGACCG 59.813 66.667 6.32 3.25 39.44 4.79
49 50 2.355986 CCAGATGAACCGGGACCGA 61.356 63.158 13.13 0.00 42.83 4.69
50 51 1.686325 CCAGATGAACCGGGACCGAT 61.686 60.000 13.13 0.03 42.83 4.18
51 52 0.530650 CAGATGAACCGGGACCGATG 60.531 60.000 13.13 0.00 42.83 3.84
52 53 1.227556 GATGAACCGGGACCGATGG 60.228 63.158 13.13 3.57 42.83 3.51
53 54 3.400599 ATGAACCGGGACCGATGGC 62.401 63.158 13.13 0.00 42.83 4.40
54 55 4.851179 GAACCGGGACCGATGGCC 62.851 72.222 13.13 0.00 42.83 5.36
70 71 2.683933 CCCACGTGGCTACCCTCT 60.684 66.667 29.75 0.00 0.00 3.69
71 72 2.291043 CCCACGTGGCTACCCTCTT 61.291 63.158 29.75 0.00 0.00 2.85
72 73 1.079127 CCACGTGGCTACCCTCTTG 60.079 63.158 24.02 0.00 0.00 3.02
73 74 1.541310 CCACGTGGCTACCCTCTTGA 61.541 60.000 24.02 0.00 0.00 3.02
74 75 0.108615 CACGTGGCTACCCTCTTGAG 60.109 60.000 7.95 0.00 0.00 3.02
75 76 0.251653 ACGTGGCTACCCTCTTGAGA 60.252 55.000 0.00 0.00 0.00 3.27
76 77 0.457851 CGTGGCTACCCTCTTGAGAG 59.542 60.000 0.93 0.93 41.71 3.20
77 78 1.562783 GTGGCTACCCTCTTGAGAGT 58.437 55.000 7.21 0.00 40.48 3.24
78 79 1.205893 GTGGCTACCCTCTTGAGAGTG 59.794 57.143 7.21 0.00 40.48 3.51
79 80 1.203187 TGGCTACCCTCTTGAGAGTGT 60.203 52.381 7.21 4.53 40.48 3.55
80 81 1.903183 GGCTACCCTCTTGAGAGTGTT 59.097 52.381 7.21 0.00 40.48 3.32
81 82 2.093921 GGCTACCCTCTTGAGAGTGTTC 60.094 54.545 7.21 0.00 40.48 3.18
82 83 2.829120 GCTACCCTCTTGAGAGTGTTCT 59.171 50.000 7.21 0.00 40.48 3.01
83 84 3.259625 GCTACCCTCTTGAGAGTGTTCTT 59.740 47.826 7.21 0.00 40.48 2.52
84 85 3.760580 ACCCTCTTGAGAGTGTTCTTG 57.239 47.619 7.21 0.00 40.48 3.02
85 86 2.370189 ACCCTCTTGAGAGTGTTCTTGG 59.630 50.000 7.21 2.31 40.48 3.61
86 87 2.370189 CCCTCTTGAGAGTGTTCTTGGT 59.630 50.000 7.21 0.00 40.48 3.67
87 88 3.397482 CCTCTTGAGAGTGTTCTTGGTG 58.603 50.000 7.21 0.00 40.48 4.17
88 89 3.070159 CCTCTTGAGAGTGTTCTTGGTGA 59.930 47.826 7.21 0.00 40.48 4.02
89 90 4.305769 CTCTTGAGAGTGTTCTTGGTGAG 58.694 47.826 0.00 0.00 37.40 3.51
90 91 3.960755 TCTTGAGAGTGTTCTTGGTGAGA 59.039 43.478 0.00 0.00 32.53 3.27
91 92 4.405680 TCTTGAGAGTGTTCTTGGTGAGAA 59.594 41.667 0.00 0.00 42.03 2.87
92 93 7.447027 CTCTTGAGAGTGTTCTTGGTGAGAAC 61.447 46.154 11.03 11.03 46.26 3.01
102 103 5.545063 TCTTGGTGAGAACATAGTTGACA 57.455 39.130 0.00 0.00 0.00 3.58
103 104 5.924356 TCTTGGTGAGAACATAGTTGACAA 58.076 37.500 0.00 0.00 0.00 3.18
104 105 5.991606 TCTTGGTGAGAACATAGTTGACAAG 59.008 40.000 0.00 0.00 34.51 3.16
105 106 4.641396 TGGTGAGAACATAGTTGACAAGG 58.359 43.478 0.00 0.00 0.00 3.61
106 107 4.346709 TGGTGAGAACATAGTTGACAAGGA 59.653 41.667 0.00 0.00 0.00 3.36
107 108 4.932200 GGTGAGAACATAGTTGACAAGGAG 59.068 45.833 0.00 0.00 0.00 3.69
108 109 4.390297 GTGAGAACATAGTTGACAAGGAGC 59.610 45.833 0.00 0.00 0.00 4.70
109 110 3.589988 AGAACATAGTTGACAAGGAGCG 58.410 45.455 0.00 0.00 0.00 5.03
110 111 3.258372 AGAACATAGTTGACAAGGAGCGA 59.742 43.478 0.00 0.00 0.00 4.93
111 112 3.678056 ACATAGTTGACAAGGAGCGAA 57.322 42.857 0.00 0.00 0.00 4.70
112 113 3.326747 ACATAGTTGACAAGGAGCGAAC 58.673 45.455 0.00 0.00 0.00 3.95
113 114 2.450609 TAGTTGACAAGGAGCGAACC 57.549 50.000 0.00 0.00 0.00 3.62
114 115 0.600255 AGTTGACAAGGAGCGAACCG 60.600 55.000 0.00 0.00 34.73 4.44
115 116 1.301401 TTGACAAGGAGCGAACCGG 60.301 57.895 0.00 0.00 34.73 5.28
116 117 2.434359 GACAAGGAGCGAACCGGG 60.434 66.667 6.32 0.00 34.73 5.73
117 118 2.920912 ACAAGGAGCGAACCGGGA 60.921 61.111 6.32 0.00 34.73 5.14
118 119 2.240162 GACAAGGAGCGAACCGGGAT 62.240 60.000 6.32 0.00 34.73 3.85
119 120 1.078426 CAAGGAGCGAACCGGGATT 60.078 57.895 6.32 0.00 34.73 3.01
120 121 0.177141 CAAGGAGCGAACCGGGATTA 59.823 55.000 6.32 0.00 34.73 1.75
121 122 0.906775 AAGGAGCGAACCGGGATTAA 59.093 50.000 6.32 0.00 34.73 1.40
122 123 1.129058 AGGAGCGAACCGGGATTAAT 58.871 50.000 6.32 0.00 34.73 1.40
123 124 1.202651 AGGAGCGAACCGGGATTAATG 60.203 52.381 6.32 0.00 34.73 1.90
124 125 1.226746 GAGCGAACCGGGATTAATGG 58.773 55.000 6.32 0.00 0.00 3.16
125 126 0.544697 AGCGAACCGGGATTAATGGT 59.455 50.000 6.32 0.00 37.68 3.55
126 127 1.764134 AGCGAACCGGGATTAATGGTA 59.236 47.619 6.32 0.00 34.11 3.25
127 128 2.370849 AGCGAACCGGGATTAATGGTAT 59.629 45.455 6.32 0.00 34.11 2.73
128 129 3.143728 GCGAACCGGGATTAATGGTATT 58.856 45.455 6.32 0.00 34.11 1.89
129 130 4.040706 AGCGAACCGGGATTAATGGTATTA 59.959 41.667 6.32 0.00 34.11 0.98
130 131 4.152938 GCGAACCGGGATTAATGGTATTAC 59.847 45.833 6.32 0.00 34.11 1.89
131 132 4.386652 CGAACCGGGATTAATGGTATTACG 59.613 45.833 6.32 0.00 34.11 3.18
132 133 5.540911 GAACCGGGATTAATGGTATTACGA 58.459 41.667 6.32 0.00 34.11 3.43
133 134 5.143376 ACCGGGATTAATGGTATTACGAG 57.857 43.478 6.32 0.00 33.25 4.18
134 135 4.020839 ACCGGGATTAATGGTATTACGAGG 60.021 45.833 6.32 0.00 33.25 4.63
135 136 4.221262 CCGGGATTAATGGTATTACGAGGA 59.779 45.833 0.00 0.00 0.00 3.71
136 137 5.166398 CGGGATTAATGGTATTACGAGGAC 58.834 45.833 0.00 0.00 0.00 3.85
137 138 5.047519 CGGGATTAATGGTATTACGAGGACT 60.048 44.000 0.00 0.00 0.00 3.85
138 139 6.151648 CGGGATTAATGGTATTACGAGGACTA 59.848 42.308 0.00 0.00 0.00 2.59
139 140 7.309377 CGGGATTAATGGTATTACGAGGACTAA 60.309 40.741 0.00 0.00 0.00 2.24
140 141 7.816513 GGGATTAATGGTATTACGAGGACTAAC 59.183 40.741 0.00 0.00 0.00 2.34
141 142 7.816513 GGATTAATGGTATTACGAGGACTAACC 59.183 40.741 0.00 0.00 39.35 2.85
142 143 7.658525 TTAATGGTATTACGAGGACTAACCA 57.341 36.000 0.00 0.00 42.04 3.67
143 144 6.742559 AATGGTATTACGAGGACTAACCAT 57.257 37.500 0.00 0.00 45.67 3.55
144 145 7.844493 AATGGTATTACGAGGACTAACCATA 57.156 36.000 4.64 0.00 43.58 2.74
145 146 7.844493 ATGGTATTACGAGGACTAACCATAA 57.156 36.000 2.36 0.00 42.80 1.90
146 147 7.281040 TGGTATTACGAGGACTAACCATAAG 57.719 40.000 0.00 0.00 42.04 1.73
147 148 7.062322 TGGTATTACGAGGACTAACCATAAGA 58.938 38.462 0.00 0.00 42.04 2.10
148 149 7.013655 TGGTATTACGAGGACTAACCATAAGAC 59.986 40.741 0.00 0.00 42.04 3.01
149 150 7.013655 GGTATTACGAGGACTAACCATAAGACA 59.986 40.741 0.00 0.00 42.04 3.41
150 151 7.598759 ATTACGAGGACTAACCATAAGACAT 57.401 36.000 0.00 0.00 42.04 3.06
151 152 5.934402 ACGAGGACTAACCATAAGACATT 57.066 39.130 0.00 0.00 42.04 2.71
152 153 5.903810 ACGAGGACTAACCATAAGACATTC 58.096 41.667 0.00 0.00 42.04 2.67
153 154 5.163437 ACGAGGACTAACCATAAGACATTCC 60.163 44.000 0.00 0.00 42.04 3.01
154 155 5.069251 CGAGGACTAACCATAAGACATTCCT 59.931 44.000 0.00 0.00 42.04 3.36
155 156 6.264744 CGAGGACTAACCATAAGACATTCCTA 59.735 42.308 0.00 0.00 42.04 2.94
156 157 7.039644 CGAGGACTAACCATAAGACATTCCTAT 60.040 40.741 0.00 0.00 42.04 2.57
157 158 8.568617 AGGACTAACCATAAGACATTCCTATT 57.431 34.615 0.00 0.00 42.04 1.73
158 159 9.004231 AGGACTAACCATAAGACATTCCTATTT 57.996 33.333 0.00 0.00 42.04 1.40
164 165 9.588096 AACCATAAGACATTCCTATTTATTCCC 57.412 33.333 0.00 0.00 0.00 3.97
165 166 7.883311 ACCATAAGACATTCCTATTTATTCCCG 59.117 37.037 0.00 0.00 0.00 5.14
166 167 7.336931 CCATAAGACATTCCTATTTATTCCCGG 59.663 40.741 0.00 0.00 0.00 5.73
167 168 6.509523 AAGACATTCCTATTTATTCCCGGA 57.490 37.500 0.73 0.00 0.00 5.14
168 169 6.509523 AGACATTCCTATTTATTCCCGGAA 57.490 37.500 0.73 1.31 38.06 4.30
169 170 6.906848 AGACATTCCTATTTATTCCCGGAAA 58.093 36.000 0.73 0.00 37.31 3.13
170 171 7.526918 AGACATTCCTATTTATTCCCGGAAAT 58.473 34.615 0.73 0.00 37.31 2.17
171 172 8.004801 AGACATTCCTATTTATTCCCGGAAATT 58.995 33.333 0.73 0.00 37.31 1.82
172 173 8.178313 ACATTCCTATTTATTCCCGGAAATTC 57.822 34.615 0.73 0.00 37.31 2.17
173 174 7.782644 ACATTCCTATTTATTCCCGGAAATTCA 59.217 33.333 0.73 0.00 37.31 2.57
174 175 8.637986 CATTCCTATTTATTCCCGGAAATTCAA 58.362 33.333 0.73 0.00 37.31 2.69
175 176 7.576861 TCCTATTTATTCCCGGAAATTCAAC 57.423 36.000 0.73 0.00 0.00 3.18
176 177 6.261381 TCCTATTTATTCCCGGAAATTCAACG 59.739 38.462 0.73 0.00 0.00 4.10
177 178 4.705337 TTTATTCCCGGAAATTCAACGG 57.295 40.909 0.73 4.09 46.79 4.44
178 179 0.815095 ATTCCCGGAAATTCAACGGC 59.185 50.000 0.73 0.00 45.93 5.68
179 180 0.537600 TTCCCGGAAATTCAACGGCA 60.538 50.000 0.73 0.00 45.93 5.69
180 181 1.211709 CCCGGAAATTCAACGGCAC 59.788 57.895 0.73 0.00 45.93 5.01
181 182 1.211709 CCGGAAATTCAACGGCACC 59.788 57.895 0.00 0.00 41.23 5.01
182 183 1.519751 CCGGAAATTCAACGGCACCA 61.520 55.000 0.00 0.00 41.23 4.17
183 184 0.312416 CGGAAATTCAACGGCACCAA 59.688 50.000 0.00 0.00 0.00 3.67
184 185 1.778334 GGAAATTCAACGGCACCAAC 58.222 50.000 0.00 0.00 0.00 3.77
185 186 1.339929 GGAAATTCAACGGCACCAACT 59.660 47.619 0.00 0.00 0.00 3.16
186 187 2.607038 GGAAATTCAACGGCACCAACTC 60.607 50.000 0.00 0.00 0.00 3.01
187 188 1.981256 AATTCAACGGCACCAACTCT 58.019 45.000 0.00 0.00 0.00 3.24
188 189 1.523758 ATTCAACGGCACCAACTCTC 58.476 50.000 0.00 0.00 0.00 3.20
189 190 0.534203 TTCAACGGCACCAACTCTCC 60.534 55.000 0.00 0.00 0.00 3.71
190 191 1.966451 CAACGGCACCAACTCTCCC 60.966 63.158 0.00 0.00 0.00 4.30
191 192 3.192103 AACGGCACCAACTCTCCCC 62.192 63.158 0.00 0.00 0.00 4.81
192 193 4.760047 CGGCACCAACTCTCCCCG 62.760 72.222 0.00 0.00 0.00 5.73
193 194 3.637273 GGCACCAACTCTCCCCGT 61.637 66.667 0.00 0.00 0.00 5.28
194 195 2.358737 GCACCAACTCTCCCCGTG 60.359 66.667 0.00 0.00 0.00 4.94
195 196 2.879233 GCACCAACTCTCCCCGTGA 61.879 63.158 0.00 0.00 0.00 4.35
196 197 1.004918 CACCAACTCTCCCCGTGAC 60.005 63.158 0.00 0.00 0.00 3.67
197 198 2.214920 ACCAACTCTCCCCGTGACC 61.215 63.158 0.00 0.00 0.00 4.02
198 199 2.214216 CCAACTCTCCCCGTGACCA 61.214 63.158 0.00 0.00 0.00 4.02
199 200 1.004918 CAACTCTCCCCGTGACCAC 60.005 63.158 0.00 0.00 0.00 4.16
200 201 1.152312 AACTCTCCCCGTGACCACT 60.152 57.895 0.00 0.00 0.00 4.00
201 202 0.763223 AACTCTCCCCGTGACCACTT 60.763 55.000 0.00 0.00 0.00 3.16
202 203 1.186267 ACTCTCCCCGTGACCACTTC 61.186 60.000 0.00 0.00 0.00 3.01
203 204 0.900647 CTCTCCCCGTGACCACTTCT 60.901 60.000 0.00 0.00 0.00 2.85
204 205 0.471211 TCTCCCCGTGACCACTTCTT 60.471 55.000 0.00 0.00 0.00 2.52
205 206 0.037232 CTCCCCGTGACCACTTCTTC 60.037 60.000 0.00 0.00 0.00 2.87
206 207 0.761323 TCCCCGTGACCACTTCTTCA 60.761 55.000 0.00 0.00 0.00 3.02
207 208 0.320771 CCCCGTGACCACTTCTTCAG 60.321 60.000 0.00 0.00 0.00 3.02
208 209 0.679505 CCCGTGACCACTTCTTCAGA 59.320 55.000 0.00 0.00 0.00 3.27
209 210 1.276421 CCCGTGACCACTTCTTCAGAT 59.724 52.381 0.00 0.00 0.00 2.90
210 211 2.341257 CCGTGACCACTTCTTCAGATG 58.659 52.381 0.00 0.00 0.00 2.90
211 212 2.341257 CGTGACCACTTCTTCAGATGG 58.659 52.381 0.00 0.00 38.26 3.51
212 213 2.704572 GTGACCACTTCTTCAGATGGG 58.295 52.381 2.26 0.00 36.47 4.00
213 214 2.039084 GTGACCACTTCTTCAGATGGGT 59.961 50.000 2.26 0.00 36.47 4.51
214 215 3.260884 GTGACCACTTCTTCAGATGGGTA 59.739 47.826 2.26 0.00 36.47 3.69
215 216 3.907474 TGACCACTTCTTCAGATGGGTAA 59.093 43.478 2.26 0.00 36.47 2.85
216 217 4.254492 GACCACTTCTTCAGATGGGTAAC 58.746 47.826 2.26 0.00 36.47 2.50
217 218 3.910627 ACCACTTCTTCAGATGGGTAACT 59.089 43.478 2.26 0.00 36.47 2.24
218 219 4.351111 ACCACTTCTTCAGATGGGTAACTT 59.649 41.667 2.26 0.00 36.47 2.66
219 220 5.163088 ACCACTTCTTCAGATGGGTAACTTT 60.163 40.000 2.26 0.00 36.47 2.66
220 221 6.043938 ACCACTTCTTCAGATGGGTAACTTTA 59.956 38.462 2.26 0.00 36.47 1.85
221 222 7.112779 CCACTTCTTCAGATGGGTAACTTTAT 58.887 38.462 0.00 0.00 0.00 1.40
222 223 7.281100 CCACTTCTTCAGATGGGTAACTTTATC 59.719 40.741 0.00 0.00 0.00 1.75
223 224 8.043710 CACTTCTTCAGATGGGTAACTTTATCT 58.956 37.037 0.00 0.00 33.94 1.98
224 225 8.606830 ACTTCTTCAGATGGGTAACTTTATCTT 58.393 33.333 0.00 0.00 32.26 2.40
230 231 9.627123 TCAGATGGGTAACTTTATCTTAAATGG 57.373 33.333 0.00 0.00 32.26 3.16
231 232 8.352942 CAGATGGGTAACTTTATCTTAAATGGC 58.647 37.037 0.00 0.00 32.26 4.40
232 233 8.058847 AGATGGGTAACTTTATCTTAAATGGCA 58.941 33.333 0.00 0.00 31.11 4.92
233 234 8.782137 ATGGGTAACTTTATCTTAAATGGCAT 57.218 30.769 0.00 0.00 0.00 4.40
234 235 8.232913 TGGGTAACTTTATCTTAAATGGCATC 57.767 34.615 0.00 0.00 0.00 3.91
235 236 7.836685 TGGGTAACTTTATCTTAAATGGCATCA 59.163 33.333 0.00 0.00 0.00 3.07
236 237 8.691797 GGGTAACTTTATCTTAAATGGCATCAA 58.308 33.333 0.00 0.00 0.00 2.57
240 241 9.995003 AACTTTATCTTAAATGGCATCAAACAA 57.005 25.926 0.00 0.00 0.00 2.83
241 242 9.423061 ACTTTATCTTAAATGGCATCAAACAAC 57.577 29.630 0.00 0.00 0.00 3.32
242 243 9.421806 CTTTATCTTAAATGGCATCAAACAACA 57.578 29.630 0.00 0.00 0.00 3.33
243 244 9.941325 TTTATCTTAAATGGCATCAAACAACAT 57.059 25.926 0.00 0.00 0.00 2.71
244 245 9.585099 TTATCTTAAATGGCATCAAACAACATC 57.415 29.630 0.00 0.00 0.00 3.06
245 246 7.230849 TCTTAAATGGCATCAAACAACATCT 57.769 32.000 0.00 0.00 0.00 2.90
246 247 7.669427 TCTTAAATGGCATCAAACAACATCTT 58.331 30.769 0.00 0.00 0.00 2.40
247 248 8.149647 TCTTAAATGGCATCAAACAACATCTTT 58.850 29.630 0.00 0.00 0.00 2.52
248 249 8.674263 TTAAATGGCATCAAACAACATCTTTT 57.326 26.923 0.00 0.00 0.00 2.27
249 250 7.571080 AAATGGCATCAAACAACATCTTTTT 57.429 28.000 0.00 0.00 0.00 1.94
310 311 2.841881 AGGAAAATCCTTACTGCCCGTA 59.158 45.455 0.00 0.00 46.91 4.02
326 327 2.028130 CCGTAGAGGTCAGATGCTCTT 58.972 52.381 0.00 0.00 34.51 2.85
334 335 5.247110 AGAGGTCAGATGCTCTTGAAAGTAA 59.753 40.000 0.00 0.00 0.00 2.24
345 346 6.425114 TGCTCTTGAAAGTAAGTGAGTTGATC 59.575 38.462 0.00 0.00 0.00 2.92
351 352 5.923733 AAGTAAGTGAGTTGATCGATCCT 57.076 39.130 22.31 13.02 0.00 3.24
376 377 1.685148 GGGAGAATGGGATGAACAGC 58.315 55.000 0.00 0.00 0.00 4.40
387 388 3.553922 GGGATGAACAGCTAATCCGAGAG 60.554 52.174 9.55 0.00 40.75 3.20
426 427 2.735823 GCGGAATGCATTCTCCAAATC 58.264 47.619 32.48 16.80 45.45 2.17
429 430 3.033184 GGAATGCATTCTCCAAATCCCA 58.967 45.455 32.48 0.00 37.00 4.37
442 443 6.012337 TCCAAATCCCACTATATCAGCAAA 57.988 37.500 0.00 0.00 0.00 3.68
453 454 8.147058 CCACTATATCAGCAAACTACAGAAGAT 58.853 37.037 0.00 0.00 0.00 2.40
469 470 2.818130 AGATTTTGTTGCGTGGCATT 57.182 40.000 0.00 0.00 38.76 3.56
1021 1022 1.078848 GCGATCCAAGCTGTGACCT 60.079 57.895 0.00 0.00 0.00 3.85
1059 1060 2.436115 GGGAAAACGGGGAGCTCG 60.436 66.667 7.83 0.00 0.00 5.03
1131 1132 7.408756 AAATGTGGATGCTGCTTTTTATCTA 57.591 32.000 0.00 0.00 0.00 1.98
1215 1216 1.334689 GCCACGGCAAAACTAACTCAC 60.335 52.381 2.36 0.00 41.49 3.51
1233 1234 2.143122 CACGTAGCTGATGTGGTTTGT 58.857 47.619 0.00 0.00 40.83 2.83
1317 1318 9.950496 AATGTGATAGTAAGGATGGACAATATC 57.050 33.333 0.00 0.00 0.00 1.63
1336 1361 7.886446 ACAATATCATTGTCATAGATGCCATGA 59.114 33.333 0.00 0.00 0.00 3.07
1337 1362 8.736244 CAATATCATTGTCATAGATGCCATGAA 58.264 33.333 0.00 0.00 34.32 2.57
1363 1388 1.127343 GCCTATTCTGGAGGAGTGCT 58.873 55.000 0.00 0.00 35.99 4.40
1366 1391 2.503356 CCTATTCTGGAGGAGTGCTTGT 59.497 50.000 0.00 0.00 35.99 3.16
1409 1435 6.024552 GAAGGTTTCCATTGAGCATTGTAA 57.975 37.500 0.00 0.00 0.00 2.41
1458 1484 0.616679 TAGCTAGGTGGGGAAGCGTT 60.617 55.000 4.27 0.00 0.00 4.84
1491 1517 1.530419 GTGGGTTGATGCACCACCA 60.530 57.895 11.44 0.00 46.90 4.17
1507 1533 8.682936 TGCACCACCAAATTTTATTGTAAATT 57.317 26.923 0.00 0.00 38.90 1.82
1508 1534 8.778358 TGCACCACCAAATTTTATTGTAAATTC 58.222 29.630 0.00 0.00 36.87 2.17
1509 1535 8.233868 GCACCACCAAATTTTATTGTAAATTCC 58.766 33.333 0.00 0.00 36.87 3.01
1522 1548 5.423704 TGTAAATTCCCTTGTGGACGATA 57.576 39.130 0.00 0.00 45.11 2.92
1653 1679 5.702622 TTTTCTATGAAGAGCGTTGATCG 57.297 39.130 0.00 0.00 43.12 3.69
1654 1680 4.371855 TTCTATGAAGAGCGTTGATCGT 57.628 40.909 0.00 0.00 42.13 3.73
1668 1694 5.726679 GCGTTGATCGTTGTATTGACTAAAC 59.273 40.000 0.00 0.00 42.13 2.01
1672 1698 8.889000 GTTGATCGTTGTATTGACTAAACAAAC 58.111 33.333 0.00 0.00 35.08 2.93
1673 1699 8.373048 TGATCGTTGTATTGACTAAACAAACT 57.627 30.769 0.00 0.00 35.08 2.66
1679 1705 9.575783 GTTGTATTGACTAAACAAACTGGAAAA 57.424 29.630 0.00 0.00 35.08 2.29
1680 1706 9.796120 TTGTATTGACTAAACAAACTGGAAAAG 57.204 29.630 0.00 0.00 33.44 2.27
1696 1722 5.606505 TGGAAAAGACCAAACTTAAATGCC 58.393 37.500 0.00 0.00 36.96 4.40
1698 1724 6.052360 GGAAAAGACCAAACTTAAATGCCAA 58.948 36.000 0.00 0.00 0.00 4.52
1700 1726 7.307930 GGAAAAGACCAAACTTAAATGCCAATG 60.308 37.037 0.00 0.00 0.00 2.82
1703 1729 5.990996 AGACCAAACTTAAATGCCAATGTTG 59.009 36.000 0.00 0.00 0.00 3.33
1756 1782 9.889128 CAAATGACTTTCATAATTATTTGGGGT 57.111 29.630 0.00 0.00 35.76 4.95
1822 1848 5.731591 TGCATGGAAAATAATGTGCAATCA 58.268 33.333 0.00 0.00 39.36 2.57
1827 1853 7.887996 TGGAAAATAATGTGCAATCAGAAAC 57.112 32.000 0.00 0.00 0.00 2.78
1830 1856 7.148590 GGAAAATAATGTGCAATCAGAAACACC 60.149 37.037 0.00 0.00 31.98 4.16
1833 1859 3.988379 TGTGCAATCAGAAACACCTTC 57.012 42.857 0.00 0.00 31.98 3.46
1837 1863 5.105392 TGTGCAATCAGAAACACCTTCTTTT 60.105 36.000 0.00 0.00 41.97 2.27
1838 1864 5.812127 GTGCAATCAGAAACACCTTCTTTTT 59.188 36.000 0.00 0.00 41.97 1.94
1839 1865 5.811613 TGCAATCAGAAACACCTTCTTTTTG 59.188 36.000 0.00 0.00 41.97 2.44
1841 1867 5.535753 ATCAGAAACACCTTCTTTTTGGG 57.464 39.130 0.00 0.00 41.97 4.12
1842 1868 3.132111 TCAGAAACACCTTCTTTTTGGGC 59.868 43.478 0.00 0.00 41.97 5.36
1847 1873 1.618343 CACCTTCTTTTTGGGCGGAAT 59.382 47.619 0.00 0.00 0.00 3.01
1856 1882 1.699730 TTGGGCGGAATATCTCTCGA 58.300 50.000 0.00 0.00 0.00 4.04
1885 1911 4.002906 AGATAGTTGGTTTCTTCGTGCA 57.997 40.909 0.00 0.00 0.00 4.57
1899 1925 3.378911 TCGTGCAAGTCATAGTTGTCA 57.621 42.857 0.00 0.00 31.33 3.58
1913 1939 8.648097 GTCATAGTTGTCATAAACTATATGCCG 58.352 37.037 8.78 0.00 46.70 5.69
1918 1944 9.120538 AGTTGTCATAAACTATATGCCGAAATT 57.879 29.630 0.00 0.00 38.62 1.82
1919 1945 9.169468 GTTGTCATAAACTATATGCCGAAATTG 57.831 33.333 0.00 0.00 0.00 2.32
1920 1946 8.445275 TGTCATAAACTATATGCCGAAATTGT 57.555 30.769 0.00 0.00 0.00 2.71
1924 1950 9.729023 CATAAACTATATGCCGAAATTGTTTGA 57.271 29.630 0.00 0.00 34.46 2.69
1997 2056 5.645497 CAGAAAACTCTTCGAGGGAATGATT 59.355 40.000 0.00 0.00 33.35 2.57
2014 2073 6.258507 GGAATGATTTGGTCAATTATGGTTGC 59.741 38.462 0.00 0.00 40.97 4.17
2016 2075 3.971245 TTTGGTCAATTATGGTTGCCC 57.029 42.857 0.00 0.00 0.00 5.36
2024 2083 1.917872 TTATGGTTGCCCACACCTTC 58.082 50.000 0.00 0.00 45.65 3.46
2139 2199 2.979813 CGTGGAAAAGGAAATTTGCTCG 59.020 45.455 13.01 7.20 39.75 5.03
2171 2231 2.166821 TGTCCATTGCCATTGTTTGC 57.833 45.000 0.00 0.00 0.00 3.68
2178 2239 6.018832 GTCCATTGCCATTGTTTGCATTATAC 60.019 38.462 0.00 0.00 37.33 1.47
2184 2245 7.261325 TGCCATTGTTTGCATTATACGTTTAT 58.739 30.769 0.00 0.00 31.31 1.40
2277 2342 8.152246 ACTATAGCAAATTTATTGGCATGCAAT 58.848 29.630 21.36 18.14 39.20 3.56
2293 2358 7.230108 TGGCATGCAATAATTTCAAAGGAAAAA 59.770 29.630 21.36 0.00 45.52 1.94
2332 2397 5.271598 TGGAAATTATGCCATGAAACTCCT 58.728 37.500 0.00 0.00 0.00 3.69
2356 2421 9.238368 CCTTTGTGGAGGAAAACTATTATTGTA 57.762 33.333 0.00 0.00 39.25 2.41
2403 2468 6.851330 CGACGAGAAGGGATTTAATTTATTGC 59.149 38.462 0.00 0.00 0.00 3.56
2406 2471 7.013369 ACGAGAAGGGATTTAATTTATTGCTCC 59.987 37.037 0.00 0.00 0.00 4.70
2415 2480 9.468532 GATTTAATTTATTGCTCCATCTTGGAC 57.531 33.333 0.00 0.00 42.67 4.02
2418 2483 2.725221 ATTGCTCCATCTTGGACTCC 57.275 50.000 0.00 0.00 42.67 3.85
2423 2488 2.356535 GCTCCATCTTGGACTCCATTGT 60.357 50.000 0.00 0.00 42.67 2.71
2424 2489 3.875369 GCTCCATCTTGGACTCCATTGTT 60.875 47.826 0.00 0.00 42.67 2.83
2429 2494 5.887598 CCATCTTGGACTCCATTGTTTATGA 59.112 40.000 0.00 0.00 40.96 2.15
2430 2495 6.377996 CCATCTTGGACTCCATTGTTTATGAA 59.622 38.462 0.00 0.00 40.96 2.57
2461 2526 8.753497 ATATGGAAAAGGAAGAGTGGAAATAC 57.247 34.615 0.00 0.00 0.00 1.89
2463 2528 6.610830 TGGAAAAGGAAGAGTGGAAATACTT 58.389 36.000 0.00 0.00 0.00 2.24
2471 2536 7.038017 AGGAAGAGTGGAAATACTTCTCAATGA 60.038 37.037 0.00 0.00 38.78 2.57
2507 2572 5.776173 TTACGGAATTTCACACAATGGTT 57.224 34.783 0.00 0.00 0.00 3.67
2509 2574 5.776173 ACGGAATTTCACACAATGGTTTA 57.224 34.783 0.00 0.00 0.00 2.01
2525 2590 8.650490 ACAATGGTTTATTCTTTCTTGATGGTT 58.350 29.630 0.00 0.00 0.00 3.67
2533 2598 6.975196 TTCTTTCTTGATGGTTCATTGGAA 57.025 33.333 0.00 0.00 0.00 3.53
2537 2602 7.723616 TCTTTCTTGATGGTTCATTGGAAGTTA 59.276 33.333 0.00 0.00 32.62 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.708734 CCGGTTCCACGCACGAAC 61.709 66.667 0.00 2.18 39.12 3.95
3 4 4.973055 CCCGGTTCCACGCACGAA 62.973 66.667 0.00 0.00 0.00 3.85
8 9 4.629523 TTGGTCCCGGTTCCACGC 62.630 66.667 13.35 0.00 33.12 5.34
9 10 1.512156 CTTTTGGTCCCGGTTCCACG 61.512 60.000 13.35 3.50 33.12 4.94
10 11 1.176619 CCTTTTGGTCCCGGTTCCAC 61.177 60.000 13.35 0.00 33.12 4.02
11 12 1.151908 CCTTTTGGTCCCGGTTCCA 59.848 57.895 10.26 10.26 34.07 3.53
12 13 4.090723 CCTTTTGGTCCCGGTTCC 57.909 61.111 0.00 2.55 34.07 3.62
22 23 3.458287 CCGGTTCATCTGGACCTTTTGG 61.458 54.545 6.11 0.00 45.09 3.28
23 24 1.812571 CCGGTTCATCTGGACCTTTTG 59.187 52.381 6.11 0.00 45.09 2.44
24 25 1.271926 CCCGGTTCATCTGGACCTTTT 60.272 52.381 0.00 0.00 45.09 2.27
25 26 0.328258 CCCGGTTCATCTGGACCTTT 59.672 55.000 0.00 0.00 45.09 3.11
26 27 0.546747 TCCCGGTTCATCTGGACCTT 60.547 55.000 0.00 0.00 45.09 3.50
27 28 1.080354 TCCCGGTTCATCTGGACCT 59.920 57.895 0.00 0.00 45.09 3.85
28 29 1.221021 GTCCCGGTTCATCTGGACC 59.779 63.158 0.00 0.00 45.09 4.46
29 30 1.221021 GGTCCCGGTTCATCTGGAC 59.779 63.158 0.00 0.00 45.09 4.02
30 31 2.355986 CGGTCCCGGTTCATCTGGA 61.356 63.158 0.00 0.00 45.09 3.86
31 32 1.686325 ATCGGTCCCGGTTCATCTGG 61.686 60.000 5.80 0.00 42.06 3.86
32 33 0.530650 CATCGGTCCCGGTTCATCTG 60.531 60.000 5.80 0.00 40.25 2.90
33 34 1.686325 CCATCGGTCCCGGTTCATCT 61.686 60.000 5.80 0.00 40.25 2.90
34 35 1.227556 CCATCGGTCCCGGTTCATC 60.228 63.158 5.80 0.00 40.25 2.92
35 36 2.908015 CCATCGGTCCCGGTTCAT 59.092 61.111 5.80 0.00 40.25 2.57
36 37 4.090588 GCCATCGGTCCCGGTTCA 62.091 66.667 5.80 0.00 40.25 3.18
37 38 4.851179 GGCCATCGGTCCCGGTTC 62.851 72.222 5.80 0.00 40.25 3.62
53 54 2.291043 AAGAGGGTAGCCACGTGGG 61.291 63.158 34.58 17.30 40.85 4.61
54 55 1.079127 CAAGAGGGTAGCCACGTGG 60.079 63.158 30.66 30.66 38.53 4.94
55 56 0.108615 CTCAAGAGGGTAGCCACGTG 60.109 60.000 14.62 15.40 0.00 4.49
56 57 0.251653 TCTCAAGAGGGTAGCCACGT 60.252 55.000 14.62 1.78 0.00 4.49
57 58 0.457851 CTCTCAAGAGGGTAGCCACG 59.542 60.000 14.62 0.00 38.48 4.94
58 59 1.205893 CACTCTCAAGAGGGTAGCCAC 59.794 57.143 14.62 7.06 40.92 5.01
59 60 1.561643 CACTCTCAAGAGGGTAGCCA 58.438 55.000 14.62 0.00 40.92 4.75
66 67 3.070159 TCACCAAGAACACTCTCAAGAGG 59.930 47.826 11.54 3.54 46.13 3.69
67 68 5.452496 TTCTCACCAAGAACACTCTCAAGAG 60.452 44.000 5.48 5.48 42.14 2.85
68 69 3.960755 TCTCACCAAGAACACTCTCAAGA 59.039 43.478 0.00 0.00 0.00 3.02
69 70 4.327982 TCTCACCAAGAACACTCTCAAG 57.672 45.455 0.00 0.00 0.00 3.02
70 71 4.753516 TTCTCACCAAGAACACTCTCAA 57.246 40.909 0.00 0.00 39.12 3.02
79 80 5.924356 TGTCAACTATGTTCTCACCAAGAA 58.076 37.500 0.00 0.00 41.81 2.52
80 81 5.545063 TGTCAACTATGTTCTCACCAAGA 57.455 39.130 0.00 0.00 0.00 3.02
81 82 5.180117 CCTTGTCAACTATGTTCTCACCAAG 59.820 44.000 0.00 0.00 0.00 3.61
82 83 5.063204 CCTTGTCAACTATGTTCTCACCAA 58.937 41.667 0.00 0.00 0.00 3.67
83 84 4.346709 TCCTTGTCAACTATGTTCTCACCA 59.653 41.667 0.00 0.00 0.00 4.17
84 85 4.894784 TCCTTGTCAACTATGTTCTCACC 58.105 43.478 0.00 0.00 0.00 4.02
85 86 4.390297 GCTCCTTGTCAACTATGTTCTCAC 59.610 45.833 0.00 0.00 0.00 3.51
86 87 4.569943 GCTCCTTGTCAACTATGTTCTCA 58.430 43.478 0.00 0.00 0.00 3.27
87 88 3.614616 CGCTCCTTGTCAACTATGTTCTC 59.385 47.826 0.00 0.00 0.00 2.87
88 89 3.258372 TCGCTCCTTGTCAACTATGTTCT 59.742 43.478 0.00 0.00 0.00 3.01
89 90 3.585862 TCGCTCCTTGTCAACTATGTTC 58.414 45.455 0.00 0.00 0.00 3.18
90 91 3.678056 TCGCTCCTTGTCAACTATGTT 57.322 42.857 0.00 0.00 0.00 2.71
91 92 3.326747 GTTCGCTCCTTGTCAACTATGT 58.673 45.455 0.00 0.00 0.00 2.29
92 93 2.673368 GGTTCGCTCCTTGTCAACTATG 59.327 50.000 0.00 0.00 0.00 2.23
93 94 2.674177 CGGTTCGCTCCTTGTCAACTAT 60.674 50.000 0.00 0.00 0.00 2.12
94 95 1.336517 CGGTTCGCTCCTTGTCAACTA 60.337 52.381 0.00 0.00 0.00 2.24
95 96 0.600255 CGGTTCGCTCCTTGTCAACT 60.600 55.000 0.00 0.00 0.00 3.16
96 97 1.566018 CCGGTTCGCTCCTTGTCAAC 61.566 60.000 0.00 0.00 0.00 3.18
97 98 1.301401 CCGGTTCGCTCCTTGTCAA 60.301 57.895 0.00 0.00 0.00 3.18
98 99 2.342279 CCGGTTCGCTCCTTGTCA 59.658 61.111 0.00 0.00 0.00 3.58
99 100 2.240162 ATCCCGGTTCGCTCCTTGTC 62.240 60.000 0.00 0.00 0.00 3.18
100 101 1.838073 AATCCCGGTTCGCTCCTTGT 61.838 55.000 0.00 0.00 0.00 3.16
101 102 0.177141 TAATCCCGGTTCGCTCCTTG 59.823 55.000 0.00 0.00 0.00 3.61
102 103 0.906775 TTAATCCCGGTTCGCTCCTT 59.093 50.000 0.00 0.00 0.00 3.36
103 104 1.129058 ATTAATCCCGGTTCGCTCCT 58.871 50.000 0.00 0.00 0.00 3.69
104 105 1.226746 CATTAATCCCGGTTCGCTCC 58.773 55.000 0.00 0.00 0.00 4.70
105 106 1.226746 CCATTAATCCCGGTTCGCTC 58.773 55.000 0.00 0.00 0.00 5.03
106 107 0.544697 ACCATTAATCCCGGTTCGCT 59.455 50.000 0.00 0.00 0.00 4.93
107 108 2.243602 TACCATTAATCCCGGTTCGC 57.756 50.000 0.00 0.00 34.12 4.70
108 109 4.386652 CGTAATACCATTAATCCCGGTTCG 59.613 45.833 0.00 0.00 34.12 3.95
109 110 5.540911 TCGTAATACCATTAATCCCGGTTC 58.459 41.667 0.00 0.00 34.12 3.62
110 111 5.511888 CCTCGTAATACCATTAATCCCGGTT 60.512 44.000 0.00 0.00 34.12 4.44
111 112 4.020839 CCTCGTAATACCATTAATCCCGGT 60.021 45.833 0.00 1.91 36.79 5.28
112 113 4.221262 TCCTCGTAATACCATTAATCCCGG 59.779 45.833 0.00 0.00 0.00 5.73
113 114 5.047519 AGTCCTCGTAATACCATTAATCCCG 60.048 44.000 0.00 0.00 0.00 5.14
114 115 6.356186 AGTCCTCGTAATACCATTAATCCC 57.644 41.667 0.00 0.00 0.00 3.85
115 116 7.816513 GGTTAGTCCTCGTAATACCATTAATCC 59.183 40.741 0.00 0.00 0.00 3.01
116 117 8.362639 TGGTTAGTCCTCGTAATACCATTAATC 58.637 37.037 0.00 0.00 37.07 1.75
117 118 8.253867 TGGTTAGTCCTCGTAATACCATTAAT 57.746 34.615 0.00 0.00 37.07 1.40
118 119 7.658525 TGGTTAGTCCTCGTAATACCATTAA 57.341 36.000 0.00 0.00 37.07 1.40
119 120 7.844493 ATGGTTAGTCCTCGTAATACCATTA 57.156 36.000 0.00 0.00 40.90 1.90
120 121 6.742559 ATGGTTAGTCCTCGTAATACCATT 57.257 37.500 0.00 0.00 40.90 3.16
121 122 7.727186 TCTTATGGTTAGTCCTCGTAATACCAT 59.273 37.037 0.00 0.00 44.57 3.55
122 123 7.013655 GTCTTATGGTTAGTCCTCGTAATACCA 59.986 40.741 0.00 0.00 38.43 3.25
123 124 7.013655 TGTCTTATGGTTAGTCCTCGTAATACC 59.986 40.741 0.00 0.00 37.07 2.73
124 125 7.934457 TGTCTTATGGTTAGTCCTCGTAATAC 58.066 38.462 0.00 0.00 37.07 1.89
125 126 8.701908 ATGTCTTATGGTTAGTCCTCGTAATA 57.298 34.615 0.00 0.00 37.07 0.98
126 127 7.598759 ATGTCTTATGGTTAGTCCTCGTAAT 57.401 36.000 0.00 0.00 37.07 1.89
127 128 7.414222 AATGTCTTATGGTTAGTCCTCGTAA 57.586 36.000 0.00 0.00 37.07 3.18
128 129 6.040166 GGAATGTCTTATGGTTAGTCCTCGTA 59.960 42.308 0.00 0.00 37.07 3.43
129 130 5.163437 GGAATGTCTTATGGTTAGTCCTCGT 60.163 44.000 0.00 0.00 37.07 4.18
130 131 5.069251 AGGAATGTCTTATGGTTAGTCCTCG 59.931 44.000 0.00 0.00 37.07 4.63
131 132 6.487299 AGGAATGTCTTATGGTTAGTCCTC 57.513 41.667 0.00 0.00 37.07 3.71
132 133 8.568617 AATAGGAATGTCTTATGGTTAGTCCT 57.431 34.615 0.00 0.00 36.88 3.85
138 139 9.588096 GGGAATAAATAGGAATGTCTTATGGTT 57.412 33.333 0.00 0.00 0.00 3.67
139 140 7.883311 CGGGAATAAATAGGAATGTCTTATGGT 59.117 37.037 0.00 0.00 0.00 3.55
140 141 7.336931 CCGGGAATAAATAGGAATGTCTTATGG 59.663 40.741 0.00 0.00 0.00 2.74
141 142 8.100791 TCCGGGAATAAATAGGAATGTCTTATG 58.899 37.037 0.00 0.00 0.00 1.90
142 143 8.214721 TCCGGGAATAAATAGGAATGTCTTAT 57.785 34.615 0.00 0.00 0.00 1.73
143 144 7.621006 TCCGGGAATAAATAGGAATGTCTTA 57.379 36.000 0.00 0.00 0.00 2.10
144 145 6.509523 TCCGGGAATAAATAGGAATGTCTT 57.490 37.500 0.00 0.00 0.00 3.01
145 146 6.509523 TTCCGGGAATAAATAGGAATGTCT 57.490 37.500 5.09 0.00 36.21 3.41
146 147 7.761038 ATTTCCGGGAATAAATAGGAATGTC 57.239 36.000 6.05 0.00 40.23 3.06
147 148 7.782644 TGAATTTCCGGGAATAAATAGGAATGT 59.217 33.333 8.85 0.00 40.23 2.71
148 149 8.177119 TGAATTTCCGGGAATAAATAGGAATG 57.823 34.615 8.85 0.00 40.23 2.67
149 150 8.638873 GTTGAATTTCCGGGAATAAATAGGAAT 58.361 33.333 8.85 0.00 40.23 3.01
150 151 7.201750 CGTTGAATTTCCGGGAATAAATAGGAA 60.202 37.037 8.85 0.00 39.00 3.36
151 152 6.261381 CGTTGAATTTCCGGGAATAAATAGGA 59.739 38.462 8.85 0.00 0.00 2.94
152 153 6.435428 CGTTGAATTTCCGGGAATAAATAGG 58.565 40.000 8.85 0.00 0.00 2.57
153 154 6.435428 CCGTTGAATTTCCGGGAATAAATAG 58.565 40.000 8.85 5.56 38.09 1.73
154 155 5.221087 GCCGTTGAATTTCCGGGAATAAATA 60.221 40.000 8.85 0.00 41.96 1.40
155 156 4.440940 GCCGTTGAATTTCCGGGAATAAAT 60.441 41.667 8.85 0.09 41.96 1.40
156 157 3.119424 GCCGTTGAATTTCCGGGAATAAA 60.119 43.478 8.85 3.83 41.96 1.40
157 158 2.424246 GCCGTTGAATTTCCGGGAATAA 59.576 45.455 8.85 0.00 41.96 1.40
158 159 2.018515 GCCGTTGAATTTCCGGGAATA 58.981 47.619 8.85 2.31 41.96 1.75
159 160 0.815095 GCCGTTGAATTTCCGGGAAT 59.185 50.000 10.86 0.63 41.96 3.01
160 161 0.537600 TGCCGTTGAATTTCCGGGAA 60.538 50.000 5.09 5.09 39.20 3.97
161 162 1.073373 TGCCGTTGAATTTCCGGGA 59.927 52.632 13.64 9.41 41.96 5.14
162 163 1.211709 GTGCCGTTGAATTTCCGGG 59.788 57.895 13.64 5.11 41.96 5.73
163 164 1.211709 GGTGCCGTTGAATTTCCGG 59.788 57.895 9.06 9.06 44.46 5.14
164 165 0.312416 TTGGTGCCGTTGAATTTCCG 59.688 50.000 0.00 0.00 0.00 4.30
165 166 1.339929 AGTTGGTGCCGTTGAATTTCC 59.660 47.619 0.00 0.00 0.00 3.13
166 167 2.293399 AGAGTTGGTGCCGTTGAATTTC 59.707 45.455 0.00 0.00 0.00 2.17
167 168 2.293399 GAGAGTTGGTGCCGTTGAATTT 59.707 45.455 0.00 0.00 0.00 1.82
168 169 1.880027 GAGAGTTGGTGCCGTTGAATT 59.120 47.619 0.00 0.00 0.00 2.17
169 170 1.523758 GAGAGTTGGTGCCGTTGAAT 58.476 50.000 0.00 0.00 0.00 2.57
170 171 0.534203 GGAGAGTTGGTGCCGTTGAA 60.534 55.000 0.00 0.00 0.00 2.69
171 172 1.070786 GGAGAGTTGGTGCCGTTGA 59.929 57.895 0.00 0.00 0.00 3.18
172 173 1.966451 GGGAGAGTTGGTGCCGTTG 60.966 63.158 0.00 0.00 0.00 4.10
173 174 2.430367 GGGAGAGTTGGTGCCGTT 59.570 61.111 0.00 0.00 0.00 4.44
174 175 3.637273 GGGGAGAGTTGGTGCCGT 61.637 66.667 0.00 0.00 0.00 5.68
175 176 4.760047 CGGGGAGAGTTGGTGCCG 62.760 72.222 0.00 0.00 0.00 5.69
176 177 3.637273 ACGGGGAGAGTTGGTGCC 61.637 66.667 0.00 0.00 0.00 5.01
177 178 2.358737 CACGGGGAGAGTTGGTGC 60.359 66.667 0.00 0.00 0.00 5.01
178 179 1.004918 GTCACGGGGAGAGTTGGTG 60.005 63.158 0.00 0.00 0.00 4.17
179 180 2.214920 GGTCACGGGGAGAGTTGGT 61.215 63.158 0.00 0.00 0.00 3.67
180 181 2.214216 TGGTCACGGGGAGAGTTGG 61.214 63.158 0.00 0.00 0.00 3.77
181 182 1.004918 GTGGTCACGGGGAGAGTTG 60.005 63.158 0.00 0.00 0.00 3.16
182 183 0.763223 AAGTGGTCACGGGGAGAGTT 60.763 55.000 0.00 0.00 36.20 3.01
183 184 1.152312 AAGTGGTCACGGGGAGAGT 60.152 57.895 0.00 0.00 36.20 3.24
184 185 0.900647 AGAAGTGGTCACGGGGAGAG 60.901 60.000 0.00 0.00 36.20 3.20
185 186 0.471211 AAGAAGTGGTCACGGGGAGA 60.471 55.000 0.00 0.00 36.20 3.71
186 187 0.037232 GAAGAAGTGGTCACGGGGAG 60.037 60.000 0.00 0.00 36.20 4.30
187 188 0.761323 TGAAGAAGTGGTCACGGGGA 60.761 55.000 0.00 0.00 36.20 4.81
188 189 0.320771 CTGAAGAAGTGGTCACGGGG 60.321 60.000 0.00 0.00 36.20 5.73
189 190 0.679505 TCTGAAGAAGTGGTCACGGG 59.320 55.000 0.00 0.00 36.20 5.28
190 191 2.341257 CATCTGAAGAAGTGGTCACGG 58.659 52.381 0.00 0.00 36.20 4.94
191 192 2.341257 CCATCTGAAGAAGTGGTCACG 58.659 52.381 0.00 0.00 36.20 4.35
192 193 2.039084 ACCCATCTGAAGAAGTGGTCAC 59.961 50.000 0.51 0.00 0.00 3.67
193 194 2.338809 ACCCATCTGAAGAAGTGGTCA 58.661 47.619 0.51 0.00 0.00 4.02
194 195 4.020128 AGTTACCCATCTGAAGAAGTGGTC 60.020 45.833 3.01 0.00 0.00 4.02
195 196 3.910627 AGTTACCCATCTGAAGAAGTGGT 59.089 43.478 0.51 2.78 0.00 4.16
196 197 4.559862 AGTTACCCATCTGAAGAAGTGG 57.440 45.455 0.00 0.00 0.00 4.00
197 198 8.043710 AGATAAAGTTACCCATCTGAAGAAGTG 58.956 37.037 0.00 0.00 0.00 3.16
198 199 8.152023 AGATAAAGTTACCCATCTGAAGAAGT 57.848 34.615 0.00 0.00 0.00 3.01
204 205 9.627123 CCATTTAAGATAAAGTTACCCATCTGA 57.373 33.333 0.00 0.00 0.00 3.27
205 206 8.352942 GCCATTTAAGATAAAGTTACCCATCTG 58.647 37.037 0.00 0.00 0.00 2.90
206 207 8.058847 TGCCATTTAAGATAAAGTTACCCATCT 58.941 33.333 0.00 0.00 0.00 2.90
207 208 8.232913 TGCCATTTAAGATAAAGTTACCCATC 57.767 34.615 0.00 0.00 0.00 3.51
208 209 8.782137 ATGCCATTTAAGATAAAGTTACCCAT 57.218 30.769 0.00 0.00 0.00 4.00
209 210 7.836685 TGATGCCATTTAAGATAAAGTTACCCA 59.163 33.333 0.00 0.00 0.00 4.51
210 211 8.232913 TGATGCCATTTAAGATAAAGTTACCC 57.767 34.615 0.00 0.00 0.00 3.69
214 215 9.995003 TTGTTTGATGCCATTTAAGATAAAGTT 57.005 25.926 0.00 0.00 0.00 2.66
215 216 9.423061 GTTGTTTGATGCCATTTAAGATAAAGT 57.577 29.630 0.00 0.00 0.00 2.66
216 217 9.421806 TGTTGTTTGATGCCATTTAAGATAAAG 57.578 29.630 0.00 0.00 0.00 1.85
217 218 9.941325 ATGTTGTTTGATGCCATTTAAGATAAA 57.059 25.926 0.00 0.00 0.00 1.40
218 219 9.585099 GATGTTGTTTGATGCCATTTAAGATAA 57.415 29.630 0.00 0.00 0.00 1.75
219 220 8.970020 AGATGTTGTTTGATGCCATTTAAGATA 58.030 29.630 0.00 0.00 0.00 1.98
220 221 7.844009 AGATGTTGTTTGATGCCATTTAAGAT 58.156 30.769 0.00 0.00 0.00 2.40
221 222 7.230849 AGATGTTGTTTGATGCCATTTAAGA 57.769 32.000 0.00 0.00 0.00 2.10
222 223 7.894376 AAGATGTTGTTTGATGCCATTTAAG 57.106 32.000 0.00 0.00 0.00 1.85
223 224 8.674263 AAAAGATGTTGTTTGATGCCATTTAA 57.326 26.923 0.00 0.00 0.00 1.52
224 225 8.674263 AAAAAGATGTTGTTTGATGCCATTTA 57.326 26.923 0.00 0.00 0.00 1.40
225 226 7.571080 AAAAAGATGTTGTTTGATGCCATTT 57.429 28.000 0.00 0.00 0.00 2.32
259 260 9.515226 GGCACTATTCCAAATTAGTATATTCCA 57.485 33.333 0.00 0.00 0.00 3.53
260 261 9.740710 AGGCACTATTCCAAATTAGTATATTCC 57.259 33.333 0.00 0.00 36.02 3.01
264 265 9.778741 CTTGAGGCACTATTCCAAATTAGTATA 57.221 33.333 0.00 0.00 41.55 1.47
265 266 7.721399 CCTTGAGGCACTATTCCAAATTAGTAT 59.279 37.037 0.00 0.00 41.55 2.12
266 267 7.054124 CCTTGAGGCACTATTCCAAATTAGTA 58.946 38.462 0.00 0.00 41.55 1.82
267 268 5.888161 CCTTGAGGCACTATTCCAAATTAGT 59.112 40.000 0.00 0.00 41.55 2.24
268 269 6.122277 TCCTTGAGGCACTATTCCAAATTAG 58.878 40.000 0.00 0.00 41.55 1.73
269 270 6.073447 TCCTTGAGGCACTATTCCAAATTA 57.927 37.500 0.00 0.00 41.55 1.40
270 271 4.934356 TCCTTGAGGCACTATTCCAAATT 58.066 39.130 0.00 0.00 41.55 1.82
271 272 4.591321 TCCTTGAGGCACTATTCCAAAT 57.409 40.909 0.00 0.00 41.55 2.32
272 273 4.380843 TTCCTTGAGGCACTATTCCAAA 57.619 40.909 0.00 0.00 41.55 3.28
273 274 4.380843 TTTCCTTGAGGCACTATTCCAA 57.619 40.909 0.00 0.00 41.55 3.53
274 275 4.380843 TTTTCCTTGAGGCACTATTCCA 57.619 40.909 0.00 0.00 41.55 3.53
275 276 4.339530 GGATTTTCCTTGAGGCACTATTCC 59.660 45.833 0.00 0.00 33.03 3.01
276 277 5.196695 AGGATTTTCCTTGAGGCACTATTC 58.803 41.667 0.00 0.00 46.91 1.75
305 306 0.671251 GAGCATCTGACCTCTACGGG 59.329 60.000 0.00 0.00 36.97 5.28
326 327 6.071334 AGGATCGATCAACTCACTTACTTTCA 60.071 38.462 25.93 0.00 0.00 2.69
334 335 4.035792 CGAGTAAGGATCGATCAACTCACT 59.964 45.833 32.00 22.29 42.76 3.41
345 346 2.029828 CCATTCTCCCGAGTAAGGATCG 60.030 54.545 0.00 0.00 39.86 3.69
351 352 3.040655 TCATCCCATTCTCCCGAGTAA 57.959 47.619 0.00 0.00 0.00 2.24
376 377 3.131223 TGCCAGAAGTTCTCTCGGATTAG 59.869 47.826 11.07 0.00 29.07 1.73
412 413 2.905415 AGTGGGATTTGGAGAATGCA 57.095 45.000 0.00 0.00 30.91 3.96
414 415 6.373774 GCTGATATAGTGGGATTTGGAGAATG 59.626 42.308 0.00 0.00 0.00 2.67
424 425 6.554982 TCTGTAGTTTGCTGATATAGTGGGAT 59.445 38.462 0.00 0.00 0.00 3.85
426 427 6.161855 TCTGTAGTTTGCTGATATAGTGGG 57.838 41.667 0.00 0.00 0.00 4.61
442 443 4.024048 CCACGCAACAAAATCTTCTGTAGT 60.024 41.667 0.00 0.00 0.00 2.73
453 454 3.932710 TGTTTAAATGCCACGCAACAAAA 59.067 34.783 0.00 0.00 43.62 2.44
469 470 8.062065 ACTGAAAACTGACCATTCTTGTTTAA 57.938 30.769 0.00 0.00 32.62 1.52
534 535 7.234371 TGGTATCTATTCCTCTCATCTTCCTTG 59.766 40.741 0.00 0.00 0.00 3.61
1059 1060 1.130561 GGCCACTCATTCAGTTTACGC 59.869 52.381 0.00 0.00 30.26 4.42
1107 1108 6.290294 AGATAAAAAGCAGCATCCACATTT 57.710 33.333 0.00 0.00 0.00 2.32
1131 1132 0.616111 ATCCTCCTGAGTGTTCGCCT 60.616 55.000 0.00 0.00 0.00 5.52
1215 1216 1.135972 GCACAAACCACATCAGCTACG 60.136 52.381 0.00 0.00 0.00 3.51
1344 1369 1.127343 AGCACTCCTCCAGAATAGGC 58.873 55.000 0.00 0.00 33.84 3.93
1363 1388 4.450053 CCAAAATCTTGCAAAAGGGACAA 58.550 39.130 0.00 0.00 0.00 3.18
1366 1391 3.312890 TCCCAAAATCTTGCAAAAGGGA 58.687 40.909 13.15 13.15 41.55 4.20
1398 1423 4.186856 TGACTCACGATTACAATGCTCA 57.813 40.909 0.00 0.00 0.00 4.26
1409 1435 4.569943 AGCAACTACATTTGACTCACGAT 58.430 39.130 0.00 0.00 0.00 3.73
1458 1484 1.695242 ACCCACACAGACGGATTGTTA 59.305 47.619 0.00 0.00 0.00 2.41
1507 1533 2.628178 CTGCTATATCGTCCACAAGGGA 59.372 50.000 0.00 0.00 45.89 4.20
1508 1534 2.365617 ACTGCTATATCGTCCACAAGGG 59.634 50.000 0.00 0.00 34.83 3.95
1509 1535 3.068165 TCACTGCTATATCGTCCACAAGG 59.932 47.826 0.00 0.00 0.00 3.61
1553 1579 1.783071 TTTTTGACGGGAAGGCCTTT 58.217 45.000 21.54 2.52 0.00 3.11
1628 1654 7.491372 ACGATCAACGCTCTTCATAGAAAATAA 59.509 33.333 0.00 0.00 46.94 1.40
1631 1657 5.168569 ACGATCAACGCTCTTCATAGAAAA 58.831 37.500 0.00 0.00 46.94 2.29
1644 1670 3.991605 AGTCAATACAACGATCAACGC 57.008 42.857 0.00 0.00 46.94 4.84
1653 1679 9.575783 TTTTCCAGTTTGTTTAGTCAATACAAC 57.424 29.630 0.00 0.00 32.00 3.32
1654 1680 9.796120 CTTTTCCAGTTTGTTTAGTCAATACAA 57.204 29.630 0.00 0.00 0.00 2.41
1668 1694 8.603181 CATTTAAGTTTGGTCTTTTCCAGTTTG 58.397 33.333 0.00 0.00 38.80 2.93
1672 1698 5.696270 GGCATTTAAGTTTGGTCTTTTCCAG 59.304 40.000 0.00 0.00 38.80 3.86
1673 1699 5.129485 TGGCATTTAAGTTTGGTCTTTTCCA 59.871 36.000 0.00 0.00 35.49 3.53
1679 1705 5.806654 ACATTGGCATTTAAGTTTGGTCT 57.193 34.783 0.00 0.00 0.00 3.85
1680 1706 5.988561 TCAACATTGGCATTTAAGTTTGGTC 59.011 36.000 0.00 0.00 0.00 4.02
1730 1756 9.889128 ACCCCAAATAATTATGAAAGTCATTTG 57.111 29.630 0.00 0.00 38.26 2.32
1827 1853 1.036707 TTCCGCCCAAAAAGAAGGTG 58.963 50.000 0.00 0.00 0.00 4.00
1830 1856 4.884164 AGAGATATTCCGCCCAAAAAGAAG 59.116 41.667 0.00 0.00 0.00 2.85
1833 1859 3.248602 CGAGAGATATTCCGCCCAAAAAG 59.751 47.826 0.00 0.00 0.00 2.27
1837 1863 1.699730 TCGAGAGATATTCCGCCCAA 58.300 50.000 0.00 0.00 33.31 4.12
1838 1864 1.699730 TTCGAGAGATATTCCGCCCA 58.300 50.000 0.00 0.00 41.60 5.36
1839 1865 2.814280 TTTCGAGAGATATTCCGCCC 57.186 50.000 0.00 0.00 41.60 6.13
1841 1867 8.912787 TCTATAATTTTCGAGAGATATTCCGC 57.087 34.615 0.00 0.00 41.60 5.54
1880 1906 5.778161 TTATGACAACTATGACTTGCACG 57.222 39.130 0.00 0.00 0.00 5.34
1965 2024 5.277857 TCGAAGAGTTTTCTGTCTTCCTT 57.722 39.130 6.52 0.00 43.95 3.36
2014 2073 2.191128 CTTCCTCTTGAAGGTGTGGG 57.809 55.000 0.00 0.00 45.66 4.61
2164 2224 8.722394 TGACAGATAAACGTATAATGCAAACAA 58.278 29.630 0.00 0.00 0.00 2.83
2360 2425 7.310664 TCTCGTCGAAGTTAAATAACATGTCT 58.689 34.615 0.00 0.00 38.62 3.41
2365 2430 5.865552 CCCTTCTCGTCGAAGTTAAATAACA 59.134 40.000 13.39 0.00 46.23 2.41
2366 2431 6.095377 TCCCTTCTCGTCGAAGTTAAATAAC 58.905 40.000 13.39 0.00 46.23 1.89
2367 2432 6.271488 TCCCTTCTCGTCGAAGTTAAATAA 57.729 37.500 13.39 0.00 46.23 1.40
2371 2436 4.796038 AATCCCTTCTCGTCGAAGTTAA 57.204 40.909 13.39 0.00 46.23 2.01
2372 2437 4.796038 AAATCCCTTCTCGTCGAAGTTA 57.204 40.909 13.39 4.71 46.23 2.24
2379 2444 7.931275 AGCAATAAATTAAATCCCTTCTCGTC 58.069 34.615 0.00 0.00 0.00 4.20
2381 2446 7.013274 TGGAGCAATAAATTAAATCCCTTCTCG 59.987 37.037 0.00 0.00 0.00 4.04
2403 2468 6.039047 CATAAACAATGGAGTCCAAGATGGAG 59.961 42.308 17.71 3.82 38.42 3.86
2406 2471 7.395190 TTCATAAACAATGGAGTCCAAGATG 57.605 36.000 17.71 17.28 36.95 2.90
2429 2494 9.853177 CCACTCTTCCTTTTCCATATAGTATTT 57.147 33.333 0.00 0.00 0.00 1.40
2430 2495 9.225682 TCCACTCTTCCTTTTCCATATAGTATT 57.774 33.333 0.00 0.00 0.00 1.89
2438 2503 6.794534 AGTATTTCCACTCTTCCTTTTCCAT 58.205 36.000 0.00 0.00 0.00 3.41
2488 2553 7.090173 AGAATAAACCATTGTGTGAAATTCCG 58.910 34.615 0.00 0.00 0.00 4.30
2496 2561 8.918658 CATCAAGAAAGAATAAACCATTGTGTG 58.081 33.333 0.00 0.00 0.00 3.82
2507 2572 8.648698 TCCAATGAACCATCAAGAAAGAATAA 57.351 30.769 0.00 0.00 39.49 1.40
2509 2574 7.234166 ACTTCCAATGAACCATCAAGAAAGAAT 59.766 33.333 0.00 0.00 39.49 2.40
2516 2581 5.183713 TGCTAACTTCCAATGAACCATCAAG 59.816 40.000 0.00 0.00 39.49 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.