Multiple sequence alignment - TraesCS3B01G579900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G579900 chr3B 100.000 3933 0 0 1 3933 809178401 809174469 0.000000e+00 7263.0
1 TraesCS3B01G579900 chr3B 94.032 1575 63 19 432 1979 39352146 39350576 0.000000e+00 2359.0
2 TraesCS3B01G579900 chr3B 95.565 744 16 4 2673 3407 39350576 39349841 0.000000e+00 1175.0
3 TraesCS3B01G579900 chr3B 86.977 860 81 16 660 1515 615879673 615880505 0.000000e+00 939.0
4 TraesCS3B01G579900 chr3B 83.073 768 92 18 436 1166 42344901 42344135 0.000000e+00 664.0
5 TraesCS3B01G579900 chr3B 90.390 333 31 1 2065 2396 615880894 615881226 1.680000e-118 436.0
6 TraesCS3B01G579900 chr3B 90.203 296 29 0 2100 2395 42343087 42342792 1.710000e-103 387.0
7 TraesCS3B01G579900 chr3B 94.886 176 9 0 3563 3738 39349682 39349507 3.870000e-70 276.0
8 TraesCS3B01G579900 chr3B 89.151 212 20 3 435 644 615879378 615879588 1.080000e-65 261.0
9 TraesCS3B01G579900 chr3B 96.178 157 6 0 3739 3895 39349446 39349290 1.400000e-64 257.0
10 TraesCS3B01G579900 chr3B 95.070 142 6 1 3421 3561 39349858 39349717 5.120000e-54 222.0
11 TraesCS3B01G579900 chr7D 95.452 2199 64 13 435 2604 58146565 58148756 0.000000e+00 3474.0
12 TraesCS3B01G579900 chr7D 96.129 1085 31 5 640 1713 443156475 443157559 0.000000e+00 1760.0
13 TraesCS3B01G579900 chr7D 96.735 980 25 4 2022 3000 443157540 443158513 0.000000e+00 1626.0
14 TraesCS3B01G579900 chr7D 98.413 441 6 1 2597 3036 58149909 58150349 0.000000e+00 774.0
15 TraesCS3B01G579900 chr7D 95.026 382 8 5 3033 3407 58150735 58151112 1.220000e-164 590.0
16 TraesCS3B01G579900 chr7D 97.549 204 4 1 3204 3407 443158993 443159195 8.090000e-92 348.0
17 TraesCS3B01G579900 chr7D 97.191 178 5 0 3563 3740 58151269 58151446 6.390000e-78 302.0
18 TraesCS3B01G579900 chr7D 94.898 196 5 1 3738 3933 58151483 58151673 6.390000e-78 302.0
19 TraesCS3B01G579900 chr7D 96.629 178 4 2 435 610 443147268 443147445 1.070000e-75 294.0
20 TraesCS3B01G579900 chr7D 95.954 173 7 0 3563 3735 443159352 443159524 8.320000e-72 281.0
21 TraesCS3B01G579900 chr7D 97.931 145 2 1 3421 3564 443159178 443159322 2.350000e-62 250.0
22 TraesCS3B01G579900 chr7D 91.237 194 2 6 3750 3933 443159576 443159764 2.350000e-62 250.0
23 TraesCS3B01G579900 chr7D 96.552 145 4 1 3421 3564 58151095 58151239 5.080000e-59 239.0
24 TraesCS3B01G579900 chr7D 94.792 96 3 2 1 96 148166058 148165965 8.810000e-32 148.0
25 TraesCS3B01G579900 chr7D 97.531 81 2 0 2985 3065 443158875 443158955 5.300000e-29 139.0
26 TraesCS3B01G579900 chr7D 90.110 91 6 3 1 89 566871735 566871824 8.930000e-22 115.0
27 TraesCS3B01G579900 chr3A 95.118 1946 62 15 1126 3040 738733961 738735904 0.000000e+00 3037.0
28 TraesCS3B01G579900 chr3A 83.423 1116 126 37 435 1515 1123579 1122488 0.000000e+00 981.0
29 TraesCS3B01G579900 chr3A 92.582 364 16 6 728 1086 738733283 738733640 2.710000e-141 512.0
30 TraesCS3B01G579900 chr3A 93.605 344 8 7 3071 3407 738744877 738745213 5.870000e-138 501.0
31 TraesCS3B01G579900 chr3A 90.909 297 22 2 2100 2396 1122064 1121773 1.020000e-105 394.0
32 TraesCS3B01G579900 chr3A 94.037 218 7 3 435 646 738731897 738732114 3.790000e-85 326.0
33 TraesCS3B01G579900 chr3A 94.483 145 7 1 3421 3564 738745196 738745340 5.120000e-54 222.0
34 TraesCS3B01G579900 chr3A 95.455 110 5 0 3631 3740 738745729 738745838 4.040000e-40 176.0
35 TraesCS3B01G579900 chr3A 92.000 75 2 1 3563 3633 738745373 738745447 6.950000e-18 102.0
36 TraesCS3B01G579900 chr3A 89.831 59 1 1 3873 3931 738748701 738748754 1.960000e-08 71.3
37 TraesCS3B01G579900 chr3A 100.000 32 0 0 3042 3073 738744686 738744717 4.240000e-05 60.2
38 TraesCS3B01G579900 chr7A 91.441 1110 84 7 1289 2395 522336132 522335031 0.000000e+00 1513.0
39 TraesCS3B01G579900 chr7A 87.406 802 64 19 435 1213 522336952 522336165 0.000000e+00 887.0
40 TraesCS3B01G579900 chr7A 86.111 72 10 0 19 90 310594977 310594906 1.170000e-10 78.7
41 TraesCS3B01G579900 chr1A 92.766 1023 50 10 497 1496 310880897 310879876 0.000000e+00 1458.0
42 TraesCS3B01G579900 chr1A 95.052 869 21 5 2548 3407 310874334 310873479 0.000000e+00 1347.0
43 TraesCS3B01G579900 chr1A 94.944 178 9 0 3563 3740 310873322 310873145 2.990000e-71 279.0
44 TraesCS3B01G579900 chr1A 96.203 158 6 0 3738 3895 310873108 310872951 3.900000e-65 259.0
45 TraesCS3B01G579900 chr1A 93.243 148 9 1 3421 3567 310873496 310873349 2.380000e-52 217.0
46 TraesCS3B01G579900 chr1A 92.623 122 5 3 2437 2557 310879591 310879473 5.220000e-39 172.0
47 TraesCS3B01G579900 chr7B 93.673 980 42 7 2439 3407 733369552 733368582 0.000000e+00 1448.0
48 TraesCS3B01G579900 chr7B 88.081 344 17 4 3421 3740 733368599 733368256 1.710000e-103 387.0
49 TraesCS3B01G579900 chr7B 96.571 175 6 0 3738 3912 733368219 733368045 1.380000e-74 291.0
50 TraesCS3B01G579900 chr7B 88.542 96 7 2 3291 3384 435128388 435128295 3.210000e-21 113.0
51 TraesCS3B01G579900 chr7B 81.053 95 12 3 1 90 713567806 713567899 1.960000e-08 71.3
52 TraesCS3B01G579900 chr3D 90.491 326 27 1 2599 2924 77394111 77393790 1.010000e-115 427.0
53 TraesCS3B01G579900 chr3D 87.278 338 24 5 2930 3251 77393752 77393418 6.210000e-98 368.0
54 TraesCS3B01G579900 chr3D 91.346 104 8 1 3421 3523 77389643 77389540 1.470000e-29 141.0
55 TraesCS3B01G579900 chr1D 91.667 288 23 1 2110 2396 384916947 384916660 7.920000e-107 398.0
56 TraesCS3B01G579900 chr6B 89.189 296 32 0 2100 2395 287144808 287144513 1.730000e-98 370.0
57 TraesCS3B01G579900 chr6B 77.926 376 58 10 435 785 286997718 286998093 1.110000e-50 211.0
58 TraesCS3B01G579900 chr6B 85.047 107 6 4 3284 3389 543229334 543229237 2.500000e-17 100.0
59 TraesCS3B01G579900 chr6B 80.612 98 13 2 1 92 716573482 716573579 1.960000e-08 71.3
60 TraesCS3B01G579900 chr5A 87.037 324 32 3 2601 2924 132291972 132292285 1.340000e-94 357.0
61 TraesCS3B01G579900 chr5A 85.232 237 15 11 2930 3162 132297519 132297739 3.950000e-55 226.0
62 TraesCS3B01G579900 chr5A 93.130 131 8 1 3767 3897 132298055 132298184 1.440000e-44 191.0
63 TraesCS3B01G579900 chr5A 91.346 104 8 1 3421 3523 132297908 132298011 1.470000e-29 141.0
64 TraesCS3B01G579900 chr1B 82.675 329 27 17 3438 3740 617268934 617269258 8.380000e-67 265.0
65 TraesCS3B01G579900 chr1B 91.327 196 11 5 3738 3931 617039510 617039701 3.010000e-66 263.0
66 TraesCS3B01G579900 chr5D 97.279 147 1 3 435 579 453340929 453341074 3.040000e-61 246.0
67 TraesCS3B01G579900 chr6D 95.506 89 4 0 1 89 42932807 42932895 4.100000e-30 143.0
68 TraesCS3B01G579900 chr6D 87.368 95 4 3 3291 3385 469612294 469612208 6.950000e-18 102.0
69 TraesCS3B01G579900 chr2D 84.615 91 12 1 1 89 578445739 578445649 5.410000e-14 89.8
70 TraesCS3B01G579900 chr2A 90.164 61 6 0 30 90 672997885 672997825 3.260000e-11 80.5
71 TraesCS3B01G579900 chr4B 81.915 94 11 3 1 89 624160481 624160573 1.520000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G579900 chr3B 809174469 809178401 3932 True 7263.000000 7263 100.000000 1 3933 1 chr3B.!!$R1 3932
1 TraesCS3B01G579900 chr3B 39349290 39352146 2856 True 857.800000 2359 95.146200 432 3895 5 chr3B.!!$R2 3463
2 TraesCS3B01G579900 chr3B 615879378 615881226 1848 False 545.333333 939 88.839333 435 2396 3 chr3B.!!$F1 1961
3 TraesCS3B01G579900 chr3B 42342792 42344901 2109 True 525.500000 664 86.638000 436 2395 2 chr3B.!!$R3 1959
4 TraesCS3B01G579900 chr7D 58146565 58151673 5108 False 946.833333 3474 96.255333 435 3933 6 chr7D.!!$F3 3498
5 TraesCS3B01G579900 chr7D 443156475 443159764 3289 False 664.857143 1760 96.152286 640 3933 7 chr7D.!!$F4 3293
6 TraesCS3B01G579900 chr3A 738731897 738735904 4007 False 1291.666667 3037 93.912333 435 3040 3 chr3A.!!$F1 2605
7 TraesCS3B01G579900 chr3A 1121773 1123579 1806 True 687.500000 981 87.166000 435 2396 2 chr3A.!!$R1 1961
8 TraesCS3B01G579900 chr7A 522335031 522336952 1921 True 1200.000000 1513 89.423500 435 2395 2 chr7A.!!$R2 1960
9 TraesCS3B01G579900 chr1A 310879473 310880897 1424 True 815.000000 1458 92.694500 497 2557 2 chr1A.!!$R2 2060
10 TraesCS3B01G579900 chr1A 310872951 310874334 1383 True 525.500000 1347 94.860500 2548 3895 4 chr1A.!!$R1 1347
11 TraesCS3B01G579900 chr7B 733368045 733369552 1507 True 708.666667 1448 92.775000 2439 3912 3 chr7B.!!$R2 1473
12 TraesCS3B01G579900 chr3D 77389540 77394111 4571 True 312.000000 427 89.705000 2599 3523 3 chr3D.!!$R1 924

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
201 202 0.035056 CCTAAGCACAGGGGGTCTTG 60.035 60.0 0.0 0.0 31.47 3.02 F
215 216 0.036732 GTCTTGCTGGTGGTGATGGA 59.963 55.0 0.0 0.0 0.00 3.41 F
216 217 0.325933 TCTTGCTGGTGGTGATGGAG 59.674 55.0 0.0 0.0 0.00 3.86 F
226 227 0.679505 GGTGATGGAGCGTGGCTATA 59.320 55.0 0.0 0.0 39.88 1.31 F
1843 3853 0.693049 AGAGCTGGTTTCCGATGGTT 59.307 50.0 0.0 0.0 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1999 4015 0.800012 GTATGCGCCGGAAAACTTCA 59.200 50.000 5.05 0.0 0.00 3.02 R
2098 4118 2.670934 CACCCTGAGCCAGTGTGC 60.671 66.667 5.24 0.0 33.70 4.57 R
2290 4310 2.718563 CCGTATACCAAGCCCAGTTTT 58.281 47.619 0.00 0.0 0.00 2.43 R
2299 4319 0.179094 TTCGCCAGCCGTATACCAAG 60.179 55.000 0.00 0.0 38.35 3.61 R
3871 11746 1.891919 GCTGGCCACAAGTTCGACA 60.892 57.895 0.00 0.0 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.760530 TGCAATGCTCCTATGACTTACT 57.239 40.909 6.82 0.00 0.00 2.24
23 24 4.445453 TGCAATGCTCCTATGACTTACTG 58.555 43.478 6.82 0.00 0.00 2.74
24 25 3.812053 GCAATGCTCCTATGACTTACTGG 59.188 47.826 0.00 0.00 0.00 4.00
25 26 4.443457 GCAATGCTCCTATGACTTACTGGA 60.443 45.833 0.00 0.00 0.00 3.86
26 27 5.744300 GCAATGCTCCTATGACTTACTGGAT 60.744 44.000 0.00 0.00 0.00 3.41
27 28 5.736951 ATGCTCCTATGACTTACTGGATC 57.263 43.478 0.00 0.00 0.00 3.36
28 29 3.898123 TGCTCCTATGACTTACTGGATCC 59.102 47.826 4.20 4.20 0.00 3.36
29 30 3.057174 GCTCCTATGACTTACTGGATCCG 60.057 52.174 7.39 4.62 0.00 4.18
30 31 4.399219 CTCCTATGACTTACTGGATCCGA 58.601 47.826 7.39 0.00 0.00 4.55
31 32 4.999310 TCCTATGACTTACTGGATCCGAT 58.001 43.478 7.39 0.00 0.00 4.18
32 33 6.135819 TCCTATGACTTACTGGATCCGATA 57.864 41.667 7.39 0.00 0.00 2.92
33 34 6.732487 TCCTATGACTTACTGGATCCGATAT 58.268 40.000 7.39 0.00 0.00 1.63
34 35 6.603599 TCCTATGACTTACTGGATCCGATATG 59.396 42.308 7.39 6.82 0.00 1.78
35 36 6.603599 CCTATGACTTACTGGATCCGATATGA 59.396 42.308 7.39 0.00 0.00 2.15
36 37 7.286546 CCTATGACTTACTGGATCCGATATGAT 59.713 40.741 7.39 0.00 0.00 2.45
37 38 6.918067 TGACTTACTGGATCCGATATGATT 57.082 37.500 7.39 0.00 0.00 2.57
38 39 6.691508 TGACTTACTGGATCCGATATGATTG 58.308 40.000 7.39 0.00 0.00 2.67
39 40 6.267699 TGACTTACTGGATCCGATATGATTGT 59.732 38.462 7.39 0.00 0.00 2.71
40 41 7.067496 ACTTACTGGATCCGATATGATTGTT 57.933 36.000 7.39 0.00 0.00 2.83
41 42 6.931281 ACTTACTGGATCCGATATGATTGTTG 59.069 38.462 7.39 0.00 0.00 3.33
42 43 4.067896 ACTGGATCCGATATGATTGTTGC 58.932 43.478 7.39 0.00 0.00 4.17
43 44 3.411446 TGGATCCGATATGATTGTTGCC 58.589 45.455 7.39 0.00 0.00 4.52
44 45 2.416547 GGATCCGATATGATTGTTGCCG 59.583 50.000 0.00 0.00 0.00 5.69
45 46 1.877637 TCCGATATGATTGTTGCCGG 58.122 50.000 0.00 0.00 37.08 6.13
46 47 0.238289 CCGATATGATTGTTGCCGGC 59.762 55.000 22.73 22.73 0.00 6.13
47 48 0.943673 CGATATGATTGTTGCCGGCA 59.056 50.000 29.03 29.03 0.00 5.69
48 49 1.069703 CGATATGATTGTTGCCGGCAG 60.070 52.381 30.75 9.54 0.00 4.85
49 50 0.670162 ATATGATTGTTGCCGGCAGC 59.330 50.000 33.65 33.65 44.14 5.25
82 83 2.046314 GGCAAGCCGCACTTCCTA 60.046 61.111 0.00 0.00 45.17 2.94
83 84 2.399356 GGCAAGCCGCACTTCCTAC 61.399 63.158 0.00 0.00 45.17 3.18
84 85 2.399356 GCAAGCCGCACTTCCTACC 61.399 63.158 0.00 0.00 41.79 3.18
85 86 1.296715 CAAGCCGCACTTCCTACCT 59.703 57.895 0.00 0.00 36.04 3.08
86 87 0.535335 CAAGCCGCACTTCCTACCTA 59.465 55.000 0.00 0.00 36.04 3.08
87 88 0.824759 AAGCCGCACTTCCTACCTAG 59.175 55.000 0.00 0.00 30.77 3.02
88 89 0.324460 AGCCGCACTTCCTACCTAGT 60.324 55.000 0.00 0.00 0.00 2.57
89 90 1.064166 AGCCGCACTTCCTACCTAGTA 60.064 52.381 0.00 0.00 0.00 1.82
90 91 1.962100 GCCGCACTTCCTACCTAGTAT 59.038 52.381 0.00 0.00 0.00 2.12
91 92 3.152341 GCCGCACTTCCTACCTAGTATA 58.848 50.000 0.00 0.00 0.00 1.47
92 93 3.190953 GCCGCACTTCCTACCTAGTATAG 59.809 52.174 0.00 0.00 38.80 1.31
93 94 4.396522 CCGCACTTCCTACCTAGTATAGT 58.603 47.826 0.00 0.00 36.82 2.12
94 95 4.826183 CCGCACTTCCTACCTAGTATAGTT 59.174 45.833 0.00 0.00 36.82 2.24
95 96 5.278364 CCGCACTTCCTACCTAGTATAGTTG 60.278 48.000 0.00 0.00 36.82 3.16
96 97 5.278364 CGCACTTCCTACCTAGTATAGTTGG 60.278 48.000 6.51 6.51 36.82 3.77
97 98 5.597594 GCACTTCCTACCTAGTATAGTTGGT 59.402 44.000 16.45 16.45 36.82 3.67
98 99 6.097981 GCACTTCCTACCTAGTATAGTTGGTT 59.902 42.308 17.26 4.30 36.82 3.67
99 100 7.683945 GCACTTCCTACCTAGTATAGTTGGTTC 60.684 44.444 17.26 0.00 36.82 3.62
100 101 6.838090 ACTTCCTACCTAGTATAGTTGGTTCC 59.162 42.308 17.26 0.00 36.82 3.62
101 102 6.603110 TCCTACCTAGTATAGTTGGTTCCT 57.397 41.667 17.26 0.00 36.82 3.36
102 103 6.608922 TCCTACCTAGTATAGTTGGTTCCTC 58.391 44.000 17.26 0.00 36.82 3.71
103 104 6.392245 TCCTACCTAGTATAGTTGGTTCCTCT 59.608 42.308 17.26 0.00 36.82 3.69
104 105 6.490721 CCTACCTAGTATAGTTGGTTCCTCTG 59.509 46.154 17.26 4.04 36.82 3.35
105 106 5.840081 ACCTAGTATAGTTGGTTCCTCTGT 58.160 41.667 7.77 0.00 36.82 3.41
106 107 5.657302 ACCTAGTATAGTTGGTTCCTCTGTG 59.343 44.000 7.77 0.00 36.82 3.66
107 108 5.069251 CCTAGTATAGTTGGTTCCTCTGTGG 59.931 48.000 0.25 0.00 36.82 4.17
108 109 4.426704 AGTATAGTTGGTTCCTCTGTGGT 58.573 43.478 0.00 0.00 37.07 4.16
109 110 3.703001 ATAGTTGGTTCCTCTGTGGTG 57.297 47.619 0.00 0.00 37.07 4.17
110 111 1.213296 AGTTGGTTCCTCTGTGGTGT 58.787 50.000 0.00 0.00 37.07 4.16
111 112 1.564348 AGTTGGTTCCTCTGTGGTGTT 59.436 47.619 0.00 0.00 37.07 3.32
112 113 1.947456 GTTGGTTCCTCTGTGGTGTTC 59.053 52.381 0.00 0.00 37.07 3.18
113 114 0.105964 TGGTTCCTCTGTGGTGTTCG 59.894 55.000 0.00 0.00 37.07 3.95
114 115 0.602905 GGTTCCTCTGTGGTGTTCGG 60.603 60.000 0.00 0.00 37.07 4.30
115 116 1.070786 TTCCTCTGTGGTGTTCGGC 59.929 57.895 0.00 0.00 37.07 5.54
116 117 1.407656 TTCCTCTGTGGTGTTCGGCT 61.408 55.000 0.00 0.00 37.07 5.52
117 118 0.541063 TCCTCTGTGGTGTTCGGCTA 60.541 55.000 0.00 0.00 37.07 3.93
118 119 0.537188 CCTCTGTGGTGTTCGGCTAT 59.463 55.000 0.00 0.00 0.00 2.97
119 120 1.754803 CCTCTGTGGTGTTCGGCTATA 59.245 52.381 0.00 0.00 0.00 1.31
120 121 2.365617 CCTCTGTGGTGTTCGGCTATAT 59.634 50.000 0.00 0.00 0.00 0.86
121 122 3.384668 CTCTGTGGTGTTCGGCTATATG 58.615 50.000 0.00 0.00 0.00 1.78
122 123 1.867233 CTGTGGTGTTCGGCTATATGC 59.133 52.381 0.00 0.00 41.94 3.14
123 124 1.484653 TGTGGTGTTCGGCTATATGCT 59.515 47.619 0.00 0.00 42.39 3.79
138 139 3.943967 GCTGGAGTAGCGCTATGC 58.056 61.111 21.96 15.06 43.63 3.14
147 148 4.849310 GCGCTATGCCGTTGGGGA 62.849 66.667 0.00 0.00 38.47 4.81
148 149 2.588877 CGCTATGCCGTTGGGGAG 60.589 66.667 0.00 0.00 36.93 4.30
149 150 2.902343 GCTATGCCGTTGGGGAGC 60.902 66.667 0.00 0.00 36.93 4.70
150 151 2.588877 CTATGCCGTTGGGGAGCG 60.589 66.667 0.00 0.00 36.93 5.03
151 152 3.078196 TATGCCGTTGGGGAGCGA 61.078 61.111 0.00 0.00 36.93 4.93
152 153 2.978452 CTATGCCGTTGGGGAGCGAG 62.978 65.000 0.00 0.00 36.93 5.03
158 159 4.020617 TTGGGGAGCGAGGCACTG 62.021 66.667 0.00 0.00 41.55 3.66
188 189 2.305405 CAGCGTCTGATGCCTAAGC 58.695 57.895 17.76 0.00 34.52 3.09
197 198 2.531685 TGCCTAAGCACAGGGGGT 60.532 61.111 5.82 0.00 46.52 4.95
198 199 2.272471 GCCTAAGCACAGGGGGTC 59.728 66.667 5.82 0.00 39.53 4.46
199 200 2.301738 GCCTAAGCACAGGGGGTCT 61.302 63.158 5.82 0.00 39.53 3.85
200 201 1.853250 GCCTAAGCACAGGGGGTCTT 61.853 60.000 5.82 0.00 39.53 3.01
201 202 0.035056 CCTAAGCACAGGGGGTCTTG 60.035 60.000 0.00 0.00 31.47 3.02
202 203 0.678048 CTAAGCACAGGGGGTCTTGC 60.678 60.000 0.00 0.00 35.08 4.01
203 204 2.856000 AGCACAGGGGGTCTTGCT 60.856 61.111 0.00 0.00 40.53 3.91
204 205 2.674380 GCACAGGGGGTCTTGCTG 60.674 66.667 0.00 0.00 32.00 4.41
205 206 2.034687 CACAGGGGGTCTTGCTGG 59.965 66.667 0.00 0.00 0.00 4.85
206 207 2.450502 ACAGGGGGTCTTGCTGGT 60.451 61.111 0.00 0.00 0.00 4.00
207 208 2.034687 CAGGGGGTCTTGCTGGTG 59.965 66.667 0.00 0.00 0.00 4.17
208 209 3.260100 AGGGGGTCTTGCTGGTGG 61.260 66.667 0.00 0.00 0.00 4.61
209 210 3.580319 GGGGGTCTTGCTGGTGGT 61.580 66.667 0.00 0.00 0.00 4.16
210 211 2.282462 GGGGTCTTGCTGGTGGTG 60.282 66.667 0.00 0.00 0.00 4.17
211 212 2.829384 GGGGTCTTGCTGGTGGTGA 61.829 63.158 0.00 0.00 0.00 4.02
212 213 1.380302 GGGTCTTGCTGGTGGTGAT 59.620 57.895 0.00 0.00 0.00 3.06
213 214 0.962356 GGGTCTTGCTGGTGGTGATG 60.962 60.000 0.00 0.00 0.00 3.07
214 215 0.962356 GGTCTTGCTGGTGGTGATGG 60.962 60.000 0.00 0.00 0.00 3.51
215 216 0.036732 GTCTTGCTGGTGGTGATGGA 59.963 55.000 0.00 0.00 0.00 3.41
216 217 0.325933 TCTTGCTGGTGGTGATGGAG 59.674 55.000 0.00 0.00 0.00 3.86
217 218 1.303561 TTGCTGGTGGTGATGGAGC 60.304 57.895 0.00 0.00 0.00 4.70
218 219 2.821366 GCTGGTGGTGATGGAGCG 60.821 66.667 0.00 0.00 0.00 5.03
219 220 2.665000 CTGGTGGTGATGGAGCGT 59.335 61.111 0.00 0.00 0.00 5.07
220 221 1.742880 CTGGTGGTGATGGAGCGTG 60.743 63.158 0.00 0.00 0.00 5.34
221 222 2.436646 GGTGGTGATGGAGCGTGG 60.437 66.667 0.00 0.00 0.00 4.94
222 223 3.127533 GTGGTGATGGAGCGTGGC 61.128 66.667 0.00 0.00 0.00 5.01
223 224 3.321648 TGGTGATGGAGCGTGGCT 61.322 61.111 0.00 0.00 43.88 4.75
224 225 1.987306 TGGTGATGGAGCGTGGCTA 60.987 57.895 0.00 0.00 39.88 3.93
225 226 1.337384 TGGTGATGGAGCGTGGCTAT 61.337 55.000 0.00 0.00 39.88 2.97
226 227 0.679505 GGTGATGGAGCGTGGCTATA 59.320 55.000 0.00 0.00 39.88 1.31
227 228 1.276421 GGTGATGGAGCGTGGCTATAT 59.724 52.381 0.00 0.00 39.88 0.86
228 229 2.496070 GGTGATGGAGCGTGGCTATATA 59.504 50.000 0.00 0.00 39.88 0.86
229 230 3.512680 GTGATGGAGCGTGGCTATATAC 58.487 50.000 0.00 0.00 39.88 1.47
230 231 3.056821 GTGATGGAGCGTGGCTATATACA 60.057 47.826 0.00 0.00 39.88 2.29
231 232 3.769300 TGATGGAGCGTGGCTATATACAT 59.231 43.478 0.00 0.00 39.88 2.29
232 233 4.953579 TGATGGAGCGTGGCTATATACATA 59.046 41.667 0.00 0.00 39.88 2.29
233 234 4.713824 TGGAGCGTGGCTATATACATAC 57.286 45.455 0.00 0.00 39.88 2.39
234 235 4.083565 TGGAGCGTGGCTATATACATACA 58.916 43.478 0.00 0.00 39.88 2.29
235 236 4.525100 TGGAGCGTGGCTATATACATACAA 59.475 41.667 0.00 0.00 39.88 2.41
236 237 4.863131 GGAGCGTGGCTATATACATACAAC 59.137 45.833 0.00 0.00 39.88 3.32
237 238 4.817517 AGCGTGGCTATATACATACAACC 58.182 43.478 0.00 0.00 36.99 3.77
238 239 4.527038 AGCGTGGCTATATACATACAACCT 59.473 41.667 0.00 0.00 36.99 3.50
239 240 5.011738 AGCGTGGCTATATACATACAACCTT 59.988 40.000 0.00 0.00 36.99 3.50
240 241 5.699458 GCGTGGCTATATACATACAACCTTT 59.301 40.000 0.00 0.00 0.00 3.11
241 242 6.128634 GCGTGGCTATATACATACAACCTTTC 60.129 42.308 0.00 0.00 0.00 2.62
242 243 7.152645 CGTGGCTATATACATACAACCTTTCT 58.847 38.462 0.00 0.00 0.00 2.52
243 244 7.328737 CGTGGCTATATACATACAACCTTTCTC 59.671 40.741 0.00 0.00 0.00 2.87
244 245 7.328737 GTGGCTATATACATACAACCTTTCTCG 59.671 40.741 0.00 0.00 0.00 4.04
245 246 6.310711 GGCTATATACATACAACCTTTCTCGC 59.689 42.308 0.00 0.00 0.00 5.03
246 247 7.091443 GCTATATACATACAACCTTTCTCGCT 58.909 38.462 0.00 0.00 0.00 4.93
247 248 7.599245 GCTATATACATACAACCTTTCTCGCTT 59.401 37.037 0.00 0.00 0.00 4.68
248 249 7.948278 ATATACATACAACCTTTCTCGCTTC 57.052 36.000 0.00 0.00 0.00 3.86
249 250 3.335579 ACATACAACCTTTCTCGCTTCC 58.664 45.455 0.00 0.00 0.00 3.46
250 251 3.008049 ACATACAACCTTTCTCGCTTCCT 59.992 43.478 0.00 0.00 0.00 3.36
251 252 2.171341 ACAACCTTTCTCGCTTCCTC 57.829 50.000 0.00 0.00 0.00 3.71
252 253 1.416401 ACAACCTTTCTCGCTTCCTCA 59.584 47.619 0.00 0.00 0.00 3.86
253 254 2.039084 ACAACCTTTCTCGCTTCCTCAT 59.961 45.455 0.00 0.00 0.00 2.90
254 255 3.077359 CAACCTTTCTCGCTTCCTCATT 58.923 45.455 0.00 0.00 0.00 2.57
255 256 3.425162 ACCTTTCTCGCTTCCTCATTT 57.575 42.857 0.00 0.00 0.00 2.32
256 257 4.553330 ACCTTTCTCGCTTCCTCATTTA 57.447 40.909 0.00 0.00 0.00 1.40
257 258 5.104259 ACCTTTCTCGCTTCCTCATTTAT 57.896 39.130 0.00 0.00 0.00 1.40
258 259 5.501156 ACCTTTCTCGCTTCCTCATTTATT 58.499 37.500 0.00 0.00 0.00 1.40
259 260 5.355350 ACCTTTCTCGCTTCCTCATTTATTG 59.645 40.000 0.00 0.00 0.00 1.90
260 261 5.355350 CCTTTCTCGCTTCCTCATTTATTGT 59.645 40.000 0.00 0.00 0.00 2.71
261 262 6.538742 CCTTTCTCGCTTCCTCATTTATTGTA 59.461 38.462 0.00 0.00 0.00 2.41
262 263 7.227512 CCTTTCTCGCTTCCTCATTTATTGTAT 59.772 37.037 0.00 0.00 0.00 2.29
263 264 9.261180 CTTTCTCGCTTCCTCATTTATTGTATA 57.739 33.333 0.00 0.00 0.00 1.47
264 265 9.607988 TTTCTCGCTTCCTCATTTATTGTATAA 57.392 29.630 0.00 0.00 0.00 0.98
265 266 8.589335 TCTCGCTTCCTCATTTATTGTATAAC 57.411 34.615 0.00 0.00 0.00 1.89
266 267 8.201464 TCTCGCTTCCTCATTTATTGTATAACA 58.799 33.333 0.00 0.00 0.00 2.41
267 268 8.138365 TCGCTTCCTCATTTATTGTATAACAC 57.862 34.615 0.00 0.00 0.00 3.32
268 269 7.766738 TCGCTTCCTCATTTATTGTATAACACA 59.233 33.333 0.00 0.00 34.51 3.72
269 270 8.559536 CGCTTCCTCATTTATTGTATAACACAT 58.440 33.333 0.00 0.00 36.90 3.21
270 271 9.884465 GCTTCCTCATTTATTGTATAACACATC 57.116 33.333 0.00 0.00 36.90 3.06
303 304 9.606631 AAATTTATGTGCCAAAGTTTTCTAACA 57.393 25.926 0.00 0.00 36.70 2.41
304 305 9.606631 AATTTATGTGCCAAAGTTTTCTAACAA 57.393 25.926 0.00 0.00 36.70 2.83
305 306 7.995463 TTATGTGCCAAAGTTTTCTAACAAC 57.005 32.000 0.00 0.00 36.70 3.32
306 307 5.652994 TGTGCCAAAGTTTTCTAACAACT 57.347 34.783 0.00 0.00 36.70 3.16
307 308 6.761099 TGTGCCAAAGTTTTCTAACAACTA 57.239 33.333 0.00 0.00 36.70 2.24
308 309 7.341445 TGTGCCAAAGTTTTCTAACAACTAT 57.659 32.000 0.00 0.00 36.70 2.12
309 310 7.422399 TGTGCCAAAGTTTTCTAACAACTATC 58.578 34.615 0.00 0.00 36.70 2.08
310 311 7.284489 TGTGCCAAAGTTTTCTAACAACTATCT 59.716 33.333 0.00 0.00 36.70 1.98
311 312 8.135529 GTGCCAAAGTTTTCTAACAACTATCTT 58.864 33.333 0.00 0.00 36.70 2.40
312 313 9.344772 TGCCAAAGTTTTCTAACAACTATCTTA 57.655 29.630 0.00 0.00 36.70 2.10
313 314 9.608617 GCCAAAGTTTTCTAACAACTATCTTAC 57.391 33.333 0.00 0.00 36.70 2.34
318 319 9.841295 AGTTTTCTAACAACTATCTTACAACCA 57.159 29.630 0.00 0.00 36.70 3.67
358 359 8.798859 AGAGAAGTTATGCAATAATTGTCTGT 57.201 30.769 9.43 0.00 41.51 3.41
359 360 8.887717 AGAGAAGTTATGCAATAATTGTCTGTC 58.112 33.333 9.43 0.00 41.51 3.51
360 361 8.565896 AGAAGTTATGCAATAATTGTCTGTCA 57.434 30.769 0.00 0.00 41.51 3.58
361 362 9.182214 AGAAGTTATGCAATAATTGTCTGTCAT 57.818 29.630 0.00 0.00 41.51 3.06
362 363 9.229784 GAAGTTATGCAATAATTGTCTGTCATG 57.770 33.333 0.00 0.00 41.51 3.07
363 364 8.510243 AGTTATGCAATAATTGTCTGTCATGA 57.490 30.769 0.00 0.00 41.51 3.07
364 365 8.959548 AGTTATGCAATAATTGTCTGTCATGAA 58.040 29.630 0.00 0.00 41.51 2.57
365 366 9.229784 GTTATGCAATAATTGTCTGTCATGAAG 57.770 33.333 0.00 0.00 41.51 3.02
366 367 6.822667 TGCAATAATTGTCTGTCATGAAGT 57.177 33.333 0.00 0.00 0.00 3.01
367 368 6.845302 TGCAATAATTGTCTGTCATGAAGTC 58.155 36.000 0.00 0.00 0.00 3.01
368 369 6.656270 TGCAATAATTGTCTGTCATGAAGTCT 59.344 34.615 0.00 0.00 0.00 3.24
369 370 7.175467 TGCAATAATTGTCTGTCATGAAGTCTT 59.825 33.333 0.00 0.00 0.00 3.01
370 371 8.025445 GCAATAATTGTCTGTCATGAAGTCTTT 58.975 33.333 0.00 0.00 0.00 2.52
371 372 9.338291 CAATAATTGTCTGTCATGAAGTCTTTG 57.662 33.333 0.00 0.00 0.00 2.77
372 373 4.818534 TTGTCTGTCATGAAGTCTTTGC 57.181 40.909 0.00 0.00 0.00 3.68
373 374 3.807553 TGTCTGTCATGAAGTCTTTGCA 58.192 40.909 0.00 0.00 0.00 4.08
374 375 4.392047 TGTCTGTCATGAAGTCTTTGCAT 58.608 39.130 0.00 0.00 0.00 3.96
375 376 4.453478 TGTCTGTCATGAAGTCTTTGCATC 59.547 41.667 0.00 0.00 0.00 3.91
376 377 4.694509 GTCTGTCATGAAGTCTTTGCATCT 59.305 41.667 0.00 0.00 0.00 2.90
377 378 4.934001 TCTGTCATGAAGTCTTTGCATCTC 59.066 41.667 0.00 0.00 0.00 2.75
378 379 4.005650 TGTCATGAAGTCTTTGCATCTCC 58.994 43.478 0.00 0.00 0.00 3.71
379 380 4.005650 GTCATGAAGTCTTTGCATCTCCA 58.994 43.478 0.00 0.00 0.00 3.86
380 381 4.639310 GTCATGAAGTCTTTGCATCTCCAT 59.361 41.667 0.00 0.00 0.00 3.41
381 382 5.125097 GTCATGAAGTCTTTGCATCTCCATT 59.875 40.000 0.00 0.00 0.00 3.16
382 383 6.317140 GTCATGAAGTCTTTGCATCTCCATTA 59.683 38.462 0.00 0.00 0.00 1.90
383 384 6.541278 TCATGAAGTCTTTGCATCTCCATTAG 59.459 38.462 0.00 0.00 0.00 1.73
384 385 5.809001 TGAAGTCTTTGCATCTCCATTAGT 58.191 37.500 0.00 0.00 0.00 2.24
385 386 6.240894 TGAAGTCTTTGCATCTCCATTAGTT 58.759 36.000 0.00 0.00 0.00 2.24
386 387 6.149973 TGAAGTCTTTGCATCTCCATTAGTTG 59.850 38.462 0.00 0.00 0.00 3.16
387 388 5.809001 AGTCTTTGCATCTCCATTAGTTGA 58.191 37.500 0.00 0.00 0.00 3.18
388 389 5.879223 AGTCTTTGCATCTCCATTAGTTGAG 59.121 40.000 0.00 0.00 0.00 3.02
389 390 5.877012 GTCTTTGCATCTCCATTAGTTGAGA 59.123 40.000 0.00 0.00 41.55 3.27
390 391 6.036953 GTCTTTGCATCTCCATTAGTTGAGAG 59.963 42.308 0.00 0.00 40.71 3.20
391 392 5.682234 TTGCATCTCCATTAGTTGAGAGA 57.318 39.130 0.00 0.00 40.71 3.10
392 393 5.273674 TGCATCTCCATTAGTTGAGAGAG 57.726 43.478 0.00 0.00 40.71 3.20
393 394 4.958581 TGCATCTCCATTAGTTGAGAGAGA 59.041 41.667 0.00 0.00 40.71 3.10
394 395 5.601729 TGCATCTCCATTAGTTGAGAGAGAT 59.398 40.000 0.00 0.00 40.71 2.75
396 397 6.669125 ATCTCCATTAGTTGAGAGAGATGG 57.331 41.667 0.00 0.00 40.71 3.51
397 398 5.523588 TCTCCATTAGTTGAGAGAGATGGT 58.476 41.667 0.00 0.00 36.35 3.55
398 399 6.673583 TCTCCATTAGTTGAGAGAGATGGTA 58.326 40.000 0.00 0.00 36.35 3.25
399 400 6.547880 TCTCCATTAGTTGAGAGAGATGGTAC 59.452 42.308 0.00 0.00 36.35 3.34
400 401 6.436027 TCCATTAGTTGAGAGAGATGGTACT 58.564 40.000 0.00 0.00 36.35 2.73
401 402 7.583625 TCCATTAGTTGAGAGAGATGGTACTA 58.416 38.462 0.00 0.00 36.35 1.82
402 403 7.502895 TCCATTAGTTGAGAGAGATGGTACTAC 59.497 40.741 0.00 0.00 36.35 2.73
403 404 7.504238 CCATTAGTTGAGAGAGATGGTACTACT 59.496 40.741 0.00 0.00 31.61 2.57
404 405 9.562408 CATTAGTTGAGAGAGATGGTACTACTA 57.438 37.037 0.00 0.00 0.00 1.82
408 409 8.940982 AGTTGAGAGAGATGGTACTACTATACT 58.059 37.037 0.00 0.00 0.00 2.12
409 410 9.211485 GTTGAGAGAGATGGTACTACTATACTC 57.789 40.741 0.00 9.33 0.00 2.59
410 411 7.909518 TGAGAGAGATGGTACTACTATACTCC 58.090 42.308 11.84 7.46 29.78 3.85
411 412 7.038160 TGAGAGAGATGGTACTACTATACTCCC 60.038 44.444 11.84 5.46 29.78 4.30
412 413 7.026874 AGAGAGATGGTACTACTATACTCCCT 58.973 42.308 11.84 0.00 29.78 4.20
413 414 7.181485 AGAGAGATGGTACTACTATACTCCCTC 59.819 44.444 11.84 0.00 29.78 4.30
414 415 7.026874 AGAGATGGTACTACTATACTCCCTCT 58.973 42.308 0.00 0.00 0.00 3.69
415 416 7.023171 AGATGGTACTACTATACTCCCTCTG 57.977 44.000 0.00 0.00 0.00 3.35
416 417 6.563379 AGATGGTACTACTATACTCCCTCTGT 59.437 42.308 0.00 0.00 0.00 3.41
417 418 6.587560 TGGTACTACTATACTCCCTCTGTT 57.412 41.667 0.00 0.00 0.00 3.16
418 419 6.978261 TGGTACTACTATACTCCCTCTGTTT 58.022 40.000 0.00 0.00 0.00 2.83
419 420 8.106017 TGGTACTACTATACTCCCTCTGTTTA 57.894 38.462 0.00 0.00 0.00 2.01
420 421 8.730948 TGGTACTACTATACTCCCTCTGTTTAT 58.269 37.037 0.00 0.00 0.00 1.40
424 425 9.796180 ACTACTATACTCCCTCTGTTTATAGTG 57.204 37.037 9.01 3.81 36.86 2.74
425 426 7.527568 ACTATACTCCCTCTGTTTATAGTGC 57.472 40.000 0.00 0.00 35.56 4.40
426 427 3.802948 ACTCCCTCTGTTTATAGTGCG 57.197 47.619 0.00 0.00 0.00 5.34
427 428 2.159085 ACTCCCTCTGTTTATAGTGCGC 60.159 50.000 0.00 0.00 0.00 6.09
428 429 1.828595 TCCCTCTGTTTATAGTGCGCA 59.171 47.619 5.66 5.66 0.00 6.09
429 430 2.434336 TCCCTCTGTTTATAGTGCGCAT 59.566 45.455 15.91 5.37 0.00 4.73
430 431 3.118408 TCCCTCTGTTTATAGTGCGCATT 60.118 43.478 15.91 13.31 0.00 3.56
431 432 3.002656 CCCTCTGTTTATAGTGCGCATTG 59.997 47.826 15.91 0.00 0.00 2.82
432 433 3.002656 CCTCTGTTTATAGTGCGCATTGG 59.997 47.826 15.91 0.00 0.00 3.16
433 434 2.354510 TCTGTTTATAGTGCGCATTGGC 59.645 45.455 15.91 0.00 0.00 4.52
585 603 2.688364 GGCTTCAATAGGCGTATTGC 57.312 50.000 26.80 18.35 43.70 3.56
617 636 2.999063 CCGTTCCTGTACCCCGGT 60.999 66.667 0.00 0.00 34.10 5.28
770 1987 2.744768 CCGCGGCTGCTCTCTTTTC 61.745 63.158 14.67 0.00 39.65 2.29
810 2027 3.192922 CGATTTCCCACCGGCGAC 61.193 66.667 9.30 0.00 0.00 5.19
935 2159 1.234615 GGCGCTAGGTTTGACTGCAA 61.235 55.000 7.64 0.00 0.00 4.08
1112 2337 3.374402 CTGGACGAGGAGGTGCGT 61.374 66.667 0.00 0.00 44.33 5.24
1154 2660 2.813172 TGCTTCATTCGCATCTGTTCAA 59.187 40.909 0.00 0.00 31.40 2.69
1402 2926 2.575532 ACAGTGTCTGTGATGTTTGGG 58.424 47.619 1.44 0.00 43.63 4.12
1444 2968 8.527810 GTTGGATCTTGAAATTATGGGTGTTTA 58.472 33.333 0.00 0.00 0.00 2.01
1485 3011 7.646922 GGCTGCAAAAATAGATAGAATGAGTTG 59.353 37.037 0.50 0.00 0.00 3.16
1540 3068 5.051374 CGTAACTAGAGCTGCTTTCTTATGC 60.051 44.000 2.53 0.00 0.00 3.14
1843 3853 0.693049 AGAGCTGGTTTCCGATGGTT 59.307 50.000 0.00 0.00 0.00 3.67
1999 4015 9.601810 TTGTGGTAGTAGGTATCTTGATCATAT 57.398 33.333 0.00 0.00 0.00 1.78
2098 4118 1.000385 TGGCTGTTCTTTTTGATGCGG 60.000 47.619 0.00 0.00 0.00 5.69
2212 4232 5.567423 GCTTATGCTGAAAAATGTGAAGGGT 60.567 40.000 0.00 0.00 36.03 4.34
2290 4310 8.547481 TGAGTTCTACAACCTATATTCATGGA 57.453 34.615 0.00 0.00 32.22 3.41
2299 4319 5.140454 ACCTATATTCATGGAAAACTGGGC 58.860 41.667 0.00 0.00 0.00 5.36
2335 4355 1.093159 GAAGAGCAGGCTCAATGTGG 58.907 55.000 22.12 0.00 44.99 4.17
2546 4569 6.024552 TCTTCCTGGTAAATTGTGAAATGC 57.975 37.500 0.00 0.00 0.00 3.56
2816 5999 8.918961 AAGTTATTTTGTCAAAATGTGTCGAA 57.081 26.923 26.74 13.38 41.01 3.71
3252 7274 7.171678 GCATAGTCATCTGTGGAAGTTAATACC 59.828 40.741 0.00 0.00 34.16 2.73
3402 11160 6.097981 GGAGTACCTGTTAACTACCTTGCTAT 59.902 42.308 7.22 0.00 0.00 2.97
3403 11161 7.110043 AGTACCTGTTAACTACCTTGCTATC 57.890 40.000 7.22 0.00 0.00 2.08
3404 11162 6.666546 AGTACCTGTTAACTACCTTGCTATCA 59.333 38.462 7.22 0.00 0.00 2.15
3405 11163 6.561519 ACCTGTTAACTACCTTGCTATCAT 57.438 37.500 7.22 0.00 0.00 2.45
3406 11164 6.958767 ACCTGTTAACTACCTTGCTATCATT 58.041 36.000 7.22 0.00 0.00 2.57
3407 11165 7.402862 ACCTGTTAACTACCTTGCTATCATTT 58.597 34.615 7.22 0.00 0.00 2.32
3408 11166 7.888546 ACCTGTTAACTACCTTGCTATCATTTT 59.111 33.333 7.22 0.00 0.00 1.82
3409 11167 8.739972 CCTGTTAACTACCTTGCTATCATTTTT 58.260 33.333 7.22 0.00 0.00 1.94
3430 11188 2.785713 TTTGCGGAAAACTACCTTGC 57.214 45.000 0.00 0.00 0.00 4.01
3431 11189 1.975660 TTGCGGAAAACTACCTTGCT 58.024 45.000 0.00 0.00 0.00 3.91
3432 11190 2.843401 TGCGGAAAACTACCTTGCTA 57.157 45.000 0.00 0.00 0.00 3.49
3665 11458 5.621228 GGCATTAATTTATCAAACTCGAGCG 59.379 40.000 13.61 1.03 0.00 5.03
3691 11484 1.588404 GTCATGGTTCATCTACGTGCG 59.412 52.381 0.00 0.00 0.00 5.34
3703 11496 2.096466 TCTACGTGCGCATTCAAACTTG 60.096 45.455 15.91 0.00 0.00 3.16
3716 11509 6.017440 GCATTCAAACTTGTGGTAGACTAACA 60.017 38.462 0.00 0.00 0.00 2.41
3826 11701 3.955471 TCAAGGGTGGCTAATGAAGAAG 58.045 45.455 0.00 0.00 0.00 2.85
3871 11746 2.636830 CATTGCTCCACGATTCCTCTT 58.363 47.619 0.00 0.00 0.00 2.85
3912 11787 0.529378 GGAATCCGGTCACGTACAGT 59.471 55.000 0.00 0.00 38.78 3.55
3913 11788 1.745087 GGAATCCGGTCACGTACAGTA 59.255 52.381 0.00 0.00 38.78 2.74
3914 11789 2.478539 GGAATCCGGTCACGTACAGTAC 60.479 54.545 0.00 0.00 38.78 2.73
3915 11790 1.825090 ATCCGGTCACGTACAGTACA 58.175 50.000 11.37 0.00 38.78 2.90
3916 11791 1.159285 TCCGGTCACGTACAGTACAG 58.841 55.000 11.37 6.32 38.78 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.877823 CAGTAAGTCATAGGAGCATTGCAA 59.122 41.667 11.91 0.00 0.00 4.08
1 2 4.445453 CAGTAAGTCATAGGAGCATTGCA 58.555 43.478 11.91 0.00 0.00 4.08
2 3 3.812053 CCAGTAAGTCATAGGAGCATTGC 59.188 47.826 0.00 0.00 0.00 3.56
3 4 5.282055 TCCAGTAAGTCATAGGAGCATTG 57.718 43.478 0.00 0.00 0.00 2.82
5 6 4.530161 GGATCCAGTAAGTCATAGGAGCAT 59.470 45.833 6.95 0.00 36.54 3.79
6 7 3.898123 GGATCCAGTAAGTCATAGGAGCA 59.102 47.826 6.95 0.00 36.54 4.26
7 8 3.057174 CGGATCCAGTAAGTCATAGGAGC 60.057 52.174 13.41 0.00 34.19 4.70
8 9 4.399219 TCGGATCCAGTAAGTCATAGGAG 58.601 47.826 13.41 0.00 0.00 3.69
9 10 4.448720 TCGGATCCAGTAAGTCATAGGA 57.551 45.455 13.41 0.00 0.00 2.94
10 11 6.603599 TCATATCGGATCCAGTAAGTCATAGG 59.396 42.308 13.41 0.52 0.00 2.57
11 12 7.631717 TCATATCGGATCCAGTAAGTCATAG 57.368 40.000 13.41 0.00 0.00 2.23
12 13 8.470002 CAATCATATCGGATCCAGTAAGTCATA 58.530 37.037 13.41 0.00 0.00 2.15
13 14 7.038729 ACAATCATATCGGATCCAGTAAGTCAT 60.039 37.037 13.41 0.00 0.00 3.06
14 15 6.267699 ACAATCATATCGGATCCAGTAAGTCA 59.732 38.462 13.41 0.00 0.00 3.41
15 16 6.692486 ACAATCATATCGGATCCAGTAAGTC 58.308 40.000 13.41 0.00 0.00 3.01
16 17 6.672266 ACAATCATATCGGATCCAGTAAGT 57.328 37.500 13.41 0.00 0.00 2.24
17 18 6.128445 GCAACAATCATATCGGATCCAGTAAG 60.128 42.308 13.41 1.06 0.00 2.34
18 19 5.700832 GCAACAATCATATCGGATCCAGTAA 59.299 40.000 13.41 0.00 0.00 2.24
19 20 5.237815 GCAACAATCATATCGGATCCAGTA 58.762 41.667 13.41 3.97 0.00 2.74
20 21 4.067896 GCAACAATCATATCGGATCCAGT 58.932 43.478 13.41 1.46 0.00 4.00
21 22 3.438087 GGCAACAATCATATCGGATCCAG 59.562 47.826 13.41 4.86 0.00 3.86
22 23 3.411446 GGCAACAATCATATCGGATCCA 58.589 45.455 13.41 0.00 0.00 3.41
23 24 2.416547 CGGCAACAATCATATCGGATCC 59.583 50.000 0.00 0.00 0.00 3.36
24 25 2.416547 CCGGCAACAATCATATCGGATC 59.583 50.000 0.00 0.00 38.42 3.36
25 26 2.426522 CCGGCAACAATCATATCGGAT 58.573 47.619 0.00 0.00 38.42 4.18
26 27 1.877637 CCGGCAACAATCATATCGGA 58.122 50.000 0.00 0.00 38.42 4.55
27 28 0.238289 GCCGGCAACAATCATATCGG 59.762 55.000 24.80 0.00 39.07 4.18
28 29 0.943673 TGCCGGCAACAATCATATCG 59.056 50.000 30.74 0.00 0.00 2.92
29 30 1.335324 GCTGCCGGCAACAATCATATC 60.335 52.381 32.09 5.48 41.35 1.63
30 31 0.670162 GCTGCCGGCAACAATCATAT 59.330 50.000 32.09 0.00 41.35 1.78
31 32 2.105984 GCTGCCGGCAACAATCATA 58.894 52.632 32.09 3.44 41.35 2.15
32 33 2.887360 GCTGCCGGCAACAATCAT 59.113 55.556 32.09 0.00 41.35 2.45
64 65 3.950794 TAGGAAGTGCGGCTTGCCG 62.951 63.158 27.32 27.32 45.25 5.69
65 66 2.046314 TAGGAAGTGCGGCTTGCC 60.046 61.111 0.00 0.75 45.25 4.52
66 67 2.399356 GGTAGGAAGTGCGGCTTGC 61.399 63.158 0.00 4.58 44.59 4.01
67 68 0.535335 TAGGTAGGAAGTGCGGCTTG 59.465 55.000 0.00 0.00 37.59 4.01
68 69 0.824759 CTAGGTAGGAAGTGCGGCTT 59.175 55.000 0.00 0.00 40.76 4.35
69 70 0.324460 ACTAGGTAGGAAGTGCGGCT 60.324 55.000 0.00 0.00 0.00 5.52
70 71 1.396653 TACTAGGTAGGAAGTGCGGC 58.603 55.000 0.00 0.00 0.00 6.53
71 72 4.396522 ACTATACTAGGTAGGAAGTGCGG 58.603 47.826 8.68 0.00 0.00 5.69
72 73 5.278364 CCAACTATACTAGGTAGGAAGTGCG 60.278 48.000 8.68 0.00 0.00 5.34
73 74 5.597594 ACCAACTATACTAGGTAGGAAGTGC 59.402 44.000 8.68 0.00 31.32 4.40
74 75 7.201893 GGAACCAACTATACTAGGTAGGAAGTG 60.202 44.444 8.68 2.92 33.15 3.16
75 76 6.838090 GGAACCAACTATACTAGGTAGGAAGT 59.162 42.308 8.68 0.00 33.15 3.01
76 77 7.068061 AGGAACCAACTATACTAGGTAGGAAG 58.932 42.308 8.68 1.18 33.15 3.46
77 78 6.989894 AGGAACCAACTATACTAGGTAGGAA 58.010 40.000 8.68 0.00 33.15 3.36
78 79 6.392245 AGAGGAACCAACTATACTAGGTAGGA 59.608 42.308 8.68 0.00 33.15 2.94
79 80 6.490721 CAGAGGAACCAACTATACTAGGTAGG 59.509 46.154 8.68 0.00 33.15 3.18
80 81 7.013464 CACAGAGGAACCAACTATACTAGGTAG 59.987 44.444 0.00 0.00 33.15 3.18
81 82 6.832384 CACAGAGGAACCAACTATACTAGGTA 59.168 42.308 0.00 0.00 33.15 3.08
82 83 5.657302 CACAGAGGAACCAACTATACTAGGT 59.343 44.000 0.00 0.00 35.47 3.08
83 84 5.069251 CCACAGAGGAACCAACTATACTAGG 59.931 48.000 0.00 0.00 41.22 3.02
84 85 5.657302 ACCACAGAGGAACCAACTATACTAG 59.343 44.000 0.00 0.00 41.22 2.57
85 86 5.421056 CACCACAGAGGAACCAACTATACTA 59.579 44.000 0.00 0.00 41.22 1.82
86 87 4.223032 CACCACAGAGGAACCAACTATACT 59.777 45.833 0.00 0.00 41.22 2.12
87 88 4.020485 ACACCACAGAGGAACCAACTATAC 60.020 45.833 0.00 0.00 41.22 1.47
88 89 4.164981 ACACCACAGAGGAACCAACTATA 58.835 43.478 0.00 0.00 41.22 1.31
89 90 2.979678 ACACCACAGAGGAACCAACTAT 59.020 45.455 0.00 0.00 41.22 2.12
90 91 2.404559 ACACCACAGAGGAACCAACTA 58.595 47.619 0.00 0.00 41.22 2.24
91 92 1.213296 ACACCACAGAGGAACCAACT 58.787 50.000 0.00 0.00 41.22 3.16
92 93 1.947456 GAACACCACAGAGGAACCAAC 59.053 52.381 0.00 0.00 41.22 3.77
93 94 1.474320 CGAACACCACAGAGGAACCAA 60.474 52.381 0.00 0.00 41.22 3.67
94 95 0.105964 CGAACACCACAGAGGAACCA 59.894 55.000 0.00 0.00 41.22 3.67
95 96 0.602905 CCGAACACCACAGAGGAACC 60.603 60.000 0.00 0.00 41.22 3.62
96 97 1.228657 GCCGAACACCACAGAGGAAC 61.229 60.000 0.00 0.00 41.22 3.62
97 98 1.070786 GCCGAACACCACAGAGGAA 59.929 57.895 0.00 0.00 41.22 3.36
98 99 0.541063 TAGCCGAACACCACAGAGGA 60.541 55.000 0.00 0.00 41.22 3.71
99 100 0.537188 ATAGCCGAACACCACAGAGG 59.463 55.000 0.00 0.00 45.67 3.69
100 101 3.384668 CATATAGCCGAACACCACAGAG 58.615 50.000 0.00 0.00 0.00 3.35
101 102 2.483013 GCATATAGCCGAACACCACAGA 60.483 50.000 0.00 0.00 37.23 3.41
102 103 1.867233 GCATATAGCCGAACACCACAG 59.133 52.381 0.00 0.00 37.23 3.66
103 104 1.948104 GCATATAGCCGAACACCACA 58.052 50.000 0.00 0.00 37.23 4.17
122 123 1.372251 CGGCATAGCGCTACTCCAG 60.372 63.158 26.70 18.72 41.91 3.86
123 124 1.672854 AACGGCATAGCGCTACTCCA 61.673 55.000 26.70 8.26 41.91 3.86
124 125 1.067582 AACGGCATAGCGCTACTCC 59.932 57.895 21.49 21.15 41.91 3.85
125 126 1.215655 CCAACGGCATAGCGCTACTC 61.216 60.000 21.49 13.98 41.91 2.59
126 127 1.227263 CCAACGGCATAGCGCTACT 60.227 57.895 21.49 6.41 41.91 2.57
127 128 2.244651 CCCAACGGCATAGCGCTAC 61.245 63.158 21.49 7.99 41.91 3.58
128 129 2.108157 CCCAACGGCATAGCGCTA 59.892 61.111 21.30 21.30 41.91 4.26
129 130 4.856801 CCCCAACGGCATAGCGCT 62.857 66.667 17.26 17.26 41.91 5.92
130 131 4.849310 TCCCCAACGGCATAGCGC 62.849 66.667 0.00 0.00 41.28 5.92
131 132 2.588877 CTCCCCAACGGCATAGCG 60.589 66.667 0.00 0.00 0.00 4.26
132 133 2.902343 GCTCCCCAACGGCATAGC 60.902 66.667 0.00 0.00 0.00 2.97
133 134 2.588877 CGCTCCCCAACGGCATAG 60.589 66.667 0.00 0.00 0.00 2.23
134 135 3.078196 TCGCTCCCCAACGGCATA 61.078 61.111 0.00 0.00 0.00 3.14
135 136 4.473520 CTCGCTCCCCAACGGCAT 62.474 66.667 0.00 0.00 0.00 4.40
140 141 4.021925 AGTGCCTCGCTCCCCAAC 62.022 66.667 0.00 0.00 0.00 3.77
141 142 4.020617 CAGTGCCTCGCTCCCCAA 62.021 66.667 0.00 0.00 0.00 4.12
163 164 2.507992 ATCAGACGCTGCTCGCAC 60.508 61.111 0.00 0.00 43.23 5.34
164 165 2.507769 CATCAGACGCTGCTCGCA 60.508 61.111 0.00 0.00 43.23 5.10
165 166 3.922893 GCATCAGACGCTGCTCGC 61.923 66.667 0.00 2.00 43.23 5.03
166 167 2.341807 TAGGCATCAGACGCTGCTCG 62.342 60.000 0.00 0.00 45.38 5.03
167 168 0.179100 TTAGGCATCAGACGCTGCTC 60.179 55.000 0.00 0.00 38.45 4.26
168 169 0.179089 CTTAGGCATCAGACGCTGCT 60.179 55.000 0.00 0.00 38.45 4.24
169 170 1.770085 GCTTAGGCATCAGACGCTGC 61.770 60.000 0.00 0.00 38.54 5.25
170 171 0.460811 TGCTTAGGCATCAGACGCTG 60.461 55.000 0.00 1.02 44.28 5.18
171 172 1.900351 TGCTTAGGCATCAGACGCT 59.100 52.632 0.00 0.00 44.28 5.07
172 173 4.521075 TGCTTAGGCATCAGACGC 57.479 55.556 0.00 0.00 44.28 5.19
181 182 1.853250 AAGACCCCCTGTGCTTAGGC 61.853 60.000 1.72 0.00 36.47 3.93
182 183 0.035056 CAAGACCCCCTGTGCTTAGG 60.035 60.000 0.37 0.37 37.59 2.69
183 184 0.678048 GCAAGACCCCCTGTGCTTAG 60.678 60.000 0.00 0.00 34.13 2.18
184 185 1.133809 AGCAAGACCCCCTGTGCTTA 61.134 55.000 0.00 0.00 44.79 3.09
185 186 2.116125 GCAAGACCCCCTGTGCTT 59.884 61.111 0.00 0.00 34.13 3.91
186 187 2.856000 AGCAAGACCCCCTGTGCT 60.856 61.111 0.00 0.00 42.40 4.40
187 188 2.674380 CAGCAAGACCCCCTGTGC 60.674 66.667 0.00 0.00 37.26 4.57
188 189 2.034687 CCAGCAAGACCCCCTGTG 59.965 66.667 0.00 0.00 0.00 3.66
189 190 2.450502 ACCAGCAAGACCCCCTGT 60.451 61.111 0.00 0.00 0.00 4.00
190 191 2.034687 CACCAGCAAGACCCCCTG 59.965 66.667 0.00 0.00 0.00 4.45
191 192 3.260100 CCACCAGCAAGACCCCCT 61.260 66.667 0.00 0.00 0.00 4.79
192 193 3.580319 ACCACCAGCAAGACCCCC 61.580 66.667 0.00 0.00 0.00 5.40
193 194 2.142292 ATCACCACCAGCAAGACCCC 62.142 60.000 0.00 0.00 0.00 4.95
194 195 0.962356 CATCACCACCAGCAAGACCC 60.962 60.000 0.00 0.00 0.00 4.46
195 196 0.962356 CCATCACCACCAGCAAGACC 60.962 60.000 0.00 0.00 0.00 3.85
196 197 0.036732 TCCATCACCACCAGCAAGAC 59.963 55.000 0.00 0.00 0.00 3.01
197 198 0.325933 CTCCATCACCACCAGCAAGA 59.674 55.000 0.00 0.00 0.00 3.02
198 199 1.310933 GCTCCATCACCACCAGCAAG 61.311 60.000 0.00 0.00 0.00 4.01
199 200 1.303561 GCTCCATCACCACCAGCAA 60.304 57.895 0.00 0.00 0.00 3.91
200 201 2.352422 GCTCCATCACCACCAGCA 59.648 61.111 0.00 0.00 0.00 4.41
201 202 2.821366 CGCTCCATCACCACCAGC 60.821 66.667 0.00 0.00 0.00 4.85
202 203 1.742880 CACGCTCCATCACCACCAG 60.743 63.158 0.00 0.00 0.00 4.00
203 204 2.347114 CACGCTCCATCACCACCA 59.653 61.111 0.00 0.00 0.00 4.17
204 205 2.436646 CCACGCTCCATCACCACC 60.437 66.667 0.00 0.00 0.00 4.61
205 206 2.238847 TAGCCACGCTCCATCACCAC 62.239 60.000 0.00 0.00 40.44 4.16
206 207 1.337384 ATAGCCACGCTCCATCACCA 61.337 55.000 0.00 0.00 40.44 4.17
207 208 0.679505 TATAGCCACGCTCCATCACC 59.320 55.000 0.00 0.00 40.44 4.02
208 209 2.751166 ATATAGCCACGCTCCATCAC 57.249 50.000 0.00 0.00 40.44 3.06
209 210 3.161866 TGTATATAGCCACGCTCCATCA 58.838 45.455 0.00 0.00 40.44 3.07
210 211 3.868757 TGTATATAGCCACGCTCCATC 57.131 47.619 0.00 0.00 40.44 3.51
211 212 4.709886 TGTATGTATATAGCCACGCTCCAT 59.290 41.667 0.00 0.00 40.44 3.41
212 213 4.083565 TGTATGTATATAGCCACGCTCCA 58.916 43.478 0.00 0.00 40.44 3.86
213 214 4.713824 TGTATGTATATAGCCACGCTCC 57.286 45.455 0.00 0.00 40.44 4.70
214 215 4.863131 GGTTGTATGTATATAGCCACGCTC 59.137 45.833 0.00 0.00 40.44 5.03
215 216 4.527038 AGGTTGTATGTATATAGCCACGCT 59.473 41.667 4.79 0.00 43.41 5.07
216 217 4.817517 AGGTTGTATGTATATAGCCACGC 58.182 43.478 4.79 0.00 29.30 5.34
217 218 7.152645 AGAAAGGTTGTATGTATATAGCCACG 58.847 38.462 4.79 0.00 29.30 4.94
218 219 7.328737 CGAGAAAGGTTGTATGTATATAGCCAC 59.671 40.741 4.79 0.00 29.30 5.01
219 220 7.375834 CGAGAAAGGTTGTATGTATATAGCCA 58.624 38.462 4.79 0.00 29.30 4.75
220 221 6.310711 GCGAGAAAGGTTGTATGTATATAGCC 59.689 42.308 0.00 0.00 0.00 3.93
221 222 7.091443 AGCGAGAAAGGTTGTATGTATATAGC 58.909 38.462 0.00 0.00 0.00 2.97
222 223 9.130312 GAAGCGAGAAAGGTTGTATGTATATAG 57.870 37.037 0.00 0.00 31.35 1.31
223 224 8.086522 GGAAGCGAGAAAGGTTGTATGTATATA 58.913 37.037 0.00 0.00 31.35 0.86
224 225 6.929606 GGAAGCGAGAAAGGTTGTATGTATAT 59.070 38.462 0.00 0.00 31.35 0.86
225 226 6.097839 AGGAAGCGAGAAAGGTTGTATGTATA 59.902 38.462 0.00 0.00 31.35 1.47
226 227 5.104900 AGGAAGCGAGAAAGGTTGTATGTAT 60.105 40.000 0.00 0.00 31.35 2.29
227 228 4.222145 AGGAAGCGAGAAAGGTTGTATGTA 59.778 41.667 0.00 0.00 31.35 2.29
228 229 3.008049 AGGAAGCGAGAAAGGTTGTATGT 59.992 43.478 0.00 0.00 31.35 2.29
229 230 3.600388 AGGAAGCGAGAAAGGTTGTATG 58.400 45.455 0.00 0.00 31.35 2.39
230 231 3.260884 TGAGGAAGCGAGAAAGGTTGTAT 59.739 43.478 0.00 0.00 31.35 2.29
231 232 2.631062 TGAGGAAGCGAGAAAGGTTGTA 59.369 45.455 0.00 0.00 31.35 2.41
232 233 1.416401 TGAGGAAGCGAGAAAGGTTGT 59.584 47.619 0.00 0.00 31.35 3.32
233 234 2.169832 TGAGGAAGCGAGAAAGGTTG 57.830 50.000 0.00 0.00 31.35 3.77
234 235 3.425162 AATGAGGAAGCGAGAAAGGTT 57.575 42.857 0.00 0.00 34.19 3.50
235 236 3.425162 AAATGAGGAAGCGAGAAAGGT 57.575 42.857 0.00 0.00 0.00 3.50
236 237 5.355350 ACAATAAATGAGGAAGCGAGAAAGG 59.645 40.000 0.00 0.00 0.00 3.11
237 238 6.428385 ACAATAAATGAGGAAGCGAGAAAG 57.572 37.500 0.00 0.00 0.00 2.62
238 239 9.607988 TTATACAATAAATGAGGAAGCGAGAAA 57.392 29.630 0.00 0.00 0.00 2.52
239 240 9.042008 GTTATACAATAAATGAGGAAGCGAGAA 57.958 33.333 0.00 0.00 0.00 2.87
240 241 8.201464 TGTTATACAATAAATGAGGAAGCGAGA 58.799 33.333 0.00 0.00 0.00 4.04
241 242 8.276325 GTGTTATACAATAAATGAGGAAGCGAG 58.724 37.037 0.00 0.00 0.00 5.03
242 243 7.766738 TGTGTTATACAATAAATGAGGAAGCGA 59.233 33.333 0.00 0.00 36.06 4.93
243 244 7.915508 TGTGTTATACAATAAATGAGGAAGCG 58.084 34.615 0.00 0.00 36.06 4.68
244 245 9.884465 GATGTGTTATACAATAAATGAGGAAGC 57.116 33.333 0.00 0.00 43.77 3.86
277 278 9.606631 TGTTAGAAAACTTTGGCACATAAATTT 57.393 25.926 0.00 0.00 35.55 1.82
278 279 9.606631 TTGTTAGAAAACTTTGGCACATAAATT 57.393 25.926 0.00 0.00 35.55 1.82
279 280 9.040939 GTTGTTAGAAAACTTTGGCACATAAAT 57.959 29.630 0.00 0.00 35.55 1.40
280 281 8.254508 AGTTGTTAGAAAACTTTGGCACATAAA 58.745 29.630 0.00 0.00 34.16 1.40
281 282 7.777095 AGTTGTTAGAAAACTTTGGCACATAA 58.223 30.769 0.00 0.00 34.16 1.90
282 283 7.341445 AGTTGTTAGAAAACTTTGGCACATA 57.659 32.000 0.00 0.00 34.16 2.29
283 284 6.220726 AGTTGTTAGAAAACTTTGGCACAT 57.779 33.333 0.00 0.00 34.16 3.21
284 285 5.652994 AGTTGTTAGAAAACTTTGGCACA 57.347 34.783 0.00 0.00 34.16 4.57
285 286 7.649057 AGATAGTTGTTAGAAAACTTTGGCAC 58.351 34.615 0.00 0.00 38.73 5.01
286 287 7.817418 AGATAGTTGTTAGAAAACTTTGGCA 57.183 32.000 0.00 0.00 38.73 4.92
287 288 9.608617 GTAAGATAGTTGTTAGAAAACTTTGGC 57.391 33.333 0.00 0.00 38.73 4.52
292 293 9.841295 TGGTTGTAAGATAGTTGTTAGAAAACT 57.159 29.630 0.00 0.00 40.82 2.66
332 333 9.890629 ACAGACAATTATTGCATAACTTCTCTA 57.109 29.630 4.68 0.00 0.00 2.43
333 334 8.798859 ACAGACAATTATTGCATAACTTCTCT 57.201 30.769 4.68 0.00 0.00 3.10
334 335 8.668353 TGACAGACAATTATTGCATAACTTCTC 58.332 33.333 4.68 0.00 0.00 2.87
335 336 8.565896 TGACAGACAATTATTGCATAACTTCT 57.434 30.769 4.68 0.00 0.00 2.85
336 337 9.229784 CATGACAGACAATTATTGCATAACTTC 57.770 33.333 4.68 0.00 0.00 3.01
337 338 8.959548 TCATGACAGACAATTATTGCATAACTT 58.040 29.630 4.68 0.00 0.00 2.66
338 339 8.510243 TCATGACAGACAATTATTGCATAACT 57.490 30.769 4.68 0.00 0.00 2.24
339 340 9.229784 CTTCATGACAGACAATTATTGCATAAC 57.770 33.333 4.68 0.00 0.00 1.89
340 341 8.959548 ACTTCATGACAGACAATTATTGCATAA 58.040 29.630 4.68 0.00 0.00 1.90
341 342 8.510243 ACTTCATGACAGACAATTATTGCATA 57.490 30.769 4.68 0.00 0.00 3.14
342 343 7.338703 AGACTTCATGACAGACAATTATTGCAT 59.661 33.333 4.68 0.00 0.00 3.96
343 344 6.656270 AGACTTCATGACAGACAATTATTGCA 59.344 34.615 4.68 0.00 0.00 4.08
344 345 7.081526 AGACTTCATGACAGACAATTATTGC 57.918 36.000 4.68 0.00 0.00 3.56
345 346 9.338291 CAAAGACTTCATGACAGACAATTATTG 57.662 33.333 3.07 3.07 0.00 1.90
346 347 8.025445 GCAAAGACTTCATGACAGACAATTATT 58.975 33.333 0.00 0.00 0.00 1.40
347 348 7.175467 TGCAAAGACTTCATGACAGACAATTAT 59.825 33.333 0.00 0.00 0.00 1.28
348 349 6.486320 TGCAAAGACTTCATGACAGACAATTA 59.514 34.615 0.00 0.00 0.00 1.40
349 350 5.300034 TGCAAAGACTTCATGACAGACAATT 59.700 36.000 0.00 0.00 0.00 2.32
350 351 4.823442 TGCAAAGACTTCATGACAGACAAT 59.177 37.500 0.00 0.00 0.00 2.71
351 352 4.198530 TGCAAAGACTTCATGACAGACAA 58.801 39.130 0.00 0.00 0.00 3.18
352 353 3.807553 TGCAAAGACTTCATGACAGACA 58.192 40.909 0.00 0.00 0.00 3.41
353 354 4.694509 AGATGCAAAGACTTCATGACAGAC 59.305 41.667 0.00 0.00 0.00 3.51
354 355 4.903054 AGATGCAAAGACTTCATGACAGA 58.097 39.130 0.00 0.00 0.00 3.41
355 356 4.094590 GGAGATGCAAAGACTTCATGACAG 59.905 45.833 0.00 0.00 0.00 3.51
356 357 4.005650 GGAGATGCAAAGACTTCATGACA 58.994 43.478 0.00 0.00 0.00 3.58
357 358 4.005650 TGGAGATGCAAAGACTTCATGAC 58.994 43.478 0.00 0.00 0.00 3.06
358 359 4.290711 TGGAGATGCAAAGACTTCATGA 57.709 40.909 0.00 0.00 0.00 3.07
359 360 5.578005 AATGGAGATGCAAAGACTTCATG 57.422 39.130 0.00 0.00 31.27 3.07
360 361 6.421485 ACTAATGGAGATGCAAAGACTTCAT 58.579 36.000 0.00 0.00 32.04 2.57
361 362 5.809001 ACTAATGGAGATGCAAAGACTTCA 58.191 37.500 0.00 0.00 0.00 3.02
362 363 6.372659 TCAACTAATGGAGATGCAAAGACTTC 59.627 38.462 0.00 0.00 0.00 3.01
363 364 6.240894 TCAACTAATGGAGATGCAAAGACTT 58.759 36.000 0.00 0.00 0.00 3.01
364 365 5.809001 TCAACTAATGGAGATGCAAAGACT 58.191 37.500 0.00 0.00 0.00 3.24
365 366 5.877012 TCTCAACTAATGGAGATGCAAAGAC 59.123 40.000 0.00 0.00 35.34 3.01
366 367 6.053632 TCTCAACTAATGGAGATGCAAAGA 57.946 37.500 0.00 0.00 35.34 2.52
367 368 6.111382 TCTCTCAACTAATGGAGATGCAAAG 58.889 40.000 0.00 0.00 39.29 2.77
368 369 6.053632 TCTCTCAACTAATGGAGATGCAAA 57.946 37.500 0.00 0.00 39.29 3.68
369 370 5.423290 TCTCTCTCAACTAATGGAGATGCAA 59.577 40.000 0.00 0.00 39.29 4.08
370 371 4.958581 TCTCTCTCAACTAATGGAGATGCA 59.041 41.667 0.00 0.00 39.29 3.96
371 372 5.528043 TCTCTCTCAACTAATGGAGATGC 57.472 43.478 0.00 0.00 39.29 3.91
373 374 6.142498 ACCATCTCTCTCAACTAATGGAGAT 58.858 40.000 6.21 0.00 39.29 2.75
374 375 5.523588 ACCATCTCTCTCAACTAATGGAGA 58.476 41.667 6.21 0.00 37.64 3.71
375 376 5.867903 ACCATCTCTCTCAACTAATGGAG 57.132 43.478 6.21 0.00 37.64 3.86
376 377 6.436027 AGTACCATCTCTCTCAACTAATGGA 58.564 40.000 6.21 0.00 37.64 3.41
377 378 6.723298 AGTACCATCTCTCTCAACTAATGG 57.277 41.667 0.00 0.00 39.62 3.16
378 379 8.458573 AGTAGTACCATCTCTCTCAACTAATG 57.541 38.462 0.00 0.00 0.00 1.90
382 383 8.940982 AGTATAGTAGTACCATCTCTCTCAACT 58.059 37.037 0.00 0.00 0.00 3.16
383 384 9.211485 GAGTATAGTAGTACCATCTCTCTCAAC 57.789 40.741 0.00 0.00 0.00 3.18
384 385 8.377034 GGAGTATAGTAGTACCATCTCTCTCAA 58.623 40.741 0.00 0.00 0.00 3.02
385 386 7.038160 GGGAGTATAGTAGTACCATCTCTCTCA 60.038 44.444 0.00 0.00 31.94 3.27
386 387 7.181485 AGGGAGTATAGTAGTACCATCTCTCTC 59.819 44.444 0.00 1.92 34.28 3.20
387 388 7.026874 AGGGAGTATAGTAGTACCATCTCTCT 58.973 42.308 0.00 3.30 34.28 3.10
388 389 7.181485 AGAGGGAGTATAGTAGTACCATCTCTC 59.819 44.444 0.00 3.63 34.25 3.20
389 390 7.026874 AGAGGGAGTATAGTAGTACCATCTCT 58.973 42.308 0.00 0.00 34.25 3.10
390 391 7.107542 CAGAGGGAGTATAGTAGTACCATCTC 58.892 46.154 0.00 1.02 36.62 2.75
391 392 6.563379 ACAGAGGGAGTATAGTAGTACCATCT 59.437 42.308 0.00 0.00 38.72 2.90
392 393 6.781943 ACAGAGGGAGTATAGTAGTACCATC 58.218 44.000 0.00 0.00 34.28 3.51
393 394 6.783517 ACAGAGGGAGTATAGTAGTACCAT 57.216 41.667 0.00 0.00 34.28 3.55
394 395 6.587560 AACAGAGGGAGTATAGTAGTACCA 57.412 41.667 0.00 0.00 34.28 3.25
398 399 9.796180 CACTATAAACAGAGGGAGTATAGTAGT 57.204 37.037 0.00 0.00 36.37 2.73
399 400 8.732531 GCACTATAAACAGAGGGAGTATAGTAG 58.267 40.741 0.00 0.00 36.37 2.57
400 401 7.389884 CGCACTATAAACAGAGGGAGTATAGTA 59.610 40.741 0.00 0.00 36.37 1.82
401 402 6.207025 CGCACTATAAACAGAGGGAGTATAGT 59.793 42.308 0.00 0.00 38.10 2.12
402 403 6.613233 CGCACTATAAACAGAGGGAGTATAG 58.387 44.000 0.00 0.00 33.07 1.31
403 404 5.048224 GCGCACTATAAACAGAGGGAGTATA 60.048 44.000 0.30 0.00 0.00 1.47
404 405 4.262079 GCGCACTATAAACAGAGGGAGTAT 60.262 45.833 0.30 0.00 0.00 2.12
405 406 3.067742 GCGCACTATAAACAGAGGGAGTA 59.932 47.826 0.30 0.00 0.00 2.59
406 407 2.159085 GCGCACTATAAACAGAGGGAGT 60.159 50.000 0.30 0.00 0.00 3.85
407 408 2.159099 TGCGCACTATAAACAGAGGGAG 60.159 50.000 5.66 0.00 0.00 4.30
408 409 1.828595 TGCGCACTATAAACAGAGGGA 59.171 47.619 5.66 0.00 0.00 4.20
409 410 2.309528 TGCGCACTATAAACAGAGGG 57.690 50.000 5.66 0.00 0.00 4.30
410 411 3.002656 CCAATGCGCACTATAAACAGAGG 59.997 47.826 14.90 0.00 0.00 3.69
411 412 3.546815 GCCAATGCGCACTATAAACAGAG 60.547 47.826 14.90 0.00 0.00 3.35
412 413 2.354510 GCCAATGCGCACTATAAACAGA 59.645 45.455 14.90 0.00 0.00 3.41
413 414 2.097304 TGCCAATGCGCACTATAAACAG 59.903 45.455 14.90 0.00 41.78 3.16
414 415 2.087646 TGCCAATGCGCACTATAAACA 58.912 42.857 14.90 1.67 41.78 2.83
415 416 2.541588 CCTGCCAATGCGCACTATAAAC 60.542 50.000 14.90 0.00 41.78 2.01
416 417 1.675483 CCTGCCAATGCGCACTATAAA 59.325 47.619 14.90 0.00 41.78 1.40
417 418 1.308047 CCTGCCAATGCGCACTATAA 58.692 50.000 14.90 0.00 41.78 0.98
418 419 0.534877 CCCTGCCAATGCGCACTATA 60.535 55.000 14.90 0.00 41.78 1.31
419 420 1.825191 CCCTGCCAATGCGCACTAT 60.825 57.895 14.90 0.00 41.78 2.12
420 421 2.438254 CCCTGCCAATGCGCACTA 60.438 61.111 14.90 0.00 41.78 2.74
424 425 3.594460 AAAAGCCCTGCCAATGCGC 62.594 57.895 0.00 0.00 41.78 6.09
425 426 1.738830 CAAAAGCCCTGCCAATGCG 60.739 57.895 0.00 0.00 41.78 4.73
426 427 1.376295 CCAAAAGCCCTGCCAATGC 60.376 57.895 0.00 0.00 38.26 3.56
427 428 0.320946 CACCAAAAGCCCTGCCAATG 60.321 55.000 0.00 0.00 0.00 2.82
428 429 1.482748 CCACCAAAAGCCCTGCCAAT 61.483 55.000 0.00 0.00 0.00 3.16
429 430 2.139484 CCACCAAAAGCCCTGCCAA 61.139 57.895 0.00 0.00 0.00 4.52
430 431 2.523902 CCACCAAAAGCCCTGCCA 60.524 61.111 0.00 0.00 0.00 4.92
431 432 4.007644 GCCACCAAAAGCCCTGCC 62.008 66.667 0.00 0.00 0.00 4.85
432 433 4.007644 GGCCACCAAAAGCCCTGC 62.008 66.667 0.00 0.00 43.76 4.85
798 2015 4.077184 GACATGTCGCCGGTGGGA 62.077 66.667 16.49 1.80 34.06 4.37
810 2027 1.514228 CAGTCCGTCCGTCGACATG 60.514 63.158 17.16 6.03 42.86 3.21
935 2159 0.461961 GATGTTAGCTCCACCGCTCT 59.538 55.000 0.00 0.00 41.30 4.09
964 2188 0.818040 ACCGGGAACACAGCACTTTC 60.818 55.000 6.32 0.00 0.00 2.62
991 2216 3.432749 GCTGGAGCACTCATGGAATCTTA 60.433 47.826 0.00 0.00 41.59 2.10
1402 2926 2.012673 CCAACAGAGCATGCTAGGAAC 58.987 52.381 22.74 7.82 0.00 3.62
1444 2968 2.020694 GCAGCCTGCTACATCCACAAT 61.021 52.381 10.04 0.00 40.96 2.71
1485 3011 1.356624 GCACGCCCATGATTAGCAC 59.643 57.895 0.00 0.00 0.00 4.40
1999 4015 0.800012 GTATGCGCCGGAAAACTTCA 59.200 50.000 5.05 0.00 0.00 3.02
2098 4118 2.670934 CACCCTGAGCCAGTGTGC 60.671 66.667 5.24 0.00 33.70 4.57
2290 4310 2.718563 CCGTATACCAAGCCCAGTTTT 58.281 47.619 0.00 0.00 0.00 2.43
2299 4319 0.179094 TTCGCCAGCCGTATACCAAG 60.179 55.000 0.00 0.00 38.35 3.61
2335 4355 6.336566 TCTCTTGCATACATCTTGTTCTCTC 58.663 40.000 0.00 0.00 0.00 3.20
2516 4539 8.073467 TCACAATTTACCAGGAAGAAACTTTT 57.927 30.769 0.00 0.00 0.00 2.27
2546 4569 7.487189 GCAGATTTCAGTCCAAAACTATTGATG 59.513 37.037 0.00 0.00 36.07 3.07
2751 5934 8.175069 ACATGTGCTGATTTTTACTAATACACG 58.825 33.333 0.00 0.00 0.00 4.49
3409 11167 3.131400 AGCAAGGTAGTTTTCCGCAAAAA 59.869 39.130 0.00 0.00 33.17 1.94
3410 11168 2.691011 AGCAAGGTAGTTTTCCGCAAAA 59.309 40.909 0.00 0.00 0.00 2.44
3411 11169 2.303175 AGCAAGGTAGTTTTCCGCAAA 58.697 42.857 0.00 0.00 0.00 3.68
3412 11170 1.975660 AGCAAGGTAGTTTTCCGCAA 58.024 45.000 0.00 0.00 0.00 4.85
3413 11171 2.843401 TAGCAAGGTAGTTTTCCGCA 57.157 45.000 0.00 0.00 0.00 5.69
3414 11172 3.267483 TGATAGCAAGGTAGTTTTCCGC 58.733 45.455 0.00 0.00 0.00 5.54
3415 11173 6.537301 TGTAATGATAGCAAGGTAGTTTTCCG 59.463 38.462 0.00 0.00 0.00 4.30
3416 11174 7.859325 TGTAATGATAGCAAGGTAGTTTTCC 57.141 36.000 0.00 0.00 0.00 3.13
3418 11176 9.899661 TGTATGTAATGATAGCAAGGTAGTTTT 57.100 29.630 0.00 0.00 0.00 2.43
3419 11177 9.326413 GTGTATGTAATGATAGCAAGGTAGTTT 57.674 33.333 0.00 0.00 0.00 2.66
3420 11178 8.705594 AGTGTATGTAATGATAGCAAGGTAGTT 58.294 33.333 0.00 0.00 0.00 2.24
3421 11179 8.251383 AGTGTATGTAATGATAGCAAGGTAGT 57.749 34.615 0.00 0.00 0.00 2.73
3422 11180 8.580720 AGAGTGTATGTAATGATAGCAAGGTAG 58.419 37.037 0.00 0.00 0.00 3.18
3423 11181 8.360390 CAGAGTGTATGTAATGATAGCAAGGTA 58.640 37.037 0.00 0.00 0.00 3.08
3424 11182 7.069950 TCAGAGTGTATGTAATGATAGCAAGGT 59.930 37.037 0.00 0.00 0.00 3.50
3425 11183 7.436933 TCAGAGTGTATGTAATGATAGCAAGG 58.563 38.462 0.00 0.00 0.00 3.61
3426 11184 8.923683 CATCAGAGTGTATGTAATGATAGCAAG 58.076 37.037 0.00 0.00 0.00 4.01
3427 11185 8.424133 ACATCAGAGTGTATGTAATGATAGCAA 58.576 33.333 0.00 0.00 34.61 3.91
3428 11186 7.869429 CACATCAGAGTGTATGTAATGATAGCA 59.131 37.037 0.00 0.00 34.61 3.49
3429 11187 8.237282 CACATCAGAGTGTATGTAATGATAGC 57.763 38.462 0.00 0.00 34.61 2.97
3490 11248 5.517322 AATTAACCGCTCTCTCGATTACT 57.483 39.130 0.00 0.00 0.00 2.24
3498 11256 4.947388 TGGCAAATAAATTAACCGCTCTCT 59.053 37.500 0.00 0.00 0.00 3.10
3665 11458 4.142227 ACGTAGATGAACCATGACCTGTAC 60.142 45.833 0.00 0.00 0.00 2.90
3691 11484 6.017440 TGTTAGTCTACCACAAGTTTGAATGC 60.017 38.462 0.00 0.00 0.00 3.56
3703 11496 5.972107 TCCTACACTTGTTAGTCTACCAC 57.028 43.478 0.00 0.00 30.26 4.16
3716 11509 7.926555 CCGTTATCTATTTGACATCCTACACTT 59.073 37.037 0.00 0.00 0.00 3.16
3826 11701 3.127721 GGCCAGCTGACTGTTAAGATTTC 59.872 47.826 17.39 0.00 42.81 2.17
3871 11746 1.891919 GCTGGCCACAAGTTCGACA 60.892 57.895 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.