Multiple sequence alignment - TraesCS3B01G578600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G578600 chr3B 100.000 3074 0 0 1 3074 807974919 807977992 0.000000e+00 5677.0
1 TraesCS3B01G578600 chr3B 91.484 1092 82 8 1087 2176 808043606 808042524 0.000000e+00 1491.0
2 TraesCS3B01G578600 chr3B 98.077 104 2 0 1 104 17350470 17350573 6.770000e-42 182.0
3 TraesCS3B01G578600 chr3B 93.913 115 7 0 1 115 94663667 94663781 1.130000e-39 174.0
4 TraesCS3B01G578600 chr3B 88.889 81 7 1 506 586 808069187 808069109 7.010000e-17 99.0
5 TraesCS3B01G578600 chr3B 95.556 45 2 0 102 146 808069338 808069294 4.250000e-09 73.1
6 TraesCS3B01G578600 chr3A 91.608 1978 86 28 438 2380 730117589 730115657 0.000000e+00 2660.0
7 TraesCS3B01G578600 chr3A 87.608 1501 115 42 709 2176 730657108 730655646 0.000000e+00 1676.0
8 TraesCS3B01G578600 chr3A 87.955 714 58 14 2375 3072 730112567 730111866 0.000000e+00 817.0
9 TraesCS3B01G578600 chr3A 83.019 212 32 2 2866 3074 730111704 730111494 4.050000e-44 189.0
10 TraesCS3B01G578600 chr3A 95.238 63 2 1 645 707 730117958 730117897 7.010000e-17 99.0
11 TraesCS3B01G578600 chr3A 100.000 29 0 0 2901 2929 634423290 634423318 2.000000e-03 54.7
12 TraesCS3B01G578600 chr3D 92.639 1671 70 24 542 2195 600631841 600633475 0.000000e+00 2355.0
13 TraesCS3B01G578600 chr3D 87.374 1489 98 45 700 2176 600821073 600819663 0.000000e+00 1626.0
14 TraesCS3B01G578600 chr3D 97.115 104 3 0 1 104 536025689 536025586 3.150000e-40 176.0
15 TraesCS3B01G578600 chr3D 80.978 184 30 4 2892 3074 342698156 342697977 1.150000e-29 141.0
16 TraesCS3B01G578600 chr3D 89.130 46 5 0 2884 2929 494706936 494706981 1.190000e-04 58.4
17 TraesCS3B01G578600 chr3D 100.000 28 0 0 2882 2909 89258602 89258629 6.000000e-03 52.8
18 TraesCS3B01G578600 chrUn 73.434 926 196 42 1093 1993 90726853 90725953 4.980000e-78 302.0
19 TraesCS3B01G578600 chrUn 73.434 926 196 42 1093 1993 90939398 90938498 4.980000e-78 302.0
20 TraesCS3B01G578600 chrUn 78.272 405 72 12 1093 1489 401026723 401026327 2.370000e-61 246.0
21 TraesCS3B01G578600 chr7D 73.061 954 214 37 1109 2041 37234993 37234062 6.440000e-77 298.0
22 TraesCS3B01G578600 chr7D 82.759 203 20 8 2884 3074 623700141 623699942 1.900000e-37 167.0
23 TraesCS3B01G578600 chr7A 97.143 105 3 0 1 105 31581013 31580909 8.760000e-41 178.0
24 TraesCS3B01G578600 chr2B 98.039 102 2 0 1 102 111009310 111009411 8.760000e-41 178.0
25 TraesCS3B01G578600 chr2B 97.143 105 3 0 1 105 768807694 768807590 8.760000e-41 178.0
26 TraesCS3B01G578600 chr2B 79.897 194 29 6 2889 3074 427888044 427887853 1.920000e-27 134.0
27 TraesCS3B01G578600 chr2B 80.986 142 19 5 2928 3068 13748913 13748779 4.190000e-19 106.0
28 TraesCS3B01G578600 chr2B 73.810 294 54 17 1217 1503 793506022 793505745 9.070000e-16 95.3
29 TraesCS3B01G578600 chr2B 84.483 58 9 0 1597 1654 793129230 793129173 1.190000e-04 58.4
30 TraesCS3B01G578600 chr4A 94.737 114 4 2 1 114 721419326 721419437 3.150000e-40 176.0
31 TraesCS3B01G578600 chr4A 82.673 202 19 10 2884 3073 886823 886626 6.820000e-37 165.0
32 TraesCS3B01G578600 chr1A 97.115 104 3 0 1 104 41902361 41902258 3.150000e-40 176.0
33 TraesCS3B01G578600 chr1B 91.736 121 7 3 1 119 638037210 638037091 6.820000e-37 165.0
34 TraesCS3B01G578600 chr1B 82.313 147 23 2 2889 3035 112338659 112338516 1.160000e-24 124.0
35 TraesCS3B01G578600 chr5B 78.199 211 32 9 2875 3073 696951865 696952073 4.160000e-24 122.0
36 TraesCS3B01G578600 chr2D 73.810 294 54 17 1217 1503 643435343 643435620 9.070000e-16 95.3
37 TraesCS3B01G578600 chr2D 83.784 74 10 2 1386 1458 643330660 643330732 5.500000e-08 69.4
38 TraesCS3B01G578600 chr2D 84.211 57 9 0 1598 1654 643924339 643924395 4.280000e-04 56.5
39 TraesCS3B01G578600 chr2A 73.469 294 55 17 1217 1503 768266844 768266567 4.220000e-14 89.8
40 TraesCS3B01G578600 chr6B 93.182 44 3 0 1602 1645 599122378 599122335 7.110000e-07 65.8
41 TraesCS3B01G578600 chr6D 90.909 44 4 0 1602 1645 400089324 400089281 3.310000e-05 60.2
42 TraesCS3B01G578600 chr5A 100.000 29 0 0 458 486 570251595 570251567 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G578600 chr3B 807974919 807977992 3073 False 5677.00 5677 100.000 1 3074 1 chr3B.!!$F3 3073
1 TraesCS3B01G578600 chr3B 808042524 808043606 1082 True 1491.00 1491 91.484 1087 2176 1 chr3B.!!$R1 1089
2 TraesCS3B01G578600 chr3A 730655646 730657108 1462 True 1676.00 1676 87.608 709 2176 1 chr3A.!!$R1 1467
3 TraesCS3B01G578600 chr3A 730111494 730117958 6464 True 941.25 2660 89.455 438 3074 4 chr3A.!!$R2 2636
4 TraesCS3B01G578600 chr3D 600631841 600633475 1634 False 2355.00 2355 92.639 542 2195 1 chr3D.!!$F3 1653
5 TraesCS3B01G578600 chr3D 600819663 600821073 1410 True 1626.00 1626 87.374 700 2176 1 chr3D.!!$R3 1476
6 TraesCS3B01G578600 chrUn 90725953 90726853 900 True 302.00 302 73.434 1093 1993 1 chrUn.!!$R1 900
7 TraesCS3B01G578600 chrUn 90938498 90939398 900 True 302.00 302 73.434 1093 1993 1 chrUn.!!$R2 900
8 TraesCS3B01G578600 chr7D 37234062 37234993 931 True 298.00 298 73.061 1109 2041 1 chr7D.!!$R1 932

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
657 661 0.034767 ATATGCTGCTGCCACAGTGT 60.035 50.0 13.47 0.0 39.96 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2608 5762 1.261619 CTGCCGAACAAGAGTCACAAC 59.738 52.381 0.0 0.0 0.0 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.586155 TTATAAGTCCCAGGAACCAAACA 57.414 39.130 0.00 0.00 0.00 2.83
25 26 0.539669 GTCCCAGGAACCAAACAGGG 60.540 60.000 0.00 0.00 43.89 4.45
26 27 0.699577 TCCCAGGAACCAAACAGGGA 60.700 55.000 0.00 0.00 43.89 4.20
27 28 0.251341 CCCAGGAACCAAACAGGGAG 60.251 60.000 0.00 0.00 43.89 4.30
29 30 1.271597 CCAGGAACCAAACAGGGAGAG 60.272 57.143 0.00 0.00 43.89 3.20
30 31 1.699634 CAGGAACCAAACAGGGAGAGA 59.300 52.381 0.00 0.00 43.89 3.10
32 33 1.700186 GGAACCAAACAGGGAGAGACT 59.300 52.381 0.00 0.00 43.89 3.24
33 34 2.106684 GGAACCAAACAGGGAGAGACTT 59.893 50.000 0.00 0.00 43.89 3.01
34 35 3.435169 GGAACCAAACAGGGAGAGACTTT 60.435 47.826 0.00 0.00 43.89 2.66
35 36 3.953542 ACCAAACAGGGAGAGACTTTT 57.046 42.857 0.00 0.00 43.89 2.27
37 38 5.382664 ACCAAACAGGGAGAGACTTTTTA 57.617 39.130 0.00 0.00 43.89 1.52
38 39 5.377478 ACCAAACAGGGAGAGACTTTTTAG 58.623 41.667 0.00 0.00 43.89 1.85
40 41 4.642466 AACAGGGAGAGACTTTTTAGGG 57.358 45.455 0.00 0.00 0.00 3.53
41 42 3.870559 ACAGGGAGAGACTTTTTAGGGA 58.129 45.455 0.00 0.00 0.00 4.20
42 43 3.583526 ACAGGGAGAGACTTTTTAGGGAC 59.416 47.826 0.00 0.00 0.00 4.46
43 44 3.841255 CAGGGAGAGACTTTTTAGGGACT 59.159 47.826 0.00 0.00 46.37 3.85
44 45 4.287326 CAGGGAGAGACTTTTTAGGGACTT 59.713 45.833 0.00 0.00 41.75 3.01
45 46 4.287326 AGGGAGAGACTTTTTAGGGACTTG 59.713 45.833 0.00 0.00 41.75 3.16
47 48 4.998033 GGAGAGACTTTTTAGGGACTTGTG 59.002 45.833 0.00 0.00 41.75 3.33
48 49 5.221661 GGAGAGACTTTTTAGGGACTTGTGA 60.222 44.000 0.00 0.00 41.75 3.58
49 50 5.612351 AGAGACTTTTTAGGGACTTGTGAC 58.388 41.667 0.00 0.00 41.75 3.67
50 51 5.367060 AGAGACTTTTTAGGGACTTGTGACT 59.633 40.000 0.00 0.00 41.75 3.41
51 52 6.002653 AGACTTTTTAGGGACTTGTGACTT 57.997 37.500 0.00 0.00 41.75 3.01
52 53 7.070821 AGAGACTTTTTAGGGACTTGTGACTTA 59.929 37.037 0.00 0.00 41.75 2.24
54 55 8.877195 AGACTTTTTAGGGACTTGTGACTTATA 58.123 33.333 0.00 0.00 41.75 0.98
55 56 9.498176 GACTTTTTAGGGACTTGTGACTTATAA 57.502 33.333 0.00 0.00 41.75 0.98
56 57 9.503399 ACTTTTTAGGGACTTGTGACTTATAAG 57.497 33.333 11.05 11.05 41.75 1.73
57 58 9.503399 CTTTTTAGGGACTTGTGACTTATAAGT 57.497 33.333 18.05 18.05 42.57 2.24
58 59 9.856162 TTTTTAGGGACTTGTGACTTATAAGTT 57.144 29.630 18.96 2.29 40.34 2.66
61 62 4.941873 GGGACTTGTGACTTATAAGTTGGG 59.058 45.833 18.96 10.37 40.34 4.12
62 63 5.280317 GGGACTTGTGACTTATAAGTTGGGA 60.280 44.000 18.96 6.15 40.34 4.37
63 64 5.642491 GGACTTGTGACTTATAAGTTGGGAC 59.358 44.000 18.96 13.23 40.34 4.46
64 65 6.435292 ACTTGTGACTTATAAGTTGGGACT 57.565 37.500 18.96 0.00 37.44 3.85
65 66 7.310237 GGACTTGTGACTTATAAGTTGGGACTA 60.310 40.741 18.96 9.68 40.34 2.59
68 69 9.280174 CTTGTGACTTATAAGTTGGGACTAAAA 57.720 33.333 18.96 4.98 39.88 1.52
69 70 9.629878 TTGTGACTTATAAGTTGGGACTAAAAA 57.370 29.630 18.96 3.18 39.88 1.94
95 96 5.801380 GTCCTAGGACTTATGAACCAAACA 58.199 41.667 31.12 0.00 41.57 2.83
96 97 5.875359 GTCCTAGGACTTATGAACCAAACAG 59.125 44.000 31.12 0.00 41.57 3.16
97 98 5.045869 TCCTAGGACTTATGAACCAAACAGG 60.046 44.000 7.62 0.00 45.67 4.00
98 99 4.034285 AGGACTTATGAACCAAACAGGG 57.966 45.455 0.00 0.00 43.89 4.45
99 100 2.492088 GGACTTATGAACCAAACAGGGC 59.508 50.000 0.00 0.00 43.89 5.19
100 101 2.492088 GACTTATGAACCAAACAGGGCC 59.508 50.000 0.00 0.00 43.89 5.80
102 103 3.332485 ACTTATGAACCAAACAGGGCCTA 59.668 43.478 5.28 0.00 43.89 3.93
103 104 2.990740 ATGAACCAAACAGGGCCTAA 57.009 45.000 5.28 0.00 43.89 2.69
104 105 2.757894 TGAACCAAACAGGGCCTAAA 57.242 45.000 5.28 0.00 43.89 1.85
105 106 3.033659 TGAACCAAACAGGGCCTAAAA 57.966 42.857 5.28 0.00 43.89 1.52
106 107 3.582164 TGAACCAAACAGGGCCTAAAAT 58.418 40.909 5.28 0.00 43.89 1.82
107 108 4.742012 TGAACCAAACAGGGCCTAAAATA 58.258 39.130 5.28 0.00 43.89 1.40
108 109 5.337788 TGAACCAAACAGGGCCTAAAATAT 58.662 37.500 5.28 0.00 43.89 1.28
109 110 6.494952 TGAACCAAACAGGGCCTAAAATATA 58.505 36.000 5.28 0.00 43.89 0.86
110 111 6.605594 TGAACCAAACAGGGCCTAAAATATAG 59.394 38.462 5.28 0.00 43.89 1.31
111 112 6.335781 ACCAAACAGGGCCTAAAATATAGA 57.664 37.500 5.28 0.00 43.89 1.98
112 113 6.365520 ACCAAACAGGGCCTAAAATATAGAG 58.634 40.000 5.28 0.00 43.89 2.43
113 114 6.159751 ACCAAACAGGGCCTAAAATATAGAGA 59.840 38.462 5.28 0.00 43.89 3.10
114 115 7.060421 CCAAACAGGGCCTAAAATATAGAGAA 58.940 38.462 5.28 0.00 0.00 2.87
115 116 7.229506 CCAAACAGGGCCTAAAATATAGAGAAG 59.770 40.741 5.28 0.00 0.00 2.85
117 118 7.068686 ACAGGGCCTAAAATATAGAGAAGAC 57.931 40.000 5.28 0.00 0.00 3.01
118 119 6.847036 ACAGGGCCTAAAATATAGAGAAGACT 59.153 38.462 5.28 0.00 0.00 3.24
120 121 6.271159 AGGGCCTAAAATATAGAGAAGACTGG 59.729 42.308 2.82 0.00 0.00 4.00
121 122 6.043358 GGGCCTAAAATATAGAGAAGACTGGT 59.957 42.308 0.84 0.00 0.00 4.00
122 123 7.234988 GGGCCTAAAATATAGAGAAGACTGGTA 59.765 40.741 0.84 0.00 0.00 3.25
123 124 8.817876 GGCCTAAAATATAGAGAAGACTGGTAT 58.182 37.037 0.00 0.00 0.00 2.73
124 125 9.646427 GCCTAAAATATAGAGAAGACTGGTATG 57.354 37.037 0.00 0.00 0.00 2.39
125 126 9.646427 CCTAAAATATAGAGAAGACTGGTATGC 57.354 37.037 0.00 0.00 0.00 3.14
133 134 7.461182 AGAGAAGACTGGTATGCATAGTATC 57.539 40.000 6.67 6.05 0.00 2.24
134 135 7.237982 AGAGAAGACTGGTATGCATAGTATCT 58.762 38.462 6.67 10.44 0.00 1.98
137 138 4.221703 AGACTGGTATGCATAGTATCTGGC 59.778 45.833 6.67 4.14 0.00 4.85
138 139 3.056536 ACTGGTATGCATAGTATCTGGCG 60.057 47.826 6.67 0.00 0.00 5.69
139 140 3.161866 TGGTATGCATAGTATCTGGCGA 58.838 45.455 6.67 0.00 0.00 5.54
140 141 3.576550 TGGTATGCATAGTATCTGGCGAA 59.423 43.478 6.67 0.00 0.00 4.70
141 142 4.177026 GGTATGCATAGTATCTGGCGAAG 58.823 47.826 6.67 0.00 0.00 3.79
158 159 4.935885 CGAAGCTCTAGCAATTTGAGTT 57.064 40.909 4.54 0.00 45.16 3.01
159 160 5.288543 CGAAGCTCTAGCAATTTGAGTTT 57.711 39.130 4.54 0.00 45.16 2.66
160 161 6.408858 CGAAGCTCTAGCAATTTGAGTTTA 57.591 37.500 4.54 0.00 45.16 2.01
161 162 6.473521 CGAAGCTCTAGCAATTTGAGTTTAG 58.526 40.000 4.54 0.00 45.16 1.85
162 163 6.091441 CGAAGCTCTAGCAATTTGAGTTTAGT 59.909 38.462 4.54 0.00 45.16 2.24
163 164 6.734104 AGCTCTAGCAATTTGAGTTTAGTG 57.266 37.500 4.54 0.00 45.16 2.74
164 165 6.234177 AGCTCTAGCAATTTGAGTTTAGTGT 58.766 36.000 4.54 0.00 45.16 3.55
165 166 7.386851 AGCTCTAGCAATTTGAGTTTAGTGTA 58.613 34.615 4.54 0.00 45.16 2.90
166 167 7.547370 AGCTCTAGCAATTTGAGTTTAGTGTAG 59.453 37.037 4.54 0.00 45.16 2.74
167 168 7.201565 GCTCTAGCAATTTGAGTTTAGTGTAGG 60.202 40.741 0.00 0.00 41.59 3.18
168 169 7.903145 TCTAGCAATTTGAGTTTAGTGTAGGA 58.097 34.615 0.00 0.00 0.00 2.94
169 170 8.540388 TCTAGCAATTTGAGTTTAGTGTAGGAT 58.460 33.333 0.00 0.00 0.00 3.24
170 171 9.817809 CTAGCAATTTGAGTTTAGTGTAGGATA 57.182 33.333 0.00 0.00 0.00 2.59
171 172 8.723942 AGCAATTTGAGTTTAGTGTAGGATAG 57.276 34.615 0.00 0.00 0.00 2.08
172 173 8.322091 AGCAATTTGAGTTTAGTGTAGGATAGT 58.678 33.333 0.00 0.00 0.00 2.12
173 174 8.947115 GCAATTTGAGTTTAGTGTAGGATAGTT 58.053 33.333 0.00 0.00 0.00 2.24
177 178 9.841295 TTTGAGTTTAGTGTAGGATAGTTTTGT 57.159 29.630 0.00 0.00 0.00 2.83
178 179 8.827177 TGAGTTTAGTGTAGGATAGTTTTGTG 57.173 34.615 0.00 0.00 0.00 3.33
179 180 7.386848 TGAGTTTAGTGTAGGATAGTTTTGTGC 59.613 37.037 0.00 0.00 0.00 4.57
180 181 6.367969 AGTTTAGTGTAGGATAGTTTTGTGCG 59.632 38.462 0.00 0.00 0.00 5.34
181 182 3.596214 AGTGTAGGATAGTTTTGTGCGG 58.404 45.455 0.00 0.00 0.00 5.69
182 183 2.676342 GTGTAGGATAGTTTTGTGCGGG 59.324 50.000 0.00 0.00 0.00 6.13
183 184 2.303600 TGTAGGATAGTTTTGTGCGGGT 59.696 45.455 0.00 0.00 0.00 5.28
184 185 2.579410 AGGATAGTTTTGTGCGGGTT 57.421 45.000 0.00 0.00 0.00 4.11
185 186 2.871453 AGGATAGTTTTGTGCGGGTTT 58.129 42.857 0.00 0.00 0.00 3.27
186 187 2.817844 AGGATAGTTTTGTGCGGGTTTC 59.182 45.455 0.00 0.00 0.00 2.78
187 188 2.554893 GGATAGTTTTGTGCGGGTTTCA 59.445 45.455 0.00 0.00 0.00 2.69
188 189 3.561503 GATAGTTTTGTGCGGGTTTCAC 58.438 45.455 0.00 0.00 35.14 3.18
189 190 0.099791 AGTTTTGTGCGGGTTTCACG 59.900 50.000 0.00 0.00 37.26 4.35
190 191 0.868177 GTTTTGTGCGGGTTTCACGG 60.868 55.000 0.00 0.00 37.26 4.94
191 192 2.005960 TTTTGTGCGGGTTTCACGGG 62.006 55.000 0.00 0.00 37.26 5.28
192 193 2.888464 TTTGTGCGGGTTTCACGGGA 62.888 55.000 0.00 0.00 37.26 5.14
193 194 3.351416 GTGCGGGTTTCACGGGAC 61.351 66.667 0.00 0.00 0.00 4.46
194 195 3.552384 TGCGGGTTTCACGGGACT 61.552 61.111 0.00 0.00 0.00 3.85
195 196 2.741211 GCGGGTTTCACGGGACTC 60.741 66.667 0.00 0.00 0.00 3.36
196 197 2.738480 CGGGTTTCACGGGACTCA 59.262 61.111 0.00 0.00 0.00 3.41
197 198 1.666872 CGGGTTTCACGGGACTCAC 60.667 63.158 0.00 0.00 0.00 3.51
198 199 1.302271 GGGTTTCACGGGACTCACC 60.302 63.158 0.00 0.00 38.08 4.02
208 209 2.662309 GGACTCACCCGTAAGTGGA 58.338 57.895 0.00 0.00 38.34 4.02
209 210 0.531200 GGACTCACCCGTAAGTGGAG 59.469 60.000 0.00 0.00 38.34 3.86
210 211 0.108756 GACTCACCCGTAAGTGGAGC 60.109 60.000 0.00 0.00 38.34 4.70
211 212 0.830444 ACTCACCCGTAAGTGGAGCA 60.830 55.000 0.00 0.00 38.34 4.26
212 213 0.320374 CTCACCCGTAAGTGGAGCAA 59.680 55.000 0.00 0.00 38.34 3.91
213 214 0.981183 TCACCCGTAAGTGGAGCAAT 59.019 50.000 0.00 0.00 38.34 3.56
214 215 1.349688 TCACCCGTAAGTGGAGCAATT 59.650 47.619 0.00 0.00 38.34 2.32
215 216 2.159382 CACCCGTAAGTGGAGCAATTT 58.841 47.619 0.00 0.00 33.95 1.82
216 217 2.095263 CACCCGTAAGTGGAGCAATTTG 60.095 50.000 0.00 0.00 33.95 2.32
217 218 1.472480 CCCGTAAGTGGAGCAATTTGG 59.528 52.381 0.00 0.00 0.00 3.28
218 219 2.159382 CCGTAAGTGGAGCAATTTGGT 58.841 47.619 0.00 0.00 0.00 3.67
219 220 2.556622 CCGTAAGTGGAGCAATTTGGTT 59.443 45.455 2.14 0.00 0.00 3.67
220 221 3.365969 CCGTAAGTGGAGCAATTTGGTTC 60.366 47.826 2.14 0.87 0.00 3.62
221 222 3.502211 CGTAAGTGGAGCAATTTGGTTCT 59.498 43.478 8.28 3.10 0.00 3.01
222 223 4.378459 CGTAAGTGGAGCAATTTGGTTCTC 60.378 45.833 8.28 4.84 0.00 2.87
223 224 2.519013 AGTGGAGCAATTTGGTTCTCC 58.481 47.619 8.28 10.52 44.04 3.71
224 225 1.200020 GTGGAGCAATTTGGTTCTCCG 59.800 52.381 8.28 0.00 46.10 4.63
225 226 1.073125 TGGAGCAATTTGGTTCTCCGA 59.927 47.619 8.28 0.86 46.10 4.55
226 227 1.740025 GGAGCAATTTGGTTCTCCGAG 59.260 52.381 2.14 0.00 36.18 4.63
227 228 1.131315 GAGCAATTTGGTTCTCCGAGC 59.869 52.381 2.14 0.00 36.30 5.03
228 229 0.881118 GCAATTTGGTTCTCCGAGCA 59.119 50.000 0.00 0.00 36.30 4.26
229 230 1.269448 GCAATTTGGTTCTCCGAGCAA 59.731 47.619 0.00 0.00 35.43 3.91
230 231 2.094545 GCAATTTGGTTCTCCGAGCAAT 60.095 45.455 0.00 0.00 36.95 3.56
231 232 3.504863 CAATTTGGTTCTCCGAGCAATG 58.495 45.455 0.00 0.00 36.95 2.82
232 233 0.881118 TTTGGTTCTCCGAGCAATGC 59.119 50.000 0.00 0.00 36.95 3.56
233 234 0.036732 TTGGTTCTCCGAGCAATGCT 59.963 50.000 7.79 7.79 43.88 3.79
234 235 0.901827 TGGTTCTCCGAGCAATGCTA 59.098 50.000 8.12 0.00 39.88 3.49
235 236 1.291132 GGTTCTCCGAGCAATGCTAC 58.709 55.000 8.12 0.71 39.88 3.58
236 237 1.405526 GGTTCTCCGAGCAATGCTACA 60.406 52.381 8.12 0.00 39.88 2.74
237 238 1.661112 GTTCTCCGAGCAATGCTACAC 59.339 52.381 8.12 0.00 39.88 2.90
238 239 1.186200 TCTCCGAGCAATGCTACACT 58.814 50.000 8.12 0.00 39.88 3.55
239 240 1.550524 TCTCCGAGCAATGCTACACTT 59.449 47.619 8.12 0.00 39.88 3.16
240 241 2.758423 TCTCCGAGCAATGCTACACTTA 59.242 45.455 8.12 0.00 39.88 2.24
241 242 2.860735 CTCCGAGCAATGCTACACTTAC 59.139 50.000 8.12 0.00 39.88 2.34
242 243 2.232696 TCCGAGCAATGCTACACTTACA 59.767 45.455 8.12 0.00 39.88 2.41
243 244 2.604914 CCGAGCAATGCTACACTTACAG 59.395 50.000 8.12 0.00 39.88 2.74
244 245 2.604914 CGAGCAATGCTACACTTACAGG 59.395 50.000 8.12 0.00 39.88 4.00
245 246 3.600388 GAGCAATGCTACACTTACAGGT 58.400 45.455 8.12 0.00 39.88 4.00
246 247 4.676986 CGAGCAATGCTACACTTACAGGTA 60.677 45.833 8.12 0.00 39.88 3.08
247 248 4.759782 AGCAATGCTACACTTACAGGTAG 58.240 43.478 5.69 0.00 36.99 3.18
248 249 4.466370 AGCAATGCTACACTTACAGGTAGA 59.534 41.667 5.69 0.00 39.43 2.59
249 250 5.129485 AGCAATGCTACACTTACAGGTAGAT 59.871 40.000 5.69 0.00 39.43 1.98
250 251 5.817816 GCAATGCTACACTTACAGGTAGATT 59.182 40.000 0.00 0.00 39.43 2.40
251 252 6.316390 GCAATGCTACACTTACAGGTAGATTT 59.684 38.462 0.00 0.00 39.43 2.17
252 253 7.148239 GCAATGCTACACTTACAGGTAGATTTT 60.148 37.037 0.00 0.00 39.43 1.82
253 254 8.391106 CAATGCTACACTTACAGGTAGATTTTC 58.609 37.037 0.00 0.00 39.43 2.29
254 255 6.999950 TGCTACACTTACAGGTAGATTTTCA 58.000 36.000 0.00 0.00 39.43 2.69
255 256 7.620880 TGCTACACTTACAGGTAGATTTTCAT 58.379 34.615 0.00 0.00 39.43 2.57
256 257 7.549134 TGCTACACTTACAGGTAGATTTTCATG 59.451 37.037 0.00 0.00 39.43 3.07
257 258 7.011482 GCTACACTTACAGGTAGATTTTCATGG 59.989 40.741 0.00 0.00 39.43 3.66
258 259 7.016153 ACACTTACAGGTAGATTTTCATGGA 57.984 36.000 0.00 0.00 0.00 3.41
259 260 7.458397 ACACTTACAGGTAGATTTTCATGGAA 58.542 34.615 0.00 0.00 0.00 3.53
260 261 8.109634 ACACTTACAGGTAGATTTTCATGGAAT 58.890 33.333 0.00 0.00 0.00 3.01
261 262 9.613428 CACTTACAGGTAGATTTTCATGGAATA 57.387 33.333 0.00 0.00 0.00 1.75
265 266 8.469309 ACAGGTAGATTTTCATGGAATAATGG 57.531 34.615 0.00 0.00 0.00 3.16
266 267 8.061304 ACAGGTAGATTTTCATGGAATAATGGT 58.939 33.333 0.00 0.00 0.00 3.55
267 268 8.917088 CAGGTAGATTTTCATGGAATAATGGTT 58.083 33.333 0.00 0.00 0.00 3.67
270 271 9.878599 GTAGATTTTCATGGAATAATGGTTACG 57.121 33.333 0.00 0.00 0.00 3.18
271 272 7.940850 AGATTTTCATGGAATAATGGTTACGG 58.059 34.615 0.00 0.00 0.00 4.02
272 273 7.777910 AGATTTTCATGGAATAATGGTTACGGA 59.222 33.333 0.00 0.00 0.00 4.69
273 274 6.687081 TTTCATGGAATAATGGTTACGGAC 57.313 37.500 0.00 0.00 0.00 4.79
274 275 5.360649 TCATGGAATAATGGTTACGGACA 57.639 39.130 0.00 0.00 0.00 4.02
275 276 5.935945 TCATGGAATAATGGTTACGGACAT 58.064 37.500 0.00 0.00 0.00 3.06
276 277 5.762711 TCATGGAATAATGGTTACGGACATG 59.237 40.000 0.00 0.00 34.80 3.21
277 278 3.880490 TGGAATAATGGTTACGGACATGC 59.120 43.478 0.00 0.00 0.00 4.06
278 279 3.880490 GGAATAATGGTTACGGACATGCA 59.120 43.478 0.00 0.00 0.00 3.96
279 280 4.518970 GGAATAATGGTTACGGACATGCAT 59.481 41.667 0.00 0.00 0.00 3.96
280 281 5.437289 AATAATGGTTACGGACATGCATG 57.563 39.130 25.09 25.09 0.00 4.06
281 282 1.679139 ATGGTTACGGACATGCATGG 58.321 50.000 29.41 14.96 0.00 3.66
282 283 1.029408 TGGTTACGGACATGCATGGC 61.029 55.000 29.41 27.45 34.16 4.40
283 284 1.029408 GGTTACGGACATGCATGGCA 61.029 55.000 32.84 11.15 44.86 4.92
295 296 3.130280 TGCATGGCATCATTAGATCGT 57.870 42.857 0.00 0.00 31.71 3.73
296 297 2.809696 TGCATGGCATCATTAGATCGTG 59.190 45.455 0.00 0.00 31.71 4.35
297 298 2.161012 GCATGGCATCATTAGATCGTGG 59.839 50.000 0.00 0.00 30.20 4.94
298 299 2.549064 TGGCATCATTAGATCGTGGG 57.451 50.000 0.00 0.00 30.20 4.61
299 300 2.046292 TGGCATCATTAGATCGTGGGA 58.954 47.619 0.00 0.00 30.20 4.37
300 301 2.037641 TGGCATCATTAGATCGTGGGAG 59.962 50.000 0.00 0.00 30.20 4.30
301 302 2.613977 GGCATCATTAGATCGTGGGAGG 60.614 54.545 0.00 0.00 30.20 4.30
302 303 2.300152 GCATCATTAGATCGTGGGAGGA 59.700 50.000 0.00 0.00 30.20 3.71
303 304 3.616076 GCATCATTAGATCGTGGGAGGAG 60.616 52.174 0.00 0.00 30.20 3.69
304 305 3.314307 TCATTAGATCGTGGGAGGAGT 57.686 47.619 0.00 0.00 0.00 3.85
305 306 2.959030 TCATTAGATCGTGGGAGGAGTG 59.041 50.000 0.00 0.00 0.00 3.51
306 307 1.112113 TTAGATCGTGGGAGGAGTGC 58.888 55.000 0.00 0.00 0.00 4.40
307 308 0.755698 TAGATCGTGGGAGGAGTGCC 60.756 60.000 0.00 0.00 33.79 5.01
308 309 2.284625 ATCGTGGGAGGAGTGCCA 60.285 61.111 0.00 0.00 43.09 4.92
312 313 4.066614 TGGGAGGAGTGCCATACC 57.933 61.111 0.00 0.00 39.76 2.73
313 314 1.692749 TGGGAGGAGTGCCATACCC 60.693 63.158 0.00 0.00 39.76 3.69
314 315 2.452937 GGGAGGAGTGCCATACCCC 61.453 68.421 0.00 0.00 37.92 4.95
315 316 1.384643 GGAGGAGTGCCATACCCCT 60.385 63.158 0.00 0.00 40.75 4.79
316 317 1.700042 GGAGGAGTGCCATACCCCTG 61.700 65.000 0.00 0.00 37.69 4.45
317 318 0.691078 GAGGAGTGCCATACCCCTGA 60.691 60.000 0.00 0.00 37.69 3.86
318 319 0.253160 AGGAGTGCCATACCCCTGAA 60.253 55.000 0.00 0.00 35.96 3.02
319 320 0.623723 GGAGTGCCATACCCCTGAAA 59.376 55.000 0.00 0.00 0.00 2.69
320 321 1.682087 GGAGTGCCATACCCCTGAAAC 60.682 57.143 0.00 0.00 0.00 2.78
321 322 1.282157 GAGTGCCATACCCCTGAAACT 59.718 52.381 0.00 0.00 0.00 2.66
322 323 1.004745 AGTGCCATACCCCTGAAACTG 59.995 52.381 0.00 0.00 0.00 3.16
323 324 1.004277 GTGCCATACCCCTGAAACTGA 59.996 52.381 0.00 0.00 0.00 3.41
324 325 1.281867 TGCCATACCCCTGAAACTGAG 59.718 52.381 0.00 0.00 0.00 3.35
325 326 1.408822 GCCATACCCCTGAAACTGAGG 60.409 57.143 0.00 0.00 0.00 3.86
329 330 2.356667 CCCTGAAACTGAGGGGGC 59.643 66.667 0.00 0.00 46.01 5.80
330 331 2.045926 CCTGAAACTGAGGGGGCG 60.046 66.667 0.00 0.00 0.00 6.13
331 332 2.045926 CTGAAACTGAGGGGGCGG 60.046 66.667 0.00 0.00 0.00 6.13
332 333 3.628646 CTGAAACTGAGGGGGCGGG 62.629 68.421 0.00 0.00 0.00 6.13
333 334 4.426313 GAAACTGAGGGGGCGGGG 62.426 72.222 0.00 0.00 0.00 5.73
334 335 4.995058 AAACTGAGGGGGCGGGGA 62.995 66.667 0.00 0.00 0.00 4.81
335 336 4.760220 AACTGAGGGGGCGGGGAT 62.760 66.667 0.00 0.00 0.00 3.85
340 341 4.863222 AGGGGGCGGGGATGGATT 62.863 66.667 0.00 0.00 0.00 3.01
341 342 2.856988 GGGGGCGGGGATGGATTA 60.857 66.667 0.00 0.00 0.00 1.75
342 343 2.757077 GGGGCGGGGATGGATTAG 59.243 66.667 0.00 0.00 0.00 1.73
343 344 1.846124 GGGGCGGGGATGGATTAGA 60.846 63.158 0.00 0.00 0.00 2.10
344 345 1.423794 GGGGCGGGGATGGATTAGAA 61.424 60.000 0.00 0.00 0.00 2.10
345 346 0.036875 GGGCGGGGATGGATTAGAAG 59.963 60.000 0.00 0.00 0.00 2.85
346 347 0.606673 GGCGGGGATGGATTAGAAGC 60.607 60.000 0.00 0.00 0.00 3.86
347 348 0.398318 GCGGGGATGGATTAGAAGCT 59.602 55.000 0.00 0.00 0.00 3.74
348 349 1.879796 GCGGGGATGGATTAGAAGCTG 60.880 57.143 0.00 0.00 0.00 4.24
349 350 1.879796 CGGGGATGGATTAGAAGCTGC 60.880 57.143 0.00 0.00 0.00 5.25
350 351 1.546548 GGGGATGGATTAGAAGCTGCC 60.547 57.143 0.00 0.00 0.00 4.85
351 352 1.143684 GGGATGGATTAGAAGCTGCCA 59.856 52.381 0.00 0.00 0.00 4.92
352 353 2.225467 GGATGGATTAGAAGCTGCCAC 58.775 52.381 0.00 0.00 0.00 5.01
353 354 2.421952 GGATGGATTAGAAGCTGCCACA 60.422 50.000 0.00 0.00 0.00 4.17
354 355 3.484407 GATGGATTAGAAGCTGCCACAT 58.516 45.455 0.00 0.00 0.00 3.21
355 356 2.923121 TGGATTAGAAGCTGCCACATC 58.077 47.619 0.00 0.00 0.00 3.06
356 357 1.869767 GGATTAGAAGCTGCCACATCG 59.130 52.381 0.00 0.00 0.00 3.84
357 358 1.869767 GATTAGAAGCTGCCACATCGG 59.130 52.381 0.00 0.00 38.11 4.18
358 359 0.613260 TTAGAAGCTGCCACATCGGT 59.387 50.000 0.00 0.00 36.97 4.69
359 360 0.175760 TAGAAGCTGCCACATCGGTC 59.824 55.000 0.00 0.00 36.97 4.79
360 361 2.045926 AAGCTGCCACATCGGTCC 60.046 61.111 0.00 0.00 36.97 4.46
361 362 3.958147 AAGCTGCCACATCGGTCCG 62.958 63.158 4.39 4.39 36.97 4.79
362 363 4.760047 GCTGCCACATCGGTCCGT 62.760 66.667 11.88 0.00 36.97 4.69
363 364 2.889617 CTGCCACATCGGTCCGTA 59.110 61.111 11.88 0.00 36.97 4.02
364 365 1.226974 CTGCCACATCGGTCCGTAG 60.227 63.158 11.88 7.65 36.97 3.51
365 366 2.106332 GCCACATCGGTCCGTAGG 59.894 66.667 11.88 10.03 43.31 3.18
381 382 3.654414 CGTAGGATAGCTCCCATGAAAC 58.346 50.000 7.69 0.00 43.21 2.78
382 383 3.322254 CGTAGGATAGCTCCCATGAAACT 59.678 47.826 7.69 0.00 43.21 2.66
383 384 4.559704 CGTAGGATAGCTCCCATGAAACTC 60.560 50.000 7.69 0.00 43.21 3.01
384 385 3.387962 AGGATAGCTCCCATGAAACTCA 58.612 45.455 7.69 0.00 43.21 3.41
385 386 3.135530 AGGATAGCTCCCATGAAACTCAC 59.864 47.826 7.69 0.00 43.21 3.51
386 387 3.471680 GATAGCTCCCATGAAACTCACC 58.528 50.000 0.00 0.00 0.00 4.02
387 388 0.329596 AGCTCCCATGAAACTCACCC 59.670 55.000 0.00 0.00 0.00 4.61
388 389 1.026718 GCTCCCATGAAACTCACCCG 61.027 60.000 0.00 0.00 0.00 5.28
389 390 0.324943 CTCCCATGAAACTCACCCGT 59.675 55.000 0.00 0.00 0.00 5.28
390 391 1.553248 CTCCCATGAAACTCACCCGTA 59.447 52.381 0.00 0.00 0.00 4.02
391 392 1.553248 TCCCATGAAACTCACCCGTAG 59.447 52.381 0.00 0.00 0.00 3.51
414 415 0.308684 GCATCATGCATGTGTACCCG 59.691 55.000 25.43 8.94 44.26 5.28
415 416 1.667236 CATCATGCATGTGTACCCGT 58.333 50.000 25.43 1.49 0.00 5.28
416 417 1.599071 CATCATGCATGTGTACCCGTC 59.401 52.381 25.43 0.00 0.00 4.79
417 418 0.610687 TCATGCATGTGTACCCGTCA 59.389 50.000 25.43 0.00 0.00 4.35
418 419 0.726827 CATGCATGTGTACCCGTCAC 59.273 55.000 18.91 0.00 36.48 3.67
420 421 0.601576 TGCATGTGTACCCGTCACAC 60.602 55.000 0.89 4.89 46.26 3.82
421 422 1.296056 GCATGTGTACCCGTCACACC 61.296 60.000 8.41 0.00 46.26 4.16
422 423 0.672401 CATGTGTACCCGTCACACCC 60.672 60.000 8.41 0.00 46.26 4.61
423 424 1.833787 ATGTGTACCCGTCACACCCC 61.834 60.000 8.41 0.00 46.26 4.95
424 425 2.924101 TGTACCCGTCACACCCCC 60.924 66.667 0.00 0.00 0.00 5.40
425 426 2.605601 GTACCCGTCACACCCCCT 60.606 66.667 0.00 0.00 0.00 4.79
426 427 1.305213 GTACCCGTCACACCCCCTA 60.305 63.158 0.00 0.00 0.00 3.53
427 428 0.904394 GTACCCGTCACACCCCCTAA 60.904 60.000 0.00 0.00 0.00 2.69
428 429 0.615544 TACCCGTCACACCCCCTAAG 60.616 60.000 0.00 0.00 0.00 2.18
429 430 2.666098 CCCGTCACACCCCCTAAGG 61.666 68.421 0.00 0.00 0.00 2.69
430 431 1.916777 CCGTCACACCCCCTAAGGT 60.917 63.158 0.00 0.00 42.40 3.50
440 441 4.228237 ACCCCCTAAGGTGATATGATCA 57.772 45.455 0.00 0.00 39.24 2.92
441 442 4.171234 ACCCCCTAAGGTGATATGATCAG 58.829 47.826 0.09 0.00 40.53 2.90
493 494 8.755696 TGTGGTAAGCAATTCAAAACATAATC 57.244 30.769 0.00 0.00 0.00 1.75
500 501 7.215789 AGCAATTCAAAACATAATCAACACCA 58.784 30.769 0.00 0.00 0.00 4.17
618 622 2.361610 CCGCCTTGGTTGATGCCT 60.362 61.111 0.00 0.00 0.00 4.75
647 651 4.789807 AGTTGAGGATTGAATATGCTGCT 58.210 39.130 0.00 0.00 0.00 4.24
648 652 4.579340 AGTTGAGGATTGAATATGCTGCTG 59.421 41.667 0.00 0.00 0.00 4.41
650 654 2.228343 GAGGATTGAATATGCTGCTGCC 59.772 50.000 13.47 0.00 38.71 4.85
651 655 1.958579 GGATTGAATATGCTGCTGCCA 59.041 47.619 13.47 1.12 38.71 4.92
652 656 2.288030 GGATTGAATATGCTGCTGCCAC 60.288 50.000 13.47 1.06 38.71 5.01
653 657 1.836802 TTGAATATGCTGCTGCCACA 58.163 45.000 13.47 3.56 38.71 4.17
654 658 1.385528 TGAATATGCTGCTGCCACAG 58.614 50.000 13.47 0.00 40.80 3.66
657 661 0.034767 ATATGCTGCTGCCACAGTGT 60.035 50.000 13.47 0.00 39.96 3.55
658 662 0.250858 TATGCTGCTGCCACAGTGTT 60.251 50.000 13.47 0.00 39.96 3.32
659 663 1.111116 ATGCTGCTGCCACAGTGTTT 61.111 50.000 13.47 0.00 39.96 2.83
892 907 1.093159 CAGCCAGCAGACAAGATTCC 58.907 55.000 0.00 0.00 0.00 3.01
894 909 1.284198 AGCCAGCAGACAAGATTCCAT 59.716 47.619 0.00 0.00 0.00 3.41
895 910 1.404391 GCCAGCAGACAAGATTCCATG 59.596 52.381 0.00 0.00 0.00 3.66
896 911 2.022195 CCAGCAGACAAGATTCCATGG 58.978 52.381 4.97 4.97 0.00 3.66
897 912 2.356432 CCAGCAGACAAGATTCCATGGA 60.356 50.000 11.44 11.44 0.00 3.41
898 913 2.943690 CAGCAGACAAGATTCCATGGAG 59.056 50.000 15.53 5.41 0.00 3.86
899 914 2.092538 AGCAGACAAGATTCCATGGAGG 60.093 50.000 15.53 6.25 39.47 4.30
900 915 2.356535 GCAGACAAGATTCCATGGAGGT 60.357 50.000 15.53 8.03 39.02 3.85
901 916 3.875369 GCAGACAAGATTCCATGGAGGTT 60.875 47.826 15.53 7.00 39.02 3.50
929 944 1.710919 CGCGCGTGCCTATAAAACA 59.289 52.632 24.19 0.00 38.08 2.83
969 985 0.771127 AGTACACCCACAGCCACATT 59.229 50.000 0.00 0.00 0.00 2.71
970 986 1.144913 AGTACACCCACAGCCACATTT 59.855 47.619 0.00 0.00 0.00 2.32
1033 1080 1.181741 TGCTCGTCTCCTGCTTGTCT 61.182 55.000 0.00 0.00 0.00 3.41
1038 1085 1.080501 TCTCCTGCTTGTCTTCGCG 60.081 57.895 0.00 0.00 0.00 5.87
1039 1086 1.080501 CTCCTGCTTGTCTTCGCGA 60.081 57.895 3.71 3.71 0.00 5.87
1668 1715 1.374758 CTTCGAGGAGCGGCTGTTT 60.375 57.895 7.50 0.00 41.33 2.83
1995 2042 2.434884 CGCACGGACTGCTCCATT 60.435 61.111 0.00 0.00 44.64 3.16
2196 2252 5.631026 CAAGACCGAACCAGTTGAATAATG 58.369 41.667 0.00 0.00 0.00 1.90
2199 2255 4.906618 ACCGAACCAGTTGAATAATGAGT 58.093 39.130 0.00 0.00 0.00 3.41
2200 2256 5.313712 ACCGAACCAGTTGAATAATGAGTT 58.686 37.500 0.00 0.00 0.00 3.01
2201 2257 5.181245 ACCGAACCAGTTGAATAATGAGTTG 59.819 40.000 0.00 0.00 0.00 3.16
2204 2260 7.138736 CGAACCAGTTGAATAATGAGTTGTTT 58.861 34.615 0.00 0.00 0.00 2.83
2206 2262 8.647143 AACCAGTTGAATAATGAGTTGTTTTG 57.353 30.769 0.00 0.00 0.00 2.44
2210 2266 9.299963 CAGTTGAATAATGAGTTGTTTTGTTGA 57.700 29.630 0.00 0.00 0.00 3.18
2219 2275 7.928908 TGAGTTGTTTTGTTGAAATATCTGC 57.071 32.000 0.00 0.00 0.00 4.26
2220 2276 6.922957 TGAGTTGTTTTGTTGAAATATCTGCC 59.077 34.615 0.00 0.00 0.00 4.85
2221 2277 7.054491 AGTTGTTTTGTTGAAATATCTGCCT 57.946 32.000 0.00 0.00 0.00 4.75
2222 2278 8.177119 AGTTGTTTTGTTGAAATATCTGCCTA 57.823 30.769 0.00 0.00 0.00 3.93
2223 2279 8.806146 AGTTGTTTTGTTGAAATATCTGCCTAT 58.194 29.630 0.00 0.00 0.00 2.57
2224 2280 8.863049 GTTGTTTTGTTGAAATATCTGCCTATG 58.137 33.333 0.00 0.00 0.00 2.23
2226 2282 8.028354 TGTTTTGTTGAAATATCTGCCTATGTG 58.972 33.333 0.00 0.00 0.00 3.21
2228 2284 7.558161 TTGTTGAAATATCTGCCTATGTGAG 57.442 36.000 0.00 0.00 0.00 3.51
2245 2301 2.619013 GAGGAAAATTGCTCACCGTG 57.381 50.000 9.47 0.00 44.05 4.94
2246 2302 2.151202 GAGGAAAATTGCTCACCGTGA 58.849 47.619 9.47 0.29 44.05 4.35
2248 2304 2.293399 AGGAAAATTGCTCACCGTGAAC 59.707 45.455 2.19 0.00 0.00 3.18
2249 2305 2.034053 GGAAAATTGCTCACCGTGAACA 59.966 45.455 2.19 1.21 0.00 3.18
2250 2306 3.305335 GGAAAATTGCTCACCGTGAACAT 60.305 43.478 5.48 0.00 0.00 2.71
2252 2308 5.446143 AAAATTGCTCACCGTGAACATTA 57.554 34.783 5.48 0.00 0.00 1.90
2345 2403 8.853126 ACCGATAAACATTTGATTGATGATCAT 58.147 29.630 8.25 8.25 44.01 2.45
2366 2424 8.885494 ATCATTTTTGAGGAAAATTTCGTTGA 57.115 26.923 2.32 2.26 43.65 3.18
2373 2431 8.885494 TTGAGGAAAATTTCGTTGATGATTTT 57.115 26.923 2.32 0.00 35.18 1.82
2407 5560 6.073369 CACTTAGTTGTCATGTGTCAAATCG 58.927 40.000 0.00 0.00 0.00 3.34
2423 5576 5.986135 GTCAAATCGATAACTGATGCCTACT 59.014 40.000 0.00 0.00 0.00 2.57
2540 5693 6.476706 GCAATATGTAAGTTGCCTGGAAATTC 59.523 38.462 0.00 0.00 43.65 2.17
2541 5694 7.631377 GCAATATGTAAGTTGCCTGGAAATTCT 60.631 37.037 0.00 0.00 43.65 2.40
2553 5706 5.360999 GCCTGGAAATTCTATTTGGCTTACT 59.639 40.000 0.00 0.00 36.52 2.24
2554 5707 6.460261 GCCTGGAAATTCTATTTGGCTTACTC 60.460 42.308 0.00 0.00 36.52 2.59
2555 5708 6.238484 CCTGGAAATTCTATTTGGCTTACTCG 60.238 42.308 0.00 0.00 0.00 4.18
2556 5709 6.411376 TGGAAATTCTATTTGGCTTACTCGA 58.589 36.000 0.00 0.00 0.00 4.04
2557 5710 6.882140 TGGAAATTCTATTTGGCTTACTCGAA 59.118 34.615 0.00 0.00 0.00 3.71
2558 5711 7.556275 TGGAAATTCTATTTGGCTTACTCGAAT 59.444 33.333 0.00 0.00 0.00 3.34
2559 5712 9.052759 GGAAATTCTATTTGGCTTACTCGAATA 57.947 33.333 0.00 0.00 0.00 1.75
2586 5739 2.094338 GGCCCTTGATTTCTGCTTCAAG 60.094 50.000 0.00 5.83 45.40 3.02
2597 5750 2.294233 TCTGCTTCAAGATTTGTGCACC 59.706 45.455 15.69 0.00 36.74 5.01
2608 5762 5.111293 AGATTTGTGCACCTTTTGTTTCTG 58.889 37.500 15.69 0.00 0.00 3.02
2618 5772 5.010282 ACCTTTTGTTTCTGTTGTGACTCT 58.990 37.500 0.00 0.00 0.00 3.24
2622 5776 5.957842 TTGTTTCTGTTGTGACTCTTGTT 57.042 34.783 0.00 0.00 0.00 2.83
2623 5777 5.545658 TGTTTCTGTTGTGACTCTTGTTC 57.454 39.130 0.00 0.00 0.00 3.18
2624 5778 4.092821 TGTTTCTGTTGTGACTCTTGTTCG 59.907 41.667 0.00 0.00 0.00 3.95
2626 5780 1.261619 CTGTTGTGACTCTTGTTCGGC 59.738 52.381 0.00 0.00 0.00 5.54
2627 5781 1.295792 GTTGTGACTCTTGTTCGGCA 58.704 50.000 0.00 0.00 0.00 5.69
2628 5782 1.261619 GTTGTGACTCTTGTTCGGCAG 59.738 52.381 0.00 0.00 0.00 4.85
2651 5812 4.486125 AATTTCCAACCAAGCACTGTTT 57.514 36.364 0.00 0.00 0.00 2.83
2662 5823 3.550437 AGCACTGTTTTGAGTCAGTCT 57.450 42.857 0.00 0.00 42.05 3.24
2676 5837 9.702253 TTTGAGTCAGTCTATCTCTTATTAGGT 57.298 33.333 0.00 0.00 0.00 3.08
2685 5846 2.158957 TCTCTTATTAGGTTGCAGCCCG 60.159 50.000 16.95 0.00 0.00 6.13
2691 5852 0.037590 TAGGTTGCAGCCCGTTTCAT 59.962 50.000 16.95 0.00 0.00 2.57
2705 5873 2.226437 CGTTTCATGTTGCCTAGTGCTT 59.774 45.455 0.00 0.00 42.00 3.91
2715 5883 5.538433 TGTTGCCTAGTGCTTCCTTATTTTT 59.462 36.000 5.06 0.00 42.00 1.94
2716 5884 6.717540 TGTTGCCTAGTGCTTCCTTATTTTTA 59.282 34.615 5.06 0.00 42.00 1.52
2717 5885 7.396055 TGTTGCCTAGTGCTTCCTTATTTTTAT 59.604 33.333 5.06 0.00 42.00 1.40
2718 5886 7.333528 TGCCTAGTGCTTCCTTATTTTTATG 57.666 36.000 5.06 0.00 42.00 1.90
2887 6055 7.981789 TGGTTATTTTGTGCATCTCTAGTCTAG 59.018 37.037 0.00 0.00 0.00 2.43
2895 6063 6.544197 TGTGCATCTCTAGTCTAGTCCTAAAG 59.456 42.308 6.77 0.00 0.00 1.85
2912 6080 2.435203 AAGGGGGAGTTGGTAGTCTT 57.565 50.000 0.00 0.00 0.00 3.01
2926 6094 0.326264 AGTCTTGCCTCACATCCCAC 59.674 55.000 0.00 0.00 0.00 4.61
2930 6098 0.187117 TTGCCTCACATCCCACCAAA 59.813 50.000 0.00 0.00 0.00 3.28
2941 6109 6.158871 TCACATCCCACCAAACCTATATTACA 59.841 38.462 0.00 0.00 0.00 2.41
2946 6114 3.562557 CACCAAACCTATATTACACCCGC 59.437 47.826 0.00 0.00 0.00 6.13
2947 6115 3.143728 CCAAACCTATATTACACCCGCC 58.856 50.000 0.00 0.00 0.00 6.13
2964 6132 0.798771 GCCAGAGCGTCTTACAGTCG 60.799 60.000 0.00 0.00 0.00 4.18
2974 6142 3.728268 CGTCTTACAGTCGATCTTTCGCT 60.728 47.826 0.00 0.00 45.10 4.93
3035 6570 6.094719 TGCATTAACTCAATCAAATCAGCAC 58.905 36.000 0.00 0.00 0.00 4.40
3041 6576 5.776744 ACTCAATCAAATCAGCACTTTTCC 58.223 37.500 0.00 0.00 0.00 3.13
3046 6584 7.551974 TCAATCAAATCAGCACTTTTCCAAAAA 59.448 29.630 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.018779 CCTGTTTGGTTCCTGGGACTTATA 60.019 45.833 4.84 0.00 0.00 0.98
2 3 3.245264 CCTGTTTGGTTCCTGGGACTTAT 60.245 47.826 4.84 0.00 0.00 1.73
4 5 1.133482 CCTGTTTGGTTCCTGGGACTT 60.133 52.381 4.84 0.00 0.00 3.01
5 6 0.478507 CCTGTTTGGTTCCTGGGACT 59.521 55.000 4.84 0.00 0.00 3.85
6 7 0.539669 CCCTGTTTGGTTCCTGGGAC 60.540 60.000 0.00 0.00 41.13 4.46
7 8 0.699577 TCCCTGTTTGGTTCCTGGGA 60.700 55.000 0.00 0.00 44.00 4.37
9 10 0.771127 TCTCCCTGTTTGGTTCCTGG 59.229 55.000 0.00 0.00 0.00 4.45
10 11 1.699634 TCTCTCCCTGTTTGGTTCCTG 59.300 52.381 0.00 0.00 0.00 3.86
11 12 1.700186 GTCTCTCCCTGTTTGGTTCCT 59.300 52.381 0.00 0.00 0.00 3.36
13 14 3.493767 AAGTCTCTCCCTGTTTGGTTC 57.506 47.619 0.00 0.00 0.00 3.62
14 15 3.953542 AAAGTCTCTCCCTGTTTGGTT 57.046 42.857 0.00 0.00 0.00 3.67
15 16 3.953542 AAAAGTCTCTCCCTGTTTGGT 57.046 42.857 0.00 0.00 0.00 3.67
18 19 4.663592 TCCCTAAAAAGTCTCTCCCTGTTT 59.336 41.667 0.00 0.00 0.00 2.83
19 20 4.041815 GTCCCTAAAAAGTCTCTCCCTGTT 59.958 45.833 0.00 0.00 0.00 3.16
20 21 3.583526 GTCCCTAAAAAGTCTCTCCCTGT 59.416 47.826 0.00 0.00 0.00 4.00
21 22 3.841255 AGTCCCTAAAAAGTCTCTCCCTG 59.159 47.826 0.00 0.00 0.00 4.45
22 23 4.149090 AGTCCCTAAAAAGTCTCTCCCT 57.851 45.455 0.00 0.00 0.00 4.20
25 26 5.697178 GTCACAAGTCCCTAAAAAGTCTCTC 59.303 44.000 0.00 0.00 0.00 3.20
26 27 5.367060 AGTCACAAGTCCCTAAAAAGTCTCT 59.633 40.000 0.00 0.00 0.00 3.10
27 28 5.612351 AGTCACAAGTCCCTAAAAAGTCTC 58.388 41.667 0.00 0.00 0.00 3.36
29 30 7.981102 ATAAGTCACAAGTCCCTAAAAAGTC 57.019 36.000 0.00 0.00 0.00 3.01
30 31 9.503399 CTTATAAGTCACAAGTCCCTAAAAAGT 57.497 33.333 4.18 0.00 0.00 2.66
32 33 9.856162 AACTTATAAGTCACAAGTCCCTAAAAA 57.144 29.630 18.28 0.00 38.57 1.94
33 34 9.280174 CAACTTATAAGTCACAAGTCCCTAAAA 57.720 33.333 18.28 0.00 38.57 1.52
34 35 7.881232 CCAACTTATAAGTCACAAGTCCCTAAA 59.119 37.037 18.28 0.00 38.57 1.85
35 36 7.391620 CCAACTTATAAGTCACAAGTCCCTAA 58.608 38.462 18.28 0.00 38.57 2.69
37 38 5.280521 CCCAACTTATAAGTCACAAGTCCCT 60.281 44.000 18.28 0.00 38.57 4.20
38 39 4.941873 CCCAACTTATAAGTCACAAGTCCC 59.058 45.833 18.28 0.00 38.57 4.46
40 41 6.465084 AGTCCCAACTTATAAGTCACAAGTC 58.535 40.000 18.28 6.78 38.57 3.01
41 42 6.435292 AGTCCCAACTTATAAGTCACAAGT 57.565 37.500 18.28 5.74 38.57 3.16
42 43 8.842358 TTTAGTCCCAACTTATAAGTCACAAG 57.158 34.615 18.28 6.66 38.57 3.16
43 44 9.629878 TTTTTAGTCCCAACTTATAAGTCACAA 57.370 29.630 18.28 3.05 38.57 3.33
72 73 5.801380 TGTTTGGTTCATAAGTCCTAGGAC 58.199 41.667 31.29 31.29 44.86 3.85
73 74 5.045869 CCTGTTTGGTTCATAAGTCCTAGGA 60.046 44.000 7.62 7.62 0.00 2.94
74 75 5.186198 CCTGTTTGGTTCATAAGTCCTAGG 58.814 45.833 0.82 0.82 0.00 3.02
77 78 3.814316 GCCCTGTTTGGTTCATAAGTCCT 60.814 47.826 0.00 0.00 0.00 3.85
78 79 2.492088 GCCCTGTTTGGTTCATAAGTCC 59.508 50.000 0.00 0.00 0.00 3.85
79 80 2.492088 GGCCCTGTTTGGTTCATAAGTC 59.508 50.000 0.00 0.00 0.00 3.01
82 83 2.990740 AGGCCCTGTTTGGTTCATAA 57.009 45.000 0.00 0.00 0.00 1.90
83 84 4.390129 TTTAGGCCCTGTTTGGTTCATA 57.610 40.909 0.00 0.00 0.00 2.15
85 86 2.757894 TTTAGGCCCTGTTTGGTTCA 57.242 45.000 0.00 0.00 0.00 3.18
86 87 5.932619 ATATTTTAGGCCCTGTTTGGTTC 57.067 39.130 0.00 0.00 0.00 3.62
87 88 6.737608 TCTATATTTTAGGCCCTGTTTGGTT 58.262 36.000 0.00 0.00 0.00 3.67
88 89 6.159751 TCTCTATATTTTAGGCCCTGTTTGGT 59.840 38.462 0.00 0.00 0.00 3.67
89 90 6.601332 TCTCTATATTTTAGGCCCTGTTTGG 58.399 40.000 0.00 0.00 0.00 3.28
90 91 7.993183 TCTTCTCTATATTTTAGGCCCTGTTTG 59.007 37.037 0.00 0.00 0.00 2.93
91 92 7.993758 GTCTTCTCTATATTTTAGGCCCTGTTT 59.006 37.037 0.00 0.00 0.00 2.83
93 94 6.847036 AGTCTTCTCTATATTTTAGGCCCTGT 59.153 38.462 0.00 0.00 0.00 4.00
94 95 7.158021 CAGTCTTCTCTATATTTTAGGCCCTG 58.842 42.308 0.00 0.00 0.00 4.45
95 96 6.271159 CCAGTCTTCTCTATATTTTAGGCCCT 59.729 42.308 0.00 0.00 0.00 5.19
96 97 6.043358 ACCAGTCTTCTCTATATTTTAGGCCC 59.957 42.308 0.00 0.00 0.00 5.80
97 98 7.068686 ACCAGTCTTCTCTATATTTTAGGCC 57.931 40.000 0.00 0.00 0.00 5.19
98 99 9.646427 CATACCAGTCTTCTCTATATTTTAGGC 57.354 37.037 0.00 0.00 0.00 3.93
99 100 9.646427 GCATACCAGTCTTCTCTATATTTTAGG 57.354 37.037 0.00 0.00 0.00 2.69
104 105 9.540538 ACTATGCATACCAGTCTTCTCTATATT 57.459 33.333 1.16 0.00 0.00 1.28
107 108 9.184523 GATACTATGCATACCAGTCTTCTCTAT 57.815 37.037 1.16 0.00 0.00 1.98
108 109 8.387039 AGATACTATGCATACCAGTCTTCTCTA 58.613 37.037 1.16 0.00 0.00 2.43
109 110 7.176515 CAGATACTATGCATACCAGTCTTCTCT 59.823 40.741 1.16 0.56 0.00 3.10
110 111 7.312154 CAGATACTATGCATACCAGTCTTCTC 58.688 42.308 1.16 0.00 0.00 2.87
111 112 6.210385 CCAGATACTATGCATACCAGTCTTCT 59.790 42.308 1.16 5.22 0.00 2.85
112 113 6.393990 CCAGATACTATGCATACCAGTCTTC 58.606 44.000 1.16 3.09 0.00 2.87
113 114 5.279708 GCCAGATACTATGCATACCAGTCTT 60.280 44.000 1.16 0.00 0.00 3.01
114 115 4.221703 GCCAGATACTATGCATACCAGTCT 59.778 45.833 1.16 1.75 0.00 3.24
115 116 4.499183 GCCAGATACTATGCATACCAGTC 58.501 47.826 1.16 0.00 0.00 3.51
117 118 3.193479 TCGCCAGATACTATGCATACCAG 59.807 47.826 1.16 0.00 0.00 4.00
118 119 3.161866 TCGCCAGATACTATGCATACCA 58.838 45.455 1.16 0.00 0.00 3.25
120 121 3.614616 GCTTCGCCAGATACTATGCATAC 59.385 47.826 1.16 0.00 0.00 2.39
121 122 3.511540 AGCTTCGCCAGATACTATGCATA 59.488 43.478 6.20 6.20 0.00 3.14
122 123 2.301296 AGCTTCGCCAGATACTATGCAT 59.699 45.455 3.79 3.79 0.00 3.96
123 124 1.688735 AGCTTCGCCAGATACTATGCA 59.311 47.619 0.00 0.00 0.00 3.96
124 125 2.029470 AGAGCTTCGCCAGATACTATGC 60.029 50.000 0.00 0.00 0.00 3.14
125 126 3.932545 AGAGCTTCGCCAGATACTATG 57.067 47.619 0.00 0.00 0.00 2.23
126 127 3.442273 GCTAGAGCTTCGCCAGATACTAT 59.558 47.826 0.00 0.00 38.21 2.12
127 128 2.814919 GCTAGAGCTTCGCCAGATACTA 59.185 50.000 0.00 0.00 38.21 1.82
128 129 1.611491 GCTAGAGCTTCGCCAGATACT 59.389 52.381 0.00 0.00 38.21 2.12
131 132 0.826715 TTGCTAGAGCTTCGCCAGAT 59.173 50.000 2.72 0.00 42.66 2.90
132 133 0.826715 ATTGCTAGAGCTTCGCCAGA 59.173 50.000 2.72 0.00 42.66 3.86
133 134 1.661341 AATTGCTAGAGCTTCGCCAG 58.339 50.000 2.72 0.00 42.66 4.85
134 135 1.739466 CAAATTGCTAGAGCTTCGCCA 59.261 47.619 2.72 0.00 42.66 5.69
137 138 4.935885 AACTCAAATTGCTAGAGCTTCG 57.064 40.909 2.72 0.00 42.66 3.79
138 139 7.095017 ACACTAAACTCAAATTGCTAGAGCTTC 60.095 37.037 2.72 0.00 42.66 3.86
139 140 6.712547 ACACTAAACTCAAATTGCTAGAGCTT 59.287 34.615 2.72 0.00 42.66 3.74
140 141 6.234177 ACACTAAACTCAAATTGCTAGAGCT 58.766 36.000 2.72 0.00 42.66 4.09
141 142 6.487689 ACACTAAACTCAAATTGCTAGAGC 57.512 37.500 0.00 0.00 42.50 4.09
142 143 8.035394 TCCTACACTAAACTCAAATTGCTAGAG 58.965 37.037 0.00 0.00 35.56 2.43
144 145 8.723942 ATCCTACACTAAACTCAAATTGCTAG 57.276 34.615 0.00 0.00 0.00 3.42
145 146 9.817809 CTATCCTACACTAAACTCAAATTGCTA 57.182 33.333 0.00 0.00 0.00 3.49
146 147 8.322091 ACTATCCTACACTAAACTCAAATTGCT 58.678 33.333 0.00 0.00 0.00 3.91
147 148 8.494016 ACTATCCTACACTAAACTCAAATTGC 57.506 34.615 0.00 0.00 0.00 3.56
151 152 9.841295 ACAAAACTATCCTACACTAAACTCAAA 57.159 29.630 0.00 0.00 0.00 2.69
152 153 9.268268 CACAAAACTATCCTACACTAAACTCAA 57.732 33.333 0.00 0.00 0.00 3.02
153 154 7.386848 GCACAAAACTATCCTACACTAAACTCA 59.613 37.037 0.00 0.00 0.00 3.41
154 155 7.411588 CGCACAAAACTATCCTACACTAAACTC 60.412 40.741 0.00 0.00 0.00 3.01
155 156 6.367969 CGCACAAAACTATCCTACACTAAACT 59.632 38.462 0.00 0.00 0.00 2.66
156 157 6.401796 CCGCACAAAACTATCCTACACTAAAC 60.402 42.308 0.00 0.00 0.00 2.01
157 158 5.640357 CCGCACAAAACTATCCTACACTAAA 59.360 40.000 0.00 0.00 0.00 1.85
158 159 5.172934 CCGCACAAAACTATCCTACACTAA 58.827 41.667 0.00 0.00 0.00 2.24
159 160 4.382254 CCCGCACAAAACTATCCTACACTA 60.382 45.833 0.00 0.00 0.00 2.74
160 161 3.596214 CCGCACAAAACTATCCTACACT 58.404 45.455 0.00 0.00 0.00 3.55
161 162 2.676342 CCCGCACAAAACTATCCTACAC 59.324 50.000 0.00 0.00 0.00 2.90
162 163 2.303600 ACCCGCACAAAACTATCCTACA 59.696 45.455 0.00 0.00 0.00 2.74
163 164 2.981898 ACCCGCACAAAACTATCCTAC 58.018 47.619 0.00 0.00 0.00 3.18
164 165 3.706600 AACCCGCACAAAACTATCCTA 57.293 42.857 0.00 0.00 0.00 2.94
165 166 2.579410 AACCCGCACAAAACTATCCT 57.421 45.000 0.00 0.00 0.00 3.24
166 167 2.554893 TGAAACCCGCACAAAACTATCC 59.445 45.455 0.00 0.00 0.00 2.59
167 168 3.561503 GTGAAACCCGCACAAAACTATC 58.438 45.455 0.00 0.00 36.31 2.08
168 169 2.031508 CGTGAAACCCGCACAAAACTAT 60.032 45.455 0.00 0.00 36.06 2.12
169 170 1.331138 CGTGAAACCCGCACAAAACTA 59.669 47.619 0.00 0.00 36.06 2.24
170 171 0.099791 CGTGAAACCCGCACAAAACT 59.900 50.000 0.00 0.00 36.06 2.66
171 172 0.868177 CCGTGAAACCCGCACAAAAC 60.868 55.000 0.00 0.00 36.06 2.43
172 173 1.433879 CCGTGAAACCCGCACAAAA 59.566 52.632 0.00 0.00 36.06 2.44
173 174 2.482333 CCCGTGAAACCCGCACAAA 61.482 57.895 0.00 0.00 36.06 2.83
174 175 2.902846 CCCGTGAAACCCGCACAA 60.903 61.111 0.00 0.00 36.06 3.33
175 176 3.862991 TCCCGTGAAACCCGCACA 61.863 61.111 0.00 0.00 36.06 4.57
176 177 3.351416 GTCCCGTGAAACCCGCAC 61.351 66.667 0.00 0.00 0.00 5.34
177 178 3.524648 GAGTCCCGTGAAACCCGCA 62.525 63.158 0.00 0.00 0.00 5.69
178 179 2.741211 GAGTCCCGTGAAACCCGC 60.741 66.667 0.00 0.00 0.00 6.13
179 180 1.666872 GTGAGTCCCGTGAAACCCG 60.667 63.158 0.00 0.00 0.00 5.28
180 181 1.302271 GGTGAGTCCCGTGAAACCC 60.302 63.158 0.00 0.00 0.00 4.11
181 182 4.373771 GGTGAGTCCCGTGAAACC 57.626 61.111 0.00 0.00 0.00 3.27
190 191 0.531200 CTCCACTTACGGGTGAGTCC 59.469 60.000 6.94 0.00 39.34 3.85
191 192 0.108756 GCTCCACTTACGGGTGAGTC 60.109 60.000 6.94 0.00 39.34 3.36
192 193 0.830444 TGCTCCACTTACGGGTGAGT 60.830 55.000 6.94 0.00 39.34 3.41
193 194 0.320374 TTGCTCCACTTACGGGTGAG 59.680 55.000 6.94 0.00 39.34 3.51
194 195 0.981183 ATTGCTCCACTTACGGGTGA 59.019 50.000 6.94 0.00 39.34 4.02
195 196 1.821216 AATTGCTCCACTTACGGGTG 58.179 50.000 0.00 0.00 37.00 4.61
196 197 2.159382 CAAATTGCTCCACTTACGGGT 58.841 47.619 0.00 0.00 0.00 5.28
197 198 1.472480 CCAAATTGCTCCACTTACGGG 59.528 52.381 0.00 0.00 0.00 5.28
198 199 2.159382 ACCAAATTGCTCCACTTACGG 58.841 47.619 0.00 0.00 0.00 4.02
199 200 3.502211 AGAACCAAATTGCTCCACTTACG 59.498 43.478 0.00 0.00 0.00 3.18
200 201 4.082733 GGAGAACCAAATTGCTCCACTTAC 60.083 45.833 11.57 0.00 44.91 2.34
201 202 4.079253 GGAGAACCAAATTGCTCCACTTA 58.921 43.478 11.57 0.00 44.91 2.24
202 203 2.893489 GGAGAACCAAATTGCTCCACTT 59.107 45.455 11.57 0.00 44.91 3.16
203 204 2.519013 GGAGAACCAAATTGCTCCACT 58.481 47.619 11.57 0.00 44.91 4.00
204 205 1.200020 CGGAGAACCAAATTGCTCCAC 59.800 52.381 15.17 1.45 45.65 4.02
205 206 1.073125 TCGGAGAACCAAATTGCTCCA 59.927 47.619 15.17 3.80 45.65 3.86
206 207 1.740025 CTCGGAGAACCAAATTGCTCC 59.260 52.381 0.00 7.73 42.71 4.70
207 208 1.131315 GCTCGGAGAACCAAATTGCTC 59.869 52.381 9.69 0.00 34.09 4.26
208 209 1.168714 GCTCGGAGAACCAAATTGCT 58.831 50.000 9.69 0.00 34.09 3.91
209 210 0.881118 TGCTCGGAGAACCAAATTGC 59.119 50.000 9.69 0.00 34.09 3.56
210 211 3.504863 CATTGCTCGGAGAACCAAATTG 58.495 45.455 9.69 0.00 34.09 2.32
211 212 2.094545 GCATTGCTCGGAGAACCAAATT 60.095 45.455 9.69 0.00 34.09 1.82
212 213 1.474077 GCATTGCTCGGAGAACCAAAT 59.526 47.619 9.69 0.00 34.09 2.32
213 214 0.881118 GCATTGCTCGGAGAACCAAA 59.119 50.000 9.69 0.00 34.09 3.28
214 215 0.036732 AGCATTGCTCGGAGAACCAA 59.963 50.000 9.69 4.12 30.62 3.67
215 216 0.901827 TAGCATTGCTCGGAGAACCA 59.098 50.000 15.81 0.00 40.44 3.67
216 217 1.291132 GTAGCATTGCTCGGAGAACC 58.709 55.000 15.81 0.00 40.44 3.62
217 218 1.661112 GTGTAGCATTGCTCGGAGAAC 59.339 52.381 15.81 7.23 40.44 3.01
218 219 1.550524 AGTGTAGCATTGCTCGGAGAA 59.449 47.619 15.81 0.00 40.44 2.87
219 220 1.186200 AGTGTAGCATTGCTCGGAGA 58.814 50.000 15.81 0.00 40.44 3.71
220 221 2.015736 AAGTGTAGCATTGCTCGGAG 57.984 50.000 15.81 0.00 40.44 4.63
221 222 2.232696 TGTAAGTGTAGCATTGCTCGGA 59.767 45.455 15.81 0.00 40.44 4.55
222 223 2.604914 CTGTAAGTGTAGCATTGCTCGG 59.395 50.000 15.81 0.00 40.44 4.63
223 224 2.604914 CCTGTAAGTGTAGCATTGCTCG 59.395 50.000 15.81 0.00 40.44 5.03
224 225 3.600388 ACCTGTAAGTGTAGCATTGCTC 58.400 45.455 15.81 7.72 40.44 4.26
225 226 3.703001 ACCTGTAAGTGTAGCATTGCT 57.297 42.857 16.63 16.63 43.41 3.91
226 227 4.755411 TCTACCTGTAAGTGTAGCATTGC 58.245 43.478 0.00 0.00 37.52 3.56
227 228 7.849804 AAATCTACCTGTAAGTGTAGCATTG 57.150 36.000 0.00 0.00 37.52 2.82
228 229 8.100791 TGAAAATCTACCTGTAAGTGTAGCATT 58.899 33.333 0.00 0.00 37.52 3.56
229 230 7.620880 TGAAAATCTACCTGTAAGTGTAGCAT 58.379 34.615 0.00 0.00 37.52 3.79
230 231 6.999950 TGAAAATCTACCTGTAAGTGTAGCA 58.000 36.000 0.00 0.00 37.52 3.49
231 232 7.011482 CCATGAAAATCTACCTGTAAGTGTAGC 59.989 40.741 0.00 0.00 37.52 3.58
232 233 8.258007 TCCATGAAAATCTACCTGTAAGTGTAG 58.742 37.037 0.00 0.00 38.36 2.74
233 234 8.141298 TCCATGAAAATCTACCTGTAAGTGTA 57.859 34.615 0.00 0.00 0.00 2.90
234 235 7.016153 TCCATGAAAATCTACCTGTAAGTGT 57.984 36.000 0.00 0.00 0.00 3.55
235 236 7.921786 TTCCATGAAAATCTACCTGTAAGTG 57.078 36.000 0.00 0.00 0.00 3.16
239 240 9.573166 CCATTATTCCATGAAAATCTACCTGTA 57.427 33.333 0.00 0.00 0.00 2.74
240 241 8.061304 ACCATTATTCCATGAAAATCTACCTGT 58.939 33.333 0.00 0.00 0.00 4.00
241 242 8.469309 ACCATTATTCCATGAAAATCTACCTG 57.531 34.615 0.00 0.00 0.00 4.00
244 245 9.878599 CGTAACCATTATTCCATGAAAATCTAC 57.121 33.333 0.00 0.00 0.00 2.59
245 246 9.062524 CCGTAACCATTATTCCATGAAAATCTA 57.937 33.333 0.00 0.00 0.00 1.98
246 247 7.777910 TCCGTAACCATTATTCCATGAAAATCT 59.222 33.333 0.00 0.00 0.00 2.40
247 248 7.860872 GTCCGTAACCATTATTCCATGAAAATC 59.139 37.037 0.00 0.00 0.00 2.17
248 249 7.340743 TGTCCGTAACCATTATTCCATGAAAAT 59.659 33.333 0.00 0.00 0.00 1.82
249 250 6.659668 TGTCCGTAACCATTATTCCATGAAAA 59.340 34.615 0.00 0.00 0.00 2.29
250 251 6.181190 TGTCCGTAACCATTATTCCATGAAA 58.819 36.000 0.00 0.00 0.00 2.69
251 252 5.746284 TGTCCGTAACCATTATTCCATGAA 58.254 37.500 0.00 0.00 0.00 2.57
252 253 5.360649 TGTCCGTAACCATTATTCCATGA 57.639 39.130 0.00 0.00 0.00 3.07
253 254 5.562696 GCATGTCCGTAACCATTATTCCATG 60.563 44.000 0.00 0.00 0.00 3.66
254 255 4.518970 GCATGTCCGTAACCATTATTCCAT 59.481 41.667 0.00 0.00 0.00 3.41
255 256 3.880490 GCATGTCCGTAACCATTATTCCA 59.120 43.478 0.00 0.00 0.00 3.53
256 257 3.880490 TGCATGTCCGTAACCATTATTCC 59.120 43.478 0.00 0.00 0.00 3.01
257 258 5.451908 CATGCATGTCCGTAACCATTATTC 58.548 41.667 18.91 0.00 0.00 1.75
258 259 4.278170 CCATGCATGTCCGTAACCATTATT 59.722 41.667 24.58 0.00 0.00 1.40
259 260 3.820467 CCATGCATGTCCGTAACCATTAT 59.180 43.478 24.58 0.00 0.00 1.28
260 261 3.210227 CCATGCATGTCCGTAACCATTA 58.790 45.455 24.58 0.00 0.00 1.90
261 262 2.023673 CCATGCATGTCCGTAACCATT 58.976 47.619 24.58 0.00 0.00 3.16
262 263 1.679139 CCATGCATGTCCGTAACCAT 58.321 50.000 24.58 0.00 0.00 3.55
263 264 1.029408 GCCATGCATGTCCGTAACCA 61.029 55.000 24.58 0.00 0.00 3.67
264 265 1.029408 TGCCATGCATGTCCGTAACC 61.029 55.000 24.58 3.95 31.71 2.85
265 266 2.476772 TGCCATGCATGTCCGTAAC 58.523 52.632 24.58 6.20 31.71 2.50
275 276 2.809696 CACGATCTAATGATGCCATGCA 59.190 45.455 0.00 0.00 44.86 3.96
276 277 2.161012 CCACGATCTAATGATGCCATGC 59.839 50.000 0.00 0.00 32.36 4.06
277 278 2.745821 CCCACGATCTAATGATGCCATG 59.254 50.000 0.00 0.00 32.36 3.66
278 279 2.639347 TCCCACGATCTAATGATGCCAT 59.361 45.455 0.00 0.00 32.19 4.40
279 280 2.037641 CTCCCACGATCTAATGATGCCA 59.962 50.000 0.00 0.00 32.19 4.92
280 281 2.613977 CCTCCCACGATCTAATGATGCC 60.614 54.545 0.00 0.00 32.19 4.40
281 282 2.300152 TCCTCCCACGATCTAATGATGC 59.700 50.000 0.00 0.00 32.19 3.91
282 283 3.576118 ACTCCTCCCACGATCTAATGATG 59.424 47.826 0.00 0.00 32.19 3.07
283 284 3.576118 CACTCCTCCCACGATCTAATGAT 59.424 47.826 0.00 0.00 35.26 2.45
284 285 2.959030 CACTCCTCCCACGATCTAATGA 59.041 50.000 0.00 0.00 0.00 2.57
285 286 2.546795 GCACTCCTCCCACGATCTAATG 60.547 54.545 0.00 0.00 0.00 1.90
286 287 1.689273 GCACTCCTCCCACGATCTAAT 59.311 52.381 0.00 0.00 0.00 1.73
287 288 1.112113 GCACTCCTCCCACGATCTAA 58.888 55.000 0.00 0.00 0.00 2.10
288 289 0.755698 GGCACTCCTCCCACGATCTA 60.756 60.000 0.00 0.00 0.00 1.98
289 290 2.060980 GGCACTCCTCCCACGATCT 61.061 63.158 0.00 0.00 0.00 2.75
290 291 1.690219 ATGGCACTCCTCCCACGATC 61.690 60.000 0.00 0.00 33.17 3.69
291 292 0.398522 TATGGCACTCCTCCCACGAT 60.399 55.000 0.00 0.00 33.17 3.73
292 293 1.001120 TATGGCACTCCTCCCACGA 59.999 57.895 0.00 0.00 33.17 4.35
293 294 1.144057 GTATGGCACTCCTCCCACG 59.856 63.158 0.00 0.00 33.17 4.94
294 295 1.527370 GGTATGGCACTCCTCCCAC 59.473 63.158 0.00 0.00 33.17 4.61
295 296 1.692749 GGGTATGGCACTCCTCCCA 60.693 63.158 9.17 0.00 37.91 4.37
296 297 2.452937 GGGGTATGGCACTCCTCCC 61.453 68.421 9.17 7.50 45.49 4.30
297 298 3.241520 GGGGTATGGCACTCCTCC 58.758 66.667 9.17 5.89 45.49 4.30
301 302 1.282157 AGTTTCAGGGGTATGGCACTC 59.718 52.381 0.00 0.00 0.00 3.51
302 303 1.004745 CAGTTTCAGGGGTATGGCACT 59.995 52.381 0.00 0.00 0.00 4.40
303 304 1.004277 TCAGTTTCAGGGGTATGGCAC 59.996 52.381 0.00 0.00 0.00 5.01
304 305 1.281867 CTCAGTTTCAGGGGTATGGCA 59.718 52.381 0.00 0.00 0.00 4.92
305 306 1.408822 CCTCAGTTTCAGGGGTATGGC 60.409 57.143 0.00 0.00 0.00 4.40
306 307 1.212935 CCCTCAGTTTCAGGGGTATGG 59.787 57.143 0.00 0.00 46.54 2.74
307 308 2.717639 CCCTCAGTTTCAGGGGTATG 57.282 55.000 0.00 0.00 46.54 2.39
313 314 2.045926 CGCCCCCTCAGTTTCAGG 60.046 66.667 0.00 0.00 0.00 3.86
314 315 2.045926 CCGCCCCCTCAGTTTCAG 60.046 66.667 0.00 0.00 0.00 3.02
315 316 3.646715 CCCGCCCCCTCAGTTTCA 61.647 66.667 0.00 0.00 0.00 2.69
316 317 4.426313 CCCCGCCCCCTCAGTTTC 62.426 72.222 0.00 0.00 0.00 2.78
317 318 4.995058 TCCCCGCCCCCTCAGTTT 62.995 66.667 0.00 0.00 0.00 2.66
318 319 4.760220 ATCCCCGCCCCCTCAGTT 62.760 66.667 0.00 0.00 0.00 3.16
323 324 3.436056 TAATCCATCCCCGCCCCCT 62.436 63.158 0.00 0.00 0.00 4.79
324 325 2.856988 TAATCCATCCCCGCCCCC 60.857 66.667 0.00 0.00 0.00 5.40
325 326 1.423794 TTCTAATCCATCCCCGCCCC 61.424 60.000 0.00 0.00 0.00 5.80
326 327 0.036875 CTTCTAATCCATCCCCGCCC 59.963 60.000 0.00 0.00 0.00 6.13
327 328 0.606673 GCTTCTAATCCATCCCCGCC 60.607 60.000 0.00 0.00 0.00 6.13
328 329 0.398318 AGCTTCTAATCCATCCCCGC 59.602 55.000 0.00 0.00 0.00 6.13
329 330 1.879796 GCAGCTTCTAATCCATCCCCG 60.880 57.143 0.00 0.00 0.00 5.73
330 331 1.546548 GGCAGCTTCTAATCCATCCCC 60.547 57.143 0.00 0.00 0.00 4.81
331 332 1.143684 TGGCAGCTTCTAATCCATCCC 59.856 52.381 0.00 0.00 0.00 3.85
332 333 2.225467 GTGGCAGCTTCTAATCCATCC 58.775 52.381 0.00 0.00 0.00 3.51
333 334 2.923121 TGTGGCAGCTTCTAATCCATC 58.077 47.619 0.00 0.00 0.00 3.51
334 335 3.484407 GATGTGGCAGCTTCTAATCCAT 58.516 45.455 0.00 0.00 0.00 3.41
335 336 2.742856 CGATGTGGCAGCTTCTAATCCA 60.743 50.000 0.00 0.00 0.00 3.41
336 337 1.869767 CGATGTGGCAGCTTCTAATCC 59.130 52.381 0.00 0.00 0.00 3.01
337 338 1.869767 CCGATGTGGCAGCTTCTAATC 59.130 52.381 0.00 0.00 0.00 1.75
338 339 1.210478 ACCGATGTGGCAGCTTCTAAT 59.790 47.619 0.00 0.00 43.94 1.73
339 340 0.613260 ACCGATGTGGCAGCTTCTAA 59.387 50.000 0.00 0.00 43.94 2.10
340 341 0.175760 GACCGATGTGGCAGCTTCTA 59.824 55.000 0.00 0.00 43.94 2.10
341 342 1.078848 GACCGATGTGGCAGCTTCT 60.079 57.895 0.00 0.00 43.94 2.85
342 343 2.109126 GGACCGATGTGGCAGCTTC 61.109 63.158 0.00 0.00 43.94 3.86
343 344 2.045926 GGACCGATGTGGCAGCTT 60.046 61.111 0.00 0.00 43.94 3.74
344 345 4.457496 CGGACCGATGTGGCAGCT 62.457 66.667 8.64 0.00 43.94 4.24
345 346 3.365291 TACGGACCGATGTGGCAGC 62.365 63.158 23.38 0.00 43.94 5.25
346 347 1.226974 CTACGGACCGATGTGGCAG 60.227 63.158 23.38 1.86 43.94 4.85
347 348 2.717044 CCTACGGACCGATGTGGCA 61.717 63.158 23.38 0.00 43.94 4.92
348 349 1.745320 ATCCTACGGACCGATGTGGC 61.745 60.000 23.38 0.00 43.94 5.01
349 350 1.540267 CTATCCTACGGACCGATGTGG 59.460 57.143 23.38 15.67 46.41 4.17
350 351 1.068472 GCTATCCTACGGACCGATGTG 60.068 57.143 23.38 6.01 32.98 3.21
351 352 1.202903 AGCTATCCTACGGACCGATGT 60.203 52.381 23.38 0.00 32.98 3.06
352 353 1.469308 GAGCTATCCTACGGACCGATG 59.531 57.143 23.38 12.21 32.98 3.84
353 354 1.613785 GGAGCTATCCTACGGACCGAT 60.614 57.143 23.38 5.91 42.94 4.18
354 355 0.250640 GGAGCTATCCTACGGACCGA 60.251 60.000 23.38 3.17 42.94 4.69
355 356 1.242665 GGGAGCTATCCTACGGACCG 61.243 65.000 13.61 13.61 45.85 4.79
356 357 0.178970 TGGGAGCTATCCTACGGACC 60.179 60.000 7.06 0.00 45.85 4.46
357 358 1.546476 CATGGGAGCTATCCTACGGAC 59.454 57.143 7.06 0.00 45.85 4.79
358 359 1.427753 TCATGGGAGCTATCCTACGGA 59.572 52.381 7.06 0.00 45.85 4.69
359 360 1.924731 TCATGGGAGCTATCCTACGG 58.075 55.000 7.06 0.00 45.85 4.02
360 361 3.322254 AGTTTCATGGGAGCTATCCTACG 59.678 47.826 7.06 0.00 45.85 3.51
361 362 4.345257 TGAGTTTCATGGGAGCTATCCTAC 59.655 45.833 7.06 0.00 45.85 3.18
362 363 4.345257 GTGAGTTTCATGGGAGCTATCCTA 59.655 45.833 7.06 0.00 45.85 2.94
363 364 3.135530 GTGAGTTTCATGGGAGCTATCCT 59.864 47.826 7.06 0.00 45.85 3.24
364 365 3.471680 GTGAGTTTCATGGGAGCTATCC 58.528 50.000 0.00 0.00 45.85 2.59
365 366 3.471680 GGTGAGTTTCATGGGAGCTATC 58.528 50.000 0.00 0.00 0.00 2.08
366 367 2.173569 GGGTGAGTTTCATGGGAGCTAT 59.826 50.000 0.00 0.00 0.00 2.97
367 368 1.559682 GGGTGAGTTTCATGGGAGCTA 59.440 52.381 0.00 0.00 0.00 3.32
368 369 0.329596 GGGTGAGTTTCATGGGAGCT 59.670 55.000 0.00 0.00 0.00 4.09
369 370 1.026718 CGGGTGAGTTTCATGGGAGC 61.027 60.000 0.00 0.00 0.00 4.70
370 371 0.324943 ACGGGTGAGTTTCATGGGAG 59.675 55.000 0.00 0.00 0.00 4.30
371 372 1.553248 CTACGGGTGAGTTTCATGGGA 59.447 52.381 0.00 0.00 0.00 4.37
372 373 1.406887 CCTACGGGTGAGTTTCATGGG 60.407 57.143 0.00 0.00 0.00 4.00
373 374 1.553248 TCCTACGGGTGAGTTTCATGG 59.447 52.381 0.00 0.00 0.00 3.66
374 375 3.198068 CATCCTACGGGTGAGTTTCATG 58.802 50.000 0.00 0.00 0.00 3.07
375 376 2.420129 GCATCCTACGGGTGAGTTTCAT 60.420 50.000 0.00 0.00 0.00 2.57
376 377 1.066430 GCATCCTACGGGTGAGTTTCA 60.066 52.381 0.00 0.00 0.00 2.69
377 378 1.066430 TGCATCCTACGGGTGAGTTTC 60.066 52.381 0.00 0.00 0.00 2.78
378 379 0.981183 TGCATCCTACGGGTGAGTTT 59.019 50.000 0.00 0.00 0.00 2.66
379 380 1.139058 GATGCATCCTACGGGTGAGTT 59.861 52.381 16.23 0.00 0.00 3.01
380 381 0.753262 GATGCATCCTACGGGTGAGT 59.247 55.000 16.23 0.00 0.00 3.41
381 382 0.752658 TGATGCATCCTACGGGTGAG 59.247 55.000 23.67 0.00 0.00 3.51
382 383 1.070601 CATGATGCATCCTACGGGTGA 59.929 52.381 23.67 2.03 0.00 4.02
383 384 1.516161 CATGATGCATCCTACGGGTG 58.484 55.000 23.67 7.48 0.00 4.61
384 385 0.250467 GCATGATGCATCCTACGGGT 60.250 55.000 23.67 0.00 44.26 5.28
385 386 2.548178 GCATGATGCATCCTACGGG 58.452 57.895 23.67 7.90 44.26 5.28
395 396 0.308684 CGGGTACACATGCATGATGC 59.691 55.000 32.75 21.28 45.29 3.91
396 397 1.599071 GACGGGTACACATGCATGATG 59.401 52.381 32.75 25.57 38.15 3.07
397 398 1.209261 TGACGGGTACACATGCATGAT 59.791 47.619 32.75 21.18 0.00 2.45
398 399 0.610687 TGACGGGTACACATGCATGA 59.389 50.000 32.75 8.19 0.00 3.07
399 400 0.726827 GTGACGGGTACACATGCATG 59.273 55.000 25.09 25.09 38.05 4.06
400 401 0.323302 TGTGACGGGTACACATGCAT 59.677 50.000 0.00 0.00 42.20 3.96
401 402 1.749033 TGTGACGGGTACACATGCA 59.251 52.632 0.00 0.00 42.20 3.96
402 403 4.685447 TGTGACGGGTACACATGC 57.315 55.556 0.00 0.00 42.20 4.06
406 407 2.344872 GGGGTGTGACGGGTACAC 59.655 66.667 9.68 9.68 45.82 2.90
407 408 2.091640 TAGGGGGTGTGACGGGTACA 62.092 60.000 0.00 0.00 0.00 2.90
408 409 0.904394 TTAGGGGGTGTGACGGGTAC 60.904 60.000 0.00 0.00 0.00 3.34
409 410 0.615544 CTTAGGGGGTGTGACGGGTA 60.616 60.000 0.00 0.00 0.00 3.69
410 411 1.916777 CTTAGGGGGTGTGACGGGT 60.917 63.158 0.00 0.00 0.00 5.28
411 412 2.666098 CCTTAGGGGGTGTGACGGG 61.666 68.421 0.00 0.00 0.00 5.28
412 413 1.916777 ACCTTAGGGGGTGTGACGG 60.917 63.158 2.32 0.00 38.30 4.79
413 414 3.801620 ACCTTAGGGGGTGTGACG 58.198 61.111 2.32 0.00 38.30 4.35
419 420 4.171234 CTGATCATATCACCTTAGGGGGT 58.829 47.826 0.00 0.00 40.73 4.95
420 421 4.171234 ACTGATCATATCACCTTAGGGGG 58.829 47.826 0.00 0.00 40.03 5.40
421 422 6.935240 TTACTGATCATATCACCTTAGGGG 57.065 41.667 2.32 0.00 41.89 4.79
422 423 8.138928 TGATTACTGATCATATCACCTTAGGG 57.861 38.462 2.32 0.00 39.83 3.53
423 424 9.429359 GTTGATTACTGATCATATCACCTTAGG 57.571 37.037 12.32 0.00 44.01 2.69
424 425 9.987272 TGTTGATTACTGATCATATCACCTTAG 57.013 33.333 12.32 0.00 44.01 2.18
426 427 9.113838 GTTGTTGATTACTGATCATATCACCTT 57.886 33.333 12.32 0.00 44.01 3.50
427 428 8.267183 TGTTGTTGATTACTGATCATATCACCT 58.733 33.333 12.32 0.00 44.01 4.00
428 429 8.437360 TGTTGTTGATTACTGATCATATCACC 57.563 34.615 12.32 8.25 44.01 4.02
430 431 9.835389 TGATGTTGTTGATTACTGATCATATCA 57.165 29.630 0.00 3.64 44.01 2.15
432 433 9.617523 TGTGATGTTGTTGATTACTGATCATAT 57.382 29.630 0.00 0.00 44.01 1.78
433 434 9.447157 TTGTGATGTTGTTGATTACTGATCATA 57.553 29.630 0.00 0.00 44.01 2.15
434 435 7.926674 TGTGATGTTGTTGATTACTGATCAT 57.073 32.000 0.00 0.00 44.01 2.45
435 436 7.445096 ACTTGTGATGTTGTTGATTACTGATCA 59.555 33.333 0.00 0.00 42.95 2.92
436 437 7.747799 CACTTGTGATGTTGTTGATTACTGATC 59.252 37.037 0.00 0.00 35.21 2.92
437 438 7.445096 TCACTTGTGATGTTGTTGATTACTGAT 59.555 33.333 0.00 0.00 0.00 2.90
438 439 6.765512 TCACTTGTGATGTTGTTGATTACTGA 59.234 34.615 0.00 0.00 0.00 3.41
439 440 6.852853 GTCACTTGTGATGTTGTTGATTACTG 59.147 38.462 6.74 0.00 0.00 2.74
440 441 6.542005 TGTCACTTGTGATGTTGTTGATTACT 59.458 34.615 6.74 0.00 0.00 2.24
441 442 6.632834 GTGTCACTTGTGATGTTGTTGATTAC 59.367 38.462 6.74 0.00 0.00 1.89
493 494 1.202927 ACAAGTCAGGGGATGGTGTTG 60.203 52.381 0.00 0.00 0.00 3.33
500 501 1.272147 GGCTTTGACAAGTCAGGGGAT 60.272 52.381 2.87 0.00 41.13 3.85
618 622 6.127647 GCATATTCAATCCTCAACTTGTTGGA 60.128 38.462 12.75 4.65 0.00 3.53
647 651 0.395586 AAGCAGGAAACACTGTGGCA 60.396 50.000 13.09 0.00 40.59 4.92
648 652 0.031178 CAAGCAGGAAACACTGTGGC 59.969 55.000 13.09 4.60 40.59 5.01
650 654 1.392589 ACCAAGCAGGAAACACTGTG 58.607 50.000 6.19 6.19 41.22 3.66
651 655 2.024414 GAACCAAGCAGGAAACACTGT 58.976 47.619 1.83 0.00 41.22 3.55
652 656 2.023673 TGAACCAAGCAGGAAACACTG 58.976 47.619 1.83 0.00 41.22 3.66
653 657 2.435372 TGAACCAAGCAGGAAACACT 57.565 45.000 1.83 0.00 41.22 3.55
654 658 2.887152 AGATGAACCAAGCAGGAAACAC 59.113 45.455 1.83 0.00 41.22 3.32
657 661 2.517959 CCAGATGAACCAAGCAGGAAA 58.482 47.619 1.83 0.00 41.22 3.13
658 662 1.887956 GCCAGATGAACCAAGCAGGAA 60.888 52.381 1.83 0.00 41.22 3.36
659 663 0.322816 GCCAGATGAACCAAGCAGGA 60.323 55.000 1.83 0.00 41.22 3.86
892 907 3.659850 CATGCATGCAACCTCCATG 57.340 52.632 26.68 12.78 42.23 3.66
929 944 2.186826 GCTTGGAGGTGTGCGTGTT 61.187 57.895 0.00 0.00 0.00 3.32
969 985 3.097614 GCTGGGTCTCTAAGTAGGACAA 58.902 50.000 0.00 0.00 0.00 3.18
970 986 2.312140 AGCTGGGTCTCTAAGTAGGACA 59.688 50.000 0.00 0.00 0.00 4.02
1033 1080 2.049156 CACCAGAGCTGTCGCGAA 60.049 61.111 12.06 0.00 42.32 4.70
1668 1715 2.926242 GTGGGGTCGTCCTTGGGA 60.926 66.667 0.00 0.00 35.33 4.37
2196 2252 7.147976 AGGCAGATATTTCAACAAAACAACTC 58.852 34.615 0.00 0.00 0.00 3.01
2199 2255 8.584157 ACATAGGCAGATATTTCAACAAAACAA 58.416 29.630 0.00 0.00 0.00 2.83
2200 2256 8.028354 CACATAGGCAGATATTTCAACAAAACA 58.972 33.333 0.00 0.00 0.00 2.83
2201 2257 8.243426 TCACATAGGCAGATATTTCAACAAAAC 58.757 33.333 0.00 0.00 0.00 2.43
2204 2260 6.543465 CCTCACATAGGCAGATATTTCAACAA 59.457 38.462 0.00 0.00 38.97 2.83
2206 2262 6.291377 TCCTCACATAGGCAGATATTTCAAC 58.709 40.000 0.00 0.00 46.10 3.18
2210 2266 8.636213 CAATTTTCCTCACATAGGCAGATATTT 58.364 33.333 0.00 0.00 46.10 1.40
2212 2268 6.208204 GCAATTTTCCTCACATAGGCAGATAT 59.792 38.462 0.00 0.00 46.10 1.63
2213 2269 5.532406 GCAATTTTCCTCACATAGGCAGATA 59.468 40.000 0.00 0.00 46.10 1.98
2214 2270 4.340381 GCAATTTTCCTCACATAGGCAGAT 59.660 41.667 0.00 0.00 46.10 2.90
2215 2271 3.696051 GCAATTTTCCTCACATAGGCAGA 59.304 43.478 0.00 0.00 46.10 4.26
2217 2273 3.696051 GAGCAATTTTCCTCACATAGGCA 59.304 43.478 0.00 0.00 46.10 4.75
2218 2274 3.696051 TGAGCAATTTTCCTCACATAGGC 59.304 43.478 0.00 0.00 46.10 3.93
2226 2282 2.151202 TCACGGTGAGCAATTTTCCTC 58.849 47.619 6.76 0.00 0.00 3.71
2228 2284 2.034053 TGTTCACGGTGAGCAATTTTCC 59.966 45.455 22.81 0.98 34.67 3.13
2229 2285 3.347958 TGTTCACGGTGAGCAATTTTC 57.652 42.857 22.81 4.20 34.67 2.29
2231 2287 4.082787 CCTAATGTTCACGGTGAGCAATTT 60.083 41.667 27.36 20.63 40.85 1.82
2233 2289 3.009723 CCTAATGTTCACGGTGAGCAAT 58.990 45.455 27.36 22.35 40.85 3.56
2234 2290 2.224426 ACCTAATGTTCACGGTGAGCAA 60.224 45.455 27.36 13.91 40.85 3.91
2235 2291 1.346395 ACCTAATGTTCACGGTGAGCA 59.654 47.619 26.16 26.16 41.68 4.26
2236 2292 2.094762 ACCTAATGTTCACGGTGAGC 57.905 50.000 16.84 16.84 0.00 4.26
2238 2294 3.755112 TCAACCTAATGTTCACGGTGA 57.245 42.857 6.76 6.76 34.00 4.02
2240 2296 4.280436 TCATCAACCTAATGTTCACGGT 57.720 40.909 0.00 0.00 34.00 4.83
2242 2298 6.841119 TCAAATCATCAACCTAATGTTCACG 58.159 36.000 0.00 0.00 34.00 4.35
2243 2299 9.643693 AAATCAAATCATCAACCTAATGTTCAC 57.356 29.630 0.00 0.00 34.00 3.18
2296 2353 7.708752 CGGTATTTTTAAAATACCCATGCACAT 59.291 33.333 34.97 5.59 45.87 3.21
2345 2403 8.885494 ATCATCAACGAAATTTTCCTCAAAAA 57.115 26.923 3.61 0.00 40.98 1.94
2382 2440 6.292865 CGATTTGACACATGACAACTAAGTGT 60.293 38.462 0.00 0.00 45.21 3.55
2383 2441 6.073369 CGATTTGACACATGACAACTAAGTG 58.927 40.000 0.00 0.00 36.34 3.16
2402 5555 7.865706 AAAAGTAGGCATCAGTTATCGATTT 57.134 32.000 1.71 0.00 0.00 2.17
2533 5686 6.920569 TCGAGTAAGCCAAATAGAATTTCC 57.079 37.500 0.00 0.00 0.00 3.13
2541 5694 8.780249 GCCTAAAATATTCGAGTAAGCCAAATA 58.220 33.333 0.00 0.00 0.00 1.40
2553 5706 7.013274 CAGAAATCAAGGGCCTAAAATATTCGA 59.987 37.037 6.41 0.00 0.00 3.71
2554 5707 7.141363 CAGAAATCAAGGGCCTAAAATATTCG 58.859 38.462 6.41 1.25 0.00 3.34
2555 5708 6.925718 GCAGAAATCAAGGGCCTAAAATATTC 59.074 38.462 6.41 7.50 0.00 1.75
2556 5709 6.612863 AGCAGAAATCAAGGGCCTAAAATATT 59.387 34.615 6.41 0.00 0.00 1.28
2557 5710 6.138967 AGCAGAAATCAAGGGCCTAAAATAT 58.861 36.000 6.41 0.00 0.00 1.28
2558 5711 5.518865 AGCAGAAATCAAGGGCCTAAAATA 58.481 37.500 6.41 0.00 0.00 1.40
2559 5712 4.356436 AGCAGAAATCAAGGGCCTAAAAT 58.644 39.130 6.41 0.00 0.00 1.82
2586 5739 4.869861 ACAGAAACAAAAGGTGCACAAATC 59.130 37.500 20.43 0.19 0.00 2.17
2590 5743 3.006323 ACAACAGAAACAAAAGGTGCACA 59.994 39.130 20.43 0.00 0.00 4.57
2591 5744 3.367630 CACAACAGAAACAAAAGGTGCAC 59.632 43.478 8.80 8.80 0.00 4.57
2597 5750 6.381801 ACAAGAGTCACAACAGAAACAAAAG 58.618 36.000 0.00 0.00 0.00 2.27
2608 5762 1.261619 CTGCCGAACAAGAGTCACAAC 59.738 52.381 0.00 0.00 0.00 3.32
2618 5772 3.491792 GGTTGGAAATTTCTGCCGAACAA 60.492 43.478 17.42 8.57 0.00 2.83
2622 5776 1.988293 TGGTTGGAAATTTCTGCCGA 58.012 45.000 17.42 0.00 0.00 5.54
2623 5777 2.676076 CTTGGTTGGAAATTTCTGCCG 58.324 47.619 17.42 3.39 0.00 5.69
2624 5778 2.224257 TGCTTGGTTGGAAATTTCTGCC 60.224 45.455 17.42 15.83 0.00 4.85
2626 5780 4.053295 CAGTGCTTGGTTGGAAATTTCTG 58.947 43.478 17.42 0.28 0.00 3.02
2627 5781 3.706086 ACAGTGCTTGGTTGGAAATTTCT 59.294 39.130 17.42 0.00 0.00 2.52
2628 5782 4.058721 ACAGTGCTTGGTTGGAAATTTC 57.941 40.909 9.83 9.83 0.00 2.17
2651 5812 9.702253 AACCTAATAAGAGATAGACTGACTCAA 57.298 33.333 11.42 2.64 33.69 3.02
2662 5823 4.262463 CGGGCTGCAACCTAATAAGAGATA 60.262 45.833 6.03 0.00 0.00 1.98
2676 5837 0.031857 CAACATGAAACGGGCTGCAA 59.968 50.000 0.00 0.00 0.00 4.08
2767 5935 6.481644 GCACTCACCCAACATTTCAAAAATAA 59.518 34.615 0.00 0.00 0.00 1.40
2776 5944 4.527816 ACATAATGCACTCACCCAACATTT 59.472 37.500 0.00 0.00 33.31 2.32
2784 5952 8.601845 TTACATGTATACATAATGCACTCACC 57.398 34.615 17.86 0.00 32.59 4.02
2785 5953 9.261180 ACTTACATGTATACATAATGCACTCAC 57.739 33.333 17.86 0.00 32.59 3.51
2873 6041 5.475564 CCCTTTAGGACTAGACTAGAGATGC 59.524 48.000 16.55 0.00 38.24 3.91
2875 6043 5.075344 CCCCCTTTAGGACTAGACTAGAGAT 59.925 48.000 16.55 3.82 38.24 2.75
2878 6046 4.387232 TCCCCCTTTAGGACTAGACTAGA 58.613 47.826 16.55 0.00 38.24 2.43
2879 6047 4.168479 ACTCCCCCTTTAGGACTAGACTAG 59.832 50.000 8.00 8.00 38.24 2.57
2880 6048 4.125282 ACTCCCCCTTTAGGACTAGACTA 58.875 47.826 0.00 0.00 38.24 2.59
2881 6049 2.934511 ACTCCCCCTTTAGGACTAGACT 59.065 50.000 0.00 0.00 38.24 3.24
2882 6050 3.401589 ACTCCCCCTTTAGGACTAGAC 57.598 52.381 0.00 0.00 38.24 2.59
2887 6055 1.369403 ACCAACTCCCCCTTTAGGAC 58.631 55.000 0.00 0.00 38.24 3.85
2895 6063 0.035343 GCAAGACTACCAACTCCCCC 60.035 60.000 0.00 0.00 0.00 5.40
2912 6080 0.539438 GTTTGGTGGGATGTGAGGCA 60.539 55.000 0.00 0.00 0.00 4.75
2926 6094 3.143728 GGCGGGTGTAATATAGGTTTGG 58.856 50.000 0.00 0.00 0.00 3.28
2930 6098 2.897969 CTCTGGCGGGTGTAATATAGGT 59.102 50.000 0.00 0.00 0.00 3.08
2946 6114 3.314339 CGACTGTAAGACGCTCTGG 57.686 57.895 0.00 0.00 45.93 3.86
2974 6142 0.680618 CCCAAATTGGCTGCACTTGA 59.319 50.000 6.48 0.00 35.79 3.02
2994 6162 1.067283 TGCATGCGTAAAATGGGTTGG 60.067 47.619 14.09 0.00 0.00 3.77
2995 6163 2.360553 TGCATGCGTAAAATGGGTTG 57.639 45.000 14.09 0.00 0.00 3.77
2996 6164 3.608316 AATGCATGCGTAAAATGGGTT 57.392 38.095 13.96 0.00 0.00 4.11
3005 6173 5.809719 TTGATTGAGTTAATGCATGCGTA 57.190 34.783 13.96 4.70 0.00 4.42
3046 6584 6.252967 TGAATGAGTTAATGCATGACGTTT 57.747 33.333 0.00 0.00 0.00 3.60


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.