Multiple sequence alignment - TraesCS3B01G578500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G578500 chr3B 100.000 2756 0 0 1 2756 807929370 807932125 0.000000e+00 5090.0
1 TraesCS3B01G578500 chr3B 87.476 1589 141 27 520 2087 807881447 807882998 0.000000e+00 1779.0
2 TraesCS3B01G578500 chr3B 80.298 1477 181 67 514 1914 807812406 807813848 0.000000e+00 1014.0
3 TraesCS3B01G578500 chr3B 80.366 983 106 45 520 1459 807855496 807856434 0.000000e+00 665.0
4 TraesCS3B01G578500 chr3B 76.998 513 63 25 520 998 807852765 807853256 2.740000e-60 243.0
5 TraesCS3B01G578500 chr3D 95.057 1497 48 11 520 2004 600607361 600608843 0.000000e+00 2331.0
6 TraesCS3B01G578500 chr3D 88.992 1726 135 24 520 2224 600593935 600595626 0.000000e+00 2084.0
7 TraesCS3B01G578500 chr3D 80.668 988 124 41 811 1758 600563185 600564145 0.000000e+00 704.0
8 TraesCS3B01G578500 chr3D 82.280 807 82 29 694 1459 600584567 600585353 2.310000e-180 641.0
9 TraesCS3B01G578500 chr3D 88.029 543 38 9 1 520 559915033 559915571 3.900000e-173 617.0
10 TraesCS3B01G578500 chr3D 86.900 542 38 10 1 519 49539224 49539755 6.620000e-161 577.0
11 TraesCS3B01G578500 chr3A 91.842 1520 84 23 520 2004 730178849 730177335 0.000000e+00 2084.0
12 TraesCS3B01G578500 chr3A 87.922 1747 147 24 520 2224 730209144 730207420 0.000000e+00 1999.0
13 TraesCS3B01G578500 chr3A 81.663 938 113 37 858 1758 730280123 730279208 0.000000e+00 725.0
14 TraesCS3B01G578500 chr3A 81.111 990 111 36 520 1459 730267948 730266985 0.000000e+00 723.0
15 TraesCS3B01G578500 chr3A 86.924 543 39 11 1 519 706197010 706196476 5.120000e-162 580.0
16 TraesCS3B01G578500 chr3A 81.197 234 29 9 520 747 730336556 730336332 1.010000e-39 174.0
17 TraesCS3B01G578500 chr3A 89.610 77 8 0 2680 2756 414544409 414544333 6.280000e-17 99.0
18 TraesCS3B01G578500 chr3A 89.610 77 7 1 2681 2756 187060732 187060656 2.260000e-16 97.1
19 TraesCS3B01G578500 chr1B 87.818 550 38 14 1 528 669064302 669063760 3.900000e-173 617.0
20 TraesCS3B01G578500 chr1B 94.203 69 4 0 2688 2756 1710635 1710567 3.750000e-19 106.0
21 TraesCS3B01G578500 chr6D 87.800 541 39 9 1 519 312196711 312196176 2.350000e-170 608.0
22 TraesCS3B01G578500 chr7D 87.384 539 35 13 1 519 631356086 631356611 3.060000e-164 588.0
23 TraesCS3B01G578500 chr7D 86.949 544 36 12 1 520 213759394 213759926 1.840000e-161 579.0
24 TraesCS3B01G578500 chr7D 86.213 544 39 14 1 523 169807598 169807070 8.620000e-155 556.0
25 TraesCS3B01G578500 chr6B 87.199 539 42 10 1 519 120681299 120681830 3.060000e-164 588.0
26 TraesCS3B01G578500 chr6B 94.118 68 3 1 2690 2756 718319586 718319653 4.860000e-18 102.0
27 TraesCS3B01G578500 chr5D 86.909 550 36 11 1 525 561560848 561560310 3.960000e-163 584.0
28 TraesCS3B01G578500 chr2A 82.686 566 41 21 1 529 721497318 721497863 1.510000e-122 449.0
29 TraesCS3B01G578500 chr5B 94.118 68 4 0 2689 2756 563340505 563340572 1.350000e-18 104.0
30 TraesCS3B01G578500 chr5B 95.312 64 3 0 2693 2756 681081202 681081139 4.860000e-18 102.0
31 TraesCS3B01G578500 chr2B 94.118 68 3 1 2690 2756 768360826 768360759 4.860000e-18 102.0
32 TraesCS3B01G578500 chr1A 92.857 70 5 0 2687 2756 588384773 588384842 4.860000e-18 102.0
33 TraesCS3B01G578500 chr4D 90.667 75 5 2 2683 2756 85589706 85589779 6.280000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G578500 chr3B 807929370 807932125 2755 False 5090 5090 100.000 1 2756 1 chr3B.!!$F3 2755
1 TraesCS3B01G578500 chr3B 807881447 807882998 1551 False 1779 1779 87.476 520 2087 1 chr3B.!!$F2 1567
2 TraesCS3B01G578500 chr3B 807812406 807813848 1442 False 1014 1014 80.298 514 1914 1 chr3B.!!$F1 1400
3 TraesCS3B01G578500 chr3B 807852765 807856434 3669 False 454 665 78.682 520 1459 2 chr3B.!!$F4 939
4 TraesCS3B01G578500 chr3D 600607361 600608843 1482 False 2331 2331 95.057 520 2004 1 chr3D.!!$F6 1484
5 TraesCS3B01G578500 chr3D 600593935 600595626 1691 False 2084 2084 88.992 520 2224 1 chr3D.!!$F5 1704
6 TraesCS3B01G578500 chr3D 600563185 600564145 960 False 704 704 80.668 811 1758 1 chr3D.!!$F3 947
7 TraesCS3B01G578500 chr3D 600584567 600585353 786 False 641 641 82.280 694 1459 1 chr3D.!!$F4 765
8 TraesCS3B01G578500 chr3D 559915033 559915571 538 False 617 617 88.029 1 520 1 chr3D.!!$F2 519
9 TraesCS3B01G578500 chr3D 49539224 49539755 531 False 577 577 86.900 1 519 1 chr3D.!!$F1 518
10 TraesCS3B01G578500 chr3A 730177335 730178849 1514 True 2084 2084 91.842 520 2004 1 chr3A.!!$R4 1484
11 TraesCS3B01G578500 chr3A 730207420 730209144 1724 True 1999 1999 87.922 520 2224 1 chr3A.!!$R5 1704
12 TraesCS3B01G578500 chr3A 730279208 730280123 915 True 725 725 81.663 858 1758 1 chr3A.!!$R7 900
13 TraesCS3B01G578500 chr3A 730266985 730267948 963 True 723 723 81.111 520 1459 1 chr3A.!!$R6 939
14 TraesCS3B01G578500 chr3A 706196476 706197010 534 True 580 580 86.924 1 519 1 chr3A.!!$R3 518
15 TraesCS3B01G578500 chr1B 669063760 669064302 542 True 617 617 87.818 1 528 1 chr1B.!!$R2 527
16 TraesCS3B01G578500 chr6D 312196176 312196711 535 True 608 608 87.800 1 519 1 chr6D.!!$R1 518
17 TraesCS3B01G578500 chr7D 631356086 631356611 525 False 588 588 87.384 1 519 1 chr7D.!!$F2 518
18 TraesCS3B01G578500 chr7D 213759394 213759926 532 False 579 579 86.949 1 520 1 chr7D.!!$F1 519
19 TraesCS3B01G578500 chr7D 169807070 169807598 528 True 556 556 86.213 1 523 1 chr7D.!!$R1 522
20 TraesCS3B01G578500 chr6B 120681299 120681830 531 False 588 588 87.199 1 519 1 chr6B.!!$F1 518
21 TraesCS3B01G578500 chr5D 561560310 561560848 538 True 584 584 86.909 1 525 1 chr5D.!!$R1 524
22 TraesCS3B01G578500 chr2A 721497318 721497863 545 False 449 449 82.686 1 529 1 chr2A.!!$F1 528

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
224 243 0.833834 ACTGAGCAGCCCTAGTGTGT 60.834 55.0 0.0 0.0 0.0 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1767 4742 0.248215 GCTACGGTTGCATGCATGAC 60.248 55.0 30.64 19.27 0.0 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
194 213 5.428496 AAAGGAAGGTTAAAAGTACACGC 57.572 39.130 0.00 0.00 0.00 5.34
212 231 1.459209 CGCGAATACACAAACTGAGCA 59.541 47.619 0.00 0.00 0.00 4.26
222 241 1.059913 AAACTGAGCAGCCCTAGTGT 58.940 50.000 0.00 0.00 0.00 3.55
224 243 0.833834 ACTGAGCAGCCCTAGTGTGT 60.834 55.000 0.00 0.00 0.00 3.72
287 317 6.971726 ACGTATTCACATGGAAGACCTATA 57.028 37.500 12.89 0.00 43.23 1.31
418 476 5.643379 TTTGGACAAGAAATACATCAGCC 57.357 39.130 0.00 0.00 0.00 4.85
427 485 4.946157 AGAAATACATCAGCCCAACAGAAG 59.054 41.667 0.00 0.00 0.00 2.85
434 492 2.373169 TCAGCCCAACAGAAGACAGATT 59.627 45.455 0.00 0.00 0.00 2.40
454 512 7.227910 ACAGATTGATCAAAGCAAAAGCAAATT 59.772 29.630 13.09 0.00 0.00 1.82
468 526 7.116805 GCAAAAGCAAATTGTACAGCTAATCTT 59.883 33.333 7.67 1.25 36.07 2.40
475 533 4.106029 TGTACAGCTAATCTTGTCGACC 57.894 45.455 14.12 0.00 0.00 4.79
480 538 2.356382 AGCTAATCTTGTCGACCGAGAG 59.644 50.000 14.12 11.49 37.01 3.20
483 541 3.662247 AATCTTGTCGACCGAGAGTTT 57.338 42.857 14.12 6.15 37.01 2.66
502 560 8.789825 AGAGTTTACTAAATCTCAGTCGACTA 57.210 34.615 19.57 2.81 33.71 2.59
554 614 2.971430 TGACGAGAAAGAGAGTCACG 57.029 50.000 0.00 0.00 38.52 4.35
608 670 6.830324 AGAGATAGAGATATGGATGCTCTGTC 59.170 42.308 0.00 0.00 43.20 3.51
650 715 6.814146 AGAATAACTTTACTGAGTGCTGCTAC 59.186 38.462 0.00 0.00 0.00 3.58
658 728 1.541147 TGAGTGCTGCTACAAAATGCC 59.459 47.619 0.00 0.00 0.00 4.40
769 851 4.739587 TGTATATAACACCTGTCGGCAA 57.260 40.909 0.00 0.00 31.43 4.52
800 907 5.411831 TGATGCTCAACTGTAGTCAGAAT 57.588 39.130 2.17 0.00 43.76 2.40
906 1021 4.269123 CAGTCGCCACGCTTATAAATACAA 59.731 41.667 0.00 0.00 0.00 2.41
1399 4314 1.632965 GGGGCAGGGGTACTACAAGG 61.633 65.000 0.00 0.00 0.00 3.61
1515 4461 7.268586 AGCTCAACATTTACATACTACTCCAG 58.731 38.462 0.00 0.00 0.00 3.86
1516 4462 7.042335 GCTCAACATTTACATACTACTCCAGT 58.958 38.462 0.00 0.00 41.62 4.00
1517 4463 8.195436 GCTCAACATTTACATACTACTCCAGTA 58.805 37.037 0.00 0.00 43.89 2.74
1518 4464 9.517609 CTCAACATTTACATACTACTCCAGTAC 57.482 37.037 0.00 0.00 42.56 2.73
1766 4741 5.525378 GCTACTGCAACTAAGTAATCATGCT 59.475 40.000 0.00 0.00 39.41 3.79
1767 4742 5.808042 ACTGCAACTAAGTAATCATGCTG 57.192 39.130 0.00 0.00 38.29 4.41
1768 4743 5.248640 ACTGCAACTAAGTAATCATGCTGT 58.751 37.500 0.00 0.00 39.88 4.40
1771 4746 5.882000 TGCAACTAAGTAATCATGCTGTCAT 59.118 36.000 0.00 0.00 34.97 3.06
1784 4759 1.085893 CTGTCATGCATGCAACCGTA 58.914 50.000 26.68 9.49 0.00 4.02
1785 4760 1.063027 CTGTCATGCATGCAACCGTAG 59.937 52.381 26.68 15.13 0.00 3.51
1946 4931 2.872245 GTGCGTCTGGTATAGTACGGTA 59.128 50.000 0.00 0.00 33.49 4.02
1978 4969 5.861787 TGTACGTGTGTAATGTGATCTCAAG 59.138 40.000 0.00 0.00 30.94 3.02
2022 5024 7.801716 TTAATACTAGTCATCAATTGGTGCC 57.198 36.000 14.14 2.13 0.00 5.01
2023 5025 2.632377 ACTAGTCATCAATTGGTGCCG 58.368 47.619 14.14 4.61 0.00 5.69
2024 5026 1.942657 CTAGTCATCAATTGGTGCCGG 59.057 52.381 14.14 0.00 0.00 6.13
2043 5045 2.748132 CGGTGCATGGGCTAGGAATTAA 60.748 50.000 0.00 0.00 41.91 1.40
2044 5046 2.887152 GGTGCATGGGCTAGGAATTAAG 59.113 50.000 0.00 0.00 41.91 1.85
2098 5105 2.752903 CAATTCAAGAAGGTAACCCGGG 59.247 50.000 22.25 22.25 35.12 5.73
2100 5107 2.323999 TCAAGAAGGTAACCCGGGTA 57.676 50.000 30.52 12.91 35.12 3.69
2123 5130 9.606631 GGTATTGCATTAACAAAATATTTCCCA 57.393 29.630 0.10 0.00 32.27 4.37
2133 5140 8.546597 AACAAAATATTTCCCAGCAATGTTAC 57.453 30.769 0.10 0.00 0.00 2.50
2140 5147 3.609853 TCCCAGCAATGTTACATGAGTC 58.390 45.455 0.00 0.00 0.00 3.36
2183 5190 8.574251 TCTTTAGTGCAGCCAGAAATATAAAA 57.426 30.769 0.00 0.00 0.00 1.52
2188 5195 7.062957 AGTGCAGCCAGAAATATAAAAGGTAT 58.937 34.615 0.00 0.00 0.00 2.73
2224 5232 6.142818 TGTAAATATGGCCATTGCTAACAC 57.857 37.500 26.37 13.08 37.74 3.32
2225 5233 5.890985 TGTAAATATGGCCATTGCTAACACT 59.109 36.000 26.37 0.00 37.74 3.55
2226 5234 7.057264 TGTAAATATGGCCATTGCTAACACTA 58.943 34.615 26.37 0.91 37.74 2.74
2227 5235 6.391227 AAATATGGCCATTGCTAACACTAC 57.609 37.500 26.37 0.00 37.74 2.73
2228 5236 2.869101 TGGCCATTGCTAACACTACA 57.131 45.000 0.00 0.00 37.74 2.74
2229 5237 3.147553 TGGCCATTGCTAACACTACAA 57.852 42.857 0.00 0.00 37.74 2.41
2230 5238 3.081061 TGGCCATTGCTAACACTACAAG 58.919 45.455 0.00 0.00 37.74 3.16
2231 5239 3.244735 TGGCCATTGCTAACACTACAAGA 60.245 43.478 0.00 0.00 37.74 3.02
2232 5240 3.947834 GGCCATTGCTAACACTACAAGAT 59.052 43.478 0.00 0.00 37.74 2.40
2233 5241 5.123227 GGCCATTGCTAACACTACAAGATA 58.877 41.667 0.00 0.00 37.74 1.98
2234 5242 5.007724 GGCCATTGCTAACACTACAAGATAC 59.992 44.000 0.00 0.00 37.74 2.24
2235 5243 5.007724 GCCATTGCTAACACTACAAGATACC 59.992 44.000 0.00 0.00 33.53 2.73
2236 5244 5.527582 CCATTGCTAACACTACAAGATACCC 59.472 44.000 0.00 0.00 0.00 3.69
2237 5245 4.748277 TGCTAACACTACAAGATACCCC 57.252 45.455 0.00 0.00 0.00 4.95
2238 5246 4.098155 TGCTAACACTACAAGATACCCCA 58.902 43.478 0.00 0.00 0.00 4.96
2239 5247 4.081309 TGCTAACACTACAAGATACCCCAC 60.081 45.833 0.00 0.00 0.00 4.61
2240 5248 3.604875 AACACTACAAGATACCCCACG 57.395 47.619 0.00 0.00 0.00 4.94
2241 5249 1.206371 ACACTACAAGATACCCCACGC 59.794 52.381 0.00 0.00 0.00 5.34
2242 5250 1.206132 CACTACAAGATACCCCACGCA 59.794 52.381 0.00 0.00 0.00 5.24
2243 5251 2.116238 ACTACAAGATACCCCACGCAT 58.884 47.619 0.00 0.00 0.00 4.73
2244 5252 2.504175 ACTACAAGATACCCCACGCATT 59.496 45.455 0.00 0.00 0.00 3.56
2245 5253 1.750193 ACAAGATACCCCACGCATTG 58.250 50.000 0.00 0.00 0.00 2.82
2246 5254 0.381801 CAAGATACCCCACGCATTGC 59.618 55.000 0.00 0.00 0.00 3.56
2247 5255 0.034574 AAGATACCCCACGCATTGCA 60.035 50.000 9.69 0.00 0.00 4.08
2248 5256 0.464373 AGATACCCCACGCATTGCAG 60.464 55.000 9.69 4.31 0.00 4.41
2249 5257 2.063541 GATACCCCACGCATTGCAGC 62.064 60.000 9.69 0.00 0.00 5.25
2262 5270 4.651585 GCAGCGGCAAATGTGAAA 57.348 50.000 3.18 0.00 40.72 2.69
2263 5271 3.126729 GCAGCGGCAAATGTGAAAT 57.873 47.368 3.18 0.00 40.72 2.17
2264 5272 2.276472 GCAGCGGCAAATGTGAAATA 57.724 45.000 3.18 0.00 40.72 1.40
2265 5273 2.813061 GCAGCGGCAAATGTGAAATAT 58.187 42.857 3.18 0.00 40.72 1.28
2266 5274 2.791004 GCAGCGGCAAATGTGAAATATC 59.209 45.455 3.18 0.00 40.72 1.63
2267 5275 3.734597 GCAGCGGCAAATGTGAAATATCA 60.735 43.478 3.18 0.00 40.72 2.15
2268 5276 4.422840 CAGCGGCAAATGTGAAATATCAA 58.577 39.130 1.45 0.00 37.30 2.57
2269 5277 4.266029 CAGCGGCAAATGTGAAATATCAAC 59.734 41.667 1.45 0.00 37.30 3.18
2270 5278 4.158394 AGCGGCAAATGTGAAATATCAACT 59.842 37.500 1.45 0.00 37.30 3.16
2271 5279 5.356751 AGCGGCAAATGTGAAATATCAACTA 59.643 36.000 1.45 0.00 37.30 2.24
2272 5280 6.039717 AGCGGCAAATGTGAAATATCAACTAT 59.960 34.615 1.45 0.00 37.30 2.12
2273 5281 7.228507 AGCGGCAAATGTGAAATATCAACTATA 59.771 33.333 1.45 0.00 37.30 1.31
2274 5282 7.323656 GCGGCAAATGTGAAATATCAACTATAC 59.676 37.037 0.00 0.00 37.30 1.47
2275 5283 8.341903 CGGCAAATGTGAAATATCAACTATACA 58.658 33.333 0.00 0.00 37.30 2.29
2276 5284 9.450807 GGCAAATGTGAAATATCAACTATACAC 57.549 33.333 0.00 0.00 37.30 2.90
2314 5322 8.868916 AGCAATTAAAATGTGCTAATTAAACGG 58.131 29.630 9.26 0.00 46.52 4.44
2315 5323 8.113675 GCAATTAAAATGTGCTAATTAAACGGG 58.886 33.333 0.00 0.00 35.36 5.28
2316 5324 8.599774 CAATTAAAATGTGCTAATTAAACGGGG 58.400 33.333 0.00 0.00 0.00 5.73
2317 5325 5.986501 AAAATGTGCTAATTAAACGGGGA 57.013 34.783 0.00 0.00 0.00 4.81
2318 5326 5.576447 AAATGTGCTAATTAAACGGGGAG 57.424 39.130 0.00 0.00 0.00 4.30
2319 5327 2.361789 TGTGCTAATTAAACGGGGAGC 58.638 47.619 0.00 0.00 0.00 4.70
2320 5328 2.290387 TGTGCTAATTAAACGGGGAGCA 60.290 45.455 0.00 0.00 37.58 4.26
2321 5329 2.361789 TGCTAATTAAACGGGGAGCAC 58.638 47.619 0.00 0.00 35.12 4.40
2322 5330 1.674441 GCTAATTAAACGGGGAGCACC 59.326 52.381 0.00 0.00 39.11 5.01
2323 5331 2.942306 GCTAATTAAACGGGGAGCACCA 60.942 50.000 1.58 0.00 42.91 4.17
2324 5332 2.525105 AATTAAACGGGGAGCACCAT 57.475 45.000 1.58 0.00 42.91 3.55
2325 5333 2.052782 ATTAAACGGGGAGCACCATC 57.947 50.000 1.58 0.00 42.91 3.51
2326 5334 0.988832 TTAAACGGGGAGCACCATCT 59.011 50.000 1.58 0.00 42.91 2.90
2327 5335 0.251916 TAAACGGGGAGCACCATCTG 59.748 55.000 1.58 0.00 42.91 2.90
2328 5336 1.779061 AAACGGGGAGCACCATCTGT 61.779 55.000 1.58 0.00 42.91 3.41
2341 5349 4.994744 TCTGTGCATCAGACGGTG 57.005 55.556 12.97 0.00 46.77 4.94
2342 5350 2.049435 TCTGTGCATCAGACGGTGT 58.951 52.632 12.97 0.00 46.77 4.16
2343 5351 0.392706 TCTGTGCATCAGACGGTGTT 59.607 50.000 12.97 0.00 46.77 3.32
2344 5352 1.202639 TCTGTGCATCAGACGGTGTTT 60.203 47.619 12.97 0.00 46.77 2.83
2345 5353 1.195448 CTGTGCATCAGACGGTGTTTC 59.805 52.381 9.81 0.00 46.27 2.78
2346 5354 0.163788 GTGCATCAGACGGTGTTTCG 59.836 55.000 0.00 0.00 0.00 3.46
2347 5355 0.032815 TGCATCAGACGGTGTTTCGA 59.967 50.000 0.00 0.00 0.00 3.71
2348 5356 1.144969 GCATCAGACGGTGTTTCGAA 58.855 50.000 0.00 0.00 0.00 3.71
2349 5357 1.732259 GCATCAGACGGTGTTTCGAAT 59.268 47.619 0.00 0.00 0.00 3.34
2350 5358 2.927477 GCATCAGACGGTGTTTCGAATA 59.073 45.455 0.00 0.00 0.00 1.75
2351 5359 3.555956 GCATCAGACGGTGTTTCGAATAT 59.444 43.478 0.00 0.00 0.00 1.28
2352 5360 4.034048 GCATCAGACGGTGTTTCGAATATT 59.966 41.667 0.00 0.00 0.00 1.28
2353 5361 5.492854 CATCAGACGGTGTTTCGAATATTG 58.507 41.667 0.00 0.00 0.00 1.90
2354 5362 4.811908 TCAGACGGTGTTTCGAATATTGA 58.188 39.130 0.00 0.00 0.00 2.57
2355 5363 4.862574 TCAGACGGTGTTTCGAATATTGAG 59.137 41.667 0.00 0.00 0.00 3.02
2356 5364 4.862574 CAGACGGTGTTTCGAATATTGAGA 59.137 41.667 0.00 0.00 0.00 3.27
2357 5365 5.347635 CAGACGGTGTTTCGAATATTGAGAA 59.652 40.000 0.00 0.00 0.00 2.87
2358 5366 6.036083 CAGACGGTGTTTCGAATATTGAGAAT 59.964 38.462 0.00 0.00 0.00 2.40
2359 5367 7.222031 CAGACGGTGTTTCGAATATTGAGAATA 59.778 37.037 0.00 0.00 0.00 1.75
2360 5368 7.762615 AGACGGTGTTTCGAATATTGAGAATAA 59.237 33.333 0.00 0.00 0.00 1.40
2361 5369 8.259049 ACGGTGTTTCGAATATTGAGAATAAA 57.741 30.769 0.00 0.00 0.00 1.40
2362 5370 8.889717 ACGGTGTTTCGAATATTGAGAATAAAT 58.110 29.630 0.00 0.00 0.00 1.40
2363 5371 9.716507 CGGTGTTTCGAATATTGAGAATAAATT 57.283 29.630 0.00 0.00 0.00 1.82
2398 5406 8.718102 TCTGAAAGAACTATGGCTAATAACAC 57.282 34.615 0.00 0.00 42.31 3.32
2399 5407 8.540388 TCTGAAAGAACTATGGCTAATAACACT 58.460 33.333 0.00 0.00 42.31 3.55
2400 5408 8.492673 TGAAAGAACTATGGCTAATAACACTG 57.507 34.615 0.00 0.00 0.00 3.66
2401 5409 8.318412 TGAAAGAACTATGGCTAATAACACTGA 58.682 33.333 0.00 0.00 0.00 3.41
2402 5410 9.162764 GAAAGAACTATGGCTAATAACACTGAA 57.837 33.333 0.00 0.00 0.00 3.02
2403 5411 8.494016 AAGAACTATGGCTAATAACACTGAAC 57.506 34.615 0.00 0.00 0.00 3.18
2404 5412 7.048512 AGAACTATGGCTAATAACACTGAACC 58.951 38.462 0.00 0.00 0.00 3.62
2405 5413 6.561519 ACTATGGCTAATAACACTGAACCT 57.438 37.500 0.00 0.00 0.00 3.50
2406 5414 6.958767 ACTATGGCTAATAACACTGAACCTT 58.041 36.000 0.00 0.00 0.00 3.50
2407 5415 7.402862 ACTATGGCTAATAACACTGAACCTTT 58.597 34.615 0.00 0.00 0.00 3.11
2408 5416 6.759497 ATGGCTAATAACACTGAACCTTTC 57.241 37.500 0.00 0.00 0.00 2.62
2409 5417 5.626142 TGGCTAATAACACTGAACCTTTCA 58.374 37.500 0.00 0.00 38.17 2.69
2410 5418 6.245408 TGGCTAATAACACTGAACCTTTCAT 58.755 36.000 0.00 0.00 39.30 2.57
2411 5419 6.150976 TGGCTAATAACACTGAACCTTTCATG 59.849 38.462 0.00 0.00 39.30 3.07
2412 5420 6.151144 GGCTAATAACACTGAACCTTTCATGT 59.849 38.462 0.00 0.00 39.30 3.21
2413 5421 7.244192 GCTAATAACACTGAACCTTTCATGTC 58.756 38.462 0.00 0.00 39.30 3.06
2414 5422 6.575162 AATAACACTGAACCTTTCATGTCC 57.425 37.500 0.00 0.00 39.30 4.02
2415 5423 3.576078 ACACTGAACCTTTCATGTCCA 57.424 42.857 0.00 0.00 39.30 4.02
2416 5424 4.104383 ACACTGAACCTTTCATGTCCAT 57.896 40.909 0.00 0.00 39.30 3.41
2417 5425 5.241403 ACACTGAACCTTTCATGTCCATA 57.759 39.130 0.00 0.00 39.30 2.74
2418 5426 5.003804 ACACTGAACCTTTCATGTCCATAC 58.996 41.667 0.00 0.00 39.30 2.39
2419 5427 5.221925 ACACTGAACCTTTCATGTCCATACT 60.222 40.000 0.00 0.00 39.30 2.12
2420 5428 5.707298 CACTGAACCTTTCATGTCCATACTT 59.293 40.000 0.00 0.00 39.30 2.24
2421 5429 5.940470 ACTGAACCTTTCATGTCCATACTTC 59.060 40.000 0.00 0.00 39.30 3.01
2422 5430 5.875224 TGAACCTTTCATGTCCATACTTCA 58.125 37.500 0.00 0.00 34.08 3.02
2423 5431 5.939883 TGAACCTTTCATGTCCATACTTCAG 59.060 40.000 0.00 0.00 34.08 3.02
2424 5432 4.848357 ACCTTTCATGTCCATACTTCAGG 58.152 43.478 0.00 0.00 0.00 3.86
2425 5433 4.289672 ACCTTTCATGTCCATACTTCAGGT 59.710 41.667 0.00 0.00 0.00 4.00
2426 5434 5.222130 ACCTTTCATGTCCATACTTCAGGTT 60.222 40.000 0.00 0.00 0.00 3.50
2427 5435 6.012858 ACCTTTCATGTCCATACTTCAGGTTA 60.013 38.462 0.00 0.00 0.00 2.85
2428 5436 6.540189 CCTTTCATGTCCATACTTCAGGTTAG 59.460 42.308 0.00 0.00 0.00 2.34
2429 5437 5.614324 TCATGTCCATACTTCAGGTTAGG 57.386 43.478 0.00 0.00 0.00 2.69
2430 5438 3.906720 TGTCCATACTTCAGGTTAGGC 57.093 47.619 0.00 0.00 0.00 3.93
2431 5439 3.450904 TGTCCATACTTCAGGTTAGGCT 58.549 45.455 0.00 0.00 0.00 4.58
2432 5440 3.197766 TGTCCATACTTCAGGTTAGGCTG 59.802 47.826 0.00 0.00 0.00 4.85
2433 5441 3.451178 GTCCATACTTCAGGTTAGGCTGA 59.549 47.826 0.00 0.00 0.00 4.26
2434 5442 4.081087 GTCCATACTTCAGGTTAGGCTGAA 60.081 45.833 0.00 0.00 37.88 3.02
2435 5443 4.721776 TCCATACTTCAGGTTAGGCTGAAT 59.278 41.667 0.00 0.00 38.66 2.57
2436 5444 5.191722 TCCATACTTCAGGTTAGGCTGAATT 59.808 40.000 0.00 0.00 38.66 2.17
2437 5445 6.385759 TCCATACTTCAGGTTAGGCTGAATTA 59.614 38.462 0.00 0.00 38.66 1.40
2438 5446 7.054124 CCATACTTCAGGTTAGGCTGAATTAA 58.946 38.462 0.00 0.00 38.66 1.40
2439 5447 7.721399 CCATACTTCAGGTTAGGCTGAATTAAT 59.279 37.037 0.00 0.00 38.66 1.40
2440 5448 9.778741 CATACTTCAGGTTAGGCTGAATTAATA 57.221 33.333 0.00 0.00 38.66 0.98
2443 5451 9.700831 ACTTCAGGTTAGGCTGAATTAATATTT 57.299 29.630 0.00 0.00 38.66 1.40
2489 5497 9.985318 TCAAAAATTTAAATGTTTGCAGAAGTG 57.015 25.926 28.20 11.85 41.35 3.16
2490 5498 9.771915 CAAAAATTTAAATGTTTGCAGAAGTGT 57.228 25.926 24.15 0.00 36.95 3.55
2491 5499 9.771915 AAAAATTTAAATGTTTGCAGAAGTGTG 57.228 25.926 14.32 0.00 0.00 3.82
2492 5500 8.491331 AAATTTAAATGTTTGCAGAAGTGTGT 57.509 26.923 0.39 0.00 0.00 3.72
2493 5501 9.593134 AAATTTAAATGTTTGCAGAAGTGTGTA 57.407 25.926 0.39 0.00 0.00 2.90
2494 5502 7.979115 TTTAAATGTTTGCAGAAGTGTGTAC 57.021 32.000 0.00 0.00 0.00 2.90
2495 5503 5.574891 AAATGTTTGCAGAAGTGTGTACA 57.425 34.783 0.00 0.00 0.00 2.90
2496 5504 5.574891 AATGTTTGCAGAAGTGTGTACAA 57.425 34.783 0.00 0.00 0.00 2.41
2497 5505 5.772825 ATGTTTGCAGAAGTGTGTACAAT 57.227 34.783 0.00 0.00 0.00 2.71
2498 5506 5.168526 TGTTTGCAGAAGTGTGTACAATC 57.831 39.130 0.00 0.00 0.00 2.67
2499 5507 4.881273 TGTTTGCAGAAGTGTGTACAATCT 59.119 37.500 0.00 0.00 0.00 2.40
2500 5508 6.052360 TGTTTGCAGAAGTGTGTACAATCTA 58.948 36.000 0.00 0.00 0.00 1.98
2501 5509 6.202762 TGTTTGCAGAAGTGTGTACAATCTAG 59.797 38.462 0.00 0.00 0.00 2.43
2502 5510 5.722021 TGCAGAAGTGTGTACAATCTAGA 57.278 39.130 0.00 0.00 0.00 2.43
2503 5511 6.096673 TGCAGAAGTGTGTACAATCTAGAA 57.903 37.500 0.00 0.00 0.00 2.10
2504 5512 5.926542 TGCAGAAGTGTGTACAATCTAGAAC 59.073 40.000 0.00 0.00 0.00 3.01
2505 5513 5.926542 GCAGAAGTGTGTACAATCTAGAACA 59.073 40.000 0.00 0.00 0.00 3.18
2506 5514 6.128795 GCAGAAGTGTGTACAATCTAGAACAC 60.129 42.308 15.54 15.54 42.00 3.32
2507 5515 6.088217 CAGAAGTGTGTACAATCTAGAACACG 59.912 42.308 16.72 2.61 44.03 4.49
2508 5516 5.449107 AGTGTGTACAATCTAGAACACGT 57.551 39.130 16.72 7.33 44.03 4.49
2509 5517 5.839621 AGTGTGTACAATCTAGAACACGTT 58.160 37.500 16.72 7.81 44.03 3.99
2510 5518 6.278363 AGTGTGTACAATCTAGAACACGTTT 58.722 36.000 16.72 5.92 44.03 3.60
2511 5519 7.428020 AGTGTGTACAATCTAGAACACGTTTA 58.572 34.615 16.72 1.55 44.03 2.01
2512 5520 7.594015 AGTGTGTACAATCTAGAACACGTTTAG 59.406 37.037 16.72 0.00 44.03 1.85
2513 5521 7.592533 GTGTGTACAATCTAGAACACGTTTAGA 59.407 37.037 16.72 0.00 44.03 2.10
2514 5522 8.301720 TGTGTACAATCTAGAACACGTTTAGAT 58.698 33.333 16.72 0.00 44.03 1.98
2515 5523 9.778993 GTGTACAATCTAGAACACGTTTAGATA 57.221 33.333 9.13 0.00 34.05 1.98
2516 5524 9.999009 TGTACAATCTAGAACACGTTTAGATAG 57.001 33.333 0.00 0.00 34.05 2.08
2519 5527 9.570488 ACAATCTAGAACACGTTTAGATAGAAC 57.430 33.333 0.00 0.00 34.05 3.01
2520 5528 9.569167 CAATCTAGAACACGTTTAGATAGAACA 57.431 33.333 0.00 0.00 34.05 3.18
2544 5552 9.353431 ACATATTTACATATTTCCTGCATCACA 57.647 29.630 0.00 0.00 0.00 3.58
2552 5560 9.353431 ACATATTTCCTGCATCACATAATAACA 57.647 29.630 0.00 0.00 0.00 2.41
2557 5565 8.929827 TTCCTGCATCACATAATAACAAAATG 57.070 30.769 0.00 0.00 0.00 2.32
2558 5566 8.291191 TCCTGCATCACATAATAACAAAATGA 57.709 30.769 0.00 0.00 0.00 2.57
2559 5567 8.747471 TCCTGCATCACATAATAACAAAATGAA 58.253 29.630 0.00 0.00 0.00 2.57
2560 5568 9.537192 CCTGCATCACATAATAACAAAATGAAT 57.463 29.630 0.00 0.00 0.00 2.57
2562 5570 9.235537 TGCATCACATAATAACAAAATGAATCG 57.764 29.630 0.00 0.00 0.00 3.34
2563 5571 8.209869 GCATCACATAATAACAAAATGAATCGC 58.790 33.333 0.00 0.00 0.00 4.58
2564 5572 9.454585 CATCACATAATAACAAAATGAATCGCT 57.545 29.630 0.00 0.00 0.00 4.93
2566 5574 9.288124 TCACATAATAACAAAATGAATCGCTTG 57.712 29.630 0.00 0.00 0.00 4.01
2567 5575 9.288124 CACATAATAACAAAATGAATCGCTTGA 57.712 29.630 0.00 0.00 0.00 3.02
2594 5602 4.614555 TTTACATGCATGTGTCGATTCC 57.385 40.909 36.72 0.00 41.89 3.01
2595 5603 1.009078 ACATGCATGTGTCGATTCCG 58.991 50.000 30.92 0.83 40.03 4.30
2596 5604 0.305617 CATGCATGTGTCGATTCCGG 59.694 55.000 18.91 0.00 36.24 5.14
2597 5605 1.439353 ATGCATGTGTCGATTCCGGC 61.439 55.000 0.00 0.00 41.51 6.13
2598 5606 2.823829 GCATGTGTCGATTCCGGCC 61.824 63.158 0.00 0.00 40.18 6.13
2599 5607 2.202878 ATGTGTCGATTCCGGCCG 60.203 61.111 21.04 21.04 40.18 6.13
2600 5608 3.014085 ATGTGTCGATTCCGGCCGT 62.014 57.895 26.12 5.12 40.18 5.68
2601 5609 2.884207 GTGTCGATTCCGGCCGTC 60.884 66.667 26.12 14.55 40.18 4.79
2602 5610 3.375239 TGTCGATTCCGGCCGTCA 61.375 61.111 26.12 10.60 40.18 4.35
2603 5611 2.884207 GTCGATTCCGGCCGTCAC 60.884 66.667 26.12 11.86 33.63 3.67
2604 5612 3.066190 TCGATTCCGGCCGTCACT 61.066 61.111 26.12 5.31 36.24 3.41
2605 5613 2.885644 CGATTCCGGCCGTCACTG 60.886 66.667 26.12 8.39 0.00 3.66
2606 5614 3.195698 GATTCCGGCCGTCACTGC 61.196 66.667 26.12 4.21 0.00 4.40
2607 5615 3.950794 GATTCCGGCCGTCACTGCA 62.951 63.158 26.12 0.00 0.00 4.41
2608 5616 3.329542 ATTCCGGCCGTCACTGCAT 62.330 57.895 26.12 0.32 0.00 3.96
2609 5617 4.758251 TCCGGCCGTCACTGCATG 62.758 66.667 26.12 5.01 0.00 4.06
2611 5619 3.049674 CGGCCGTCACTGCATGTT 61.050 61.111 19.50 0.00 0.00 2.71
2612 5620 1.739929 CGGCCGTCACTGCATGTTA 60.740 57.895 19.50 0.00 0.00 2.41
2613 5621 1.089481 CGGCCGTCACTGCATGTTAT 61.089 55.000 19.50 0.00 0.00 1.89
2614 5622 1.094785 GGCCGTCACTGCATGTTATT 58.905 50.000 0.00 0.00 0.00 1.40
2615 5623 1.064060 GGCCGTCACTGCATGTTATTC 59.936 52.381 0.00 0.00 0.00 1.75
2616 5624 1.064060 GCCGTCACTGCATGTTATTCC 59.936 52.381 0.00 0.00 0.00 3.01
2617 5625 2.632377 CCGTCACTGCATGTTATTCCT 58.368 47.619 0.00 0.00 0.00 3.36
2618 5626 3.792401 CCGTCACTGCATGTTATTCCTA 58.208 45.455 0.00 0.00 0.00 2.94
2619 5627 4.188462 CCGTCACTGCATGTTATTCCTAA 58.812 43.478 0.00 0.00 0.00 2.69
2620 5628 4.634004 CCGTCACTGCATGTTATTCCTAAA 59.366 41.667 0.00 0.00 0.00 1.85
2621 5629 5.220662 CCGTCACTGCATGTTATTCCTAAAG 60.221 44.000 0.00 0.00 0.00 1.85
2622 5630 5.351465 CGTCACTGCATGTTATTCCTAAAGT 59.649 40.000 0.00 0.00 0.00 2.66
2623 5631 6.546395 GTCACTGCATGTTATTCCTAAAGTG 58.454 40.000 0.00 0.00 35.07 3.16
2624 5632 5.123820 TCACTGCATGTTATTCCTAAAGTGC 59.876 40.000 0.00 0.00 34.05 4.40
2625 5633 5.124457 CACTGCATGTTATTCCTAAAGTGCT 59.876 40.000 0.00 0.00 33.73 4.40
2626 5634 6.316140 CACTGCATGTTATTCCTAAAGTGCTA 59.684 38.462 0.00 0.00 33.73 3.49
2627 5635 7.012704 CACTGCATGTTATTCCTAAAGTGCTAT 59.987 37.037 0.00 0.00 33.73 2.97
2628 5636 7.227512 ACTGCATGTTATTCCTAAAGTGCTATC 59.772 37.037 0.00 0.00 33.73 2.08
2629 5637 7.053498 TGCATGTTATTCCTAAAGTGCTATCA 58.947 34.615 0.00 0.00 33.73 2.15
2630 5638 7.227314 TGCATGTTATTCCTAAAGTGCTATCAG 59.773 37.037 0.00 0.00 33.73 2.90
2631 5639 7.579726 CATGTTATTCCTAAAGTGCTATCAGC 58.420 38.462 0.00 0.00 42.82 4.26
2649 5657 2.427232 GCAGCTTGCAACTTGAATGA 57.573 45.000 9.10 0.00 44.26 2.57
2650 5658 2.056577 GCAGCTTGCAACTTGAATGAC 58.943 47.619 9.10 0.00 44.26 3.06
2651 5659 2.288030 GCAGCTTGCAACTTGAATGACT 60.288 45.455 9.10 0.00 44.26 3.41
2652 5660 3.305964 CAGCTTGCAACTTGAATGACTG 58.694 45.455 0.00 0.00 0.00 3.51
2653 5661 3.004002 CAGCTTGCAACTTGAATGACTGA 59.996 43.478 0.00 0.00 0.00 3.41
2654 5662 3.004106 AGCTTGCAACTTGAATGACTGAC 59.996 43.478 0.00 0.00 0.00 3.51
2655 5663 3.243168 GCTTGCAACTTGAATGACTGACA 60.243 43.478 0.00 0.00 0.00 3.58
2656 5664 4.558095 GCTTGCAACTTGAATGACTGACAT 60.558 41.667 0.00 0.00 41.45 3.06
2657 5665 5.335113 GCTTGCAACTTGAATGACTGACATA 60.335 40.000 0.00 0.00 38.38 2.29
2658 5666 6.631971 TTGCAACTTGAATGACTGACATAA 57.368 33.333 0.00 0.00 38.38 1.90
2659 5667 6.631971 TGCAACTTGAATGACTGACATAAA 57.368 33.333 0.00 0.00 38.38 1.40
2660 5668 6.671190 TGCAACTTGAATGACTGACATAAAG 58.329 36.000 11.22 11.22 38.38 1.85
2661 5669 5.570589 GCAACTTGAATGACTGACATAAAGC 59.429 40.000 12.13 0.00 38.38 3.51
2662 5670 5.886960 ACTTGAATGACTGACATAAAGCC 57.113 39.130 12.13 0.00 38.38 4.35
2663 5671 5.564550 ACTTGAATGACTGACATAAAGCCT 58.435 37.500 12.13 0.00 38.38 4.58
2664 5672 5.413833 ACTTGAATGACTGACATAAAGCCTG 59.586 40.000 12.13 0.00 38.38 4.85
2665 5673 5.164620 TGAATGACTGACATAAAGCCTGA 57.835 39.130 0.00 0.00 38.38 3.86
2666 5674 5.748402 TGAATGACTGACATAAAGCCTGAT 58.252 37.500 0.00 0.00 38.38 2.90
2667 5675 6.888105 TGAATGACTGACATAAAGCCTGATA 58.112 36.000 0.00 0.00 38.38 2.15
2668 5676 7.337938 TGAATGACTGACATAAAGCCTGATAA 58.662 34.615 0.00 0.00 38.38 1.75
2669 5677 7.828717 TGAATGACTGACATAAAGCCTGATAAA 59.171 33.333 0.00 0.00 38.38 1.40
2670 5678 8.757982 AATGACTGACATAAAGCCTGATAAAT 57.242 30.769 0.00 0.00 38.38 1.40
2671 5679 7.558161 TGACTGACATAAAGCCTGATAAATG 57.442 36.000 0.00 0.00 0.00 2.32
2672 5680 6.543465 TGACTGACATAAAGCCTGATAAATGG 59.457 38.462 0.00 0.00 0.00 3.16
2696 5704 6.312399 CAAAAACTGCTTGGTATACACTCA 57.688 37.500 5.01 0.00 0.00 3.41
2697 5705 5.941948 AAAACTGCTTGGTATACACTCAC 57.058 39.130 5.01 0.00 0.00 3.51
2698 5706 4.891992 AACTGCTTGGTATACACTCACT 57.108 40.909 5.01 0.00 0.00 3.41
2699 5707 4.457834 ACTGCTTGGTATACACTCACTC 57.542 45.455 5.01 0.00 0.00 3.51
2700 5708 3.195825 ACTGCTTGGTATACACTCACTCC 59.804 47.826 5.01 0.00 0.00 3.85
2701 5709 2.165641 TGCTTGGTATACACTCACTCCG 59.834 50.000 5.01 0.00 0.00 4.63
2702 5710 2.165845 GCTTGGTATACACTCACTCCGT 59.834 50.000 5.01 0.00 0.00 4.69
2703 5711 3.734293 GCTTGGTATACACTCACTCCGTC 60.734 52.174 5.01 0.00 0.00 4.79
2704 5712 2.372264 TGGTATACACTCACTCCGTCC 58.628 52.381 5.01 0.00 0.00 4.79
2705 5713 1.332997 GGTATACACTCACTCCGTCCG 59.667 57.143 5.01 0.00 0.00 4.79
2706 5714 1.332997 GTATACACTCACTCCGTCCGG 59.667 57.143 0.00 0.00 0.00 5.14
2707 5715 0.034767 ATACACTCACTCCGTCCGGA 60.035 55.000 0.00 0.00 42.90 5.14
2708 5716 0.250858 TACACTCACTCCGTCCGGAA 60.251 55.000 5.23 0.00 44.66 4.30
2709 5717 1.111116 ACACTCACTCCGTCCGGAAA 61.111 55.000 5.23 0.00 44.66 3.13
2710 5718 0.246635 CACTCACTCCGTCCGGAAAT 59.753 55.000 5.23 0.00 44.66 2.17
2711 5719 1.475280 CACTCACTCCGTCCGGAAATA 59.525 52.381 5.23 0.00 44.66 1.40
2712 5720 1.475682 ACTCACTCCGTCCGGAAATAC 59.524 52.381 5.23 0.00 44.66 1.89
2713 5721 1.749634 CTCACTCCGTCCGGAAATACT 59.250 52.381 5.23 0.00 44.66 2.12
2714 5722 1.747355 TCACTCCGTCCGGAAATACTC 59.253 52.381 5.23 0.00 44.66 2.59
2715 5723 1.475280 CACTCCGTCCGGAAATACTCA 59.525 52.381 5.23 0.00 44.66 3.41
2716 5724 2.100916 CACTCCGTCCGGAAATACTCAT 59.899 50.000 5.23 0.00 44.66 2.90
2717 5725 2.361438 ACTCCGTCCGGAAATACTCATC 59.639 50.000 5.23 0.00 44.66 2.92
2718 5726 2.361119 CTCCGTCCGGAAATACTCATCA 59.639 50.000 5.23 0.00 44.66 3.07
2719 5727 2.963101 TCCGTCCGGAAATACTCATCAT 59.037 45.455 5.23 0.00 42.05 2.45
2720 5728 3.005472 TCCGTCCGGAAATACTCATCATC 59.995 47.826 5.23 0.00 42.05 2.92
2721 5729 3.243737 CCGTCCGGAAATACTCATCATCA 60.244 47.826 5.23 0.00 37.50 3.07
2722 5730 4.368315 CGTCCGGAAATACTCATCATCAA 58.632 43.478 5.23 0.00 0.00 2.57
2723 5731 4.808895 CGTCCGGAAATACTCATCATCAAA 59.191 41.667 5.23 0.00 0.00 2.69
2724 5732 5.293324 CGTCCGGAAATACTCATCATCAAAA 59.707 40.000 5.23 0.00 0.00 2.44
2725 5733 6.017934 CGTCCGGAAATACTCATCATCAAAAT 60.018 38.462 5.23 0.00 0.00 1.82
2726 5734 7.134815 GTCCGGAAATACTCATCATCAAAATG 58.865 38.462 5.23 0.00 0.00 2.32
2727 5735 7.012327 GTCCGGAAATACTCATCATCAAAATGA 59.988 37.037 5.23 0.00 45.73 2.57
2728 5736 7.555914 TCCGGAAATACTCATCATCAAAATGAA 59.444 33.333 0.00 0.00 44.85 2.57
2729 5737 8.355169 CCGGAAATACTCATCATCAAAATGAAT 58.645 33.333 0.00 0.00 44.85 2.57
2737 5745 8.480501 ACTCATCATCAAAATGAATAAAAGGGG 58.519 33.333 0.00 0.00 44.85 4.79
2738 5746 8.606754 TCATCATCAAAATGAATAAAAGGGGA 57.393 30.769 0.00 0.00 44.85 4.81
2739 5747 9.216148 TCATCATCAAAATGAATAAAAGGGGAT 57.784 29.630 0.00 0.00 44.85 3.85
2740 5748 9.268268 CATCATCAAAATGAATAAAAGGGGATG 57.732 33.333 0.00 0.00 44.85 3.51
2741 5749 8.378115 TCATCAAAATGAATAAAAGGGGATGT 57.622 30.769 0.00 0.00 38.97 3.06
2742 5750 9.486123 TCATCAAAATGAATAAAAGGGGATGTA 57.514 29.630 0.00 0.00 38.97 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.851658 ACAAACATTTTGGCACGCTC 58.148 45.000 3.82 0.00 0.00 5.03
181 200 6.522233 TTGTGTATTCGCGTGTACTTTTAA 57.478 33.333 18.94 0.29 0.00 1.52
190 209 2.721797 GCTCAGTTTGTGTATTCGCGTG 60.722 50.000 5.77 0.00 0.00 5.34
194 213 2.159653 GGCTGCTCAGTTTGTGTATTCG 60.160 50.000 0.00 0.00 0.00 3.34
212 231 3.646637 ACAGTAAGAAACACACTAGGGCT 59.353 43.478 0.00 0.00 0.00 5.19
222 241 4.614555 CAAGTGTGCACAGTAAGAAACA 57.385 40.909 26.87 0.00 0.00 2.83
257 279 7.908601 GGTCTTCCATGTGAATACGTTTTATTC 59.091 37.037 0.00 0.00 32.37 1.75
260 285 6.469410 AGGTCTTCCATGTGAATACGTTTTA 58.531 36.000 0.00 0.00 32.37 1.52
265 290 7.658261 TCTTATAGGTCTTCCATGTGAATACG 58.342 38.462 0.00 0.00 32.37 3.06
418 476 6.564709 TTTGATCAATCTGTCTTCTGTTGG 57.435 37.500 9.40 0.00 0.00 3.77
427 485 5.758570 GCTTTTGCTTTGATCAATCTGTC 57.241 39.130 9.40 0.00 43.35 3.51
454 512 3.427098 CGGTCGACAAGATTAGCTGTACA 60.427 47.826 18.91 0.00 0.00 2.90
468 526 5.413833 AGATTTAGTAAACTCTCGGTCGACA 59.586 40.000 18.91 0.00 0.00 4.35
475 533 6.683708 GTCGACTGAGATTTAGTAAACTCTCG 59.316 42.308 8.70 18.70 37.53 4.04
502 560 9.794719 GTTCTTATTAGGGGTTTGCTATATCTT 57.205 33.333 0.00 0.00 0.00 2.40
554 614 8.483307 ACCAAATGAAAATGTGCTGATTTATC 57.517 30.769 0.00 0.00 0.00 1.75
608 670 2.080286 TCTTCTTTCCGCTCCTTTCG 57.920 50.000 0.00 0.00 0.00 3.46
650 715 1.291906 GACAACCGGGGGCATTTTG 59.708 57.895 6.32 1.14 0.00 2.44
800 907 6.826668 TCGCCTCTATTATTGGAATCTCAAA 58.173 36.000 0.00 0.00 0.00 2.69
906 1021 1.152830 AAATGTGCGGTGGAAGGGT 59.847 52.632 0.00 0.00 0.00 4.34
960 1098 1.396301 CTAAGCTAGCTTGTGTGCTGC 59.604 52.381 34.98 0.00 43.87 5.25
1173 4040 3.670625 GCCAGTGTTGTTGGAGTACATA 58.329 45.455 0.00 0.00 37.96 2.29
1399 4314 0.880278 TTCTTGTGCTGCGTCACCTC 60.880 55.000 5.81 0.00 36.17 3.85
1515 4461 7.599998 TCTTGAAGTTTAGATGGGTTAACGTAC 59.400 37.037 0.00 0.00 0.00 3.67
1516 4462 7.669427 TCTTGAAGTTTAGATGGGTTAACGTA 58.331 34.615 0.00 0.00 0.00 3.57
1517 4463 6.527423 TCTTGAAGTTTAGATGGGTTAACGT 58.473 36.000 0.00 0.00 0.00 3.99
1518 4464 7.333423 TCATCTTGAAGTTTAGATGGGTTAACG 59.667 37.037 20.19 0.00 44.98 3.18
1608 4562 1.823295 GGCCTCGATCTGGTGCTTA 59.177 57.895 0.00 0.00 0.00 3.09
1766 4741 1.085893 CTACGGTTGCATGCATGACA 58.914 50.000 30.64 22.66 0.00 3.58
1767 4742 0.248215 GCTACGGTTGCATGCATGAC 60.248 55.000 30.64 19.27 0.00 3.06
1768 4743 0.676151 TGCTACGGTTGCATGCATGA 60.676 50.000 30.64 12.48 35.31 3.07
1771 4746 1.578926 GTTGCTACGGTTGCATGCA 59.421 52.632 18.46 18.46 40.34 3.96
1772 4747 1.511887 CGTTGCTACGGTTGCATGC 60.512 57.895 17.39 11.82 43.94 4.06
1773 4748 4.743558 CGTTGCTACGGTTGCATG 57.256 55.556 17.39 9.91 43.94 4.06
1784 4759 3.191581 CCATAGGATAGATCGACGTTGCT 59.808 47.826 0.00 0.00 0.00 3.91
1785 4760 3.190744 TCCATAGGATAGATCGACGTTGC 59.809 47.826 0.00 0.00 0.00 4.17
1856 4837 4.181578 GCCGAAATTAAGAGTGCTGTAGA 58.818 43.478 0.00 0.00 0.00 2.59
1922 4907 2.096335 CGTACTATACCAGACGCACACA 59.904 50.000 0.00 0.00 0.00 3.72
1946 4931 5.293324 CACATTACACACGTACATATTGGCT 59.707 40.000 0.00 0.00 0.00 4.75
2022 5024 0.466189 AATTCCTAGCCCATGCACCG 60.466 55.000 0.00 0.00 41.13 4.94
2023 5025 2.656947 TAATTCCTAGCCCATGCACC 57.343 50.000 0.00 0.00 41.13 5.01
2024 5026 2.294512 GCTTAATTCCTAGCCCATGCAC 59.705 50.000 0.00 0.00 41.13 4.57
2029 5031 4.862641 AAGAAGCTTAATTCCTAGCCCA 57.137 40.909 0.00 0.00 38.14 5.36
2030 5032 5.531659 GGTTAAGAAGCTTAATTCCTAGCCC 59.468 44.000 0.00 0.00 38.14 5.19
2043 5045 8.389979 ACTTACCCTATAAAGGTTAAGAAGCT 57.610 34.615 13.71 0.00 46.03 3.74
2044 5046 7.714377 GGACTTACCCTATAAAGGTTAAGAAGC 59.286 40.741 13.71 4.88 46.03 3.86
2062 5068 8.561738 TTCTTGAATTGTTATCTGGACTTACC 57.438 34.615 0.00 0.00 39.54 2.85
2100 5107 7.828223 TGCTGGGAAATATTTTGTTAATGCAAT 59.172 29.630 1.43 0.00 0.00 3.56
2123 5130 7.334090 AGAACATAGACTCATGTAACATTGCT 58.666 34.615 0.00 0.00 38.19 3.91
2124 5131 7.493971 AGAGAACATAGACTCATGTAACATTGC 59.506 37.037 0.00 0.00 38.19 3.56
2133 5140 8.945481 AAGAATTGAGAGAACATAGACTCATG 57.055 34.615 0.00 0.00 38.79 3.07
2188 5195 6.376018 GGCCATATTTACAAACCACTGAGTTA 59.624 38.462 0.00 0.00 0.00 2.24
2224 5232 2.872245 CAATGCGTGGGGTATCTTGTAG 59.128 50.000 0.00 0.00 0.00 2.74
2225 5233 2.912771 CAATGCGTGGGGTATCTTGTA 58.087 47.619 0.00 0.00 0.00 2.41
2226 5234 1.750193 CAATGCGTGGGGTATCTTGT 58.250 50.000 0.00 0.00 0.00 3.16
2227 5235 0.381801 GCAATGCGTGGGGTATCTTG 59.618 55.000 0.00 0.00 0.00 3.02
2228 5236 0.034574 TGCAATGCGTGGGGTATCTT 60.035 50.000 0.00 0.00 0.00 2.40
2229 5237 0.464373 CTGCAATGCGTGGGGTATCT 60.464 55.000 0.00 0.00 0.00 1.98
2230 5238 2.024918 CTGCAATGCGTGGGGTATC 58.975 57.895 0.00 0.00 0.00 2.24
2231 5239 2.120909 GCTGCAATGCGTGGGGTAT 61.121 57.895 0.00 0.00 0.00 2.73
2232 5240 2.749839 GCTGCAATGCGTGGGGTA 60.750 61.111 0.00 0.00 0.00 3.69
2245 5253 2.276472 TATTTCACATTTGCCGCTGC 57.724 45.000 0.00 0.00 38.26 5.25
2246 5254 4.031418 TGATATTTCACATTTGCCGCTG 57.969 40.909 0.00 0.00 0.00 5.18
2247 5255 4.158394 AGTTGATATTTCACATTTGCCGCT 59.842 37.500 0.00 0.00 0.00 5.52
2248 5256 4.423732 AGTTGATATTTCACATTTGCCGC 58.576 39.130 0.00 0.00 0.00 6.53
2249 5257 8.341903 TGTATAGTTGATATTTCACATTTGCCG 58.658 33.333 0.00 0.00 0.00 5.69
2250 5258 9.450807 GTGTATAGTTGATATTTCACATTTGCC 57.549 33.333 0.00 0.00 32.54 4.52
2289 5297 8.113675 CCCGTTTAATTAGCACATTTTAATTGC 58.886 33.333 0.00 0.00 33.06 3.56
2290 5298 8.599774 CCCCGTTTAATTAGCACATTTTAATTG 58.400 33.333 0.00 0.00 33.06 2.32
2291 5299 8.532819 TCCCCGTTTAATTAGCACATTTTAATT 58.467 29.630 0.00 0.00 34.71 1.40
2292 5300 8.068892 TCCCCGTTTAATTAGCACATTTTAAT 57.931 30.769 0.00 0.00 0.00 1.40
2293 5301 7.463961 TCCCCGTTTAATTAGCACATTTTAA 57.536 32.000 0.00 0.00 0.00 1.52
2294 5302 6.404954 GCTCCCCGTTTAATTAGCACATTTTA 60.405 38.462 0.00 0.00 0.00 1.52
2295 5303 5.623596 GCTCCCCGTTTAATTAGCACATTTT 60.624 40.000 0.00 0.00 0.00 1.82
2296 5304 4.142249 GCTCCCCGTTTAATTAGCACATTT 60.142 41.667 0.00 0.00 0.00 2.32
2297 5305 3.380320 GCTCCCCGTTTAATTAGCACATT 59.620 43.478 0.00 0.00 0.00 2.71
2298 5306 2.949644 GCTCCCCGTTTAATTAGCACAT 59.050 45.455 0.00 0.00 0.00 3.21
2299 5307 2.290387 TGCTCCCCGTTTAATTAGCACA 60.290 45.455 0.00 0.00 35.20 4.57
2300 5308 2.361789 TGCTCCCCGTTTAATTAGCAC 58.638 47.619 0.00 0.00 35.20 4.40
2301 5309 2.361789 GTGCTCCCCGTTTAATTAGCA 58.638 47.619 0.00 0.00 37.62 3.49
2302 5310 1.674441 GGTGCTCCCCGTTTAATTAGC 59.326 52.381 0.00 0.00 0.00 3.09
2303 5311 2.993937 TGGTGCTCCCCGTTTAATTAG 58.006 47.619 1.59 0.00 0.00 1.73
2304 5312 3.201266 AGATGGTGCTCCCCGTTTAATTA 59.799 43.478 1.59 0.00 0.00 1.40
2305 5313 2.025321 AGATGGTGCTCCCCGTTTAATT 60.025 45.455 1.59 0.00 0.00 1.40
2306 5314 1.564348 AGATGGTGCTCCCCGTTTAAT 59.436 47.619 1.59 0.00 0.00 1.40
2307 5315 0.988832 AGATGGTGCTCCCCGTTTAA 59.011 50.000 1.59 0.00 0.00 1.52
2308 5316 0.251916 CAGATGGTGCTCCCCGTTTA 59.748 55.000 1.59 0.00 0.00 2.01
2309 5317 1.002134 CAGATGGTGCTCCCCGTTT 60.002 57.895 1.59 0.00 0.00 3.60
2310 5318 2.224159 ACAGATGGTGCTCCCCGTT 61.224 57.895 1.59 0.00 0.00 4.44
2311 5319 2.607750 ACAGATGGTGCTCCCCGT 60.608 61.111 1.59 0.00 0.00 5.28
2312 5320 2.124983 CACAGATGGTGCTCCCCG 60.125 66.667 1.59 0.00 41.36 5.73
2325 5333 1.195448 GAAACACCGTCTGATGCACAG 59.805 52.381 9.27 9.27 46.97 3.66
2326 5334 1.225855 GAAACACCGTCTGATGCACA 58.774 50.000 0.00 0.00 0.00 4.57
2327 5335 0.163788 CGAAACACCGTCTGATGCAC 59.836 55.000 0.00 0.00 0.00 4.57
2328 5336 0.032815 TCGAAACACCGTCTGATGCA 59.967 50.000 0.00 0.00 0.00 3.96
2329 5337 1.144969 TTCGAAACACCGTCTGATGC 58.855 50.000 0.00 0.00 0.00 3.91
2330 5338 5.290885 TCAATATTCGAAACACCGTCTGATG 59.709 40.000 0.00 0.00 0.00 3.07
2331 5339 5.416083 TCAATATTCGAAACACCGTCTGAT 58.584 37.500 0.00 0.00 0.00 2.90
2332 5340 4.811908 TCAATATTCGAAACACCGTCTGA 58.188 39.130 0.00 0.00 0.00 3.27
2333 5341 4.862574 TCTCAATATTCGAAACACCGTCTG 59.137 41.667 0.00 0.00 0.00 3.51
2334 5342 5.068234 TCTCAATATTCGAAACACCGTCT 57.932 39.130 0.00 0.00 0.00 4.18
2335 5343 5.773239 TTCTCAATATTCGAAACACCGTC 57.227 39.130 0.00 0.00 0.00 4.79
2336 5344 7.837202 TTATTCTCAATATTCGAAACACCGT 57.163 32.000 0.00 0.00 0.00 4.83
2337 5345 9.716507 AATTTATTCTCAATATTCGAAACACCG 57.283 29.630 0.00 0.00 0.00 4.94
2363 5371 8.198109 GCCATAGTTCTTTCAGATGACTAGTAA 58.802 37.037 0.00 0.00 0.00 2.24
2364 5372 7.561722 AGCCATAGTTCTTTCAGATGACTAGTA 59.438 37.037 0.00 0.00 0.00 1.82
2365 5373 6.382570 AGCCATAGTTCTTTCAGATGACTAGT 59.617 38.462 0.00 0.00 0.00 2.57
2366 5374 6.815089 AGCCATAGTTCTTTCAGATGACTAG 58.185 40.000 0.00 0.00 0.00 2.57
2367 5375 6.798427 AGCCATAGTTCTTTCAGATGACTA 57.202 37.500 0.00 0.00 0.00 2.59
2368 5376 5.690464 AGCCATAGTTCTTTCAGATGACT 57.310 39.130 0.00 0.00 0.00 3.41
2369 5377 9.547753 TTATTAGCCATAGTTCTTTCAGATGAC 57.452 33.333 0.00 0.00 0.00 3.06
2370 5378 9.547753 GTTATTAGCCATAGTTCTTTCAGATGA 57.452 33.333 0.00 0.00 0.00 2.92
2371 5379 9.330063 TGTTATTAGCCATAGTTCTTTCAGATG 57.670 33.333 0.00 0.00 0.00 2.90
2372 5380 9.331282 GTGTTATTAGCCATAGTTCTTTCAGAT 57.669 33.333 0.00 0.00 0.00 2.90
2373 5381 8.540388 AGTGTTATTAGCCATAGTTCTTTCAGA 58.460 33.333 0.00 0.00 0.00 3.27
2374 5382 8.607459 CAGTGTTATTAGCCATAGTTCTTTCAG 58.393 37.037 0.00 0.00 0.00 3.02
2375 5383 8.318412 TCAGTGTTATTAGCCATAGTTCTTTCA 58.682 33.333 0.00 0.00 0.00 2.69
2376 5384 8.718102 TCAGTGTTATTAGCCATAGTTCTTTC 57.282 34.615 0.00 0.00 0.00 2.62
2377 5385 8.947115 GTTCAGTGTTATTAGCCATAGTTCTTT 58.053 33.333 0.00 0.00 0.00 2.52
2378 5386 7.553044 GGTTCAGTGTTATTAGCCATAGTTCTT 59.447 37.037 0.00 0.00 0.00 2.52
2379 5387 7.048512 GGTTCAGTGTTATTAGCCATAGTTCT 58.951 38.462 0.00 0.00 0.00 3.01
2380 5388 7.048512 AGGTTCAGTGTTATTAGCCATAGTTC 58.951 38.462 0.00 0.00 0.00 3.01
2381 5389 6.958767 AGGTTCAGTGTTATTAGCCATAGTT 58.041 36.000 0.00 0.00 0.00 2.24
2382 5390 6.561519 AGGTTCAGTGTTATTAGCCATAGT 57.438 37.500 0.00 0.00 0.00 2.12
2383 5391 7.552687 TGAAAGGTTCAGTGTTATTAGCCATAG 59.447 37.037 0.00 0.00 34.08 2.23
2384 5392 7.398829 TGAAAGGTTCAGTGTTATTAGCCATA 58.601 34.615 0.00 0.00 34.08 2.74
2385 5393 6.245408 TGAAAGGTTCAGTGTTATTAGCCAT 58.755 36.000 0.00 0.00 34.08 4.40
2386 5394 5.626142 TGAAAGGTTCAGTGTTATTAGCCA 58.374 37.500 0.00 0.00 34.08 4.75
2387 5395 6.151144 ACATGAAAGGTTCAGTGTTATTAGCC 59.849 38.462 0.00 0.00 43.98 3.93
2388 5396 7.145932 ACATGAAAGGTTCAGTGTTATTAGC 57.854 36.000 0.00 0.00 43.98 3.09
2389 5397 7.390440 TGGACATGAAAGGTTCAGTGTTATTAG 59.610 37.037 0.00 0.00 43.98 1.73
2390 5398 7.227873 TGGACATGAAAGGTTCAGTGTTATTA 58.772 34.615 0.00 0.00 43.98 0.98
2391 5399 6.068010 TGGACATGAAAGGTTCAGTGTTATT 58.932 36.000 0.00 0.00 43.98 1.40
2392 5400 5.630121 TGGACATGAAAGGTTCAGTGTTAT 58.370 37.500 0.00 0.00 43.98 1.89
2393 5401 5.042463 TGGACATGAAAGGTTCAGTGTTA 57.958 39.130 0.00 0.00 43.98 2.41
2394 5402 3.897239 TGGACATGAAAGGTTCAGTGTT 58.103 40.909 0.00 0.00 43.98 3.32
2395 5403 3.576078 TGGACATGAAAGGTTCAGTGT 57.424 42.857 0.00 2.32 43.98 3.55
2396 5404 5.248640 AGTATGGACATGAAAGGTTCAGTG 58.751 41.667 0.00 0.00 40.81 3.66
2397 5405 5.505181 AGTATGGACATGAAAGGTTCAGT 57.495 39.130 0.00 0.00 40.81 3.41
2398 5406 5.939883 TGAAGTATGGACATGAAAGGTTCAG 59.060 40.000 0.00 0.00 40.81 3.02
2399 5407 5.875224 TGAAGTATGGACATGAAAGGTTCA 58.125 37.500 0.00 0.00 42.27 3.18
2400 5408 5.355350 CCTGAAGTATGGACATGAAAGGTTC 59.645 44.000 0.00 0.00 0.00 3.62
2401 5409 5.222130 ACCTGAAGTATGGACATGAAAGGTT 60.222 40.000 0.00 0.00 30.19 3.50
2402 5410 4.289672 ACCTGAAGTATGGACATGAAAGGT 59.710 41.667 0.00 0.00 0.00 3.50
2403 5411 4.848357 ACCTGAAGTATGGACATGAAAGG 58.152 43.478 0.00 0.00 0.00 3.11
2404 5412 6.540189 CCTAACCTGAAGTATGGACATGAAAG 59.460 42.308 0.00 0.00 0.00 2.62
2405 5413 6.414732 CCTAACCTGAAGTATGGACATGAAA 58.585 40.000 0.00 0.00 0.00 2.69
2406 5414 5.629133 GCCTAACCTGAAGTATGGACATGAA 60.629 44.000 0.00 0.00 0.00 2.57
2407 5415 4.141711 GCCTAACCTGAAGTATGGACATGA 60.142 45.833 0.00 0.00 0.00 3.07
2408 5416 4.130118 GCCTAACCTGAAGTATGGACATG 58.870 47.826 0.00 0.00 0.00 3.21
2409 5417 4.040755 AGCCTAACCTGAAGTATGGACAT 58.959 43.478 0.00 0.00 0.00 3.06
2410 5418 3.197766 CAGCCTAACCTGAAGTATGGACA 59.802 47.826 0.00 0.00 34.77 4.02
2411 5419 3.451178 TCAGCCTAACCTGAAGTATGGAC 59.549 47.826 0.00 0.00 38.81 4.02
2412 5420 3.719871 TCAGCCTAACCTGAAGTATGGA 58.280 45.455 0.00 0.00 38.81 3.41
2413 5421 4.487714 TTCAGCCTAACCTGAAGTATGG 57.512 45.455 0.81 0.00 44.49 2.74
2463 5471 9.985318 CACTTCTGCAAACATTTAAATTTTTGA 57.015 25.926 30.40 19.33 37.96 2.69
2464 5472 9.771915 ACACTTCTGCAAACATTTAAATTTTTG 57.228 25.926 25.35 25.35 38.46 2.44
2465 5473 9.771915 CACACTTCTGCAAACATTTAAATTTTT 57.228 25.926 6.51 6.51 0.00 1.94
2466 5474 8.945057 ACACACTTCTGCAAACATTTAAATTTT 58.055 25.926 0.00 0.00 0.00 1.82
2467 5475 8.491331 ACACACTTCTGCAAACATTTAAATTT 57.509 26.923 0.00 0.00 0.00 1.82
2468 5476 9.030301 GTACACACTTCTGCAAACATTTAAATT 57.970 29.630 0.00 0.00 0.00 1.82
2469 5477 8.194104 TGTACACACTTCTGCAAACATTTAAAT 58.806 29.630 0.00 0.00 0.00 1.40
2470 5478 7.539436 TGTACACACTTCTGCAAACATTTAAA 58.461 30.769 0.00 0.00 0.00 1.52
2471 5479 7.089770 TGTACACACTTCTGCAAACATTTAA 57.910 32.000 0.00 0.00 0.00 1.52
2472 5480 6.685527 TGTACACACTTCTGCAAACATTTA 57.314 33.333 0.00 0.00 0.00 1.40
2473 5481 5.574891 TGTACACACTTCTGCAAACATTT 57.425 34.783 0.00 0.00 0.00 2.32
2474 5482 5.574891 TTGTACACACTTCTGCAAACATT 57.425 34.783 0.00 0.00 0.00 2.71
2475 5483 5.532406 AGATTGTACACACTTCTGCAAACAT 59.468 36.000 0.00 0.00 0.00 2.71
2476 5484 4.881273 AGATTGTACACACTTCTGCAAACA 59.119 37.500 0.00 0.00 0.00 2.83
2477 5485 5.424121 AGATTGTACACACTTCTGCAAAC 57.576 39.130 0.00 0.00 0.00 2.93
2478 5486 6.521162 TCTAGATTGTACACACTTCTGCAAA 58.479 36.000 0.00 0.00 0.00 3.68
2479 5487 6.096673 TCTAGATTGTACACACTTCTGCAA 57.903 37.500 0.00 0.00 0.00 4.08
2480 5488 5.722021 TCTAGATTGTACACACTTCTGCA 57.278 39.130 0.00 0.00 0.00 4.41
2481 5489 5.926542 TGTTCTAGATTGTACACACTTCTGC 59.073 40.000 0.00 0.00 0.00 4.26
2482 5490 6.088217 CGTGTTCTAGATTGTACACACTTCTG 59.912 42.308 20.11 4.58 40.59 3.02
2483 5491 6.150318 CGTGTTCTAGATTGTACACACTTCT 58.850 40.000 20.11 0.00 40.59 2.85
2484 5492 5.919141 ACGTGTTCTAGATTGTACACACTTC 59.081 40.000 20.11 0.00 40.59 3.01
2485 5493 5.839621 ACGTGTTCTAGATTGTACACACTT 58.160 37.500 20.11 10.10 40.59 3.16
2486 5494 5.449107 ACGTGTTCTAGATTGTACACACT 57.551 39.130 20.11 0.29 40.59 3.55
2487 5495 6.520792 AAACGTGTTCTAGATTGTACACAC 57.479 37.500 20.11 16.01 40.59 3.82
2488 5496 7.650890 TCTAAACGTGTTCTAGATTGTACACA 58.349 34.615 20.11 7.27 40.59 3.72
2489 5497 8.684973 ATCTAAACGTGTTCTAGATTGTACAC 57.315 34.615 13.27 13.27 37.97 2.90
2490 5498 9.999009 CTATCTAAACGTGTTCTAGATTGTACA 57.001 33.333 15.77 0.00 34.83 2.90
2493 5501 9.570488 GTTCTATCTAAACGTGTTCTAGATTGT 57.430 33.333 15.77 0.00 34.83 2.71
2494 5502 9.569167 TGTTCTATCTAAACGTGTTCTAGATTG 57.431 33.333 15.77 14.51 34.83 2.67
2518 5526 9.353431 TGTGATGCAGGAAATATGTAAATATGT 57.647 29.630 0.00 0.00 0.00 2.29
2526 5534 9.353431 TGTTATTATGTGATGCAGGAAATATGT 57.647 29.630 0.00 0.00 0.00 2.29
2531 5539 9.368674 CATTTTGTTATTATGTGATGCAGGAAA 57.631 29.630 0.00 0.00 0.00 3.13
2532 5540 8.747471 TCATTTTGTTATTATGTGATGCAGGAA 58.253 29.630 0.00 0.00 0.00 3.36
2533 5541 8.291191 TCATTTTGTTATTATGTGATGCAGGA 57.709 30.769 0.00 0.00 0.00 3.86
2534 5542 8.929827 TTCATTTTGTTATTATGTGATGCAGG 57.070 30.769 0.00 0.00 0.00 4.85
2536 5544 9.235537 CGATTCATTTTGTTATTATGTGATGCA 57.764 29.630 0.00 0.00 0.00 3.96
2537 5545 8.209869 GCGATTCATTTTGTTATTATGTGATGC 58.790 33.333 0.00 0.00 0.00 3.91
2538 5546 9.454585 AGCGATTCATTTTGTTATTATGTGATG 57.545 29.630 0.00 0.00 0.00 3.07
2540 5548 9.288124 CAAGCGATTCATTTTGTTATTATGTGA 57.712 29.630 0.00 0.00 0.00 3.58
2541 5549 9.288124 TCAAGCGATTCATTTTGTTATTATGTG 57.712 29.630 0.00 0.00 0.00 3.21
2571 5579 5.398169 GGAATCGACACATGCATGTAAAAA 58.602 37.500 30.92 17.42 39.39 1.94
2572 5580 4.436718 CGGAATCGACACATGCATGTAAAA 60.437 41.667 30.92 17.07 37.48 1.52
2573 5581 3.063316 CGGAATCGACACATGCATGTAAA 59.937 43.478 30.92 16.74 37.48 2.01
2574 5582 2.607180 CGGAATCGACACATGCATGTAA 59.393 45.455 30.92 17.08 37.48 2.41
2575 5583 2.200899 CGGAATCGACACATGCATGTA 58.799 47.619 30.92 16.84 37.48 2.29
2576 5584 1.009078 CGGAATCGACACATGCATGT 58.991 50.000 26.61 26.61 39.20 3.21
2577 5585 0.305617 CCGGAATCGACACATGCATG 59.694 55.000 25.09 25.09 39.00 4.06
2578 5586 1.439353 GCCGGAATCGACACATGCAT 61.439 55.000 5.05 0.00 39.00 3.96
2579 5587 2.106074 GCCGGAATCGACACATGCA 61.106 57.895 5.05 0.00 39.00 3.96
2580 5588 2.709475 GCCGGAATCGACACATGC 59.291 61.111 5.05 0.00 39.00 4.06
2581 5589 2.525248 CGGCCGGAATCGACACATG 61.525 63.158 20.10 0.00 39.00 3.21
2582 5590 2.202878 CGGCCGGAATCGACACAT 60.203 61.111 20.10 0.00 39.00 3.21
2583 5591 3.636313 GACGGCCGGAATCGACACA 62.636 63.158 31.76 0.00 39.00 3.72
2584 5592 2.884207 GACGGCCGGAATCGACAC 60.884 66.667 31.76 5.04 39.00 3.67
2585 5593 3.375239 TGACGGCCGGAATCGACA 61.375 61.111 31.76 13.92 39.00 4.35
2586 5594 2.884207 GTGACGGCCGGAATCGAC 60.884 66.667 31.76 14.23 39.00 4.20
2587 5595 3.066190 AGTGACGGCCGGAATCGA 61.066 61.111 31.76 6.21 39.00 3.59
2588 5596 2.885644 CAGTGACGGCCGGAATCG 60.886 66.667 31.76 11.11 0.00 3.34
2589 5597 3.195698 GCAGTGACGGCCGGAATC 61.196 66.667 31.76 18.88 0.00 2.52
2590 5598 3.329542 ATGCAGTGACGGCCGGAAT 62.330 57.895 31.76 12.30 0.00 3.01
2591 5599 4.015406 ATGCAGTGACGGCCGGAA 62.015 61.111 31.76 14.75 0.00 4.30
2592 5600 4.758251 CATGCAGTGACGGCCGGA 62.758 66.667 31.76 13.26 0.00 5.14
2594 5602 1.089481 ATAACATGCAGTGACGGCCG 61.089 55.000 26.86 26.86 0.00 6.13
2595 5603 1.064060 GAATAACATGCAGTGACGGCC 59.936 52.381 5.06 0.00 0.00 6.13
2596 5604 1.064060 GGAATAACATGCAGTGACGGC 59.936 52.381 0.00 0.00 0.00 5.68
2597 5605 2.632377 AGGAATAACATGCAGTGACGG 58.368 47.619 0.00 0.00 0.00 4.79
2598 5606 5.351465 ACTTTAGGAATAACATGCAGTGACG 59.649 40.000 0.00 0.00 0.00 4.35
2599 5607 6.546395 CACTTTAGGAATAACATGCAGTGAC 58.454 40.000 0.00 0.00 32.52 3.67
2600 5608 5.123820 GCACTTTAGGAATAACATGCAGTGA 59.876 40.000 0.00 0.00 32.52 3.41
2601 5609 5.124457 AGCACTTTAGGAATAACATGCAGTG 59.876 40.000 0.00 0.00 34.27 3.66
2602 5610 5.256474 AGCACTTTAGGAATAACATGCAGT 58.744 37.500 0.00 0.00 34.27 4.40
2603 5611 5.824904 AGCACTTTAGGAATAACATGCAG 57.175 39.130 0.00 0.00 34.27 4.41
2604 5612 7.053498 TGATAGCACTTTAGGAATAACATGCA 58.947 34.615 0.00 0.00 34.27 3.96
2605 5613 7.496529 TGATAGCACTTTAGGAATAACATGC 57.503 36.000 0.00 0.00 0.00 4.06
2606 5614 7.579726 GCTGATAGCACTTTAGGAATAACATG 58.420 38.462 0.00 0.00 41.89 3.21
2607 5615 7.736447 GCTGATAGCACTTTAGGAATAACAT 57.264 36.000 0.00 0.00 41.89 2.71
2623 5631 1.093159 AGTTGCAAGCTGCTGATAGC 58.907 50.000 1.35 6.31 45.31 2.97
2624 5632 2.745821 TCAAGTTGCAAGCTGCTGATAG 59.254 45.455 1.35 0.00 45.31 2.08
2625 5633 2.781923 TCAAGTTGCAAGCTGCTGATA 58.218 42.857 1.35 0.00 45.31 2.15
2626 5634 1.612676 TCAAGTTGCAAGCTGCTGAT 58.387 45.000 1.35 0.00 45.31 2.90
2627 5635 1.391577 TTCAAGTTGCAAGCTGCTGA 58.608 45.000 1.35 0.00 45.31 4.26
2628 5636 2.058798 CATTCAAGTTGCAAGCTGCTG 58.941 47.619 1.35 0.00 45.31 4.41
2629 5637 1.958579 TCATTCAAGTTGCAAGCTGCT 59.041 42.857 0.00 0.00 45.31 4.24
2630 5638 2.056577 GTCATTCAAGTTGCAAGCTGC 58.943 47.619 0.00 0.00 45.29 5.25
2631 5639 3.004002 TCAGTCATTCAAGTTGCAAGCTG 59.996 43.478 0.00 0.00 0.00 4.24
2632 5640 3.004106 GTCAGTCATTCAAGTTGCAAGCT 59.996 43.478 0.00 0.00 0.00 3.74
2633 5641 3.243168 TGTCAGTCATTCAAGTTGCAAGC 60.243 43.478 0.00 0.00 0.00 4.01
2634 5642 4.556942 TGTCAGTCATTCAAGTTGCAAG 57.443 40.909 0.00 0.00 0.00 4.01
2635 5643 6.631971 TTATGTCAGTCATTCAAGTTGCAA 57.368 33.333 0.00 0.00 37.91 4.08
2636 5644 6.631971 TTTATGTCAGTCATTCAAGTTGCA 57.368 33.333 0.00 0.00 37.91 4.08
2637 5645 5.570589 GCTTTATGTCAGTCATTCAAGTTGC 59.429 40.000 0.00 0.00 37.91 4.17
2638 5646 6.072286 AGGCTTTATGTCAGTCATTCAAGTTG 60.072 38.462 0.00 0.00 37.91 3.16
2639 5647 6.006449 AGGCTTTATGTCAGTCATTCAAGTT 58.994 36.000 0.00 0.00 37.91 2.66
2640 5648 5.413833 CAGGCTTTATGTCAGTCATTCAAGT 59.586 40.000 0.00 0.00 37.91 3.16
2641 5649 5.645067 TCAGGCTTTATGTCAGTCATTCAAG 59.355 40.000 0.00 0.00 37.91 3.02
2642 5650 5.559770 TCAGGCTTTATGTCAGTCATTCAA 58.440 37.500 0.00 0.00 37.91 2.69
2643 5651 5.164620 TCAGGCTTTATGTCAGTCATTCA 57.835 39.130 0.00 0.00 37.91 2.57
2644 5652 7.792374 TTATCAGGCTTTATGTCAGTCATTC 57.208 36.000 0.00 0.00 37.91 2.67
2645 5653 8.627403 CATTTATCAGGCTTTATGTCAGTCATT 58.373 33.333 0.00 0.00 37.91 2.57
2646 5654 7.230108 CCATTTATCAGGCTTTATGTCAGTCAT 59.770 37.037 0.00 0.00 40.25 3.06
2647 5655 6.543465 CCATTTATCAGGCTTTATGTCAGTCA 59.457 38.462 0.00 0.00 0.00 3.41
2648 5656 6.963796 CCATTTATCAGGCTTTATGTCAGTC 58.036 40.000 0.00 0.00 0.00 3.51
2649 5657 6.949352 CCATTTATCAGGCTTTATGTCAGT 57.051 37.500 0.00 0.00 0.00 3.41
2673 5681 6.017109 AGTGAGTGTATACCAAGCAGTTTTTG 60.017 38.462 0.00 0.00 0.00 2.44
2674 5682 6.062095 AGTGAGTGTATACCAAGCAGTTTTT 58.938 36.000 0.00 0.00 0.00 1.94
2675 5683 5.621193 AGTGAGTGTATACCAAGCAGTTTT 58.379 37.500 0.00 0.00 0.00 2.43
2676 5684 5.228945 AGTGAGTGTATACCAAGCAGTTT 57.771 39.130 0.00 0.00 0.00 2.66
2677 5685 4.322801 GGAGTGAGTGTATACCAAGCAGTT 60.323 45.833 0.00 0.00 0.00 3.16
2678 5686 3.195825 GGAGTGAGTGTATACCAAGCAGT 59.804 47.826 0.00 0.00 0.00 4.40
2679 5687 3.735208 CGGAGTGAGTGTATACCAAGCAG 60.735 52.174 0.00 0.00 0.00 4.24
2680 5688 2.165641 CGGAGTGAGTGTATACCAAGCA 59.834 50.000 0.00 0.00 0.00 3.91
2681 5689 2.165845 ACGGAGTGAGTGTATACCAAGC 59.834 50.000 0.00 0.00 42.51 4.01
2697 5705 2.361119 TGATGAGTATTTCCGGACGGAG 59.639 50.000 13.64 0.00 46.06 4.63
2698 5706 2.380941 TGATGAGTATTTCCGGACGGA 58.619 47.619 1.83 9.76 43.52 4.69
2699 5707 2.882927 TGATGAGTATTTCCGGACGG 57.117 50.000 1.83 3.96 0.00 4.79
2700 5708 3.977427 TGATGATGAGTATTTCCGGACG 58.023 45.455 1.83 0.00 0.00 4.79
2701 5709 6.677781 TTTTGATGATGAGTATTTCCGGAC 57.322 37.500 1.83 0.00 0.00 4.79
2702 5710 7.053498 TCATTTTGATGATGAGTATTTCCGGA 58.947 34.615 0.00 0.00 0.00 5.14
2703 5711 7.263100 TCATTTTGATGATGAGTATTTCCGG 57.737 36.000 0.00 0.00 0.00 5.14
2711 5719 8.480501 CCCCTTTTATTCATTTTGATGATGAGT 58.519 33.333 0.00 0.00 35.17 3.41
2712 5720 8.698210 TCCCCTTTTATTCATTTTGATGATGAG 58.302 33.333 0.00 0.00 35.17 2.90
2713 5721 8.606754 TCCCCTTTTATTCATTTTGATGATGA 57.393 30.769 0.00 0.00 0.00 2.92
2714 5722 9.268268 CATCCCCTTTTATTCATTTTGATGATG 57.732 33.333 0.00 0.00 0.00 3.07
2715 5723 8.995577 ACATCCCCTTTTATTCATTTTGATGAT 58.004 29.630 0.00 0.00 32.39 2.45
2716 5724 8.378115 ACATCCCCTTTTATTCATTTTGATGA 57.622 30.769 0.00 0.00 32.39 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.