Multiple sequence alignment - TraesCS3B01G580900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G580900 chr3B 100.000 3785 0 0 1 3785 809624786 809628570 0.000000e+00 6990.0
1 TraesCS3B01G580900 chr3B 100.000 2972 0 0 4132 7103 809628917 809631888 0.000000e+00 5489.0
2 TraesCS3B01G580900 chr3B 97.480 635 15 1 4132 4765 44007599 44006965 0.000000e+00 1083.0
3 TraesCS3B01G580900 chr3B 96.573 642 19 3 4132 4772 10292468 10291829 0.000000e+00 1061.0
4 TraesCS3B01G580900 chr3B 94.836 426 14 2 4773 5198 794696620 794696203 0.000000e+00 658.0
5 TraesCS3B01G580900 chr3B 94.799 423 14 2 4773 5195 10291599 10291185 0.000000e+00 652.0
6 TraesCS3B01G580900 chr3B 94.340 424 16 2 4773 5196 805275618 805275203 1.670000e-180 643.0
7 TraesCS3B01G580900 chr3B 91.379 232 15 3 3010 3241 809629975 809630201 5.350000e-81 313.0
8 TraesCS3B01G580900 chr3B 98.571 140 1 1 6571 6709 809631288 809631427 5.500000e-61 246.0
9 TraesCS3B01G580900 chr3B 98.571 140 1 1 6503 6642 809631356 809631494 5.500000e-61 246.0
10 TraesCS3B01G580900 chr3B 96.324 136 3 2 5698 5832 804288131 804288265 9.270000e-54 222.0
11 TraesCS3B01G580900 chr3B 72.177 611 150 20 48 648 794316323 794316923 1.230000e-37 169.0
12 TraesCS3B01G580900 chr3B 97.260 73 1 1 6638 6709 809631288 809631360 9.680000e-24 122.0
13 TraesCS3B01G580900 chr3B 97.260 73 1 1 6503 6575 809631423 809631494 9.680000e-24 122.0
14 TraesCS3B01G580900 chr3B 88.506 87 8 2 7018 7103 412598248 412598333 3.500000e-18 104.0
15 TraesCS3B01G580900 chr3D 97.264 2120 50 5 1123 3241 602752504 602750392 0.000000e+00 3587.0
16 TraesCS3B01G580900 chr3D 96.604 2120 64 5 1123 3241 603866332 603868444 0.000000e+00 3509.0
17 TraesCS3B01G580900 chr3D 94.110 1596 47 17 856 2433 602427381 602428947 0.000000e+00 2383.0
18 TraesCS3B01G580900 chr3D 91.661 1415 76 17 844 2227 602653181 602654584 0.000000e+00 1921.0
19 TraesCS3B01G580900 chr3D 94.957 813 37 3 2431 3241 602656104 602656914 0.000000e+00 1271.0
20 TraesCS3B01G580900 chr3D 94.840 814 39 1 2431 3241 602430577 602431390 0.000000e+00 1267.0
21 TraesCS3B01G580900 chr3D 94.821 811 38 2 2431 3241 602428984 602429790 0.000000e+00 1262.0
22 TraesCS3B01G580900 chr3D 82.107 1509 187 35 955 2398 568493740 568495230 0.000000e+00 1214.0
23 TraesCS3B01G580900 chr3D 90.920 870 51 9 1 860 602407229 602408080 0.000000e+00 1144.0
24 TraesCS3B01G580900 chr3D 92.699 767 53 2 1 767 602585418 602586181 0.000000e+00 1103.0
25 TraesCS3B01G580900 chr3D 92.568 767 54 2 1 767 602553091 602553854 0.000000e+00 1098.0
26 TraesCS3B01G580900 chr3D 92.651 694 29 8 1753 2433 602429856 602430540 0.000000e+00 979.0
27 TraesCS3B01G580900 chr3D 98.444 514 7 1 5190 5702 602750619 602750106 0.000000e+00 904.0
28 TraesCS3B01G580900 chr3D 95.298 553 15 8 5826 6376 602750111 602749568 0.000000e+00 867.0
29 TraesCS3B01G580900 chr3D 94.455 505 27 1 5198 5702 603868226 603868729 0.000000e+00 776.0
30 TraesCS3B01G580900 chr3D 84.568 810 90 20 2438 3241 568495319 568496099 0.000000e+00 771.0
31 TraesCS3B01G580900 chr3D 91.444 561 28 11 5824 6376 603868729 603869277 0.000000e+00 752.0
32 TraesCS3B01G580900 chr3D 94.433 467 16 6 6638 7103 602749395 602748938 0.000000e+00 710.0
33 TraesCS3B01G580900 chr3D 90.211 521 42 5 5190 5702 602656683 602657202 0.000000e+00 671.0
34 TraesCS3B01G580900 chr3D 89.057 530 40 8 5190 5702 602431156 602431684 6.010000e-180 641.0
35 TraesCS3B01G580900 chr3D 84.250 527 47 20 5196 5711 568495896 568496397 1.390000e-131 481.0
36 TraesCS3B01G580900 chr3D 96.831 284 9 0 5198 5481 602429572 602429855 6.450000e-130 475.0
37 TraesCS3B01G580900 chr3D 84.783 414 15 17 5826 6224 602431696 602432076 8.700000e-99 372.0
38 TraesCS3B01G580900 chr3D 84.091 396 27 14 5814 6203 568496469 568496834 4.080000e-92 350.0
39 TraesCS3B01G580900 chr3D 85.390 308 40 3 6799 7103 512253408 512253713 1.490000e-81 315.0
40 TraesCS3B01G580900 chr3D 89.837 246 9 4 5980 6224 602666738 602666968 1.160000e-77 302.0
41 TraesCS3B01G580900 chr3D 95.506 178 3 2 6372 6549 602749522 602749350 5.430000e-71 279.0
42 TraesCS3B01G580900 chr3D 75.537 605 124 22 57 649 530307863 530308455 7.020000e-70 276.0
43 TraesCS3B01G580900 chr3D 89.352 216 21 2 956 1169 602752720 602752505 3.270000e-68 270.0
44 TraesCS3B01G580900 chr3D 89.671 213 20 2 956 1166 603866116 603866328 3.270000e-68 270.0
45 TraesCS3B01G580900 chr3D 89.032 155 11 3 2283 2432 602655913 602656066 3.380000e-43 187.0
46 TraesCS3B01G580900 chr3D 74.922 319 65 13 1644 1958 103788438 103788745 1.610000e-26 132.0
47 TraesCS3B01G580900 chr3D 87.755 98 6 2 5826 5923 602657212 602657303 7.530000e-20 110.0
48 TraesCS3B01G580900 chr3D 85.714 98 8 2 856 948 602752885 602752789 1.630000e-16 99.0
49 TraesCS3B01G580900 chr3D 86.316 95 7 2 856 945 603865951 603866044 1.630000e-16 99.0
50 TraesCS3B01G580900 chr3D 93.617 47 1 2 6571 6616 602749395 602749350 1.280000e-07 69.4
51 TraesCS3B01G580900 chrUn 96.604 2120 64 5 1123 3241 276044414 276042302 0.000000e+00 3509.0
52 TraesCS3B01G580900 chrUn 94.455 505 27 1 5198 5702 276042520 276042017 0.000000e+00 776.0
53 TraesCS3B01G580900 chrUn 97.941 437 7 2 3244 3679 150156134 150156569 0.000000e+00 756.0
54 TraesCS3B01G580900 chrUn 91.444 561 28 11 5824 6376 276042017 276041469 0.000000e+00 752.0
55 TraesCS3B01G580900 chrUn 97.712 437 8 2 3244 3679 172332276 172331841 0.000000e+00 750.0
56 TraesCS3B01G580900 chrUn 97.712 437 8 2 3244 3679 428782513 428782948 0.000000e+00 750.0
57 TraesCS3B01G580900 chrUn 97.273 440 10 2 3244 3682 172364586 172364148 0.000000e+00 745.0
58 TraesCS3B01G580900 chrUn 94.563 423 15 2 4773 5195 65693069 65692655 0.000000e+00 647.0
59 TraesCS3B01G580900 chrUn 92.671 423 23 1 4773 5195 150117599 150118013 2.830000e-168 603.0
60 TraesCS3B01G580900 chrUn 89.352 216 21 2 956 1169 276044630 276044415 3.270000e-68 270.0
61 TraesCS3B01G580900 chrUn 97.321 112 3 0 3674 3785 228096604 228096715 2.620000e-44 191.0
62 TraesCS3B01G580900 chrUn 97.321 112 3 0 3674 3785 257022775 257022664 2.620000e-44 191.0
63 TraesCS3B01G580900 chrUn 97.321 112 3 0 3674 3785 275323103 275322992 2.620000e-44 191.0
64 TraesCS3B01G580900 chrUn 97.321 112 3 0 3674 3785 349754293 349754182 2.620000e-44 191.0
65 TraesCS3B01G580900 chrUn 97.321 112 3 0 3674 3785 349756590 349756479 2.620000e-44 191.0
66 TraesCS3B01G580900 chrUn 97.297 111 3 0 3674 3784 41290756 41290646 9.410000e-44 189.0
67 TraesCS3B01G580900 chrUn 97.273 110 3 0 3674 3783 370926940 370927049 3.380000e-43 187.0
68 TraesCS3B01G580900 chrUn 97.273 110 3 0 3674 3783 370928846 370928955 3.380000e-43 187.0
69 TraesCS3B01G580900 chrUn 96.429 112 4 0 3674 3785 8375533 8375644 1.220000e-42 185.0
70 TraesCS3B01G580900 chrUn 96.429 112 4 0 3674 3785 8396717 8396828 1.220000e-42 185.0
71 TraesCS3B01G580900 chrUn 95.690 116 4 1 3671 3785 48847456 48847571 1.220000e-42 185.0
72 TraesCS3B01G580900 chrUn 96.429 112 4 0 3674 3785 356755969 356755858 1.220000e-42 185.0
73 TraesCS3B01G580900 chrUn 94.958 119 4 2 3669 3785 374252485 374252603 1.220000e-42 185.0
74 TraesCS3B01G580900 chrUn 94.958 119 4 2 3669 3785 463367759 463367877 1.220000e-42 185.0
75 TraesCS3B01G580900 chrUn 95.536 112 5 0 3674 3785 433684965 433685076 5.660000e-41 180.0
76 TraesCS3B01G580900 chrUn 85.714 98 8 2 856 948 276044795 276044699 1.630000e-16 99.0
77 TraesCS3B01G580900 chr5A 95.173 1326 41 7 1123 2433 31571587 31572904 0.000000e+00 2073.0
78 TraesCS3B01G580900 chr5A 96.417 642 22 1 4132 4772 563251160 563251801 0.000000e+00 1057.0
79 TraesCS3B01G580900 chr5A 93.663 505 31 1 5198 5702 31573539 31574042 0.000000e+00 754.0
80 TraesCS3B01G580900 chr5A 89.594 567 37 11 5824 6376 31574042 31574600 0.000000e+00 701.0
81 TraesCS3B01G580900 chr5A 89.176 425 20 7 4773 5197 563251847 563252245 2.290000e-139 507.0
82 TraesCS3B01G580900 chr5A 91.139 237 12 6 4961 5196 18094023 18094251 5.350000e-81 313.0
83 TraesCS3B01G580900 chr5A 88.732 213 22 2 956 1166 31571371 31571583 7.070000e-65 259.0
84 TraesCS3B01G580900 chr5A 84.264 197 24 6 3594 3785 520603022 520602828 1.220000e-42 185.0
85 TraesCS3B01G580900 chr5A 86.022 93 7 2 856 943 31571204 31571295 2.110000e-15 95.3
86 TraesCS3B01G580900 chr3A 92.006 1251 70 10 978 2218 732099079 732100309 0.000000e+00 1729.0
87 TraesCS3B01G580900 chr3A 93.195 1058 65 5 1174 2227 731995351 731994297 0.000000e+00 1548.0
88 TraesCS3B01G580900 chr3A 95.657 921 34 3 2323 3241 732076588 732077504 0.000000e+00 1474.0
89 TraesCS3B01G580900 chr3A 90.952 851 68 8 1 846 731996947 731996101 0.000000e+00 1136.0
90 TraesCS3B01G580900 chr3A 96.890 643 16 3 4132 4772 579000088 578999448 0.000000e+00 1074.0
91 TraesCS3B01G580900 chr3A 96.273 644 20 4 4132 4772 579003213 579002571 0.000000e+00 1053.0
92 TraesCS3B01G580900 chr3A 94.518 602 29 3 2640 3241 731991683 731991086 0.000000e+00 926.0
93 TraesCS3B01G580900 chr3A 94.778 517 23 2 5190 5702 732077277 732077793 0.000000e+00 802.0
94 TraesCS3B01G580900 chr3A 90.680 515 36 6 5198 5702 731991304 731990792 0.000000e+00 675.0
95 TraesCS3B01G580900 chr3A 90.291 412 16 8 5824 6224 731990792 731990394 1.060000e-142 518.0
96 TraesCS3B01G580900 chr3A 87.980 391 20 9 5826 6203 732077792 732078168 3.040000e-118 436.0
97 TraesCS3B01G580900 chr3A 90.667 300 23 4 1 298 732073051 732073347 1.860000e-105 394.0
98 TraesCS3B01G580900 chr3A 78.583 621 102 19 1618 2237 732427535 732428125 1.450000e-101 381.0
99 TraesCS3B01G580900 chr3A 98.020 202 4 0 2129 2330 732073363 732073564 1.130000e-92 351.0
100 TraesCS3B01G580900 chr3A 80.383 418 67 10 956 1366 732069237 732068828 3.220000e-78 303.0
101 TraesCS3B01G580900 chr3A 84.818 303 36 6 842 1144 731995637 731995345 5.390000e-76 296.0
102 TraesCS3B01G580900 chr3A 82.581 310 35 7 6812 7103 466632347 466632655 9.140000e-64 255.0
103 TraesCS3B01G580900 chr3A 87.556 225 17 1 2219 2432 731993021 731992797 4.250000e-62 250.0
104 TraesCS3B01G580900 chr3A 98.438 128 0 2 5701 5827 657422779 657422653 2.580000e-54 224.0
105 TraesCS3B01G580900 chr3A 94.326 141 7 1 5697 5837 154641504 154641365 1.550000e-51 215.0
106 TraesCS3B01G580900 chr3A 96.154 78 1 1 845 920 732098987 732099064 7.480000e-25 126.0
107 TraesCS3B01G580900 chr7B 94.744 761 29 6 4132 4883 729237099 729236341 0.000000e+00 1173.0
108 TraesCS3B01G580900 chr7B 97.692 130 1 2 5699 5827 115521685 115521557 9.270000e-54 222.0
109 TraesCS3B01G580900 chr7A 92.318 768 40 9 4132 4883 104638381 104639145 0.000000e+00 1074.0
110 TraesCS3B01G580900 chr7A 92.647 408 22 5 4789 5196 25710793 25710394 1.330000e-161 580.0
111 TraesCS3B01G580900 chr7A 88.024 334 37 3 6696 7029 166480577 166480907 6.680000e-105 392.0
112 TraesCS3B01G580900 chr1B 96.875 640 18 2 4132 4770 12818778 12818140 0.000000e+00 1070.0
113 TraesCS3B01G580900 chr1B 94.326 423 15 4 4773 5195 22147409 22147822 2.160000e-179 640.0
114 TraesCS3B01G580900 chr1B 94.090 423 17 2 4773 5195 12818093 12817679 2.790000e-178 636.0
115 TraesCS3B01G580900 chr1B 73.813 611 146 14 59 663 181111087 181111689 5.540000e-56 230.0
116 TraesCS3B01G580900 chr1B 96.923 130 2 2 5701 5829 650049979 650050107 4.310000e-52 217.0
117 TraesCS3B01G580900 chr1B 93.023 86 6 0 6464 6549 606582972 606582887 7.480000e-25 126.0
118 TraesCS3B01G580900 chr5B 96.734 643 16 4 4132 4772 639622865 639622226 0.000000e+00 1066.0
119 TraesCS3B01G580900 chr5B 95.035 423 13 3 4773 5195 473623348 473623762 0.000000e+00 658.0
120 TraesCS3B01G580900 chr5B 94.366 426 15 2 4773 5198 15179497 15179913 0.000000e+00 645.0
121 TraesCS3B01G580900 chr6B 97.727 440 8 2 3244 3682 124013863 124013425 0.000000e+00 756.0
122 TraesCS3B01G580900 chr6B 97.941 437 7 2 3244 3679 124054592 124054157 0.000000e+00 756.0
123 TraesCS3B01G580900 chr6B 97.727 440 6 3 3244 3682 124052340 124051904 0.000000e+00 754.0
124 TraesCS3B01G580900 chr6B 97.506 441 7 4 3244 3682 123978259 123977821 0.000000e+00 750.0
125 TraesCS3B01G580900 chr6B 97.500 440 9 2 3244 3682 124015931 124015493 0.000000e+00 750.0
126 TraesCS3B01G580900 chr6B 97.059 136 2 2 5693 5827 140361675 140361541 1.990000e-55 228.0
127 TraesCS3B01G580900 chr6B 96.992 133 2 2 5697 5828 601881296 601881427 9.270000e-54 222.0
128 TraesCS3B01G580900 chr6B 91.667 84 7 0 6466 6549 563292577 563292494 4.500000e-22 117.0
129 TraesCS3B01G580900 chr6B 92.453 53 3 1 6495 6546 515154836 515154888 2.750000e-09 75.0
130 TraesCS3B01G580900 chr2B 94.326 423 16 2 4773 5195 780022681 780022267 6.010000e-180 641.0
131 TraesCS3B01G580900 chr2B 94.104 424 17 2 4773 5196 174347715 174347300 7.770000e-179 638.0
132 TraesCS3B01G580900 chr6A 92.075 429 25 6 4773 5201 576915195 576914776 4.740000e-166 595.0
133 TraesCS3B01G580900 chr6A 92.157 408 24 4 4789 5196 1991288 1990889 2.880000e-158 569.0
134 TraesCS3B01G580900 chr6A 85.060 415 50 5 6695 7103 541244077 541244485 5.130000e-111 412.0
135 TraesCS3B01G580900 chr6A 82.394 426 56 11 6691 7103 136229160 136229579 3.150000e-93 353.0
136 TraesCS3B01G580900 chr6A 96.970 132 2 2 5697 5827 6860101 6859971 3.340000e-53 220.0
137 TraesCS3B01G580900 chr1A 93.120 407 20 1 4789 5195 513688364 513687966 2.210000e-164 590.0
138 TraesCS3B01G580900 chr1A 91.155 407 28 5 4789 5195 12602304 12601906 4.850000e-151 545.0
139 TraesCS3B01G580900 chr1A 82.310 407 58 10 6691 7093 463457061 463457457 2.450000e-89 340.0
140 TraesCS3B01G580900 chr1A 97.321 112 3 0 3674 3785 552711629 552711740 2.620000e-44 191.0
141 TraesCS3B01G580900 chr1A 97.321 112 3 0 3674 3785 552754508 552754619 2.620000e-44 191.0
142 TraesCS3B01G580900 chr7D 82.536 418 60 10 6695 7102 101248694 101248280 8.760000e-94 355.0
143 TraesCS3B01G580900 chr7D 97.321 112 3 0 3674 3785 17110784 17110895 2.620000e-44 191.0
144 TraesCS3B01G580900 chr6D 80.963 436 56 15 6691 7103 115644941 115644510 3.200000e-83 320.0
145 TraesCS3B01G580900 chr6D 95.690 116 4 1 3670 3785 455681289 455681403 1.220000e-42 185.0
146 TraesCS3B01G580900 chr4D 80.383 418 53 16 6696 7093 459302205 459302613 2.510000e-74 291.0
147 TraesCS3B01G580900 chr4D 93.103 145 8 2 5684 5827 454424601 454424744 2.010000e-50 211.0
148 TraesCS3B01G580900 chr4B 78.440 436 61 16 6691 7103 411713895 411713470 3.290000e-63 254.0
149 TraesCS3B01G580900 chr2A 80.634 284 29 11 6839 7102 12128571 12128294 5.620000e-46 196.0
150 TraesCS3B01G580900 chr5D 97.321 112 3 0 3674 3785 370021200 370021311 2.620000e-44 191.0
151 TraesCS3B01G580900 chr4A 78.893 289 37 11 6838 7103 685351033 685351320 2.630000e-39 174.0
152 TraesCS3B01G580900 chr1D 86.792 53 6 1 6498 6550 218973214 218973265 2.770000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G580900 chr3B 809624786 809631888 7102 False 1932.571429 6990 97.577286 1 7103 7 chr3B.!!$F4 7102
1 TraesCS3B01G580900 chr3B 44006965 44007599 634 True 1083.000000 1083 97.480000 4132 4765 1 chr3B.!!$R1 633
2 TraesCS3B01G580900 chr3B 10291185 10292468 1283 True 856.500000 1061 95.686000 4132 5195 2 chr3B.!!$R4 1063
3 TraesCS3B01G580900 chr3D 602407229 602408080 851 False 1144.000000 1144 90.920000 1 860 1 chr3D.!!$F4 859
4 TraesCS3B01G580900 chr3D 602585418 602586181 763 False 1103.000000 1103 92.699000 1 767 1 chr3D.!!$F6 766
5 TraesCS3B01G580900 chr3D 602553091 602553854 763 False 1098.000000 1098 92.568000 1 767 1 chr3D.!!$F5 766
6 TraesCS3B01G580900 chr3D 603865951 603869277 3326 False 1081.200000 3509 91.698000 856 6376 5 chr3D.!!$F11 5520
7 TraesCS3B01G580900 chr3D 602427381 602432076 4695 False 1054.142857 2383 92.441857 856 6224 7 chr3D.!!$F9 5368
8 TraesCS3B01G580900 chr3D 602748938 602752885 3947 True 848.175000 3587 93.703500 856 7103 8 chr3D.!!$R1 6247
9 TraesCS3B01G580900 chr3D 602653181 602657303 4122 False 832.000000 1921 90.723200 844 5923 5 chr3D.!!$F10 5079
10 TraesCS3B01G580900 chr3D 568493740 568496834 3094 False 704.000000 1214 83.754000 955 6203 4 chr3D.!!$F8 5248
11 TraesCS3B01G580900 chr3D 530307863 530308455 592 False 276.000000 276 75.537000 57 649 1 chr3D.!!$F3 592
12 TraesCS3B01G580900 chrUn 276041469 276044795 3326 True 1081.200000 3509 91.513800 856 6376 5 chrUn.!!$R8 5520
13 TraesCS3B01G580900 chr5A 563251160 563252245 1085 False 782.000000 1057 92.796500 4132 5197 2 chr5A.!!$F3 1065
14 TraesCS3B01G580900 chr5A 31571204 31574600 3396 False 776.460000 2073 90.636800 856 6376 5 chr5A.!!$F2 5520
15 TraesCS3B01G580900 chr3A 578999448 579003213 3765 True 1063.500000 1074 96.581500 4132 4772 2 chr3A.!!$R4 640
16 TraesCS3B01G580900 chr3A 732098987 732100309 1322 False 927.500000 1729 94.080000 845 2218 2 chr3A.!!$F4 1373
17 TraesCS3B01G580900 chr3A 731990394 731996947 6553 True 764.142857 1548 90.287143 1 6224 7 chr3A.!!$R5 6223
18 TraesCS3B01G580900 chr3A 732073051 732078168 5117 False 691.400000 1474 93.420400 1 6203 5 chr3A.!!$F3 6202
19 TraesCS3B01G580900 chr3A 732427535 732428125 590 False 381.000000 381 78.583000 1618 2237 1 chr3A.!!$F2 619
20 TraesCS3B01G580900 chr7B 729236341 729237099 758 True 1173.000000 1173 94.744000 4132 4883 1 chr7B.!!$R2 751
21 TraesCS3B01G580900 chr7A 104638381 104639145 764 False 1074.000000 1074 92.318000 4132 4883 1 chr7A.!!$F1 751
22 TraesCS3B01G580900 chr1B 12817679 12818778 1099 True 853.000000 1070 95.482500 4132 5195 2 chr1B.!!$R2 1063
23 TraesCS3B01G580900 chr1B 181111087 181111689 602 False 230.000000 230 73.813000 59 663 1 chr1B.!!$F2 604
24 TraesCS3B01G580900 chr5B 639622226 639622865 639 True 1066.000000 1066 96.734000 4132 4772 1 chr5B.!!$R1 640
25 TraesCS3B01G580900 chr6B 124051904 124054592 2688 True 755.000000 756 97.834000 3244 3682 2 chr6B.!!$R5 438
26 TraesCS3B01G580900 chr6B 124013425 124015931 2506 True 753.000000 756 97.613500 3244 3682 2 chr6B.!!$R4 438

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
540 552 0.184211 ACACGGTAGGGGCAAACTTT 59.816 50.000 0.00 0.0 0.00 2.66 F
1091 1639 1.005037 AAGGCGCATCGTTGTCTGA 60.005 52.632 10.83 0.0 0.00 3.27 F
3073 9100 0.756294 TGACCGTGCCTTTCTTGAGA 59.244 50.000 0.00 0.0 0.00 3.27 F
3106 9133 0.035725 CAATCAGGCTCAGGTCAGCA 60.036 55.000 0.00 0.0 41.65 4.41 F
3747 9775 0.105039 GCAAGATCCCCTCCGTGTAG 59.895 60.000 0.00 0.0 0.00 2.74 F
5240 12683 0.105964 TGTGGAAGGTCTTGACCGTG 59.894 55.000 12.62 0.0 34.28 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1698 2350 3.973973 TCCATAGGGTACTTGGATTCCAG 59.026 47.826 5.36 3.33 34.65 3.86 R
3087 9114 0.035725 TGCTGACCTGAGCCTGATTG 60.036 55.000 0.00 0.00 38.28 2.67 R
5199 12642 1.134560 ACAGACGATAAAGGCGAGTCC 59.865 52.381 0.00 0.00 32.70 3.85 R
5233 12676 0.756294 TCTCAAGAAAGGCACGGTCA 59.244 50.000 0.00 0.00 0.00 4.02 R
5804 15174 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12 R
6574 16068 0.398522 AGGGTGCCGGATATGAGACA 60.399 55.000 5.05 0.00 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 0.951040 CGTTTGCGAGGGCTCTTTCT 60.951 55.000 0.00 0.00 41.33 2.52
147 150 5.752036 TCTTTGAATCACTGGATCTGAGT 57.248 39.130 0.00 0.00 31.88 3.41
184 188 3.382083 ACTCCAACTGTTCTTTTGGGT 57.618 42.857 0.66 0.00 42.35 4.51
253 258 5.104735 ACTCAAAGTAGCTATCCCCTTCAAG 60.105 44.000 0.00 0.22 0.00 3.02
343 348 4.339530 TCATGACGTCCCTCTTCTATCTTG 59.660 45.833 14.12 0.00 0.00 3.02
392 397 6.015940 ACCCAAGATCTCAACTTGAATTGAAC 60.016 38.462 0.00 0.00 44.92 3.18
436 448 4.461781 TGCCACTACTTCTACCTTGACTAC 59.538 45.833 0.00 0.00 0.00 2.73
513 525 5.049060 TGTTCCACTAATCCGTGTTTCAATG 60.049 40.000 0.00 0.00 33.07 2.82
540 552 0.184211 ACACGGTAGGGGCAAACTTT 59.816 50.000 0.00 0.00 0.00 2.66
572 586 1.454847 AAAGTTCCCACTGCCGCAA 60.455 52.632 0.00 0.00 31.60 4.85
576 590 1.896660 TTCCCACTGCCGCAACTTC 60.897 57.895 0.00 0.00 0.00 3.01
659 673 1.592064 CCCGCCAAAATGCTTTTTGT 58.408 45.000 26.75 1.13 46.73 2.83
699 713 2.885135 TACCGTCTTGACCTGTCCTA 57.115 50.000 0.00 0.00 0.00 2.94
714 728 4.141824 CCTGTCCTAGTTCTCTTGGGATTC 60.142 50.000 0.00 0.00 37.23 2.52
820 834 3.544834 CGAGCCATCATTGTTTGATCGAC 60.545 47.826 1.50 0.00 43.40 4.20
943 1436 2.537143 AGGATTACGGTCTGTGAACCT 58.463 47.619 0.00 0.00 37.15 3.50
976 1524 2.685364 CGTCACAACGGTTCCACTT 58.315 52.632 0.00 0.00 45.21 3.16
1091 1639 1.005037 AAGGCGCATCGTTGTCTGA 60.005 52.632 10.83 0.00 0.00 3.27
1154 1771 4.547367 GCCGTCCGGATCCTTGGG 62.547 72.222 7.81 3.80 37.50 4.12
1728 2380 0.837272 GTACCCTATGGAGCTTGCCA 59.163 55.000 0.00 0.00 43.23 4.92
2251 4261 7.510685 TCCCTGAGAGTTTATTATACTGATGCT 59.489 37.037 0.00 0.00 0.00 3.79
2330 7384 7.758528 ACGAGTACCATACTTTTTCTGTATGTC 59.241 37.037 11.36 3.83 43.21 3.06
2526 7677 6.918626 AGTATGAATATGACAGATGGAGTCG 58.081 40.000 0.00 0.00 38.83 4.18
2544 7695 5.005107 GGAGTCGGTACAAAGCGTTTTATAG 59.995 44.000 0.00 0.00 46.47 1.31
2907 8934 5.449107 ACATTGATTTGGATCTAGCATGC 57.551 39.130 10.51 10.51 33.28 4.06
2955 8982 2.938451 TCGCTTGCTCATTTAGATGGTG 59.062 45.455 0.00 0.00 33.93 4.17
3072 9099 1.532868 CTTGACCGTGCCTTTCTTGAG 59.467 52.381 0.00 0.00 0.00 3.02
3073 9100 0.756294 TGACCGTGCCTTTCTTGAGA 59.244 50.000 0.00 0.00 0.00 3.27
3074 9101 1.347707 TGACCGTGCCTTTCTTGAGAT 59.652 47.619 0.00 0.00 0.00 2.75
3075 9102 2.224523 TGACCGTGCCTTTCTTGAGATT 60.225 45.455 0.00 0.00 0.00 2.40
3076 9103 2.814336 GACCGTGCCTTTCTTGAGATTT 59.186 45.455 0.00 0.00 0.00 2.17
3077 9104 2.554032 ACCGTGCCTTTCTTGAGATTTG 59.446 45.455 0.00 0.00 0.00 2.32
3078 9105 2.095059 CCGTGCCTTTCTTGAGATTTGG 60.095 50.000 0.00 0.00 0.00 3.28
3079 9106 2.813754 CGTGCCTTTCTTGAGATTTGGA 59.186 45.455 0.00 0.00 0.00 3.53
3080 9107 3.253188 CGTGCCTTTCTTGAGATTTGGAA 59.747 43.478 0.00 0.00 0.00 3.53
3081 9108 4.614535 CGTGCCTTTCTTGAGATTTGGAAG 60.615 45.833 0.00 0.00 0.00 3.46
3082 9109 3.256631 TGCCTTTCTTGAGATTTGGAAGC 59.743 43.478 0.00 0.00 0.00 3.86
3083 9110 3.671702 GCCTTTCTTGAGATTTGGAAGCG 60.672 47.826 0.00 0.00 0.00 4.68
3084 9111 3.119708 CCTTTCTTGAGATTTGGAAGCGG 60.120 47.826 0.00 0.00 0.00 5.52
3085 9112 2.113860 TCTTGAGATTTGGAAGCGGG 57.886 50.000 0.00 0.00 0.00 6.13
3086 9113 1.351017 TCTTGAGATTTGGAAGCGGGT 59.649 47.619 0.00 0.00 0.00 5.28
3087 9114 1.740025 CTTGAGATTTGGAAGCGGGTC 59.260 52.381 0.00 0.00 0.00 4.46
3088 9115 0.690192 TGAGATTTGGAAGCGGGTCA 59.310 50.000 0.00 0.00 0.00 4.02
3089 9116 1.073125 TGAGATTTGGAAGCGGGTCAA 59.927 47.619 0.00 0.00 0.00 3.18
3090 9117 2.290896 TGAGATTTGGAAGCGGGTCAAT 60.291 45.455 0.00 0.00 0.00 2.57
3091 9118 2.356069 GAGATTTGGAAGCGGGTCAATC 59.644 50.000 0.00 0.00 0.00 2.67
3092 9119 2.091541 GATTTGGAAGCGGGTCAATCA 58.908 47.619 0.00 0.00 0.00 2.57
3093 9120 1.533625 TTTGGAAGCGGGTCAATCAG 58.466 50.000 0.00 0.00 0.00 2.90
3094 9121 0.322456 TTGGAAGCGGGTCAATCAGG 60.322 55.000 0.00 0.00 0.00 3.86
3095 9122 2.115291 GGAAGCGGGTCAATCAGGC 61.115 63.158 0.00 0.00 0.00 4.85
3096 9123 1.078143 GAAGCGGGTCAATCAGGCT 60.078 57.895 0.00 0.00 35.01 4.58
3097 9124 1.078143 AAGCGGGTCAATCAGGCTC 60.078 57.895 0.00 0.00 32.62 4.70
3098 9125 1.841302 AAGCGGGTCAATCAGGCTCA 61.841 55.000 0.00 0.00 32.62 4.26
3099 9126 1.817099 GCGGGTCAATCAGGCTCAG 60.817 63.158 0.00 0.00 0.00 3.35
3100 9127 1.153289 CGGGTCAATCAGGCTCAGG 60.153 63.158 0.00 0.00 0.00 3.86
3101 9128 1.903877 CGGGTCAATCAGGCTCAGGT 61.904 60.000 0.00 0.00 0.00 4.00
3102 9129 0.107459 GGGTCAATCAGGCTCAGGTC 60.107 60.000 0.00 0.00 0.00 3.85
3103 9130 0.615331 GGTCAATCAGGCTCAGGTCA 59.385 55.000 0.00 0.00 0.00 4.02
3104 9131 1.406614 GGTCAATCAGGCTCAGGTCAG 60.407 57.143 0.00 0.00 0.00 3.51
3105 9132 0.251354 TCAATCAGGCTCAGGTCAGC 59.749 55.000 0.00 0.00 38.84 4.26
3106 9133 0.035725 CAATCAGGCTCAGGTCAGCA 60.036 55.000 0.00 0.00 41.65 4.41
3107 9134 0.917533 AATCAGGCTCAGGTCAGCAT 59.082 50.000 0.00 0.00 41.65 3.79
3108 9135 0.917533 ATCAGGCTCAGGTCAGCATT 59.082 50.000 0.00 0.00 41.65 3.56
3109 9136 0.035725 TCAGGCTCAGGTCAGCATTG 60.036 55.000 0.00 0.00 41.65 2.82
3110 9137 0.322277 CAGGCTCAGGTCAGCATTGT 60.322 55.000 0.00 0.00 41.65 2.71
3111 9138 1.065926 CAGGCTCAGGTCAGCATTGTA 60.066 52.381 0.00 0.00 41.65 2.41
3112 9139 1.065854 AGGCTCAGGTCAGCATTGTAC 60.066 52.381 0.00 0.00 41.65 2.90
3113 9140 1.339055 GGCTCAGGTCAGCATTGTACA 60.339 52.381 0.00 0.00 41.65 2.90
3114 9141 2.636830 GCTCAGGTCAGCATTGTACAT 58.363 47.619 0.00 0.00 39.43 2.29
3115 9142 2.611292 GCTCAGGTCAGCATTGTACATC 59.389 50.000 0.00 0.00 39.43 3.06
3116 9143 3.865446 CTCAGGTCAGCATTGTACATCA 58.135 45.455 0.00 0.00 0.00 3.07
3117 9144 3.865446 TCAGGTCAGCATTGTACATCAG 58.135 45.455 0.00 0.00 0.00 2.90
3118 9145 3.515104 TCAGGTCAGCATTGTACATCAGA 59.485 43.478 0.00 0.00 0.00 3.27
3119 9146 4.020307 TCAGGTCAGCATTGTACATCAGAA 60.020 41.667 0.00 0.00 0.00 3.02
3120 9147 4.093998 CAGGTCAGCATTGTACATCAGAAC 59.906 45.833 0.00 0.00 0.00 3.01
3121 9148 4.019860 AGGTCAGCATTGTACATCAGAACT 60.020 41.667 0.00 0.00 0.00 3.01
3122 9149 5.187772 AGGTCAGCATTGTACATCAGAACTA 59.812 40.000 0.00 0.00 0.00 2.24
3123 9150 5.874810 GGTCAGCATTGTACATCAGAACTAA 59.125 40.000 0.00 0.00 0.00 2.24
3124 9151 6.183360 GGTCAGCATTGTACATCAGAACTAAC 60.183 42.308 0.00 0.00 0.00 2.34
3125 9152 6.591834 GTCAGCATTGTACATCAGAACTAACT 59.408 38.462 0.00 0.00 0.00 2.24
3126 9153 7.759886 GTCAGCATTGTACATCAGAACTAACTA 59.240 37.037 0.00 0.00 0.00 2.24
3127 9154 8.311109 TCAGCATTGTACATCAGAACTAACTAA 58.689 33.333 0.00 0.00 0.00 2.24
3128 9155 8.383619 CAGCATTGTACATCAGAACTAACTAAC 58.616 37.037 0.00 0.00 0.00 2.34
3129 9156 8.094548 AGCATTGTACATCAGAACTAACTAACA 58.905 33.333 0.00 0.00 0.00 2.41
3130 9157 8.717821 GCATTGTACATCAGAACTAACTAACAA 58.282 33.333 0.00 0.00 0.00 2.83
3132 9159 8.597662 TTGTACATCAGAACTAACTAACAACC 57.402 34.615 0.00 0.00 0.00 3.77
3133 9160 6.864685 TGTACATCAGAACTAACTAACAACCG 59.135 38.462 0.00 0.00 0.00 4.44
3134 9161 5.850614 ACATCAGAACTAACTAACAACCGT 58.149 37.500 0.00 0.00 0.00 4.83
3135 9162 6.285990 ACATCAGAACTAACTAACAACCGTT 58.714 36.000 0.00 0.00 39.24 4.44
3136 9163 6.764560 ACATCAGAACTAACTAACAACCGTTT 59.235 34.615 0.00 0.00 36.52 3.60
3137 9164 7.927629 ACATCAGAACTAACTAACAACCGTTTA 59.072 33.333 0.00 0.00 36.52 2.01
3138 9165 8.932791 CATCAGAACTAACTAACAACCGTTTAT 58.067 33.333 0.00 0.00 36.52 1.40
3140 9167 9.979578 TCAGAACTAACTAACAACCGTTTATAA 57.020 29.630 0.00 0.00 36.52 0.98
3164 9191 7.807977 ATTATTGATTAGGTTCGTCAATGCT 57.192 32.000 9.40 0.00 41.31 3.79
3165 9192 7.624360 TTATTGATTAGGTTCGTCAATGCTT 57.376 32.000 9.40 0.00 41.31 3.91
3166 9193 5.957842 TTGATTAGGTTCGTCAATGCTTT 57.042 34.783 0.00 0.00 0.00 3.51
3167 9194 5.545658 TGATTAGGTTCGTCAATGCTTTC 57.454 39.130 0.00 0.00 0.00 2.62
3168 9195 5.245531 TGATTAGGTTCGTCAATGCTTTCT 58.754 37.500 0.00 0.00 0.00 2.52
3169 9196 6.403049 TGATTAGGTTCGTCAATGCTTTCTA 58.597 36.000 0.00 0.00 0.00 2.10
3170 9197 6.876789 TGATTAGGTTCGTCAATGCTTTCTAA 59.123 34.615 0.00 0.00 0.00 2.10
3171 9198 6.476243 TTAGGTTCGTCAATGCTTTCTAAC 57.524 37.500 0.00 0.00 0.00 2.34
3172 9199 3.751698 AGGTTCGTCAATGCTTTCTAACC 59.248 43.478 0.00 0.00 36.27 2.85
3173 9200 3.119955 GGTTCGTCAATGCTTTCTAACCC 60.120 47.826 0.00 0.00 31.08 4.11
3174 9201 3.695830 TCGTCAATGCTTTCTAACCCT 57.304 42.857 0.00 0.00 0.00 4.34
3175 9202 3.334691 TCGTCAATGCTTTCTAACCCTG 58.665 45.455 0.00 0.00 0.00 4.45
3176 9203 3.074412 CGTCAATGCTTTCTAACCCTGT 58.926 45.455 0.00 0.00 0.00 4.00
3177 9204 4.020928 TCGTCAATGCTTTCTAACCCTGTA 60.021 41.667 0.00 0.00 0.00 2.74
3178 9205 4.876107 CGTCAATGCTTTCTAACCCTGTAT 59.124 41.667 0.00 0.00 0.00 2.29
3179 9206 6.046593 CGTCAATGCTTTCTAACCCTGTATA 58.953 40.000 0.00 0.00 0.00 1.47
3180 9207 6.706270 CGTCAATGCTTTCTAACCCTGTATAT 59.294 38.462 0.00 0.00 0.00 0.86
3181 9208 7.307396 CGTCAATGCTTTCTAACCCTGTATATG 60.307 40.741 0.00 0.00 0.00 1.78
3182 9209 6.486657 TCAATGCTTTCTAACCCTGTATATGC 59.513 38.462 0.00 0.00 0.00 3.14
3183 9210 5.630415 TGCTTTCTAACCCTGTATATGCT 57.370 39.130 0.00 0.00 0.00 3.79
3184 9211 6.001449 TGCTTTCTAACCCTGTATATGCTT 57.999 37.500 0.00 0.00 0.00 3.91
3185 9212 5.822519 TGCTTTCTAACCCTGTATATGCTTG 59.177 40.000 0.00 0.00 0.00 4.01
3186 9213 5.239525 GCTTTCTAACCCTGTATATGCTTGG 59.760 44.000 0.00 0.00 0.00 3.61
3187 9214 4.351874 TCTAACCCTGTATATGCTTGGC 57.648 45.455 0.00 0.00 0.00 4.52
3188 9215 1.967319 AACCCTGTATATGCTTGGCG 58.033 50.000 0.00 0.00 0.00 5.69
3189 9216 1.128200 ACCCTGTATATGCTTGGCGA 58.872 50.000 0.00 0.00 0.00 5.54
3190 9217 1.699634 ACCCTGTATATGCTTGGCGAT 59.300 47.619 0.00 0.00 0.00 4.58
3191 9218 2.079158 CCCTGTATATGCTTGGCGATG 58.921 52.381 0.00 0.00 0.00 3.84
3192 9219 2.079158 CCTGTATATGCTTGGCGATGG 58.921 52.381 0.00 0.00 0.00 3.51
3193 9220 2.550855 CCTGTATATGCTTGGCGATGGT 60.551 50.000 0.00 0.00 0.00 3.55
3194 9221 2.481568 CTGTATATGCTTGGCGATGGTG 59.518 50.000 0.00 0.00 0.00 4.17
3195 9222 2.158827 TGTATATGCTTGGCGATGGTGT 60.159 45.455 0.00 0.00 0.00 4.16
3196 9223 2.057137 ATATGCTTGGCGATGGTGTT 57.943 45.000 0.00 0.00 0.00 3.32
3197 9224 1.093972 TATGCTTGGCGATGGTGTTG 58.906 50.000 0.00 0.00 0.00 3.33
3198 9225 0.895100 ATGCTTGGCGATGGTGTTGT 60.895 50.000 0.00 0.00 0.00 3.32
3199 9226 1.210155 GCTTGGCGATGGTGTTGTC 59.790 57.895 0.00 0.00 0.00 3.18
3200 9227 1.237285 GCTTGGCGATGGTGTTGTCT 61.237 55.000 0.00 0.00 0.00 3.41
3201 9228 1.238439 CTTGGCGATGGTGTTGTCTT 58.762 50.000 0.00 0.00 0.00 3.01
3202 9229 1.197721 CTTGGCGATGGTGTTGTCTTC 59.802 52.381 0.00 0.00 0.00 2.87
3203 9230 0.396435 TGGCGATGGTGTTGTCTTCT 59.604 50.000 0.00 0.00 0.00 2.85
3204 9231 1.202758 TGGCGATGGTGTTGTCTTCTT 60.203 47.619 0.00 0.00 0.00 2.52
3205 9232 1.880027 GGCGATGGTGTTGTCTTCTTT 59.120 47.619 0.00 0.00 0.00 2.52
3206 9233 2.350772 GGCGATGGTGTTGTCTTCTTTG 60.351 50.000 0.00 0.00 0.00 2.77
3207 9234 2.290641 GCGATGGTGTTGTCTTCTTTGT 59.709 45.455 0.00 0.00 0.00 2.83
3208 9235 3.243068 GCGATGGTGTTGTCTTCTTTGTT 60.243 43.478 0.00 0.00 0.00 2.83
3209 9236 4.282068 CGATGGTGTTGTCTTCTTTGTTG 58.718 43.478 0.00 0.00 0.00 3.33
3210 9237 4.610945 GATGGTGTTGTCTTCTTTGTTGG 58.389 43.478 0.00 0.00 0.00 3.77
3211 9238 3.691575 TGGTGTTGTCTTCTTTGTTGGA 58.308 40.909 0.00 0.00 0.00 3.53
3212 9239 4.082845 TGGTGTTGTCTTCTTTGTTGGAA 58.917 39.130 0.00 0.00 0.00 3.53
3213 9240 4.524714 TGGTGTTGTCTTCTTTGTTGGAAA 59.475 37.500 0.00 0.00 0.00 3.13
3214 9241 5.011125 TGGTGTTGTCTTCTTTGTTGGAAAA 59.989 36.000 0.00 0.00 0.00 2.29
3215 9242 5.347635 GGTGTTGTCTTCTTTGTTGGAAAAC 59.652 40.000 0.00 0.00 0.00 2.43
3216 9243 6.156519 GTGTTGTCTTCTTTGTTGGAAAACT 58.843 36.000 0.00 0.00 0.00 2.66
3217 9244 6.645003 GTGTTGTCTTCTTTGTTGGAAAACTT 59.355 34.615 0.00 0.00 0.00 2.66
3218 9245 6.644592 TGTTGTCTTCTTTGTTGGAAAACTTG 59.355 34.615 0.00 0.00 0.00 3.16
3219 9246 6.339587 TGTCTTCTTTGTTGGAAAACTTGT 57.660 33.333 0.00 0.00 0.00 3.16
3220 9247 7.455641 TGTCTTCTTTGTTGGAAAACTTGTA 57.544 32.000 0.00 0.00 0.00 2.41
3221 9248 7.535139 TGTCTTCTTTGTTGGAAAACTTGTAG 58.465 34.615 0.00 0.00 0.00 2.74
3222 9249 7.392113 TGTCTTCTTTGTTGGAAAACTTGTAGA 59.608 33.333 0.00 0.00 0.00 2.59
3223 9250 8.406297 GTCTTCTTTGTTGGAAAACTTGTAGAT 58.594 33.333 0.00 0.00 0.00 1.98
3224 9251 8.405531 TCTTCTTTGTTGGAAAACTTGTAGATG 58.594 33.333 0.00 0.00 0.00 2.90
3225 9252 7.639113 TCTTTGTTGGAAAACTTGTAGATGT 57.361 32.000 0.00 0.00 0.00 3.06
3226 9253 7.479980 TCTTTGTTGGAAAACTTGTAGATGTG 58.520 34.615 0.00 0.00 0.00 3.21
3227 9254 6.767524 TTGTTGGAAAACTTGTAGATGTGT 57.232 33.333 0.00 0.00 0.00 3.72
3228 9255 6.767524 TGTTGGAAAACTTGTAGATGTGTT 57.232 33.333 0.00 0.00 0.00 3.32
3229 9256 7.164230 TGTTGGAAAACTTGTAGATGTGTTT 57.836 32.000 0.00 0.00 34.59 2.83
3230 9257 7.254852 TGTTGGAAAACTTGTAGATGTGTTTC 58.745 34.615 0.00 0.00 32.35 2.78
3231 9258 7.094162 TGTTGGAAAACTTGTAGATGTGTTTCA 60.094 33.333 0.00 2.57 32.35 2.69
3232 9259 7.026631 TGGAAAACTTGTAGATGTGTTTCAG 57.973 36.000 0.00 0.00 32.35 3.02
3233 9260 6.826231 TGGAAAACTTGTAGATGTGTTTCAGA 59.174 34.615 0.00 0.00 32.35 3.27
3234 9261 7.012327 TGGAAAACTTGTAGATGTGTTTCAGAG 59.988 37.037 0.00 0.00 32.35 3.35
3235 9262 7.226720 GGAAAACTTGTAGATGTGTTTCAGAGA 59.773 37.037 0.00 0.00 32.35 3.10
3236 9263 8.682936 AAAACTTGTAGATGTGTTTCAGAGAT 57.317 30.769 0.00 0.00 32.35 2.75
3237 9264 7.664082 AACTTGTAGATGTGTTTCAGAGATG 57.336 36.000 0.00 0.00 0.00 2.90
3238 9265 5.641209 ACTTGTAGATGTGTTTCAGAGATGC 59.359 40.000 0.00 0.00 0.00 3.91
3239 9266 5.411831 TGTAGATGTGTTTCAGAGATGCT 57.588 39.130 0.00 0.00 0.00 3.79
3240 9267 5.414360 TGTAGATGTGTTTCAGAGATGCTC 58.586 41.667 0.00 0.00 0.00 4.26
3241 9268 3.871485 AGATGTGTTTCAGAGATGCTCC 58.129 45.455 0.00 0.00 0.00 4.70
3242 9269 2.479566 TGTGTTTCAGAGATGCTCCC 57.520 50.000 0.00 0.00 0.00 4.30
3243 9270 1.003580 TGTGTTTCAGAGATGCTCCCC 59.996 52.381 0.00 0.00 0.00 4.81
3244 9271 1.280421 GTGTTTCAGAGATGCTCCCCT 59.720 52.381 0.00 0.00 0.00 4.79
3245 9272 1.556911 TGTTTCAGAGATGCTCCCCTC 59.443 52.381 0.00 0.00 0.00 4.30
3246 9273 1.556911 GTTTCAGAGATGCTCCCCTCA 59.443 52.381 0.00 0.00 32.07 3.86
3247 9274 1.198713 TTCAGAGATGCTCCCCTCAC 58.801 55.000 0.00 0.00 32.07 3.51
3438 9465 6.039616 GTGATGGAGAAGTATCTGAACACTC 58.960 44.000 0.00 0.00 35.54 3.51
3441 9468 3.133183 GGAGAAGTATCTGAACACTCCCC 59.867 52.174 0.00 7.74 38.30 4.81
3675 9703 0.532573 CGGAGTGGATGTAGCTGTGT 59.467 55.000 0.00 0.00 0.00 3.72
3679 9707 3.056107 GGAGTGGATGTAGCTGTGTGTTA 60.056 47.826 0.00 0.00 0.00 2.41
3682 9710 2.903784 TGGATGTAGCTGTGTGTTAGGT 59.096 45.455 0.00 0.00 0.00 3.08
3683 9711 3.056107 TGGATGTAGCTGTGTGTTAGGTC 60.056 47.826 0.00 0.00 0.00 3.85
3684 9712 3.056107 GGATGTAGCTGTGTGTTAGGTCA 60.056 47.826 0.00 0.00 0.00 4.02
3685 9713 3.660501 TGTAGCTGTGTGTTAGGTCAG 57.339 47.619 0.00 0.00 0.00 3.51
3687 9715 2.544726 GCTGTGTGTTAGGTCAGCC 58.455 57.895 4.90 0.00 44.84 4.85
3688 9716 0.955919 GCTGTGTGTTAGGTCAGCCC 60.956 60.000 4.90 0.00 44.84 5.19
3689 9717 0.396435 CTGTGTGTTAGGTCAGCCCA 59.604 55.000 0.00 0.00 34.66 5.36
3690 9718 1.003580 CTGTGTGTTAGGTCAGCCCAT 59.996 52.381 0.00 0.00 34.66 4.00
3691 9719 2.236146 CTGTGTGTTAGGTCAGCCCATA 59.764 50.000 0.00 0.00 34.66 2.74
3692 9720 2.236146 TGTGTGTTAGGTCAGCCCATAG 59.764 50.000 0.00 0.00 34.66 2.23
3693 9721 1.837439 TGTGTTAGGTCAGCCCATAGG 59.163 52.381 0.00 0.00 34.66 2.57
3694 9722 2.116238 GTGTTAGGTCAGCCCATAGGA 58.884 52.381 0.00 0.00 34.66 2.94
3695 9723 2.504175 GTGTTAGGTCAGCCCATAGGAA 59.496 50.000 0.00 0.00 34.66 3.36
3696 9724 2.504175 TGTTAGGTCAGCCCATAGGAAC 59.496 50.000 0.00 0.00 34.66 3.62
3697 9725 2.504175 GTTAGGTCAGCCCATAGGAACA 59.496 50.000 0.00 0.00 34.66 3.18
3698 9726 0.912486 AGGTCAGCCCATAGGAACAC 59.088 55.000 0.00 0.00 34.66 3.32
3699 9727 0.912486 GGTCAGCCCATAGGAACACT 59.088 55.000 0.00 0.00 33.47 3.55
3700 9728 1.134371 GGTCAGCCCATAGGAACACTC 60.134 57.143 0.00 0.00 33.47 3.51
3701 9729 1.834263 GTCAGCCCATAGGAACACTCT 59.166 52.381 0.00 0.00 33.47 3.24
3702 9730 1.833630 TCAGCCCATAGGAACACTCTG 59.166 52.381 0.00 0.00 33.47 3.35
3703 9731 1.134280 CAGCCCATAGGAACACTCTGG 60.134 57.143 0.00 0.00 41.78 3.86
3704 9732 1.204146 GCCCATAGGAACACTCTGGA 58.796 55.000 0.87 0.00 44.14 3.86
3705 9733 1.139853 GCCCATAGGAACACTCTGGAG 59.860 57.143 0.87 0.00 44.14 3.86
3706 9734 1.139853 CCCATAGGAACACTCTGGAGC 59.860 57.143 0.87 0.00 44.14 4.70
3707 9735 2.114616 CCATAGGAACACTCTGGAGCT 58.885 52.381 0.00 0.00 44.14 4.09
3708 9736 3.300388 CCATAGGAACACTCTGGAGCTA 58.700 50.000 0.00 0.00 44.14 3.32
3709 9737 3.068873 CCATAGGAACACTCTGGAGCTAC 59.931 52.174 0.00 0.00 44.14 3.58
3710 9738 2.310779 AGGAACACTCTGGAGCTACA 57.689 50.000 0.00 0.00 0.00 2.74
3711 9739 2.826488 AGGAACACTCTGGAGCTACAT 58.174 47.619 0.00 0.00 0.00 2.29
3712 9740 2.763448 AGGAACACTCTGGAGCTACATC 59.237 50.000 0.00 0.00 0.00 3.06
3713 9741 2.159028 GGAACACTCTGGAGCTACATCC 60.159 54.545 0.00 0.00 40.03 3.51
3714 9742 1.107114 ACACTCTGGAGCTACATCCG 58.893 55.000 0.00 0.00 42.77 4.18
3715 9743 0.387202 CACTCTGGAGCTACATCCGG 59.613 60.000 0.00 0.00 45.74 5.14
3716 9744 0.757188 ACTCTGGAGCTACATCCGGG 60.757 60.000 0.00 0.00 44.66 5.73
3717 9745 2.093537 CTCTGGAGCTACATCCGGGC 62.094 65.000 0.00 0.00 44.66 6.13
3718 9746 3.161450 TGGAGCTACATCCGGGCC 61.161 66.667 0.00 0.00 42.77 5.80
3719 9747 3.161450 GGAGCTACATCCGGGCCA 61.161 66.667 4.39 0.00 0.00 5.36
3720 9748 2.423446 GAGCTACATCCGGGCCAG 59.577 66.667 4.39 0.00 0.00 4.85
3721 9749 2.041922 AGCTACATCCGGGCCAGA 60.042 61.111 4.39 0.00 0.00 3.86
3722 9750 2.109181 GCTACATCCGGGCCAGAC 59.891 66.667 4.39 0.00 0.00 3.51
3723 9751 2.822399 CTACATCCGGGCCAGACC 59.178 66.667 4.39 0.00 37.93 3.85
3732 9760 2.674380 GGCCAGACCCACAGCAAG 60.674 66.667 0.00 0.00 0.00 4.01
3733 9761 2.431683 GCCAGACCCACAGCAAGA 59.568 61.111 0.00 0.00 0.00 3.02
3734 9762 1.001641 GCCAGACCCACAGCAAGAT 60.002 57.895 0.00 0.00 0.00 2.40
3735 9763 1.028868 GCCAGACCCACAGCAAGATC 61.029 60.000 0.00 0.00 0.00 2.75
3736 9764 0.393537 CCAGACCCACAGCAAGATCC 60.394 60.000 0.00 0.00 0.00 3.36
3737 9765 0.393537 CAGACCCACAGCAAGATCCC 60.394 60.000 0.00 0.00 0.00 3.85
3738 9766 1.077429 GACCCACAGCAAGATCCCC 60.077 63.158 0.00 0.00 0.00 4.81
3739 9767 1.542375 ACCCACAGCAAGATCCCCT 60.542 57.895 0.00 0.00 0.00 4.79
3740 9768 1.225704 CCCACAGCAAGATCCCCTC 59.774 63.158 0.00 0.00 0.00 4.30
3741 9769 1.225704 CCACAGCAAGATCCCCTCC 59.774 63.158 0.00 0.00 0.00 4.30
3742 9770 1.153289 CACAGCAAGATCCCCTCCG 60.153 63.158 0.00 0.00 0.00 4.63
3743 9771 1.613630 ACAGCAAGATCCCCTCCGT 60.614 57.895 0.00 0.00 0.00 4.69
3744 9772 1.153289 CAGCAAGATCCCCTCCGTG 60.153 63.158 0.00 0.00 0.00 4.94
3745 9773 1.613630 AGCAAGATCCCCTCCGTGT 60.614 57.895 0.00 0.00 0.00 4.49
3746 9774 0.325296 AGCAAGATCCCCTCCGTGTA 60.325 55.000 0.00 0.00 0.00 2.90
3747 9775 0.105039 GCAAGATCCCCTCCGTGTAG 59.895 60.000 0.00 0.00 0.00 2.74
3748 9776 1.776662 CAAGATCCCCTCCGTGTAGA 58.223 55.000 0.00 0.00 0.00 2.59
3749 9777 1.409427 CAAGATCCCCTCCGTGTAGAC 59.591 57.143 0.00 0.00 0.00 2.59
3750 9778 0.106116 AGATCCCCTCCGTGTAGACC 60.106 60.000 0.00 0.00 0.00 3.85
3751 9779 0.106116 GATCCCCTCCGTGTAGACCT 60.106 60.000 0.00 0.00 0.00 3.85
3752 9780 0.397254 ATCCCCTCCGTGTAGACCTG 60.397 60.000 0.00 0.00 0.00 4.00
3753 9781 1.000019 CCCCTCCGTGTAGACCTGA 60.000 63.158 0.00 0.00 0.00 3.86
3754 9782 1.321074 CCCCTCCGTGTAGACCTGAC 61.321 65.000 0.00 0.00 0.00 3.51
3755 9783 1.654954 CCCTCCGTGTAGACCTGACG 61.655 65.000 0.00 0.00 0.00 4.35
3756 9784 1.136984 CTCCGTGTAGACCTGACGC 59.863 63.158 0.00 0.00 0.00 5.19
3758 9786 2.559840 CGTGTAGACCTGACGCGT 59.440 61.111 13.85 13.85 43.86 6.01
3759 9787 1.511464 CGTGTAGACCTGACGCGTC 60.511 63.158 31.66 31.66 43.86 5.19
3760 9788 1.154073 GTGTAGACCTGACGCGTCC 60.154 63.158 34.34 19.80 0.00 4.79
3761 9789 2.099831 GTAGACCTGACGCGTCCG 59.900 66.667 34.34 28.10 41.14 4.79
4176 10204 1.301716 GTGCCGCCTCTTCAGACAA 60.302 57.895 0.00 0.00 0.00 3.18
4374 10402 1.202463 CCATAGGAACACTCTGGAGCG 60.202 57.143 0.00 0.00 44.14 5.03
4422 10450 1.676635 CCTCCGTGTAGACCCGACA 60.677 63.158 0.00 0.00 0.00 4.35
4890 11332 0.179076 CTGCCACAGATATGCCGACA 60.179 55.000 0.00 0.00 32.44 4.35
5092 11534 1.557651 GACGGCTTTTCTACGCCTAG 58.442 55.000 0.00 0.00 44.11 3.02
5200 12643 3.815401 CAGTTTTTCTGGTAGTGTGGAGG 59.185 47.826 0.00 0.00 40.23 4.30
5201 12644 3.714798 AGTTTTTCTGGTAGTGTGGAGGA 59.285 43.478 0.00 0.00 0.00 3.71
5202 12645 3.764237 TTTTCTGGTAGTGTGGAGGAC 57.236 47.619 0.00 0.00 0.00 3.85
5203 12646 2.696526 TTCTGGTAGTGTGGAGGACT 57.303 50.000 0.00 0.00 0.00 3.85
5204 12647 2.217510 TCTGGTAGTGTGGAGGACTC 57.782 55.000 0.00 0.00 0.00 3.36
5205 12648 0.811915 CTGGTAGTGTGGAGGACTCG 59.188 60.000 0.00 0.00 0.00 4.18
5207 12650 1.511768 GTAGTGTGGAGGACTCGCC 59.488 63.158 0.00 0.00 0.00 5.54
5218 12661 1.841450 GGACTCGCCTTTATCGTCTG 58.159 55.000 0.00 0.00 0.00 3.51
5219 12662 1.134560 GGACTCGCCTTTATCGTCTGT 59.865 52.381 0.00 0.00 0.00 3.41
5221 12664 3.251571 GACTCGCCTTTATCGTCTGTTT 58.748 45.455 0.00 0.00 0.00 2.83
5222 12665 2.993899 ACTCGCCTTTATCGTCTGTTTG 59.006 45.455 0.00 0.00 0.00 2.93
5223 12666 2.993899 CTCGCCTTTATCGTCTGTTTGT 59.006 45.455 0.00 0.00 0.00 2.83
5224 12667 2.734606 TCGCCTTTATCGTCTGTTTGTG 59.265 45.455 0.00 0.00 0.00 3.33
5226 12669 3.071479 GCCTTTATCGTCTGTTTGTGGA 58.929 45.455 0.00 0.00 0.00 4.02
5229 12672 4.154195 CCTTTATCGTCTGTTTGTGGAAGG 59.846 45.833 0.00 0.00 0.00 3.46
5230 12673 2.930826 ATCGTCTGTTTGTGGAAGGT 57.069 45.000 0.00 0.00 0.00 3.50
5231 12674 2.234300 TCGTCTGTTTGTGGAAGGTC 57.766 50.000 0.00 0.00 0.00 3.85
5232 12675 1.760613 TCGTCTGTTTGTGGAAGGTCT 59.239 47.619 0.00 0.00 0.00 3.85
5233 12676 2.169769 TCGTCTGTTTGTGGAAGGTCTT 59.830 45.455 0.00 0.00 0.00 3.01
5234 12677 2.287915 CGTCTGTTTGTGGAAGGTCTTG 59.712 50.000 0.00 0.00 0.00 3.02
5235 12678 3.541632 GTCTGTTTGTGGAAGGTCTTGA 58.458 45.455 0.00 0.00 0.00 3.02
5236 12679 3.312697 GTCTGTTTGTGGAAGGTCTTGAC 59.687 47.826 0.00 0.00 0.00 3.18
5237 12680 2.618709 CTGTTTGTGGAAGGTCTTGACC 59.381 50.000 11.59 11.59 0.00 4.02
5238 12681 1.602377 GTTTGTGGAAGGTCTTGACCG 59.398 52.381 13.41 0.00 34.28 4.79
5240 12683 0.105964 TGTGGAAGGTCTTGACCGTG 59.894 55.000 12.62 0.00 34.28 4.94
5241 12684 1.070786 TGGAAGGTCTTGACCGTGC 59.929 57.895 17.15 17.15 34.28 5.34
5242 12685 1.671379 GGAAGGTCTTGACCGTGCC 60.671 63.158 12.62 11.63 34.28 5.01
5243 12686 1.371558 GAAGGTCTTGACCGTGCCT 59.628 57.895 12.62 0.00 34.28 4.75
5245 12688 0.182775 AAGGTCTTGACCGTGCCTTT 59.817 50.000 13.41 0.00 36.24 3.11
5249 12692 1.264288 GTCTTGACCGTGCCTTTCTTG 59.736 52.381 0.00 0.00 0.00 3.02
5250 12693 1.140052 TCTTGACCGTGCCTTTCTTGA 59.860 47.619 0.00 0.00 0.00 3.02
5542 14809 6.923508 GGTTTCCTTTTTGTTCATAGGAGTTG 59.076 38.462 0.00 0.00 38.02 3.16
5614 14885 4.313020 AATCATCTTCCCTTGCAGTTCT 57.687 40.909 0.00 0.00 0.00 3.01
5694 14965 4.730949 AGCAATCCATTGGAATCTGTTG 57.269 40.909 9.98 10.22 38.21 3.33
5704 15074 9.778741 TCCATTGGAATCTGTTGTTATATACTC 57.221 33.333 1.94 0.00 0.00 2.59
5705 15075 9.003658 CCATTGGAATCTGTTGTTATATACTCC 57.996 37.037 0.00 0.00 0.00 3.85
5706 15076 9.003658 CATTGGAATCTGTTGTTATATACTCCC 57.996 37.037 0.00 0.00 0.00 4.30
5707 15077 7.931015 TGGAATCTGTTGTTATATACTCCCT 57.069 36.000 0.00 0.00 0.00 4.20
5708 15078 7.963532 TGGAATCTGTTGTTATATACTCCCTC 58.036 38.462 0.00 0.00 0.00 4.30
5709 15079 7.016268 TGGAATCTGTTGTTATATACTCCCTCC 59.984 40.741 0.00 0.00 0.00 4.30
5710 15080 6.591750 ATCTGTTGTTATATACTCCCTCCG 57.408 41.667 0.00 0.00 0.00 4.63
5712 15082 5.533903 TCTGTTGTTATATACTCCCTCCGTC 59.466 44.000 0.00 0.00 0.00 4.79
5714 15084 3.415212 TGTTATATACTCCCTCCGTCCG 58.585 50.000 0.00 0.00 0.00 4.79
5715 15085 3.072915 TGTTATATACTCCCTCCGTCCGA 59.927 47.826 0.00 0.00 0.00 4.55
5718 15088 1.856629 ATACTCCCTCCGTCCGAAAA 58.143 50.000 0.00 0.00 0.00 2.29
5719 15089 1.631405 TACTCCCTCCGTCCGAAAAA 58.369 50.000 0.00 0.00 0.00 1.94
5741 15111 8.558973 AAAAACTTGTCATCAAAATGGACAAA 57.441 26.923 7.70 0.00 34.98 2.83
5742 15112 8.558973 AAAACTTGTCATCAAAATGGACAAAA 57.441 26.923 7.70 0.00 34.98 2.44
5743 15113 8.558973 AAACTTGTCATCAAAATGGACAAAAA 57.441 26.923 7.70 0.00 34.98 1.94
5769 15139 8.849543 AGGGGTGTATCTAGAACTAAAATACA 57.150 34.615 0.00 0.00 32.07 2.29
5770 15140 9.448587 AGGGGTGTATCTAGAACTAAAATACAT 57.551 33.333 0.00 3.35 35.81 2.29
5771 15141 9.708092 GGGGTGTATCTAGAACTAAAATACATC 57.292 37.037 0.00 13.73 35.81 3.06
5814 15184 9.801873 ATTTATTTTGATGACAAGTATTTCCGG 57.198 29.630 0.00 0.00 37.32 5.14
5815 15185 8.568676 TTATTTTGATGACAAGTATTTCCGGA 57.431 30.769 0.00 0.00 37.32 5.14
5816 15186 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
5817 15187 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
5818 15188 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
5819 15189 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
5820 15190 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
5821 15191 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
5822 15192 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
5823 15193 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
5824 15194 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
5825 15195 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
5826 15196 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
5827 15197 0.032813 TTTCCGGACGGAGGGAGTAT 60.033 55.000 13.64 0.00 46.06 2.12
5828 15198 0.846015 TTCCGGACGGAGGGAGTATA 59.154 55.000 13.64 0.00 46.06 1.47
5829 15199 0.846015 TCCGGACGGAGGGAGTATAA 59.154 55.000 9.76 0.00 39.76 0.98
5830 15200 1.426598 TCCGGACGGAGGGAGTATAAT 59.573 52.381 9.76 0.00 39.76 1.28
5831 15201 1.817447 CCGGACGGAGGGAGTATAATC 59.183 57.143 4.40 0.00 37.50 1.75
5832 15202 2.511659 CGGACGGAGGGAGTATAATCA 58.488 52.381 2.18 0.00 0.00 2.57
5833 15203 3.090037 CGGACGGAGGGAGTATAATCAT 58.910 50.000 2.18 0.00 0.00 2.45
6087 15521 4.164258 GGAATCATTCCCAGGGCG 57.836 61.111 4.89 0.00 44.30 6.13
6150 15588 1.545582 CCGTGGTGATCTTTTGGCATT 59.454 47.619 0.00 0.00 0.00 3.56
6153 15591 4.142182 CCGTGGTGATCTTTTGGCATTAAT 60.142 41.667 0.00 0.00 0.00 1.40
6154 15592 5.410067 CGTGGTGATCTTTTGGCATTAATT 58.590 37.500 0.00 0.00 0.00 1.40
6156 15594 6.692681 CGTGGTGATCTTTTGGCATTAATTAG 59.307 38.462 0.00 0.00 0.00 1.73
6157 15595 7.415095 CGTGGTGATCTTTTGGCATTAATTAGA 60.415 37.037 0.00 0.00 0.00 2.10
6261 15705 5.277974 CCACGATATCATTTGATGTGGTTCC 60.278 44.000 15.40 0.00 39.42 3.62
6347 15791 8.993424 TGCTAAAGAAGTAAAGATCCCTAGATT 58.007 33.333 0.00 0.00 30.90 2.40
6414 15908 3.879892 GAGTCACCATTTAGGGCTCAATC 59.120 47.826 0.00 0.00 43.89 2.67
6415 15909 3.266772 AGTCACCATTTAGGGCTCAATCA 59.733 43.478 0.00 0.00 43.89 2.57
6416 15910 4.016444 GTCACCATTTAGGGCTCAATCAA 58.984 43.478 0.00 0.00 43.89 2.57
6417 15911 4.646492 GTCACCATTTAGGGCTCAATCAAT 59.354 41.667 0.00 0.00 43.89 2.57
6433 15927 4.608948 ATCAATACCCTAGAAAGAGCCG 57.391 45.455 0.00 0.00 0.00 5.52
6545 16039 7.031372 GCACCCTATATGCATACAAATTCATG 58.969 38.462 8.99 2.10 42.88 3.07
6546 16040 7.031372 CACCCTATATGCATACAAATTCATGC 58.969 38.462 8.99 10.96 46.21 4.06
6557 16051 9.681692 GCATACAAATTCATGCAATATCTGTAA 57.318 29.630 12.35 0.00 45.51 2.41
6561 16055 8.959548 ACAAATTCATGCAATATCTGTAACAGA 58.040 29.630 0.00 0.00 44.99 3.41
6562 16056 9.229784 CAAATTCATGCAATATCTGTAACAGAC 57.770 33.333 0.00 0.00 43.63 3.51
6563 16057 8.510243 AATTCATGCAATATCTGTAACAGACA 57.490 30.769 0.00 0.00 43.63 3.41
6564 16058 8.687292 ATTCATGCAATATCTGTAACAGACAT 57.313 30.769 0.00 0.00 43.63 3.06
6565 16059 9.783081 ATTCATGCAATATCTGTAACAGACATA 57.217 29.630 0.00 0.00 43.63 2.29
6566 16060 9.783081 TTCATGCAATATCTGTAACAGACATAT 57.217 29.630 0.00 0.00 43.63 1.78
6575 16069 8.818141 ATCTGTAACAGACATATAAACCGATG 57.182 34.615 0.00 0.00 43.63 3.84
6576 16070 7.778083 TCTGTAACAGACATATAAACCGATGT 58.222 34.615 0.00 0.00 37.45 3.06
6585 16079 8.635877 GACATATAAACCGATGTCTCATATCC 57.364 38.462 7.57 0.00 45.60 2.59
6586 16080 7.258441 ACATATAAACCGATGTCTCATATCCG 58.742 38.462 0.00 0.00 30.32 4.18
6587 16081 3.386768 AAACCGATGTCTCATATCCGG 57.613 47.619 0.00 0.00 0.00 5.14
6588 16082 0.603569 ACCGATGTCTCATATCCGGC 59.396 55.000 0.00 0.00 0.00 6.13
6589 16083 0.603065 CCGATGTCTCATATCCGGCA 59.397 55.000 0.00 0.00 0.00 5.69
6590 16084 1.670087 CCGATGTCTCATATCCGGCAC 60.670 57.143 0.00 0.00 0.00 5.01
6591 16085 1.670087 CGATGTCTCATATCCGGCACC 60.670 57.143 0.00 0.00 0.00 5.01
6592 16086 0.687354 ATGTCTCATATCCGGCACCC 59.313 55.000 0.00 0.00 0.00 4.61
6593 16087 0.398522 TGTCTCATATCCGGCACCCT 60.399 55.000 0.00 0.00 0.00 4.34
6594 16088 1.133294 TGTCTCATATCCGGCACCCTA 60.133 52.381 0.00 0.00 0.00 3.53
6595 16089 2.180276 GTCTCATATCCGGCACCCTAT 58.820 52.381 0.00 0.00 0.00 2.57
6596 16090 3.245479 TGTCTCATATCCGGCACCCTATA 60.245 47.826 0.00 0.00 0.00 1.31
6597 16091 3.961408 GTCTCATATCCGGCACCCTATAT 59.039 47.826 0.00 0.00 0.00 0.86
6598 16092 3.960755 TCTCATATCCGGCACCCTATATG 59.039 47.826 10.79 10.79 33.06 1.78
6599 16093 2.434336 TCATATCCGGCACCCTATATGC 59.566 50.000 11.79 0.00 42.62 3.14
6600 16094 1.945580 TATCCGGCACCCTATATGCA 58.054 50.000 0.00 0.00 45.27 3.96
6601 16095 1.289160 ATCCGGCACCCTATATGCAT 58.711 50.000 3.79 3.79 45.27 3.96
6602 16096 1.945580 TCCGGCACCCTATATGCATA 58.054 50.000 9.27 9.27 45.27 3.14
6603 16097 1.553248 TCCGGCACCCTATATGCATAC 59.447 52.381 8.99 0.00 45.27 2.39
6604 16098 1.277842 CCGGCACCCTATATGCATACA 59.722 52.381 8.99 0.00 45.27 2.29
6605 16099 2.290008 CCGGCACCCTATATGCATACAA 60.290 50.000 8.99 0.00 45.27 2.41
6606 16100 3.407698 CGGCACCCTATATGCATACAAA 58.592 45.455 8.99 0.00 45.27 2.83
6607 16101 4.009675 CGGCACCCTATATGCATACAAAT 58.990 43.478 8.99 0.00 45.27 2.32
6608 16102 4.458989 CGGCACCCTATATGCATACAAATT 59.541 41.667 8.99 0.00 45.27 1.82
6609 16103 5.391950 CGGCACCCTATATGCATACAAATTC 60.392 44.000 8.99 0.00 45.27 2.17
6610 16104 5.476599 GGCACCCTATATGCATACAAATTCA 59.523 40.000 8.99 0.00 45.27 2.57
6611 16105 6.153340 GGCACCCTATATGCATACAAATTCAT 59.847 38.462 8.99 0.00 45.27 2.57
6612 16106 7.031372 GCACCCTATATGCATACAAATTCATG 58.969 38.462 8.99 2.10 42.88 3.07
6613 16107 7.031372 CACCCTATATGCATACAAATTCATGC 58.969 38.462 8.99 10.96 46.21 4.06
6624 16118 9.681692 GCATACAAATTCATGCAATATCTGTAA 57.318 29.630 12.35 0.00 45.51 2.41
6628 16122 8.959548 ACAAATTCATGCAATATCTGTAACAGA 58.040 29.630 0.00 0.00 44.99 3.41
6629 16123 9.229784 CAAATTCATGCAATATCTGTAACAGAC 57.770 33.333 0.00 0.00 43.63 3.51
6630 16124 8.510243 AATTCATGCAATATCTGTAACAGACA 57.490 30.769 0.00 0.00 43.63 3.41
6631 16125 8.687292 ATTCATGCAATATCTGTAACAGACAT 57.313 30.769 0.00 0.00 43.63 3.06
6632 16126 9.783081 ATTCATGCAATATCTGTAACAGACATA 57.217 29.630 0.00 0.00 43.63 2.29
6633 16127 9.783081 TTCATGCAATATCTGTAACAGACATAT 57.217 29.630 0.00 0.00 43.63 1.78
6642 16136 8.818141 ATCTGTAACAGACATATAAACCGATG 57.182 34.615 0.00 0.00 43.63 3.84
6643 16137 7.778083 TCTGTAACAGACATATAAACCGATGT 58.222 34.615 0.00 0.00 37.45 3.06
6652 16146 8.635877 GACATATAAACCGATGTCTCATATCC 57.364 38.462 7.57 0.00 45.60 2.59
6653 16147 7.258441 ACATATAAACCGATGTCTCATATCCG 58.742 38.462 0.00 0.00 30.32 4.18
6654 16148 3.386768 AAACCGATGTCTCATATCCGG 57.613 47.619 0.00 0.00 0.00 5.14
6655 16149 0.603569 ACCGATGTCTCATATCCGGC 59.396 55.000 0.00 0.00 0.00 6.13
6656 16150 0.603065 CCGATGTCTCATATCCGGCA 59.397 55.000 0.00 0.00 0.00 5.69
6657 16151 1.670087 CCGATGTCTCATATCCGGCAC 60.670 57.143 0.00 0.00 0.00 5.01
6658 16152 1.670087 CGATGTCTCATATCCGGCACC 60.670 57.143 0.00 0.00 0.00 5.01
6659 16153 0.687354 ATGTCTCATATCCGGCACCC 59.313 55.000 0.00 0.00 0.00 4.61
6660 16154 0.398522 TGTCTCATATCCGGCACCCT 60.399 55.000 0.00 0.00 0.00 4.34
6661 16155 1.133294 TGTCTCATATCCGGCACCCTA 60.133 52.381 0.00 0.00 0.00 3.53
6662 16156 2.180276 GTCTCATATCCGGCACCCTAT 58.820 52.381 0.00 0.00 0.00 2.57
6663 16157 3.245479 TGTCTCATATCCGGCACCCTATA 60.245 47.826 0.00 0.00 0.00 1.31
6664 16158 3.961408 GTCTCATATCCGGCACCCTATAT 59.039 47.826 0.00 0.00 0.00 0.86
6665 16159 3.960755 TCTCATATCCGGCACCCTATATG 59.039 47.826 10.79 10.79 33.06 1.78
6666 16160 2.434336 TCATATCCGGCACCCTATATGC 59.566 50.000 11.79 0.00 42.62 3.14
6667 16161 1.945580 TATCCGGCACCCTATATGCA 58.054 50.000 0.00 0.00 45.27 3.96
6668 16162 1.289160 ATCCGGCACCCTATATGCAT 58.711 50.000 3.79 3.79 45.27 3.96
6669 16163 1.945580 TCCGGCACCCTATATGCATA 58.054 50.000 9.27 9.27 45.27 3.14
6670 16164 1.553248 TCCGGCACCCTATATGCATAC 59.447 52.381 8.99 0.00 45.27 2.39
6671 16165 1.277842 CCGGCACCCTATATGCATACA 59.722 52.381 8.99 0.00 45.27 2.29
6672 16166 2.290008 CCGGCACCCTATATGCATACAA 60.290 50.000 8.99 0.00 45.27 2.41
6673 16167 3.407698 CGGCACCCTATATGCATACAAA 58.592 45.455 8.99 0.00 45.27 2.83
6674 16168 4.009675 CGGCACCCTATATGCATACAAAT 58.990 43.478 8.99 0.00 45.27 2.32
6675 16169 4.458989 CGGCACCCTATATGCATACAAATT 59.541 41.667 8.99 0.00 45.27 1.82
6676 16170 5.391950 CGGCACCCTATATGCATACAAATTC 60.392 44.000 8.99 0.00 45.27 2.17
6677 16171 5.476599 GGCACCCTATATGCATACAAATTCA 59.523 40.000 8.99 0.00 45.27 2.57
6678 16172 6.153340 GGCACCCTATATGCATACAAATTCAT 59.847 38.462 8.99 0.00 45.27 2.57
6679 16173 7.031372 GCACCCTATATGCATACAAATTCATG 58.969 38.462 8.99 2.10 42.88 3.07
6680 16174 7.031372 CACCCTATATGCATACAAATTCATGC 58.969 38.462 8.99 10.96 46.21 4.06
6738 16232 8.635765 AACGGGCATAATTCATATAAACATCT 57.364 30.769 0.00 0.00 0.00 2.90
6739 16233 8.268850 ACGGGCATAATTCATATAAACATCTC 57.731 34.615 0.00 0.00 0.00 2.75
6757 16251 7.154435 ACATCTCCAAAAGATCATCAAACAG 57.846 36.000 0.00 0.00 43.13 3.16
6768 16262 7.035840 AGATCATCAAACAGGCATAATTCAC 57.964 36.000 0.00 0.00 0.00 3.18
6784 16278 3.694043 TTCACGGAGTTCAATGATCCA 57.306 42.857 4.04 0.00 41.61 3.41
6808 16302 6.109156 ACACATTGTGACTCTACATGGTAA 57.891 37.500 23.12 0.00 36.96 2.85
6852 16346 1.003696 GGCTAGCTTCACCACTTCCTT 59.996 52.381 15.72 0.00 0.00 3.36
6864 16358 0.537371 ACTTCCTTGCCGTCCCTTTG 60.537 55.000 0.00 0.00 0.00 2.77
6935 16429 1.447838 CGTTGGAGTCGGACCCATG 60.448 63.158 15.91 10.00 31.66 3.66
7022 16516 1.552799 TTGAGCTTGGCCATCCTCGA 61.553 55.000 21.45 18.66 0.00 4.04
7049 16543 1.203052 CCGCTTTGGATTGCTCAATGT 59.797 47.619 0.00 0.00 42.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
184 188 6.954684 TGGGGGATTTTAAATTAAGTGCTACA 59.045 34.615 0.00 0.00 0.00 2.74
253 258 2.009774 CGACACCAAACATGGGATCTC 58.990 52.381 0.00 0.00 0.00 2.75
343 348 7.011482 GGTGATTCGGTTTATCATATAGATGCC 59.989 40.741 0.00 0.00 37.57 4.40
406 411 5.216622 AGGTAGAAGTAGTGGCATTGGATA 58.783 41.667 0.00 0.00 0.00 2.59
513 525 1.878953 CCCCTACCGTGTTATGCATC 58.121 55.000 0.19 0.00 0.00 3.91
699 713 5.486775 TCTGAAGATGAATCCCAAGAGAACT 59.513 40.000 0.00 0.00 0.00 3.01
714 728 1.871418 TGAGTCCCCCTCTGAAGATG 58.129 55.000 0.00 0.00 41.11 2.90
820 834 3.214696 AGAAGAGACCCTTTTGTGGTG 57.785 47.619 0.00 0.00 35.85 4.17
920 1405 4.529377 AGGTTCACAGACCGTAATCCTTAA 59.471 41.667 0.00 0.00 44.62 1.85
943 1436 0.533032 TGACGGCGATCACATGGTTA 59.467 50.000 16.62 0.00 0.00 2.85
976 1524 0.382158 GTCTGATCGGCGATCACAGA 59.618 55.000 39.96 33.33 43.11 3.41
1698 2350 3.973973 TCCATAGGGTACTTGGATTCCAG 59.026 47.826 5.36 3.33 34.65 3.86
1728 2380 7.507829 CAAGGATAGAAGAAGTCATTCTCCAT 58.492 38.462 0.00 0.00 45.25 3.41
2098 2769 6.811665 CAGAGGATGTGACGTTCATAGTTTTA 59.188 38.462 7.07 0.00 0.00 1.52
2330 7384 6.015940 GGGATATCAGGCAAAAATCTGGTTAG 60.016 42.308 4.83 0.00 0.00 2.34
2526 7677 4.437794 GGGTGCTATAAAACGCTTTGTACC 60.438 45.833 0.00 0.00 0.00 3.34
2544 7695 0.761187 TCTATCAGCATCAGGGGTGC 59.239 55.000 0.00 0.00 42.81 5.01
2745 8764 4.996788 ATCATTCCATGGTTTTGAGAGC 57.003 40.909 12.58 0.00 0.00 4.09
3072 9099 2.091541 TGATTGACCCGCTTCCAAATC 58.908 47.619 0.00 0.00 0.00 2.17
3073 9100 2.094675 CTGATTGACCCGCTTCCAAAT 58.905 47.619 0.00 0.00 0.00 2.32
3074 9101 1.533625 CTGATTGACCCGCTTCCAAA 58.466 50.000 0.00 0.00 0.00 3.28
3075 9102 0.322456 CCTGATTGACCCGCTTCCAA 60.322 55.000 0.00 0.00 0.00 3.53
3076 9103 1.299648 CCTGATTGACCCGCTTCCA 59.700 57.895 0.00 0.00 0.00 3.53
3077 9104 2.115291 GCCTGATTGACCCGCTTCC 61.115 63.158 0.00 0.00 0.00 3.46
3078 9105 1.078143 AGCCTGATTGACCCGCTTC 60.078 57.895 0.00 0.00 0.00 3.86
3079 9106 1.078143 GAGCCTGATTGACCCGCTT 60.078 57.895 0.00 0.00 0.00 4.68
3080 9107 2.249413 CTGAGCCTGATTGACCCGCT 62.249 60.000 0.00 0.00 0.00 5.52
3081 9108 1.817099 CTGAGCCTGATTGACCCGC 60.817 63.158 0.00 0.00 0.00 6.13
3082 9109 1.153289 CCTGAGCCTGATTGACCCG 60.153 63.158 0.00 0.00 0.00 5.28
3083 9110 0.107459 GACCTGAGCCTGATTGACCC 60.107 60.000 0.00 0.00 0.00 4.46
3084 9111 0.615331 TGACCTGAGCCTGATTGACC 59.385 55.000 0.00 0.00 0.00 4.02
3085 9112 2.011046 GCTGACCTGAGCCTGATTGAC 61.011 57.143 0.00 0.00 32.35 3.18
3086 9113 0.251354 GCTGACCTGAGCCTGATTGA 59.749 55.000 0.00 0.00 32.35 2.57
3087 9114 0.035725 TGCTGACCTGAGCCTGATTG 60.036 55.000 0.00 0.00 38.28 2.67
3088 9115 0.917533 ATGCTGACCTGAGCCTGATT 59.082 50.000 0.00 0.00 38.28 2.57
3089 9116 0.917533 AATGCTGACCTGAGCCTGAT 59.082 50.000 0.00 0.00 38.28 2.90
3090 9117 0.035725 CAATGCTGACCTGAGCCTGA 60.036 55.000 0.00 0.00 38.28 3.86
3091 9118 0.322277 ACAATGCTGACCTGAGCCTG 60.322 55.000 0.00 0.00 38.28 4.85
3092 9119 1.065854 GTACAATGCTGACCTGAGCCT 60.066 52.381 0.00 0.00 38.28 4.58
3093 9120 1.339055 TGTACAATGCTGACCTGAGCC 60.339 52.381 0.00 0.00 38.28 4.70
3094 9121 2.099141 TGTACAATGCTGACCTGAGC 57.901 50.000 0.00 0.00 39.62 4.26
3095 9122 3.865446 TGATGTACAATGCTGACCTGAG 58.135 45.455 0.00 0.00 0.00 3.35
3096 9123 3.515104 TCTGATGTACAATGCTGACCTGA 59.485 43.478 0.00 0.00 0.00 3.86
3097 9124 3.865446 TCTGATGTACAATGCTGACCTG 58.135 45.455 0.00 0.00 0.00 4.00
3098 9125 4.019860 AGTTCTGATGTACAATGCTGACCT 60.020 41.667 0.00 0.00 0.00 3.85
3099 9126 4.256920 AGTTCTGATGTACAATGCTGACC 58.743 43.478 0.00 0.00 0.00 4.02
3100 9127 6.591834 AGTTAGTTCTGATGTACAATGCTGAC 59.408 38.462 0.00 0.56 0.00 3.51
3101 9128 6.701340 AGTTAGTTCTGATGTACAATGCTGA 58.299 36.000 0.00 0.00 0.00 4.26
3102 9129 6.974932 AGTTAGTTCTGATGTACAATGCTG 57.025 37.500 0.00 0.00 0.00 4.41
3103 9130 8.094548 TGTTAGTTAGTTCTGATGTACAATGCT 58.905 33.333 0.00 0.00 0.00 3.79
3104 9131 8.251750 TGTTAGTTAGTTCTGATGTACAATGC 57.748 34.615 0.00 0.00 0.00 3.56
3106 9133 9.216117 GGTTGTTAGTTAGTTCTGATGTACAAT 57.784 33.333 0.00 0.00 0.00 2.71
3107 9134 7.383029 CGGTTGTTAGTTAGTTCTGATGTACAA 59.617 37.037 0.00 0.00 0.00 2.41
3108 9135 6.864685 CGGTTGTTAGTTAGTTCTGATGTACA 59.135 38.462 0.00 0.00 0.00 2.90
3109 9136 6.865205 ACGGTTGTTAGTTAGTTCTGATGTAC 59.135 38.462 0.00 0.00 0.00 2.90
3110 9137 6.985117 ACGGTTGTTAGTTAGTTCTGATGTA 58.015 36.000 0.00 0.00 0.00 2.29
3111 9138 5.850614 ACGGTTGTTAGTTAGTTCTGATGT 58.149 37.500 0.00 0.00 0.00 3.06
3112 9139 6.780706 AACGGTTGTTAGTTAGTTCTGATG 57.219 37.500 0.00 0.00 36.28 3.07
3114 9141 9.979578 TTATAAACGGTTGTTAGTTAGTTCTGA 57.020 29.630 0.00 0.00 37.31 3.27
3138 9165 9.337396 AGCATTGACGAACCTAATCAATAATTA 57.663 29.630 0.00 0.00 40.30 1.40
3139 9166 8.225603 AGCATTGACGAACCTAATCAATAATT 57.774 30.769 0.00 0.00 40.30 1.40
3140 9167 7.807977 AGCATTGACGAACCTAATCAATAAT 57.192 32.000 0.00 0.00 40.30 1.28
3141 9168 7.624360 AAGCATTGACGAACCTAATCAATAA 57.376 32.000 0.00 0.00 40.30 1.40
3142 9169 7.552687 AGAAAGCATTGACGAACCTAATCAATA 59.447 33.333 0.00 0.00 40.30 1.90
3143 9170 6.375455 AGAAAGCATTGACGAACCTAATCAAT 59.625 34.615 0.00 0.00 42.43 2.57
3144 9171 5.705441 AGAAAGCATTGACGAACCTAATCAA 59.295 36.000 0.00 0.00 36.81 2.57
3145 9172 5.245531 AGAAAGCATTGACGAACCTAATCA 58.754 37.500 0.00 0.00 0.00 2.57
3146 9173 5.803020 AGAAAGCATTGACGAACCTAATC 57.197 39.130 0.00 0.00 0.00 1.75
3147 9174 6.093633 GGTTAGAAAGCATTGACGAACCTAAT 59.906 38.462 0.00 0.00 37.67 1.73
3148 9175 5.410439 GGTTAGAAAGCATTGACGAACCTAA 59.590 40.000 0.00 0.00 37.67 2.69
3149 9176 4.933400 GGTTAGAAAGCATTGACGAACCTA 59.067 41.667 0.00 0.00 37.67 3.08
3150 9177 3.751698 GGTTAGAAAGCATTGACGAACCT 59.248 43.478 0.00 0.00 37.67 3.50
3151 9178 3.119955 GGGTTAGAAAGCATTGACGAACC 60.120 47.826 0.00 0.00 38.82 3.62
3152 9179 3.751698 AGGGTTAGAAAGCATTGACGAAC 59.248 43.478 0.00 0.00 0.00 3.95
3153 9180 3.751175 CAGGGTTAGAAAGCATTGACGAA 59.249 43.478 0.00 0.00 0.00 3.85
3154 9181 3.244422 ACAGGGTTAGAAAGCATTGACGA 60.244 43.478 0.00 0.00 0.00 4.20
3155 9182 3.074412 ACAGGGTTAGAAAGCATTGACG 58.926 45.455 0.00 0.00 0.00 4.35
3156 9183 7.520614 GCATATACAGGGTTAGAAAGCATTGAC 60.521 40.741 0.00 0.00 0.00 3.18
3157 9184 6.486657 GCATATACAGGGTTAGAAAGCATTGA 59.513 38.462 0.00 0.00 0.00 2.57
3158 9185 6.488006 AGCATATACAGGGTTAGAAAGCATTG 59.512 38.462 0.00 0.00 0.00 2.82
3159 9186 6.605119 AGCATATACAGGGTTAGAAAGCATT 58.395 36.000 0.00 0.00 0.00 3.56
3160 9187 6.192970 AGCATATACAGGGTTAGAAAGCAT 57.807 37.500 0.00 0.00 0.00 3.79
3161 9188 5.630415 AGCATATACAGGGTTAGAAAGCA 57.370 39.130 0.00 0.00 0.00 3.91
3162 9189 5.239525 CCAAGCATATACAGGGTTAGAAAGC 59.760 44.000 0.00 0.00 0.00 3.51
3163 9190 5.239525 GCCAAGCATATACAGGGTTAGAAAG 59.760 44.000 0.00 0.00 0.00 2.62
3164 9191 5.130350 GCCAAGCATATACAGGGTTAGAAA 58.870 41.667 0.00 0.00 0.00 2.52
3165 9192 4.714632 GCCAAGCATATACAGGGTTAGAA 58.285 43.478 0.00 0.00 0.00 2.10
3166 9193 3.244078 CGCCAAGCATATACAGGGTTAGA 60.244 47.826 0.00 0.00 0.00 2.10
3167 9194 3.067106 CGCCAAGCATATACAGGGTTAG 58.933 50.000 0.00 0.00 0.00 2.34
3168 9195 2.701423 TCGCCAAGCATATACAGGGTTA 59.299 45.455 0.00 0.00 0.00 2.85
3169 9196 1.488812 TCGCCAAGCATATACAGGGTT 59.511 47.619 0.00 0.00 0.00 4.11
3170 9197 1.128200 TCGCCAAGCATATACAGGGT 58.872 50.000 0.00 0.00 0.00 4.34
3171 9198 2.079158 CATCGCCAAGCATATACAGGG 58.921 52.381 0.00 0.00 0.00 4.45
3172 9199 2.079158 CCATCGCCAAGCATATACAGG 58.921 52.381 0.00 0.00 0.00 4.00
3173 9200 2.481568 CACCATCGCCAAGCATATACAG 59.518 50.000 0.00 0.00 0.00 2.74
3174 9201 2.158827 ACACCATCGCCAAGCATATACA 60.159 45.455 0.00 0.00 0.00 2.29
3175 9202 2.494059 ACACCATCGCCAAGCATATAC 58.506 47.619 0.00 0.00 0.00 1.47
3176 9203 2.877786 CAACACCATCGCCAAGCATATA 59.122 45.455 0.00 0.00 0.00 0.86
3177 9204 1.677576 CAACACCATCGCCAAGCATAT 59.322 47.619 0.00 0.00 0.00 1.78
3178 9205 1.093972 CAACACCATCGCCAAGCATA 58.906 50.000 0.00 0.00 0.00 3.14
3179 9206 0.895100 ACAACACCATCGCCAAGCAT 60.895 50.000 0.00 0.00 0.00 3.79
3180 9207 1.514678 GACAACACCATCGCCAAGCA 61.515 55.000 0.00 0.00 0.00 3.91
3181 9208 1.210155 GACAACACCATCGCCAAGC 59.790 57.895 0.00 0.00 0.00 4.01
3182 9209 1.197721 GAAGACAACACCATCGCCAAG 59.802 52.381 0.00 0.00 0.00 3.61
3183 9210 1.202758 AGAAGACAACACCATCGCCAA 60.203 47.619 0.00 0.00 0.00 4.52
3184 9211 0.396435 AGAAGACAACACCATCGCCA 59.604 50.000 0.00 0.00 0.00 5.69
3185 9212 1.523758 AAGAAGACAACACCATCGCC 58.476 50.000 0.00 0.00 0.00 5.54
3186 9213 2.290641 ACAAAGAAGACAACACCATCGC 59.709 45.455 0.00 0.00 0.00 4.58
3187 9214 4.282068 CAACAAAGAAGACAACACCATCG 58.718 43.478 0.00 0.00 0.00 3.84
3188 9215 4.338118 TCCAACAAAGAAGACAACACCATC 59.662 41.667 0.00 0.00 0.00 3.51
3189 9216 4.277476 TCCAACAAAGAAGACAACACCAT 58.723 39.130 0.00 0.00 0.00 3.55
3190 9217 3.691575 TCCAACAAAGAAGACAACACCA 58.308 40.909 0.00 0.00 0.00 4.17
3191 9218 4.712122 TTCCAACAAAGAAGACAACACC 57.288 40.909 0.00 0.00 0.00 4.16
3192 9219 6.156519 AGTTTTCCAACAAAGAAGACAACAC 58.843 36.000 0.00 0.00 35.05 3.32
3193 9220 6.339587 AGTTTTCCAACAAAGAAGACAACA 57.660 33.333 0.00 0.00 35.05 3.33
3194 9221 6.645003 ACAAGTTTTCCAACAAAGAAGACAAC 59.355 34.615 0.00 0.00 35.05 3.32
3195 9222 6.754193 ACAAGTTTTCCAACAAAGAAGACAA 58.246 32.000 0.00 0.00 35.05 3.18
3196 9223 6.339587 ACAAGTTTTCCAACAAAGAAGACA 57.660 33.333 0.00 0.00 35.05 3.41
3197 9224 7.758495 TCTACAAGTTTTCCAACAAAGAAGAC 58.242 34.615 0.00 0.00 35.05 3.01
3198 9225 7.931578 TCTACAAGTTTTCCAACAAAGAAGA 57.068 32.000 0.00 0.00 35.05 2.87
3199 9226 8.190784 ACATCTACAAGTTTTCCAACAAAGAAG 58.809 33.333 0.00 0.00 35.05 2.85
3200 9227 7.973388 CACATCTACAAGTTTTCCAACAAAGAA 59.027 33.333 0.00 0.00 35.05 2.52
3201 9228 7.122055 ACACATCTACAAGTTTTCCAACAAAGA 59.878 33.333 0.00 0.00 35.05 2.52
3202 9229 7.257722 ACACATCTACAAGTTTTCCAACAAAG 58.742 34.615 0.00 0.00 35.05 2.77
3203 9230 7.164230 ACACATCTACAAGTTTTCCAACAAA 57.836 32.000 0.00 0.00 35.05 2.83
3204 9231 6.767524 ACACATCTACAAGTTTTCCAACAA 57.232 33.333 0.00 0.00 35.05 2.83
3205 9232 6.767524 AACACATCTACAAGTTTTCCAACA 57.232 33.333 0.00 0.00 35.05 3.33
3206 9233 7.254852 TGAAACACATCTACAAGTTTTCCAAC 58.745 34.615 0.00 0.00 34.62 3.77
3207 9234 7.338196 TCTGAAACACATCTACAAGTTTTCCAA 59.662 33.333 0.00 0.00 34.62 3.53
3208 9235 6.826231 TCTGAAACACATCTACAAGTTTTCCA 59.174 34.615 0.00 0.00 34.62 3.53
3209 9236 7.226720 TCTCTGAAACACATCTACAAGTTTTCC 59.773 37.037 0.00 0.00 34.62 3.13
3210 9237 8.142994 TCTCTGAAACACATCTACAAGTTTTC 57.857 34.615 0.00 0.00 34.62 2.29
3211 9238 8.562892 CATCTCTGAAACACATCTACAAGTTTT 58.437 33.333 0.00 0.00 34.62 2.43
3212 9239 7.308229 GCATCTCTGAAACACATCTACAAGTTT 60.308 37.037 0.00 0.00 36.94 2.66
3213 9240 6.148480 GCATCTCTGAAACACATCTACAAGTT 59.852 38.462 0.00 0.00 0.00 2.66
3214 9241 5.641209 GCATCTCTGAAACACATCTACAAGT 59.359 40.000 0.00 0.00 0.00 3.16
3215 9242 5.873712 AGCATCTCTGAAACACATCTACAAG 59.126 40.000 0.00 0.00 0.00 3.16
3216 9243 5.798132 AGCATCTCTGAAACACATCTACAA 58.202 37.500 0.00 0.00 0.00 2.41
3217 9244 5.411831 AGCATCTCTGAAACACATCTACA 57.588 39.130 0.00 0.00 0.00 2.74
3218 9245 4.808364 GGAGCATCTCTGAAACACATCTAC 59.192 45.833 0.00 0.00 33.73 2.59
3219 9246 4.141846 GGGAGCATCTCTGAAACACATCTA 60.142 45.833 0.00 0.00 33.73 1.98
3220 9247 3.370315 GGGAGCATCTCTGAAACACATCT 60.370 47.826 0.00 0.00 33.73 2.90
3221 9248 2.941720 GGGAGCATCTCTGAAACACATC 59.058 50.000 0.00 0.00 33.73 3.06
3222 9249 2.356535 GGGGAGCATCTCTGAAACACAT 60.357 50.000 0.00 0.00 34.46 3.21
3223 9250 1.003580 GGGGAGCATCTCTGAAACACA 59.996 52.381 0.00 0.00 34.46 3.72
3224 9251 1.280421 AGGGGAGCATCTCTGAAACAC 59.720 52.381 0.00 0.00 34.46 3.32
3225 9252 1.556911 GAGGGGAGCATCTCTGAAACA 59.443 52.381 0.00 0.00 34.46 2.83
3226 9253 1.556911 TGAGGGGAGCATCTCTGAAAC 59.443 52.381 0.00 0.00 34.46 2.78
3227 9254 1.556911 GTGAGGGGAGCATCTCTGAAA 59.443 52.381 0.00 0.00 34.46 2.69
3228 9255 1.198713 GTGAGGGGAGCATCTCTGAA 58.801 55.000 0.00 0.00 34.46 3.02
3229 9256 1.039785 CGTGAGGGGAGCATCTCTGA 61.040 60.000 0.00 0.00 34.46 3.27
3230 9257 1.440893 CGTGAGGGGAGCATCTCTG 59.559 63.158 0.00 0.00 34.46 3.35
3231 9258 3.947173 CGTGAGGGGAGCATCTCT 58.053 61.111 0.00 0.00 34.46 3.10
3675 9703 2.504175 GTTCCTATGGGCTGACCTAACA 59.496 50.000 0.00 0.00 41.11 2.41
3679 9707 0.912486 GTGTTCCTATGGGCTGACCT 59.088 55.000 0.00 0.00 41.11 3.85
3682 9710 1.833630 CAGAGTGTTCCTATGGGCTGA 59.166 52.381 0.00 0.00 0.00 4.26
3683 9711 1.134280 CCAGAGTGTTCCTATGGGCTG 60.134 57.143 0.00 0.00 46.84 4.85
3684 9712 1.207791 CCAGAGTGTTCCTATGGGCT 58.792 55.000 0.00 0.00 46.84 5.19
3685 9713 3.788672 CCAGAGTGTTCCTATGGGC 57.211 57.895 0.00 0.00 46.84 5.36
3688 9716 3.701542 TGTAGCTCCAGAGTGTTCCTATG 59.298 47.826 0.00 0.00 31.98 2.23
3689 9717 3.982516 TGTAGCTCCAGAGTGTTCCTAT 58.017 45.455 0.00 0.00 0.00 2.57
3690 9718 3.451402 TGTAGCTCCAGAGTGTTCCTA 57.549 47.619 0.00 0.00 0.00 2.94
3691 9719 2.310779 TGTAGCTCCAGAGTGTTCCT 57.689 50.000 0.00 0.00 0.00 3.36
3692 9720 2.159028 GGATGTAGCTCCAGAGTGTTCC 60.159 54.545 0.00 0.00 35.24 3.62
3693 9721 2.480416 CGGATGTAGCTCCAGAGTGTTC 60.480 54.545 0.00 0.00 34.78 3.18
3694 9722 1.478510 CGGATGTAGCTCCAGAGTGTT 59.521 52.381 0.00 0.00 34.78 3.32
3695 9723 1.107114 CGGATGTAGCTCCAGAGTGT 58.893 55.000 0.00 0.00 34.78 3.55
3696 9724 0.387202 CCGGATGTAGCTCCAGAGTG 59.613 60.000 0.00 0.00 34.78 3.51
3697 9725 0.757188 CCCGGATGTAGCTCCAGAGT 60.757 60.000 0.73 0.00 34.78 3.24
3698 9726 2.045280 CCCGGATGTAGCTCCAGAG 58.955 63.158 0.73 0.00 34.78 3.35
3699 9727 2.134287 GCCCGGATGTAGCTCCAGA 61.134 63.158 0.73 0.00 34.78 3.86
3700 9728 2.423446 GCCCGGATGTAGCTCCAG 59.577 66.667 0.73 0.00 34.78 3.86
3701 9729 3.161450 GGCCCGGATGTAGCTCCA 61.161 66.667 0.73 0.00 34.78 3.86
3702 9730 3.161450 TGGCCCGGATGTAGCTCC 61.161 66.667 0.73 0.00 0.00 4.70
3703 9731 2.134287 TCTGGCCCGGATGTAGCTC 61.134 63.158 0.73 0.00 0.00 4.09
3704 9732 2.041922 TCTGGCCCGGATGTAGCT 60.042 61.111 0.73 0.00 0.00 3.32
3705 9733 2.109181 GTCTGGCCCGGATGTAGC 59.891 66.667 0.73 0.00 0.00 3.58
3706 9734 2.822399 GGTCTGGCCCGGATGTAG 59.178 66.667 0.73 0.00 0.00 2.74
3715 9743 2.490270 ATCTTGCTGTGGGTCTGGCC 62.490 60.000 0.00 0.00 0.00 5.36
3716 9744 1.001641 ATCTTGCTGTGGGTCTGGC 60.002 57.895 0.00 0.00 0.00 4.85
3717 9745 0.393537 GGATCTTGCTGTGGGTCTGG 60.394 60.000 0.00 0.00 0.00 3.86
3718 9746 0.393537 GGGATCTTGCTGTGGGTCTG 60.394 60.000 0.00 0.00 0.00 3.51
3719 9747 1.566298 GGGGATCTTGCTGTGGGTCT 61.566 60.000 0.00 0.00 0.00 3.85
3720 9748 1.077429 GGGGATCTTGCTGTGGGTC 60.077 63.158 0.00 0.00 0.00 4.46
3721 9749 1.542375 AGGGGATCTTGCTGTGGGT 60.542 57.895 0.00 0.00 0.00 4.51
3722 9750 1.225704 GAGGGGATCTTGCTGTGGG 59.774 63.158 0.00 0.00 0.00 4.61
3723 9751 1.225704 GGAGGGGATCTTGCTGTGG 59.774 63.158 0.00 0.00 0.00 4.17
3724 9752 1.153289 CGGAGGGGATCTTGCTGTG 60.153 63.158 0.00 0.00 0.00 3.66
3725 9753 1.613630 ACGGAGGGGATCTTGCTGT 60.614 57.895 0.00 0.00 0.00 4.40
3726 9754 1.153289 CACGGAGGGGATCTTGCTG 60.153 63.158 0.00 0.00 0.00 4.41
3727 9755 0.325296 TACACGGAGGGGATCTTGCT 60.325 55.000 0.00 0.00 0.00 3.91
3728 9756 0.105039 CTACACGGAGGGGATCTTGC 59.895 60.000 0.00 0.00 0.00 4.01
3729 9757 1.409427 GTCTACACGGAGGGGATCTTG 59.591 57.143 0.00 0.00 0.00 3.02
3730 9758 1.688627 GGTCTACACGGAGGGGATCTT 60.689 57.143 0.00 0.00 0.00 2.40
3731 9759 0.106116 GGTCTACACGGAGGGGATCT 60.106 60.000 0.00 0.00 0.00 2.75
3732 9760 0.106116 AGGTCTACACGGAGGGGATC 60.106 60.000 0.00 0.00 0.00 3.36
3733 9761 0.397254 CAGGTCTACACGGAGGGGAT 60.397 60.000 0.00 0.00 0.00 3.85
3734 9762 1.000019 CAGGTCTACACGGAGGGGA 60.000 63.158 0.00 0.00 0.00 4.81
3735 9763 1.000019 TCAGGTCTACACGGAGGGG 60.000 63.158 0.00 0.00 0.00 4.79
3736 9764 1.654954 CGTCAGGTCTACACGGAGGG 61.655 65.000 0.00 0.00 0.00 4.30
3737 9765 1.801332 CGTCAGGTCTACACGGAGG 59.199 63.158 0.00 0.00 0.00 4.30
3738 9766 1.136984 GCGTCAGGTCTACACGGAG 59.863 63.158 0.00 0.00 34.04 4.63
3739 9767 2.683859 CGCGTCAGGTCTACACGGA 61.684 63.158 0.00 0.00 34.04 4.69
3740 9768 2.202440 CGCGTCAGGTCTACACGG 60.202 66.667 0.00 0.00 34.04 4.94
3741 9769 1.511464 GACGCGTCAGGTCTACACG 60.511 63.158 33.09 0.00 36.60 4.49
3742 9770 1.154073 GGACGCGTCAGGTCTACAC 60.154 63.158 37.26 15.36 34.82 2.90
3743 9771 2.683859 CGGACGCGTCAGGTCTACA 61.684 63.158 37.26 0.00 34.82 2.74
3744 9772 2.099831 CGGACGCGTCAGGTCTAC 59.900 66.667 37.26 18.88 34.82 2.59
3745 9773 1.518056 AAACGGACGCGTCAGGTCTA 61.518 55.000 35.96 0.00 34.82 2.59
3746 9774 2.744307 GAAACGGACGCGTCAGGTCT 62.744 60.000 35.96 22.98 34.82 3.85
3747 9775 2.355481 AAACGGACGCGTCAGGTC 60.355 61.111 35.96 20.96 0.00 3.85
3748 9776 2.355481 GAAACGGACGCGTCAGGT 60.355 61.111 35.96 30.93 0.00 4.00
3749 9777 3.110178 GGAAACGGACGCGTCAGG 61.110 66.667 35.96 29.33 0.00 3.86
3750 9778 3.110178 GGGAAACGGACGCGTCAG 61.110 66.667 37.26 35.00 0.00 3.51
3751 9779 4.668118 GGGGAAACGGACGCGTCA 62.668 66.667 37.26 0.00 0.00 4.35
5197 12640 1.677052 AGACGATAAAGGCGAGTCCTC 59.323 52.381 0.00 0.00 46.94 3.71
5199 12642 1.134560 ACAGACGATAAAGGCGAGTCC 59.865 52.381 0.00 0.00 32.70 3.85
5200 12643 2.563471 ACAGACGATAAAGGCGAGTC 57.437 50.000 0.00 0.00 0.00 3.36
5201 12644 2.993899 CAAACAGACGATAAAGGCGAGT 59.006 45.455 0.00 0.00 0.00 4.18
5202 12645 2.993899 ACAAACAGACGATAAAGGCGAG 59.006 45.455 0.00 0.00 0.00 5.03
5203 12646 2.734606 CACAAACAGACGATAAAGGCGA 59.265 45.455 0.00 0.00 0.00 5.54
5204 12647 2.159707 CCACAAACAGACGATAAAGGCG 60.160 50.000 0.00 0.00 0.00 5.52
5205 12648 3.071479 TCCACAAACAGACGATAAAGGC 58.929 45.455 0.00 0.00 0.00 4.35
5207 12650 4.755123 ACCTTCCACAAACAGACGATAAAG 59.245 41.667 0.00 0.00 0.00 1.85
5208 12651 4.710324 ACCTTCCACAAACAGACGATAAA 58.290 39.130 0.00 0.00 0.00 1.40
5209 12652 4.039973 AGACCTTCCACAAACAGACGATAA 59.960 41.667 0.00 0.00 0.00 1.75
5210 12653 3.576982 AGACCTTCCACAAACAGACGATA 59.423 43.478 0.00 0.00 0.00 2.92
5211 12654 2.368875 AGACCTTCCACAAACAGACGAT 59.631 45.455 0.00 0.00 0.00 3.73
5212 12655 1.760613 AGACCTTCCACAAACAGACGA 59.239 47.619 0.00 0.00 0.00 4.20
5213 12656 2.240493 AGACCTTCCACAAACAGACG 57.760 50.000 0.00 0.00 0.00 4.18
5215 12658 3.541632 GTCAAGACCTTCCACAAACAGA 58.458 45.455 0.00 0.00 0.00 3.41
5216 12659 3.971032 GTCAAGACCTTCCACAAACAG 57.029 47.619 0.00 0.00 0.00 3.16
5229 12672 1.264288 CAAGAAAGGCACGGTCAAGAC 59.736 52.381 0.00 0.00 0.00 3.01
5230 12673 1.140052 TCAAGAAAGGCACGGTCAAGA 59.860 47.619 0.00 0.00 0.00 3.02
5231 12674 1.532868 CTCAAGAAAGGCACGGTCAAG 59.467 52.381 0.00 0.00 0.00 3.02
5232 12675 1.140052 TCTCAAGAAAGGCACGGTCAA 59.860 47.619 0.00 0.00 0.00 3.18
5233 12676 0.756294 TCTCAAGAAAGGCACGGTCA 59.244 50.000 0.00 0.00 0.00 4.02
5234 12677 2.100605 ATCTCAAGAAAGGCACGGTC 57.899 50.000 0.00 0.00 0.00 4.79
5235 12678 2.554032 CAAATCTCAAGAAAGGCACGGT 59.446 45.455 0.00 0.00 0.00 4.83
5236 12679 2.095059 CCAAATCTCAAGAAAGGCACGG 60.095 50.000 0.00 0.00 0.00 4.94
5237 12680 2.813754 TCCAAATCTCAAGAAAGGCACG 59.186 45.455 0.00 0.00 0.00 5.34
5238 12681 4.802999 CTTCCAAATCTCAAGAAAGGCAC 58.197 43.478 0.00 0.00 0.00 5.01
5240 12683 3.671702 CGCTTCCAAATCTCAAGAAAGGC 60.672 47.826 0.00 0.00 0.00 4.35
5241 12684 3.119708 CCGCTTCCAAATCTCAAGAAAGG 60.120 47.826 0.00 0.00 0.00 3.11
5242 12685 3.119708 CCCGCTTCCAAATCTCAAGAAAG 60.120 47.826 0.00 0.00 0.00 2.62
5243 12686 2.819608 CCCGCTTCCAAATCTCAAGAAA 59.180 45.455 0.00 0.00 0.00 2.52
5245 12688 1.351017 ACCCGCTTCCAAATCTCAAGA 59.649 47.619 0.00 0.00 0.00 3.02
5249 12692 1.821216 TTGACCCGCTTCCAAATCTC 58.179 50.000 0.00 0.00 0.00 2.75
5250 12693 2.094675 CATTGACCCGCTTCCAAATCT 58.905 47.619 0.00 0.00 0.00 2.40
5568 14835 5.409643 AGCATTTGCATCGTAACAGATAC 57.590 39.130 5.20 0.00 45.16 2.24
5694 14965 3.679389 TCGGACGGAGGGAGTATATAAC 58.321 50.000 0.00 0.00 0.00 1.89
5718 15088 8.558973 TTTTTGTCCATTTTGATGACAAGTTT 57.441 26.923 0.00 0.00 37.13 2.66
5743 15113 9.275572 TGTATTTTAGTTCTAGATACACCCCTT 57.724 33.333 0.00 0.00 30.60 3.95
5744 15114 8.849543 TGTATTTTAGTTCTAGATACACCCCT 57.150 34.615 0.00 0.00 30.60 4.79
5745 15115 9.708092 GATGTATTTTAGTTCTAGATACACCCC 57.292 37.037 14.34 8.08 36.40 4.95
5788 15158 9.801873 CCGGAAATACTTGTCATCAAAATAAAT 57.198 29.630 0.00 0.00 32.87 1.40
5789 15159 9.015367 TCCGGAAATACTTGTCATCAAAATAAA 57.985 29.630 0.00 0.00 32.87 1.40
5790 15160 8.455682 GTCCGGAAATACTTGTCATCAAAATAA 58.544 33.333 5.23 0.00 32.87 1.40
5791 15161 7.201574 CGTCCGGAAATACTTGTCATCAAAATA 60.202 37.037 5.23 0.00 32.87 1.40
5792 15162 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
5793 15163 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
5794 15164 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
5795 15165 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
5796 15166 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
5797 15167 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
5798 15168 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
5799 15169 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
5800 15170 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
5801 15171 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
5802 15172 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
5803 15173 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
5804 15174 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
5805 15175 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
5806 15176 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
5807 15177 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
5808 15178 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
5809 15179 0.846015 TATACTCCCTCCGTCCGGAA 59.154 55.000 5.23 0.00 44.66 4.30
5810 15180 0.846015 TTATACTCCCTCCGTCCGGA 59.154 55.000 0.00 0.00 42.90 5.14
5811 15181 1.817447 GATTATACTCCCTCCGTCCGG 59.183 57.143 0.00 0.00 0.00 5.14
5812 15182 2.511659 TGATTATACTCCCTCCGTCCG 58.488 52.381 0.00 0.00 0.00 4.79
5813 15183 5.069251 CCATATGATTATACTCCCTCCGTCC 59.931 48.000 3.65 0.00 0.00 4.79
5814 15184 5.657302 ACCATATGATTATACTCCCTCCGTC 59.343 44.000 3.65 0.00 0.00 4.79
5815 15185 5.590818 ACCATATGATTATACTCCCTCCGT 58.409 41.667 3.65 0.00 0.00 4.69
5816 15186 5.894393 AGACCATATGATTATACTCCCTCCG 59.106 44.000 3.65 0.00 0.00 4.63
5817 15187 6.897966 TCAGACCATATGATTATACTCCCTCC 59.102 42.308 3.65 0.00 0.00 4.30
5818 15188 7.962995 TCAGACCATATGATTATACTCCCTC 57.037 40.000 3.65 0.00 0.00 4.30
5819 15189 7.903481 ACATCAGACCATATGATTATACTCCCT 59.097 37.037 3.65 0.00 35.20 4.20
5820 15190 8.083828 ACATCAGACCATATGATTATACTCCC 57.916 38.462 3.65 0.00 35.20 4.30
5821 15191 8.976353 AGACATCAGACCATATGATTATACTCC 58.024 37.037 3.65 0.00 35.20 3.85
5823 15193 9.766754 AGAGACATCAGACCATATGATTATACT 57.233 33.333 3.65 0.00 35.20 2.12
5825 15195 9.194972 GGAGAGACATCAGACCATATGATTATA 57.805 37.037 3.65 0.00 35.20 0.98
5826 15196 7.900246 AGGAGAGACATCAGACCATATGATTAT 59.100 37.037 3.65 0.00 35.20 1.28
5827 15197 7.244558 AGGAGAGACATCAGACCATATGATTA 58.755 38.462 3.65 0.00 35.20 1.75
5828 15198 6.083383 AGGAGAGACATCAGACCATATGATT 58.917 40.000 3.65 0.00 35.20 2.57
5829 15199 5.653346 AGGAGAGACATCAGACCATATGAT 58.347 41.667 3.65 0.00 37.90 2.45
5830 15200 5.072129 AGGAGAGACATCAGACCATATGA 57.928 43.478 3.65 0.00 0.00 2.15
5831 15201 5.511031 CCAAGGAGAGACATCAGACCATATG 60.511 48.000 0.00 0.00 0.00 1.78
5832 15202 4.592351 CCAAGGAGAGACATCAGACCATAT 59.408 45.833 0.00 0.00 0.00 1.78
5833 15203 3.963374 CCAAGGAGAGACATCAGACCATA 59.037 47.826 0.00 0.00 0.00 2.74
6087 15521 1.200484 GCTAGCTACGCTGGTATCTCC 59.800 57.143 7.70 0.00 40.10 3.71
6150 15588 8.825774 ACATGTACATGGGCATCTATCTAATTA 58.174 33.333 33.32 0.00 42.91 1.40
6153 15591 6.466812 CACATGTACATGGGCATCTATCTAA 58.533 40.000 33.32 0.00 42.91 2.10
6154 15592 5.046376 CCACATGTACATGGGCATCTATCTA 60.046 44.000 33.32 0.00 40.81 1.98
6156 15594 4.005650 CCACATGTACATGGGCATCTATC 58.994 47.826 33.32 0.00 40.81 2.08
6157 15595 4.025040 CCACATGTACATGGGCATCTAT 57.975 45.455 33.32 12.26 40.81 1.98
6261 15705 3.384668 CCATCGCACAGTTCCATAGTAG 58.615 50.000 0.00 0.00 0.00 2.57
6272 15716 3.674528 ATAGAAGATCCCATCGCACAG 57.325 47.619 0.00 0.00 0.00 3.66
6347 15791 6.040955 TGCCACATTGTTGTTATTTGGACTAA 59.959 34.615 0.00 0.00 32.34 2.24
6383 15877 3.641434 AAATGGTGACTCTGGAGATGG 57.359 47.619 4.49 0.00 0.00 3.51
6414 15908 2.698797 TCCGGCTCTTTCTAGGGTATTG 59.301 50.000 0.00 0.00 0.00 1.90
6415 15909 2.699321 GTCCGGCTCTTTCTAGGGTATT 59.301 50.000 0.00 0.00 0.00 1.89
6416 15910 2.091222 AGTCCGGCTCTTTCTAGGGTAT 60.091 50.000 0.00 0.00 0.00 2.73
6417 15911 1.287146 AGTCCGGCTCTTTCTAGGGTA 59.713 52.381 0.00 0.00 0.00 3.69
6490 15984 2.252072 ATATGCGGGTGTGAAGGCGT 62.252 55.000 0.00 0.00 0.00 5.68
6549 16043 9.908152 CATCGGTTTATATGTCTGTTACAGATA 57.092 33.333 18.52 16.09 42.73 1.98
6550 16044 8.421784 ACATCGGTTTATATGTCTGTTACAGAT 58.578 33.333 18.52 6.03 42.73 2.90
6551 16045 7.778083 ACATCGGTTTATATGTCTGTTACAGA 58.222 34.615 11.42 11.42 42.70 3.41
6552 16046 8.062231 GACATCGGTTTATATGTCTGTTACAG 57.938 38.462 5.94 5.94 45.52 2.74
6553 16047 7.997107 GACATCGGTTTATATGTCTGTTACA 57.003 36.000 7.93 0.00 45.52 2.41
6561 16055 7.258441 CGGATATGAGACATCGGTTTATATGT 58.742 38.462 0.00 0.00 39.00 2.29
6562 16056 6.697455 CCGGATATGAGACATCGGTTTATATG 59.303 42.308 0.00 0.00 0.00 1.78
6563 16057 6.683110 GCCGGATATGAGACATCGGTTTATAT 60.683 42.308 5.05 0.00 0.00 0.86
6564 16058 5.393787 GCCGGATATGAGACATCGGTTTATA 60.394 44.000 5.05 0.00 0.00 0.98
6565 16059 4.620803 GCCGGATATGAGACATCGGTTTAT 60.621 45.833 5.05 0.00 0.00 1.40
6566 16060 3.305813 GCCGGATATGAGACATCGGTTTA 60.306 47.826 5.05 0.00 0.00 2.01
6567 16061 2.548067 GCCGGATATGAGACATCGGTTT 60.548 50.000 5.05 0.00 0.00 3.27
6568 16062 1.000955 GCCGGATATGAGACATCGGTT 59.999 52.381 5.05 0.00 0.00 4.44
6569 16063 0.603569 GCCGGATATGAGACATCGGT 59.396 55.000 5.05 0.00 0.00 4.69
6570 16064 0.603065 TGCCGGATATGAGACATCGG 59.397 55.000 5.05 0.00 0.00 4.18
6571 16065 1.670087 GGTGCCGGATATGAGACATCG 60.670 57.143 5.05 0.00 0.00 3.84
6572 16066 1.338200 GGGTGCCGGATATGAGACATC 60.338 57.143 5.05 0.00 0.00 3.06
6573 16067 0.687354 GGGTGCCGGATATGAGACAT 59.313 55.000 5.05 0.00 0.00 3.06
6574 16068 0.398522 AGGGTGCCGGATATGAGACA 60.399 55.000 5.05 0.00 0.00 3.41
6575 16069 1.629043 TAGGGTGCCGGATATGAGAC 58.371 55.000 5.05 0.00 0.00 3.36
6576 16070 2.623418 ATAGGGTGCCGGATATGAGA 57.377 50.000 5.05 0.00 0.00 3.27
6577 16071 3.493350 GCATATAGGGTGCCGGATATGAG 60.493 52.174 18.10 0.00 37.11 2.90
6578 16072 2.434336 GCATATAGGGTGCCGGATATGA 59.566 50.000 18.10 0.00 37.11 2.15
6579 16073 2.170397 TGCATATAGGGTGCCGGATATG 59.830 50.000 5.05 9.93 41.83 1.78
6580 16074 2.477245 TGCATATAGGGTGCCGGATAT 58.523 47.619 5.05 0.00 41.83 1.63
6581 16075 1.945580 TGCATATAGGGTGCCGGATA 58.054 50.000 5.05 0.00 41.83 2.59
6582 16076 1.289160 ATGCATATAGGGTGCCGGAT 58.711 50.000 5.05 0.00 41.83 4.18
6583 16077 1.553248 GTATGCATATAGGGTGCCGGA 59.447 52.381 10.16 0.00 41.83 5.14
6584 16078 1.277842 TGTATGCATATAGGGTGCCGG 59.722 52.381 10.16 0.00 41.83 6.13
6585 16079 2.760634 TGTATGCATATAGGGTGCCG 57.239 50.000 10.16 0.00 41.83 5.69
6586 16080 5.476599 TGAATTTGTATGCATATAGGGTGCC 59.523 40.000 10.16 0.00 41.83 5.01
6587 16081 6.573664 TGAATTTGTATGCATATAGGGTGC 57.426 37.500 10.16 0.00 42.81 5.01
6588 16082 7.031372 GCATGAATTTGTATGCATATAGGGTG 58.969 38.462 10.16 3.81 46.72 4.61
6589 16083 7.161773 GCATGAATTTGTATGCATATAGGGT 57.838 36.000 10.16 0.00 46.72 4.34
6602 16096 8.959548 TCTGTTACAGATATTGCATGAATTTGT 58.040 29.630 11.42 0.00 35.39 2.83
6603 16097 9.229784 GTCTGTTACAGATATTGCATGAATTTG 57.770 33.333 18.52 0.00 42.73 2.32
6604 16098 8.959548 TGTCTGTTACAGATATTGCATGAATTT 58.040 29.630 18.52 0.00 42.73 1.82
6605 16099 8.510243 TGTCTGTTACAGATATTGCATGAATT 57.490 30.769 18.52 0.00 42.73 2.17
6606 16100 8.687292 ATGTCTGTTACAGATATTGCATGAAT 57.313 30.769 18.52 0.00 42.73 2.57
6607 16101 9.783081 ATATGTCTGTTACAGATATTGCATGAA 57.217 29.630 25.18 9.69 42.73 2.57
6616 16110 9.908152 CATCGGTTTATATGTCTGTTACAGATA 57.092 33.333 18.52 16.09 42.73 1.98
6617 16111 8.421784 ACATCGGTTTATATGTCTGTTACAGAT 58.578 33.333 18.52 6.03 42.73 2.90
6618 16112 7.778083 ACATCGGTTTATATGTCTGTTACAGA 58.222 34.615 11.42 11.42 42.70 3.41
6619 16113 8.062231 GACATCGGTTTATATGTCTGTTACAG 57.938 38.462 5.94 5.94 45.52 2.74
6620 16114 7.997107 GACATCGGTTTATATGTCTGTTACA 57.003 36.000 7.93 0.00 45.52 2.41
6628 16122 7.258441 CGGATATGAGACATCGGTTTATATGT 58.742 38.462 0.00 0.00 39.00 2.29
6629 16123 6.697455 CCGGATATGAGACATCGGTTTATATG 59.303 42.308 0.00 0.00 0.00 1.78
6630 16124 6.683110 GCCGGATATGAGACATCGGTTTATAT 60.683 42.308 5.05 0.00 0.00 0.86
6631 16125 5.393787 GCCGGATATGAGACATCGGTTTATA 60.394 44.000 5.05 0.00 0.00 0.98
6632 16126 4.620803 GCCGGATATGAGACATCGGTTTAT 60.621 45.833 5.05 0.00 0.00 1.40
6633 16127 3.305813 GCCGGATATGAGACATCGGTTTA 60.306 47.826 5.05 0.00 0.00 2.01
6634 16128 2.548067 GCCGGATATGAGACATCGGTTT 60.548 50.000 5.05 0.00 0.00 3.27
6635 16129 1.000955 GCCGGATATGAGACATCGGTT 59.999 52.381 5.05 0.00 0.00 4.44
6636 16130 0.603569 GCCGGATATGAGACATCGGT 59.396 55.000 5.05 0.00 0.00 4.69
6637 16131 0.603065 TGCCGGATATGAGACATCGG 59.397 55.000 5.05 0.00 0.00 4.18
6638 16132 1.670087 GGTGCCGGATATGAGACATCG 60.670 57.143 5.05 0.00 0.00 3.84
6639 16133 1.338200 GGGTGCCGGATATGAGACATC 60.338 57.143 5.05 0.00 0.00 3.06
6640 16134 0.687354 GGGTGCCGGATATGAGACAT 59.313 55.000 5.05 0.00 0.00 3.06
6641 16135 0.398522 AGGGTGCCGGATATGAGACA 60.399 55.000 5.05 0.00 0.00 3.41
6642 16136 1.629043 TAGGGTGCCGGATATGAGAC 58.371 55.000 5.05 0.00 0.00 3.36
6643 16137 2.623418 ATAGGGTGCCGGATATGAGA 57.377 50.000 5.05 0.00 0.00 3.27
6644 16138 3.493350 GCATATAGGGTGCCGGATATGAG 60.493 52.174 18.10 0.00 37.11 2.90
6645 16139 2.434336 GCATATAGGGTGCCGGATATGA 59.566 50.000 18.10 0.00 37.11 2.15
6646 16140 2.170397 TGCATATAGGGTGCCGGATATG 59.830 50.000 5.05 9.93 41.83 1.78
6647 16141 2.477245 TGCATATAGGGTGCCGGATAT 58.523 47.619 5.05 0.00 41.83 1.63
6648 16142 1.945580 TGCATATAGGGTGCCGGATA 58.054 50.000 5.05 0.00 41.83 2.59
6649 16143 1.289160 ATGCATATAGGGTGCCGGAT 58.711 50.000 5.05 0.00 41.83 4.18
6650 16144 1.553248 GTATGCATATAGGGTGCCGGA 59.447 52.381 10.16 0.00 41.83 5.14
6651 16145 1.277842 TGTATGCATATAGGGTGCCGG 59.722 52.381 10.16 0.00 41.83 6.13
6652 16146 2.760634 TGTATGCATATAGGGTGCCG 57.239 50.000 10.16 0.00 41.83 5.69
6653 16147 5.476599 TGAATTTGTATGCATATAGGGTGCC 59.523 40.000 10.16 0.00 41.83 5.01
6654 16148 6.573664 TGAATTTGTATGCATATAGGGTGC 57.426 37.500 10.16 0.00 42.81 5.01
6655 16149 7.031372 GCATGAATTTGTATGCATATAGGGTG 58.969 38.462 10.16 3.81 46.72 4.61
6656 16150 7.161773 GCATGAATTTGTATGCATATAGGGT 57.838 36.000 10.16 0.00 46.72 4.34
6669 16163 8.959548 TCTGTTACAGATATTGCATGAATTTGT 58.040 29.630 11.42 0.00 35.39 2.83
6670 16164 9.229784 GTCTGTTACAGATATTGCATGAATTTG 57.770 33.333 18.52 0.00 42.73 2.32
6671 16165 8.959548 TGTCTGTTACAGATATTGCATGAATTT 58.040 29.630 18.52 0.00 42.73 1.82
6672 16166 8.510243 TGTCTGTTACAGATATTGCATGAATT 57.490 30.769 18.52 0.00 42.73 2.17
6673 16167 8.687292 ATGTCTGTTACAGATATTGCATGAAT 57.313 30.769 18.52 0.00 42.73 2.57
6674 16168 9.783081 ATATGTCTGTTACAGATATTGCATGAA 57.217 29.630 25.18 9.69 42.73 2.57
6685 16179 9.740239 GTTATCGGTTTATATGTCTGTTACAGA 57.260 33.333 11.42 11.42 42.70 3.41
6686 16180 9.524106 TGTTATCGGTTTATATGTCTGTTACAG 57.476 33.333 5.94 5.94 42.70 2.74
6687 16181 9.872721 TTGTTATCGGTTTATATGTCTGTTACA 57.127 29.630 0.00 0.00 43.86 2.41
6693 16187 6.480981 CCCGTTTGTTATCGGTTTATATGTCT 59.519 38.462 0.00 0.00 44.51 3.41
6738 16232 4.151121 TGCCTGTTTGATGATCTTTTGGA 58.849 39.130 0.00 0.00 0.00 3.53
6739 16233 4.524316 TGCCTGTTTGATGATCTTTTGG 57.476 40.909 0.00 0.00 0.00 3.28
6757 16251 4.335315 TCATTGAACTCCGTGAATTATGCC 59.665 41.667 0.00 0.00 0.00 4.40
6768 16262 3.073678 TGTGTTGGATCATTGAACTCCG 58.926 45.455 0.00 0.00 31.36 4.63
6784 16278 4.973168 ACCATGTAGAGTCACAATGTGTT 58.027 39.130 13.55 3.11 34.79 3.32
6808 16302 9.355916 GCCCTCTCCTTTTATATAATCAAGTTT 57.644 33.333 0.00 0.00 0.00 2.66
6826 16320 0.978146 TGGTGAAGCTAGCCCTCTCC 60.978 60.000 20.80 20.80 0.00 3.71
6852 16346 1.901464 GAAAGGCAAAGGGACGGCA 60.901 57.895 0.00 0.00 0.00 5.69
6935 16429 1.455217 TCCGATTCCTCCTCCGACC 60.455 63.158 0.00 0.00 0.00 4.79
7056 16550 1.002868 ATCAACGCCAAGCAGCTCT 60.003 52.632 0.00 0.00 0.00 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.