Multiple sequence alignment - TraesCS3B01G577400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G577400 chr3B 100.000 4820 0 0 1 4820 807350252 807355071 0.000000e+00 8901.0
1 TraesCS3B01G577400 chr7D 79.983 2413 282 84 1126 3386 554336701 554334338 0.000000e+00 1594.0
2 TraesCS3B01G577400 chr7D 95.455 132 5 1 384 515 41272221 41272351 4.890000e-50 209.0
3 TraesCS3B01G577400 chr7D 87.791 172 17 3 3420 3587 614177791 614177962 1.060000e-46 198.0
4 TraesCS3B01G577400 chr7D 80.608 263 32 14 2759 3016 4811399 4811151 8.240000e-43 185.0
5 TraesCS3B01G577400 chr3D 93.629 1036 62 2 2603 3636 600174089 600175122 0.000000e+00 1544.0
6 TraesCS3B01G577400 chr3D 92.411 896 52 3 863 1755 600172319 600173201 0.000000e+00 1264.0
7 TraesCS3B01G577400 chr3D 92.900 831 30 5 1767 2597 600173246 600174047 0.000000e+00 1181.0
8 TraesCS3B01G577400 chr3D 86.483 688 56 14 3635 4288 600175162 600175846 0.000000e+00 721.0
9 TraesCS3B01G577400 chr3D 90.129 466 38 6 4359 4820 600175845 600176306 2.480000e-167 599.0
10 TraesCS3B01G577400 chr3D 83.498 303 27 9 88 390 600171256 600171535 1.330000e-65 261.0
11 TraesCS3B01G577400 chr3D 93.571 140 8 1 387 526 283321251 283321113 1.760000e-49 207.0
12 TraesCS3B01G577400 chr3D 88.889 153 17 0 632 784 600171745 600171897 6.370000e-44 189.0
13 TraesCS3B01G577400 chr3D 81.395 172 28 3 3419 3586 511944321 511944492 2.340000e-28 137.0
14 TraesCS3B01G577400 chr7B 81.384 1445 133 55 1126 2480 600563780 600565178 0.000000e+00 1053.0
15 TraesCS3B01G577400 chr7B 80.724 773 94 23 2661 3380 600565665 600566435 7.050000e-153 551.0
16 TraesCS3B01G577400 chr7B 91.216 148 11 2 384 531 461475563 461475708 2.940000e-47 200.0
17 TraesCS3B01G577400 chr4A 75.215 581 91 31 1797 2340 738783774 738783210 4.850000e-55 226.0
18 TraesCS3B01G577400 chr4A 92.908 141 9 1 386 526 346062554 346062693 2.270000e-48 204.0
19 TraesCS3B01G577400 chr4A 73.802 626 113 37 2759 3348 738781932 738781322 2.940000e-47 200.0
20 TraesCS3B01G577400 chr5A 95.522 134 6 0 383 516 687681057 687680924 1.050000e-51 215.0
21 TraesCS3B01G577400 chr5A 90.196 51 3 2 4361 4410 12149546 12149497 1.120000e-06 65.8
22 TraesCS3B01G577400 chr2D 94.853 136 7 0 386 521 83539587 83539722 3.780000e-51 213.0
23 TraesCS3B01G577400 chr2D 93.103 145 9 1 374 518 536091165 536091022 1.360000e-50 211.0
24 TraesCS3B01G577400 chr2D 78.704 216 38 4 3419 3627 636014245 636014031 2.340000e-28 137.0
25 TraesCS3B01G577400 chr3A 92.958 142 9 1 377 518 642715807 642715947 6.320000e-49 206.0
26 TraesCS3B01G577400 chr1B 93.525 139 8 1 376 514 623731975 623732112 6.320000e-49 206.0
27 TraesCS3B01G577400 chr5D 76.344 372 61 16 1801 2151 556877410 556877045 1.780000e-39 174.0
28 TraesCS3B01G577400 chr5D 88.462 52 3 3 4360 4410 538155860 538155909 5.210000e-05 60.2
29 TraesCS3B01G577400 chr4B 85.119 168 21 2 3424 3587 147325030 147325197 8.300000e-38 169.0
30 TraesCS3B01G577400 chr4B 100.000 29 0 0 3943 3971 124017252 124017224 2.000000e-03 54.7
31 TraesCS3B01G577400 chr2B 80.751 213 37 2 3419 3627 794077275 794077063 3.860000e-36 163.0
32 TraesCS3B01G577400 chr6D 80.645 217 32 9 3420 3629 319248560 319248773 4.990000e-35 159.0
33 TraesCS3B01G577400 chr2A 80.282 213 38 2 3419 3627 761214794 761215006 1.800000e-34 158.0
34 TraesCS3B01G577400 chr5B 83.051 177 25 4 3422 3593 164582983 164582807 6.460000e-34 156.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G577400 chr3B 807350252 807355071 4819 False 8901.000000 8901 100.000000 1 4820 1 chr3B.!!$F1 4819
1 TraesCS3B01G577400 chr7D 554334338 554336701 2363 True 1594.000000 1594 79.983000 1126 3386 1 chr7D.!!$R2 2260
2 TraesCS3B01G577400 chr3D 600171256 600176306 5050 False 822.714286 1544 89.705571 88 4820 7 chr3D.!!$F2 4732
3 TraesCS3B01G577400 chr7B 600563780 600566435 2655 False 802.000000 1053 81.054000 1126 3380 2 chr7B.!!$F2 2254
4 TraesCS3B01G577400 chr4A 738781322 738783774 2452 True 213.000000 226 74.508500 1797 3348 2 chr4A.!!$R1 1551

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
581 648 0.029567 CGCTGCTAAGTACTCCCTCG 59.970 60.0 0.00 0.0 0.00 4.63 F
997 1417 0.107993 CATCCGAGCAAAGGAGAGCA 60.108 55.0 1.55 0.0 41.66 4.26 F
1116 1536 0.392327 GAAGGTGAGGAGCAAGGAGC 60.392 60.0 0.00 0.0 46.19 4.70 F
1810 2266 0.736325 GCGTGCAGACCAATACGACT 60.736 55.0 0.00 0.0 38.72 4.18 F
3396 5174 0.112218 TGGCCAACCAATAGCAGTGT 59.888 50.0 0.61 0.0 45.37 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2194 2704 0.179100 AAGATCTCGATGTGGCGGTG 60.179 55.000 0.00 0.00 0.00 4.94 R
2601 4206 1.070758 TCTTGTTCCTCACCTGCTCAC 59.929 52.381 0.00 0.00 0.00 3.51 R
2950 4692 1.227943 GCAGTGGCTGTCAGTCCAA 60.228 57.895 15.01 0.00 36.96 3.53 R
3655 5476 0.036022 AGTGCCCTTCTCAGTGCTTC 59.964 55.000 0.00 0.00 0.00 3.86 R
4660 6517 0.030638 TTTTGGCGAGCAAGTTGAGC 59.969 50.000 7.16 8.36 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.662211 TCGTAAGTAGGTGTTTTTCTTGC 57.338 39.130 0.00 0.00 39.48 4.01
24 25 4.209703 TCGTAAGTAGGTGTTTTTCTTGCG 59.790 41.667 0.00 0.00 42.28 4.85
25 26 4.025480 CGTAAGTAGGTGTTTTTCTTGCGT 60.025 41.667 0.00 0.00 38.59 5.24
26 27 5.175491 CGTAAGTAGGTGTTTTTCTTGCGTA 59.825 40.000 0.00 0.00 38.59 4.42
27 28 6.128742 CGTAAGTAGGTGTTTTTCTTGCGTAT 60.129 38.462 0.00 0.00 38.59 3.06
28 29 7.062138 CGTAAGTAGGTGTTTTTCTTGCGTATA 59.938 37.037 0.00 0.00 38.59 1.47
29 30 6.716898 AGTAGGTGTTTTTCTTGCGTATAC 57.283 37.500 0.00 0.00 0.00 1.47
30 31 6.461640 AGTAGGTGTTTTTCTTGCGTATACT 58.538 36.000 0.56 0.00 0.00 2.12
31 32 6.932960 AGTAGGTGTTTTTCTTGCGTATACTT 59.067 34.615 0.56 0.00 0.00 2.24
32 33 5.997385 AGGTGTTTTTCTTGCGTATACTTG 58.003 37.500 0.56 0.00 0.00 3.16
33 34 5.529800 AGGTGTTTTTCTTGCGTATACTTGT 59.470 36.000 0.56 0.00 0.00 3.16
34 35 5.623673 GGTGTTTTTCTTGCGTATACTTGTG 59.376 40.000 0.56 0.00 0.00 3.33
35 36 6.423862 GTGTTTTTCTTGCGTATACTTGTGA 58.576 36.000 0.56 0.00 0.00 3.58
36 37 6.573725 GTGTTTTTCTTGCGTATACTTGTGAG 59.426 38.462 0.56 0.00 0.00 3.51
37 38 5.856126 TTTTCTTGCGTATACTTGTGAGG 57.144 39.130 0.56 0.00 0.00 3.86
38 39 3.520290 TCTTGCGTATACTTGTGAGGG 57.480 47.619 0.56 0.00 0.00 4.30
39 40 3.093814 TCTTGCGTATACTTGTGAGGGA 58.906 45.455 0.56 0.00 0.00 4.20
40 41 3.512329 TCTTGCGTATACTTGTGAGGGAA 59.488 43.478 0.56 0.00 0.00 3.97
41 42 3.520290 TGCGTATACTTGTGAGGGAAG 57.480 47.619 0.56 0.00 0.00 3.46
42 43 2.167693 TGCGTATACTTGTGAGGGAAGG 59.832 50.000 0.56 0.00 0.00 3.46
43 44 2.429610 GCGTATACTTGTGAGGGAAGGA 59.570 50.000 0.56 0.00 0.00 3.36
44 45 3.118884 GCGTATACTTGTGAGGGAAGGAA 60.119 47.826 0.56 0.00 0.00 3.36
45 46 4.443034 GCGTATACTTGTGAGGGAAGGAAT 60.443 45.833 0.56 0.00 0.00 3.01
46 47 5.221382 GCGTATACTTGTGAGGGAAGGAATA 60.221 44.000 0.56 0.00 0.00 1.75
47 48 6.684613 GCGTATACTTGTGAGGGAAGGAATAA 60.685 42.308 0.56 0.00 0.00 1.40
48 49 7.270047 CGTATACTTGTGAGGGAAGGAATAAA 58.730 38.462 0.56 0.00 0.00 1.40
49 50 7.931948 CGTATACTTGTGAGGGAAGGAATAAAT 59.068 37.037 0.56 0.00 0.00 1.40
52 53 6.424032 ACTTGTGAGGGAAGGAATAAATACC 58.576 40.000 0.00 0.00 0.00 2.73
53 54 6.217693 ACTTGTGAGGGAAGGAATAAATACCT 59.782 38.462 0.00 0.00 38.23 3.08
54 55 7.404980 ACTTGTGAGGGAAGGAATAAATACCTA 59.595 37.037 0.00 0.00 35.25 3.08
55 56 7.374975 TGTGAGGGAAGGAATAAATACCTAG 57.625 40.000 0.00 0.00 35.25 3.02
56 57 7.136885 TGTGAGGGAAGGAATAAATACCTAGA 58.863 38.462 0.00 0.00 35.25 2.43
57 58 7.290248 TGTGAGGGAAGGAATAAATACCTAGAG 59.710 40.741 0.00 0.00 35.25 2.43
58 59 7.509659 GTGAGGGAAGGAATAAATACCTAGAGA 59.490 40.741 0.00 0.00 35.25 3.10
59 60 8.071854 TGAGGGAAGGAATAAATACCTAGAGAA 58.928 37.037 0.00 0.00 35.25 2.87
60 61 8.871570 AGGGAAGGAATAAATACCTAGAGAAA 57.128 34.615 0.00 0.00 35.25 2.52
61 62 9.292751 AGGGAAGGAATAAATACCTAGAGAAAA 57.707 33.333 0.00 0.00 35.25 2.29
62 63 9.916360 GGGAAGGAATAAATACCTAGAGAAAAA 57.084 33.333 0.00 0.00 35.25 1.94
81 82 5.637006 AAAAAGTGCTAACAACTGTCACA 57.363 34.783 3.80 0.00 0.00 3.58
82 83 4.616181 AAAGTGCTAACAACTGTCACAC 57.384 40.909 3.80 3.42 0.00 3.82
83 84 3.260475 AGTGCTAACAACTGTCACACA 57.740 42.857 10.57 0.00 31.55 3.72
84 85 3.605634 AGTGCTAACAACTGTCACACAA 58.394 40.909 10.57 0.00 31.55 3.33
85 86 3.623060 AGTGCTAACAACTGTCACACAAG 59.377 43.478 10.57 0.00 31.55 3.16
86 87 2.354510 TGCTAACAACTGTCACACAAGC 59.645 45.455 0.00 0.00 0.00 4.01
92 93 2.863740 CAACTGTCACACAAGCGAACTA 59.136 45.455 0.00 0.00 0.00 2.24
98 99 4.684242 TGTCACACAAGCGAACTAAGTATG 59.316 41.667 0.00 0.00 0.00 2.39
137 138 2.157668 GCGTATGTAAGAATGGCATCGG 59.842 50.000 0.00 0.00 0.00 4.18
153 154 3.496884 GCATCGGTCTTTGTTGAGTGTAA 59.503 43.478 0.00 0.00 0.00 2.41
159 160 4.035208 GGTCTTTGTTGAGTGTAACACTGG 59.965 45.833 0.00 0.00 45.44 4.00
181 182 2.950433 CGAAGCCTTTACCGAGTGTTA 58.050 47.619 0.00 0.00 0.00 2.41
184 185 4.201685 CGAAGCCTTTACCGAGTGTTATTG 60.202 45.833 0.00 0.00 0.00 1.90
188 189 3.340034 CTTTACCGAGTGTTATTGGGCA 58.660 45.455 0.00 0.00 0.00 5.36
192 193 2.491693 ACCGAGTGTTATTGGGCATTTG 59.508 45.455 0.00 0.00 0.00 2.32
193 194 2.529151 CGAGTGTTATTGGGCATTTGC 58.471 47.619 0.00 0.00 41.14 3.68
206 207 2.094675 GCATTTGCCCAGTGTCTATGT 58.905 47.619 0.00 0.00 34.31 2.29
220 221 6.649141 CAGTGTCTATGTTACTAGGCAAACAA 59.351 38.462 10.42 2.61 38.95 2.83
221 222 6.649557 AGTGTCTATGTTACTAGGCAAACAAC 59.350 38.462 10.42 6.50 38.95 3.32
222 223 6.649557 GTGTCTATGTTACTAGGCAAACAACT 59.350 38.462 10.42 0.96 38.95 3.16
223 224 6.872020 TGTCTATGTTACTAGGCAAACAACTC 59.128 38.462 10.42 4.77 38.95 3.01
224 225 6.034683 GTCTATGTTACTAGGCAAACAACTCG 59.965 42.308 10.42 2.71 38.95 4.18
227 228 5.302360 TGTTACTAGGCAAACAACTCGATT 58.698 37.500 5.42 0.00 32.86 3.34
228 229 5.407387 TGTTACTAGGCAAACAACTCGATTC 59.593 40.000 5.42 0.00 32.86 2.52
229 230 3.335579 ACTAGGCAAACAACTCGATTCC 58.664 45.455 0.00 0.00 0.00 3.01
230 231 2.270352 AGGCAAACAACTCGATTCCA 57.730 45.000 0.00 0.00 0.00 3.53
231 232 2.154462 AGGCAAACAACTCGATTCCAG 58.846 47.619 0.00 0.00 0.00 3.86
232 233 1.880027 GGCAAACAACTCGATTCCAGT 59.120 47.619 0.00 0.00 0.00 4.00
233 234 3.071479 GGCAAACAACTCGATTCCAGTA 58.929 45.455 0.00 0.00 0.00 2.74
234 235 3.125316 GGCAAACAACTCGATTCCAGTAG 59.875 47.826 0.00 0.00 0.00 2.57
235 236 3.746492 GCAAACAACTCGATTCCAGTAGT 59.254 43.478 0.00 0.00 0.00 2.73
236 237 4.377431 GCAAACAACTCGATTCCAGTAGTG 60.377 45.833 0.00 0.00 0.00 2.74
237 238 4.602340 AACAACTCGATTCCAGTAGTGT 57.398 40.909 0.00 0.00 0.00 3.55
238 239 5.717078 AACAACTCGATTCCAGTAGTGTA 57.283 39.130 0.00 0.00 0.00 2.90
239 240 5.916661 ACAACTCGATTCCAGTAGTGTAT 57.083 39.130 0.00 0.00 0.00 2.29
240 241 5.892568 ACAACTCGATTCCAGTAGTGTATC 58.107 41.667 0.00 0.00 0.00 2.24
241 242 5.163540 ACAACTCGATTCCAGTAGTGTATCC 60.164 44.000 0.00 0.00 0.00 2.59
242 243 3.890147 ACTCGATTCCAGTAGTGTATCCC 59.110 47.826 0.00 0.00 0.00 3.85
243 244 2.882761 TCGATTCCAGTAGTGTATCCCG 59.117 50.000 0.00 0.00 0.00 5.14
244 245 2.882761 CGATTCCAGTAGTGTATCCCGA 59.117 50.000 0.00 0.00 0.00 5.14
245 246 3.058155 CGATTCCAGTAGTGTATCCCGAG 60.058 52.174 0.00 0.00 0.00 4.63
246 247 3.377253 TTCCAGTAGTGTATCCCGAGT 57.623 47.619 0.00 0.00 0.00 4.18
247 248 3.377253 TCCAGTAGTGTATCCCGAGTT 57.623 47.619 0.00 0.00 0.00 3.01
248 249 4.508551 TCCAGTAGTGTATCCCGAGTTA 57.491 45.455 0.00 0.00 0.00 2.24
249 250 5.057843 TCCAGTAGTGTATCCCGAGTTAT 57.942 43.478 0.00 0.00 0.00 1.89
250 251 5.068636 TCCAGTAGTGTATCCCGAGTTATC 58.931 45.833 0.00 0.00 0.00 1.75
265 266 3.614092 AGTTATCCAAGTCCACATGCAG 58.386 45.455 0.00 0.00 0.00 4.41
274 275 0.321475 TCCACATGCAGATCACGCAA 60.321 50.000 13.09 0.00 43.84 4.85
296 297 3.981212 TGATCCTAGATATCGGATGGCA 58.019 45.455 14.76 6.83 40.03 4.92
298 299 4.964897 TGATCCTAGATATCGGATGGCATT 59.035 41.667 14.76 0.00 40.03 3.56
316 317 9.732130 GATGGCATTAGAAGACTAAAAGGATAT 57.268 33.333 0.00 0.00 41.15 1.63
319 320 8.994170 GGCATTAGAAGACTAAAAGGATATGAC 58.006 37.037 0.00 0.00 41.15 3.06
359 360 7.921041 TGATCTAGTTGGATCTTGAAGGTAT 57.079 36.000 6.97 0.00 41.72 2.73
375 376 5.066764 TGAAGGTATCACATCACATGCAATG 59.933 40.000 0.00 6.41 41.36 2.82
391 392 7.225523 CATGCAATGCAAATTTAACTACTCC 57.774 36.000 13.45 0.00 43.62 3.85
392 393 5.719173 TGCAATGCAAATTTAACTACTCCC 58.281 37.500 5.01 0.00 34.76 4.30
394 395 6.036470 GCAATGCAAATTTAACTACTCCCTC 58.964 40.000 0.00 0.00 0.00 4.30
395 396 6.564328 CAATGCAAATTTAACTACTCCCTCC 58.436 40.000 0.00 0.00 0.00 4.30
397 398 4.259356 GCAAATTTAACTACTCCCTCCGT 58.741 43.478 0.00 0.00 0.00 4.69
398 399 4.698780 GCAAATTTAACTACTCCCTCCGTT 59.301 41.667 0.00 0.00 0.00 4.44
468 532 6.460781 ACTAAAACGTGACTTGATACATCCA 58.539 36.000 0.00 0.00 0.00 3.41
472 536 8.506168 AAAACGTGACTTGATACATCCATATT 57.494 30.769 0.00 0.00 0.00 1.28
475 539 8.818141 ACGTGACTTGATACATCCATATTTAG 57.182 34.615 0.00 0.00 0.00 1.85
477 541 8.916654 CGTGACTTGATACATCCATATTTAGAC 58.083 37.037 0.00 0.00 0.00 2.59
503 570 9.323985 CAAATCTAAAACAAGAATTTTGGGACA 57.676 29.630 5.68 0.00 33.80 4.02
506 573 8.477419 TCTAAAACAAGAATTTTGGGACAGAT 57.523 30.769 5.68 0.00 42.39 2.90
509 576 4.739793 ACAAGAATTTTGGGACAGATGGA 58.260 39.130 5.68 0.00 42.39 3.41
510 577 4.768968 ACAAGAATTTTGGGACAGATGGAG 59.231 41.667 5.68 0.00 42.39 3.86
511 578 4.664688 AGAATTTTGGGACAGATGGAGT 57.335 40.909 0.00 0.00 42.39 3.85
512 579 5.779241 AGAATTTTGGGACAGATGGAGTA 57.221 39.130 0.00 0.00 42.39 2.59
513 580 5.501156 AGAATTTTGGGACAGATGGAGTAC 58.499 41.667 0.00 0.00 42.39 2.73
514 581 5.251700 AGAATTTTGGGACAGATGGAGTACT 59.748 40.000 0.00 0.00 42.39 2.73
515 582 4.993705 TTTTGGGACAGATGGAGTACTT 57.006 40.909 0.00 0.00 42.39 2.24
516 583 3.981071 TTGGGACAGATGGAGTACTTG 57.019 47.619 0.00 0.00 42.39 3.16
517 584 2.902608 TGGGACAGATGGAGTACTTGT 58.097 47.619 0.00 0.00 0.00 3.16
518 585 3.248024 TGGGACAGATGGAGTACTTGTT 58.752 45.455 0.00 0.00 0.00 2.83
519 586 3.650942 TGGGACAGATGGAGTACTTGTTT 59.349 43.478 0.00 0.00 0.00 2.83
520 587 4.841813 TGGGACAGATGGAGTACTTGTTTA 59.158 41.667 0.00 0.00 0.00 2.01
521 588 5.046591 TGGGACAGATGGAGTACTTGTTTAG 60.047 44.000 0.00 0.00 0.00 1.85
522 589 5.420409 GGACAGATGGAGTACTTGTTTAGG 58.580 45.833 0.00 0.00 0.00 2.69
523 590 5.420409 GACAGATGGAGTACTTGTTTAGGG 58.580 45.833 0.00 0.00 0.00 3.53
524 591 4.192317 CAGATGGAGTACTTGTTTAGGGC 58.808 47.826 0.00 0.00 0.00 5.19
525 592 3.844211 AGATGGAGTACTTGTTTAGGGCA 59.156 43.478 0.00 0.00 0.00 5.36
526 593 4.288626 AGATGGAGTACTTGTTTAGGGCAA 59.711 41.667 0.00 0.00 0.00 4.52
527 594 3.746940 TGGAGTACTTGTTTAGGGCAAC 58.253 45.455 0.00 0.00 0.00 4.17
541 608 1.177401 GGCAACCAAGAAAGCCTAGG 58.823 55.000 3.67 3.67 43.70 3.02
542 609 1.177401 GCAACCAAGAAAGCCTAGGG 58.823 55.000 11.72 0.00 0.00 3.53
543 610 1.271926 GCAACCAAGAAAGCCTAGGGA 60.272 52.381 11.72 0.00 0.00 4.20
544 611 2.621668 GCAACCAAGAAAGCCTAGGGAT 60.622 50.000 11.72 0.00 0.00 3.85
545 612 3.019564 CAACCAAGAAAGCCTAGGGATG 58.980 50.000 11.72 0.00 0.00 3.51
546 613 2.279173 ACCAAGAAAGCCTAGGGATGT 58.721 47.619 11.72 0.00 0.00 3.06
547 614 2.239907 ACCAAGAAAGCCTAGGGATGTC 59.760 50.000 11.72 0.00 0.00 3.06
548 615 2.239654 CCAAGAAAGCCTAGGGATGTCA 59.760 50.000 11.72 0.00 0.00 3.58
549 616 3.274288 CAAGAAAGCCTAGGGATGTCAC 58.726 50.000 11.72 0.00 0.00 3.67
550 617 1.840635 AGAAAGCCTAGGGATGTCACC 59.159 52.381 11.72 0.00 0.00 4.02
551 618 1.559682 GAAAGCCTAGGGATGTCACCA 59.440 52.381 11.72 0.00 0.00 4.17
552 619 1.898863 AAGCCTAGGGATGTCACCAT 58.101 50.000 11.72 0.00 0.00 3.55
553 620 1.428869 AGCCTAGGGATGTCACCATC 58.571 55.000 11.72 0.00 45.65 3.51
572 639 2.432628 GGTGACGCGCTGCTAAGT 60.433 61.111 5.73 0.00 0.00 2.24
573 640 1.153901 GGTGACGCGCTGCTAAGTA 60.154 57.895 5.73 0.00 0.00 2.24
574 641 1.411493 GGTGACGCGCTGCTAAGTAC 61.411 60.000 5.73 0.00 0.00 2.73
575 642 0.456312 GTGACGCGCTGCTAAGTACT 60.456 55.000 5.73 0.00 0.00 2.73
576 643 0.179171 TGACGCGCTGCTAAGTACTC 60.179 55.000 5.73 0.00 0.00 2.59
577 644 0.866483 GACGCGCTGCTAAGTACTCC 60.866 60.000 5.73 0.00 0.00 3.85
578 645 1.589196 CGCGCTGCTAAGTACTCCC 60.589 63.158 5.56 0.00 0.00 4.30
579 646 1.817209 GCGCTGCTAAGTACTCCCT 59.183 57.895 0.00 0.00 0.00 4.20
580 647 0.249114 GCGCTGCTAAGTACTCCCTC 60.249 60.000 0.00 0.00 0.00 4.30
581 648 0.029567 CGCTGCTAAGTACTCCCTCG 59.970 60.000 0.00 0.00 0.00 4.63
582 649 0.249114 GCTGCTAAGTACTCCCTCGC 60.249 60.000 0.00 0.00 0.00 5.03
583 650 1.394618 CTGCTAAGTACTCCCTCGCT 58.605 55.000 0.00 0.00 0.00 4.93
584 651 1.751924 CTGCTAAGTACTCCCTCGCTT 59.248 52.381 0.00 0.00 0.00 4.68
585 652 1.476891 TGCTAAGTACTCCCTCGCTTG 59.523 52.381 0.00 0.00 0.00 4.01
586 653 1.749634 GCTAAGTACTCCCTCGCTTGA 59.250 52.381 0.00 0.00 0.00 3.02
587 654 2.165845 GCTAAGTACTCCCTCGCTTGAA 59.834 50.000 0.00 0.00 0.00 2.69
588 655 3.368116 GCTAAGTACTCCCTCGCTTGAAA 60.368 47.826 0.00 0.00 0.00 2.69
589 656 3.764237 AAGTACTCCCTCGCTTGAAAA 57.236 42.857 0.00 0.00 0.00 2.29
590 657 3.764237 AGTACTCCCTCGCTTGAAAAA 57.236 42.857 0.00 0.00 0.00 1.94
708 782 2.024273 ACGAAGAGGACATAAGAGGGGA 60.024 50.000 0.00 0.00 0.00 4.81
719 793 6.183361 GGACATAAGAGGGGAGTAATTTGGAT 60.183 42.308 0.00 0.00 0.00 3.41
749 823 2.228822 GTGTGGTTCGCTCCATTTGATT 59.771 45.455 2.07 0.00 39.81 2.57
750 824 2.487762 TGTGGTTCGCTCCATTTGATTC 59.512 45.455 2.07 0.00 39.81 2.52
755 829 3.280197 TCGCTCCATTTGATTCCATCA 57.720 42.857 0.00 0.00 37.55 3.07
761 835 5.585820 TCCATTTGATTCCATCATGTGTG 57.414 39.130 0.00 0.00 39.39 3.82
786 860 8.832521 TGGAACACTACAAAATTAGTACACAAG 58.167 33.333 0.00 0.00 30.76 3.16
787 861 8.833493 GGAACACTACAAAATTAGTACACAAGT 58.167 33.333 0.00 0.00 30.76 3.16
798 872 9.569122 AAATTAGTACACAAGTATGAACAACCT 57.431 29.630 0.00 0.00 31.84 3.50
800 874 6.169557 AGTACACAAGTATGAACAACCTCA 57.830 37.500 0.00 0.00 31.84 3.86
803 877 8.372459 AGTACACAAGTATGAACAACCTCAATA 58.628 33.333 0.00 0.00 31.84 1.90
805 879 7.871853 ACACAAGTATGAACAACCTCAATAAC 58.128 34.615 0.00 0.00 0.00 1.89
808 919 9.787435 ACAAGTATGAACAACCTCAATAACTAA 57.213 29.630 0.00 0.00 0.00 2.24
834 945 8.696043 TTAATTCATAATAGCTGAATGCCAGT 57.304 30.769 0.00 0.00 41.33 4.00
836 947 4.309933 TCATAATAGCTGAATGCCAGTCG 58.690 43.478 0.00 0.00 44.71 4.18
837 948 2.988010 AATAGCTGAATGCCAGTCGA 57.012 45.000 0.00 0.00 44.71 4.20
838 949 2.231215 ATAGCTGAATGCCAGTCGAC 57.769 50.000 7.70 7.70 44.71 4.20
839 950 1.186200 TAGCTGAATGCCAGTCGACT 58.814 50.000 13.58 13.58 44.71 4.18
840 951 0.390866 AGCTGAATGCCAGTCGACTG 60.391 55.000 33.87 33.87 44.71 3.51
852 1269 1.064906 AGTCGACTGGATTACGAGGGA 60.065 52.381 19.30 0.00 36.74 4.20
854 1271 2.361438 GTCGACTGGATTACGAGGGAAT 59.639 50.000 8.70 0.00 36.74 3.01
858 1275 4.372656 GACTGGATTACGAGGGAATGAAG 58.627 47.826 0.00 0.00 0.00 3.02
860 1277 2.438021 TGGATTACGAGGGAATGAAGGG 59.562 50.000 0.00 0.00 0.00 3.95
861 1278 2.224548 GGATTACGAGGGAATGAAGGGG 60.225 54.545 0.00 0.00 0.00 4.79
872 1289 0.627986 ATGAAGGGGAAGGAAGGCTG 59.372 55.000 0.00 0.00 0.00 4.85
925 1345 1.581934 GCAACTGACATATAGCGCCA 58.418 50.000 2.29 0.00 0.00 5.69
926 1346 1.939934 GCAACTGACATATAGCGCCAA 59.060 47.619 2.29 0.00 0.00 4.52
938 1358 8.742554 ACATATAGCGCCAAAATTAATTAAGC 57.257 30.769 2.29 4.28 0.00 3.09
944 1364 5.115622 GCGCCAAAATTAATTAAGCGAGATC 59.884 40.000 28.84 15.60 42.25 2.75
946 1366 6.358030 CGCCAAAATTAATTAAGCGAGATCTG 59.642 38.462 24.06 0.00 42.25 2.90
951 1371 7.736447 AATTAATTAAGCGAGATCTGGAAGG 57.264 36.000 9.17 0.00 0.00 3.46
952 1372 4.762289 AATTAAGCGAGATCTGGAAGGT 57.238 40.909 9.17 0.00 0.00 3.50
989 1409 2.751436 GGCAGGCATCCGAGCAAA 60.751 61.111 0.00 0.00 35.83 3.68
990 1410 2.768492 GGCAGGCATCCGAGCAAAG 61.768 63.158 0.00 0.00 35.83 2.77
991 1411 2.768492 GCAGGCATCCGAGCAAAGG 61.768 63.158 0.00 0.00 35.83 3.11
992 1412 1.078214 CAGGCATCCGAGCAAAGGA 60.078 57.895 0.00 0.00 42.69 3.36
993 1413 1.094073 CAGGCATCCGAGCAAAGGAG 61.094 60.000 1.55 0.00 41.66 3.69
994 1414 1.221840 GGCATCCGAGCAAAGGAGA 59.778 57.895 1.55 0.00 41.66 3.71
995 1415 0.813210 GGCATCCGAGCAAAGGAGAG 60.813 60.000 1.55 0.00 41.66 3.20
996 1416 1.435408 GCATCCGAGCAAAGGAGAGC 61.435 60.000 1.55 4.40 41.66 4.09
997 1417 0.107993 CATCCGAGCAAAGGAGAGCA 60.108 55.000 1.55 0.00 41.66 4.26
1000 1420 1.004560 CGAGCAAAGGAGAGCACCA 60.005 57.895 0.00 0.00 0.00 4.17
1011 1431 2.165437 GGAGAGCACCAAAACACAAACA 59.835 45.455 0.00 0.00 0.00 2.83
1022 1442 6.038714 ACCAAAACACAAACACAAACACAAAT 59.961 30.769 0.00 0.00 0.00 2.32
1035 1455 7.147742 ACACAAACACAAATCCCAAGAAGTATT 60.148 33.333 0.00 0.00 0.00 1.89
1055 1475 6.820656 AGTATTCATCATGAGAGACCACAAAC 59.179 38.462 0.09 0.00 0.00 2.93
1116 1536 0.392327 GAAGGTGAGGAGCAAGGAGC 60.392 60.000 0.00 0.00 46.19 4.70
1209 1629 2.125350 CCTCTTCTCGTGCCCAGC 60.125 66.667 0.00 0.00 0.00 4.85
1340 1760 1.219393 CTGGCCGAGAAGAAGGACC 59.781 63.158 0.00 0.00 33.63 4.46
1441 1861 2.741092 GACAACGGCCTGGAGACA 59.259 61.111 0.00 0.00 39.59 3.41
1480 1900 1.961277 CACAGGCGACAAGACCACC 60.961 63.158 0.00 0.00 0.00 4.61
1755 2178 8.766151 TGCTCTCTCATATCGTATTCGTATATC 58.234 37.037 0.00 0.00 38.33 1.63
1756 2179 8.766151 GCTCTCTCATATCGTATTCGTATATCA 58.234 37.037 0.00 0.00 38.33 2.15
1758 2181 9.819267 TCTCTCATATCGTATTCGTATATCACT 57.181 33.333 0.00 0.00 38.33 3.41
1760 2183 9.043079 TCTCATATCGTATTCGTATATCACTCC 57.957 37.037 0.00 0.00 38.33 3.85
1761 2184 7.848491 TCATATCGTATTCGTATATCACTCCG 58.152 38.462 0.00 0.00 38.33 4.63
1762 2185 7.707893 TCATATCGTATTCGTATATCACTCCGA 59.292 37.037 0.00 0.00 38.33 4.55
1764 2187 4.090498 TCGTATTCGTATATCACTCCGACG 59.910 45.833 0.00 0.00 38.33 5.12
1765 2188 3.826236 ATTCGTATATCACTCCGACGG 57.174 47.619 7.84 7.84 34.38 4.79
1787 2243 2.046892 ACGCGGCTGATGCTTCTT 60.047 55.556 12.47 0.00 39.59 2.52
1810 2266 0.736325 GCGTGCAGACCAATACGACT 60.736 55.000 0.00 0.00 38.72 4.18
2026 2494 2.346365 GGGTCGACACCAAGGACC 59.654 66.667 18.91 2.44 45.94 4.46
2080 2572 1.705002 CCTCACCACCAAGGACACCA 61.705 60.000 0.00 0.00 41.22 4.17
2194 2704 2.684843 CGCACAAGGAAGGAGCAGC 61.685 63.158 0.00 0.00 0.00 5.25
2286 2814 2.592993 GGCAGACCACTACAGCCCA 61.593 63.158 0.00 0.00 39.42 5.36
2298 2826 1.522355 CAGCCCATTCGTGCTCGAT 60.522 57.895 12.14 0.00 45.65 3.59
2340 2868 3.470567 CGCTGCAGAACCGACGAC 61.471 66.667 20.43 0.00 0.00 4.34
2378 3754 1.406614 CGCTGATCCCAAGAAGAAGCT 60.407 52.381 0.00 0.00 0.00 3.74
2381 3757 3.533547 CTGATCCCAAGAAGAAGCTGAG 58.466 50.000 0.00 0.00 0.00 3.35
2382 3758 2.909006 TGATCCCAAGAAGAAGCTGAGT 59.091 45.455 0.00 0.00 0.00 3.41
2383 3759 4.096681 TGATCCCAAGAAGAAGCTGAGTA 58.903 43.478 0.00 0.00 0.00 2.59
2384 3760 4.161189 TGATCCCAAGAAGAAGCTGAGTAG 59.839 45.833 0.00 0.00 0.00 2.57
3032 4795 1.898902 CGATAGGGACATCCTCGACT 58.101 55.000 2.70 0.00 44.06 4.18
3033 4796 1.807742 CGATAGGGACATCCTCGACTC 59.192 57.143 2.70 0.00 44.06 3.36
3034 4797 2.164338 GATAGGGACATCCTCGACTCC 58.836 57.143 0.00 0.00 44.06 3.85
3040 4806 4.816984 ATCCTCGACTCCGCCGGT 62.817 66.667 1.63 0.00 35.37 5.28
3075 4841 4.189188 CGTCCTAGCCACCGACCG 62.189 72.222 0.00 0.00 0.00 4.79
3104 4882 4.408821 TGCGGGTCATGTCCCTGC 62.409 66.667 25.74 25.74 44.95 4.85
3149 4927 2.750237 GCCCGGACATGGACAACC 60.750 66.667 0.73 0.00 0.00 3.77
3154 4932 1.014044 CGGACATGGACAACCTCGTG 61.014 60.000 0.00 0.00 37.04 4.35
3202 4980 3.311110 GACCCGGTGTCTCTGCCA 61.311 66.667 13.87 0.00 41.03 4.92
3217 4995 2.025605 TCTGCCAATCTTCATTGCCTCT 60.026 45.455 0.00 0.00 38.53 3.69
3219 4997 1.407979 GCCAATCTTCATTGCCTCTGG 59.592 52.381 0.00 0.00 38.53 3.86
3339 5117 1.405821 CTACGAGTACTCCAAGCCCAG 59.594 57.143 17.23 3.13 0.00 4.45
3370 5148 2.302587 ATTTTGGTGACGACCCCAAT 57.697 45.000 2.49 0.00 42.34 3.16
3396 5174 0.112218 TGGCCAACCAATAGCAGTGT 59.888 50.000 0.61 0.00 45.37 3.55
3455 5233 1.134670 GGTGCTTAGGTGAGGTGCTAG 60.135 57.143 0.00 0.00 0.00 3.42
3478 5256 4.320275 GGTGCACTAAAAGTCTTAGCAACC 60.320 45.833 17.98 0.00 32.42 3.77
3487 5265 2.093447 AGTCTTAGCAACCAATCTCCCG 60.093 50.000 0.00 0.00 0.00 5.14
3575 5353 8.774546 TTATCCATTGGTTGATAGGCATTTTA 57.225 30.769 1.86 0.00 0.00 1.52
3576 5354 6.463995 TCCATTGGTTGATAGGCATTTTAC 57.536 37.500 1.86 0.00 0.00 2.01
3593 5371 2.665649 TACGTAGGTCCACATGCTTG 57.334 50.000 0.00 0.00 0.00 4.01
3610 5388 5.833406 TGCTTGACATTGTTTCTTCTTCA 57.167 34.783 0.00 0.00 0.00 3.02
3629 5407 2.634453 TCAGATCACCAAAGTGCTCTCA 59.366 45.455 0.00 0.00 44.23 3.27
3631 5409 3.622163 CAGATCACCAAAGTGCTCTCATC 59.378 47.826 0.00 0.00 44.23 2.92
3632 5410 2.084610 TCACCAAAGTGCTCTCATCG 57.915 50.000 0.00 0.00 44.16 3.84
3707 5528 4.106019 ACCCCTATACAGGAGTACTACCAG 59.894 50.000 0.00 2.11 45.91 4.00
3710 5531 5.398809 CCCTATACAGGAGTACTACCAGTGT 60.399 48.000 0.00 2.44 45.91 3.55
3728 5549 5.102313 CAGTGTTGTCCTTTTCTGTTTTCC 58.898 41.667 0.00 0.00 0.00 3.13
3745 5566 7.511028 TCTGTTTTCCATAAATAAAGGGGTGTT 59.489 33.333 0.00 0.00 0.00 3.32
3794 5615 6.406512 GGGTTTTAATTCAGTGTTGACCAACT 60.407 38.462 13.26 0.00 41.67 3.16
3827 5648 7.923414 AAATGAGTCATACCTGTTAGGAAAC 57.077 36.000 5.94 0.00 37.67 2.78
3828 5649 5.416271 TGAGTCATACCTGTTAGGAAACC 57.584 43.478 1.13 0.00 37.67 3.27
3841 5662 2.108970 AGGAAACCGACTCCACCTATC 58.891 52.381 0.00 0.00 35.20 2.08
3863 5686 0.397254 AGGTACAGCCGGCTCTACAT 60.397 55.000 33.79 28.11 43.70 2.29
3865 5688 0.744874 GTACAGCCGGCTCTACATGA 59.255 55.000 30.15 8.80 0.00 3.07
3872 5695 2.905075 CCGGCTCTACATGATGTTTCA 58.095 47.619 2.29 0.00 36.00 2.69
3918 5742 6.468000 GTCTAACATAAAAGGTACGCAATTGC 59.532 38.462 20.76 20.76 37.78 3.56
3926 5750 2.089201 GGTACGCAATTGCCTTAACCT 58.911 47.619 24.24 1.47 37.91 3.50
3959 5783 7.765695 TCATCTCTATATGCACATACACTCA 57.234 36.000 0.00 0.00 0.00 3.41
3963 5787 6.207614 TCTCTATATGCACATACACTCACCTC 59.792 42.308 0.00 0.00 0.00 3.85
3970 5794 4.806247 GCACATACACTCACCTCTATGAAC 59.194 45.833 0.00 0.00 0.00 3.18
3971 5795 5.394663 GCACATACACTCACCTCTATGAACT 60.395 44.000 0.00 0.00 0.00 3.01
3973 5797 3.601443 ACACTCACCTCTATGAACTGC 57.399 47.619 0.00 0.00 0.00 4.40
4021 5845 6.860034 TCTATAAATAGAGCACCACCCTAGA 58.140 40.000 0.00 0.00 34.63 2.43
4025 5849 0.618680 AGAGCACCACCCTAGATGCA 60.619 55.000 0.00 0.00 40.63 3.96
4038 5862 7.230712 CCACCCTAGATGCATACGTATATCATA 59.769 40.741 16.81 8.27 0.00 2.15
4069 5893 9.733556 TTATCTCCTTTACTTCTGTGCATTTTA 57.266 29.630 0.00 0.00 0.00 1.52
4082 5921 1.133025 GCATTTTATGGCAGCACGACT 59.867 47.619 0.00 0.00 0.00 4.18
4086 5925 0.613260 TTATGGCAGCACGACTTCCT 59.387 50.000 0.00 0.00 32.01 3.36
4087 5926 0.108186 TATGGCAGCACGACTTCCTG 60.108 55.000 0.00 0.00 32.01 3.86
4097 5936 0.037605 CGACTTCCTGCCGGTTACTT 60.038 55.000 1.90 0.00 0.00 2.24
4105 5944 4.506758 TCCTGCCGGTTACTTAACAATAC 58.493 43.478 1.90 0.00 37.92 1.89
4106 5945 4.020396 TCCTGCCGGTTACTTAACAATACA 60.020 41.667 1.90 0.00 37.92 2.29
4120 5959 9.716531 ACTTAACAATACAAAACTAGTCTACCC 57.283 33.333 0.00 0.00 0.00 3.69
4121 5960 8.761575 TTAACAATACAAAACTAGTCTACCCG 57.238 34.615 0.00 0.00 0.00 5.28
4130 5970 3.771216 ACTAGTCTACCCGAAACTGGAA 58.229 45.455 0.00 0.00 0.00 3.53
4131 5971 4.154942 ACTAGTCTACCCGAAACTGGAAA 58.845 43.478 0.00 0.00 0.00 3.13
4136 5976 5.472478 AGTCTACCCGAAACTGGAAATTTTC 59.528 40.000 0.24 0.24 0.00 2.29
4143 5983 6.536941 CCCGAAACTGGAAATTTTCAGAAAAA 59.463 34.615 29.46 0.00 38.66 1.94
4181 6028 2.201732 GTGTCCTACACCATGCATACG 58.798 52.381 0.00 0.00 43.05 3.06
4185 6032 1.220529 CTACACCATGCATACGCCAG 58.779 55.000 0.00 0.00 37.32 4.85
4189 6036 0.106708 ACCATGCATACGCCAGTAGG 59.893 55.000 0.00 0.00 37.65 3.18
4234 6089 1.538876 TGTAGCAGGCTCCCCTTGT 60.539 57.895 0.00 0.00 40.33 3.16
4243 6098 3.003173 TCCCCTTGTCTGCCCTCG 61.003 66.667 0.00 0.00 0.00 4.63
4246 6101 2.125350 CCTTGTCTGCCCTCGCTC 60.125 66.667 0.00 0.00 35.36 5.03
4250 6105 4.500116 GTCTGCCCTCGCTCCGTC 62.500 72.222 0.00 0.00 35.36 4.79
4251 6106 4.742649 TCTGCCCTCGCTCCGTCT 62.743 66.667 0.00 0.00 35.36 4.18
4266 6121 3.068691 TCTCCAAGGGGCGACTCG 61.069 66.667 0.00 0.00 34.16 4.18
4288 6143 0.038166 TGGATCCCAGTCTTGCCAAC 59.962 55.000 9.90 0.00 0.00 3.77
4289 6144 0.681243 GGATCCCAGTCTTGCCAACC 60.681 60.000 0.00 0.00 0.00 3.77
4290 6145 0.681243 GATCCCAGTCTTGCCAACCC 60.681 60.000 0.00 0.00 0.00 4.11
4291 6146 2.155197 ATCCCAGTCTTGCCAACCCC 62.155 60.000 0.00 0.00 0.00 4.95
4292 6147 2.672996 CCAGTCTTGCCAACCCCG 60.673 66.667 0.00 0.00 0.00 5.73
4293 6148 3.365265 CAGTCTTGCCAACCCCGC 61.365 66.667 0.00 0.00 0.00 6.13
4294 6149 4.660938 AGTCTTGCCAACCCCGCC 62.661 66.667 0.00 0.00 0.00 6.13
4308 6163 4.778143 CGCCCCCGTTCCTCCTTG 62.778 72.222 0.00 0.00 0.00 3.61
4310 6165 3.330720 CCCCCGTTCCTCCTTGCT 61.331 66.667 0.00 0.00 0.00 3.91
4311 6166 1.993391 CCCCCGTTCCTCCTTGCTA 60.993 63.158 0.00 0.00 0.00 3.49
4312 6167 1.345715 CCCCCGTTCCTCCTTGCTAT 61.346 60.000 0.00 0.00 0.00 2.97
4313 6168 0.106894 CCCCGTTCCTCCTTGCTATC 59.893 60.000 0.00 0.00 0.00 2.08
4314 6169 0.249489 CCCGTTCCTCCTTGCTATCG 60.249 60.000 0.00 0.00 0.00 2.92
4315 6170 0.460311 CCGTTCCTCCTTGCTATCGT 59.540 55.000 0.00 0.00 0.00 3.73
4316 6171 1.536284 CCGTTCCTCCTTGCTATCGTC 60.536 57.143 0.00 0.00 0.00 4.20
4317 6172 1.841450 GTTCCTCCTTGCTATCGTCG 58.159 55.000 0.00 0.00 0.00 5.12
4318 6173 0.744874 TTCCTCCTTGCTATCGTCGG 59.255 55.000 0.00 0.00 0.00 4.79
4319 6174 0.395311 TCCTCCTTGCTATCGTCGGT 60.395 55.000 0.00 0.00 0.00 4.69
4320 6175 0.030908 CCTCCTTGCTATCGTCGGTC 59.969 60.000 0.00 0.00 0.00 4.79
4321 6176 0.317103 CTCCTTGCTATCGTCGGTCG 60.317 60.000 0.00 0.00 41.41 4.79
4322 6177 1.028330 TCCTTGCTATCGTCGGTCGT 61.028 55.000 0.00 0.00 40.80 4.34
4323 6178 0.591741 CCTTGCTATCGTCGGTCGTC 60.592 60.000 0.00 0.00 40.80 4.20
4324 6179 0.591741 CTTGCTATCGTCGGTCGTCC 60.592 60.000 0.00 0.00 40.80 4.79
4325 6180 1.996786 TTGCTATCGTCGGTCGTCCC 61.997 60.000 0.00 0.00 40.80 4.46
4326 6181 2.185494 GCTATCGTCGGTCGTCCCT 61.185 63.158 0.00 0.00 40.80 4.20
4327 6182 1.647629 CTATCGTCGGTCGTCCCTG 59.352 63.158 0.00 0.00 40.80 4.45
4328 6183 2.389866 CTATCGTCGGTCGTCCCTGC 62.390 65.000 0.00 0.00 40.80 4.85
4331 6186 4.436998 GTCGGTCGTCCCTGCCAG 62.437 72.222 0.00 0.00 0.00 4.85
4335 6190 4.329545 GTCGTCCCTGCCAGGCAA 62.330 66.667 17.03 0.00 38.41 4.52
4336 6191 3.329889 TCGTCCCTGCCAGGCAAT 61.330 61.111 17.03 0.00 38.41 3.56
4337 6192 1.992834 TCGTCCCTGCCAGGCAATA 60.993 57.895 17.03 0.16 38.41 1.90
4338 6193 1.149174 CGTCCCTGCCAGGCAATAT 59.851 57.895 17.03 0.00 38.41 1.28
4339 6194 0.886490 CGTCCCTGCCAGGCAATATC 60.886 60.000 17.03 5.97 38.41 1.63
4340 6195 0.183492 GTCCCTGCCAGGCAATATCA 59.817 55.000 17.03 0.00 38.41 2.15
4341 6196 1.151760 TCCCTGCCAGGCAATATCAT 58.848 50.000 17.03 0.00 38.41 2.45
4342 6197 1.500303 TCCCTGCCAGGCAATATCATT 59.500 47.619 17.03 0.00 38.41 2.57
4343 6198 2.091166 TCCCTGCCAGGCAATATCATTT 60.091 45.455 17.03 0.00 38.41 2.32
4344 6199 2.701951 CCCTGCCAGGCAATATCATTTT 59.298 45.455 17.03 0.00 38.41 1.82
4345 6200 3.243975 CCCTGCCAGGCAATATCATTTTC 60.244 47.826 17.03 0.00 38.41 2.29
4346 6201 3.385433 CCTGCCAGGCAATATCATTTTCA 59.615 43.478 17.03 0.00 38.41 2.69
4347 6202 4.500887 CCTGCCAGGCAATATCATTTTCAG 60.501 45.833 17.03 0.00 38.41 3.02
4348 6203 4.025360 TGCCAGGCAATATCATTTTCAGT 58.975 39.130 13.33 0.00 34.76 3.41
4349 6204 4.098349 TGCCAGGCAATATCATTTTCAGTC 59.902 41.667 13.33 0.00 34.76 3.51
4350 6205 4.340381 GCCAGGCAATATCATTTTCAGTCT 59.660 41.667 6.55 0.00 0.00 3.24
4351 6206 5.735354 GCCAGGCAATATCATTTTCAGTCTG 60.735 44.000 6.55 0.00 0.00 3.51
4352 6207 5.359009 CCAGGCAATATCATTTTCAGTCTGT 59.641 40.000 0.00 0.00 0.00 3.41
4353 6208 6.543465 CCAGGCAATATCATTTTCAGTCTGTA 59.457 38.462 0.00 0.00 0.00 2.74
4354 6209 7.230108 CCAGGCAATATCATTTTCAGTCTGTAT 59.770 37.037 0.00 0.00 0.00 2.29
4355 6210 9.276590 CAGGCAATATCATTTTCAGTCTGTATA 57.723 33.333 0.00 0.00 0.00 1.47
4356 6211 9.851686 AGGCAATATCATTTTCAGTCTGTATAA 57.148 29.630 0.00 0.00 0.00 0.98
4400 6255 8.523523 TTACAAAAAGTTCATCATGCATTGAG 57.476 30.769 0.00 0.00 37.89 3.02
4413 6268 5.636121 TCATGCATTGAGAAAATTTCACTGC 59.364 36.000 8.55 11.85 45.79 4.40
4418 6273 6.587226 GCATTGAGAAAATTTCACTGCATACA 59.413 34.615 13.22 0.33 45.27 2.29
4476 6331 5.066505 AGTGAGTGTCTGGAAAAATGTTCAC 59.933 40.000 0.00 0.00 33.33 3.18
4478 6333 3.315191 AGTGTCTGGAAAAATGTTCACCG 59.685 43.478 0.00 0.00 0.00 4.94
4585 6442 3.011119 GGGAAAACCAAAAACACCAACC 58.989 45.455 0.00 0.00 39.85 3.77
4593 6450 3.503748 CCAAAAACACCAACCAAAAAGCA 59.496 39.130 0.00 0.00 0.00 3.91
4624 6481 8.445493 AGAAAAGAAAACAAGAAAAATGCAGTG 58.555 29.630 0.00 0.00 0.00 3.66
4644 6501 2.767919 GCGAACGAAAGCAATGCGC 61.768 57.895 0.00 0.00 42.91 6.09
4653 6510 2.690936 GCAATGCGCGCAATGAAC 59.309 55.556 43.79 27.51 0.00 3.18
4654 6511 1.802715 GCAATGCGCGCAATGAACT 60.803 52.632 43.79 24.08 0.00 3.01
4655 6512 0.523125 GCAATGCGCGCAATGAACTA 60.523 50.000 43.79 19.33 0.00 2.24
4656 6513 1.459756 CAATGCGCGCAATGAACTAG 58.540 50.000 38.86 15.04 0.00 2.57
4658 6515 2.023320 GCGCGCAATGAACTAGGC 59.977 61.111 29.10 0.00 0.00 3.93
4661 6518 2.709475 CGCAATGAACTAGGCGGC 59.291 61.111 0.00 0.00 45.27 6.53
4662 6519 1.815421 CGCAATGAACTAGGCGGCT 60.815 57.895 18.33 18.33 45.27 5.52
4664 6521 0.744414 GCAATGAACTAGGCGGCTCA 60.744 55.000 17.67 8.13 0.00 4.26
4697 6556 0.907486 AACCCTAAACCCTACTCGCC 59.093 55.000 0.00 0.00 0.00 5.54
4732 6591 1.424493 GCCTCGAATGCCTTCAGACG 61.424 60.000 2.57 0.00 0.00 4.18
4750 6609 8.827177 TTCAGACGTCAACTAGAAATTGTTAT 57.173 30.769 19.50 0.00 0.00 1.89
4801 6660 2.353579 GCGACCCAATTACTAAACGCAT 59.646 45.455 0.00 0.00 43.35 4.73
4802 6661 3.556775 GCGACCCAATTACTAAACGCATA 59.443 43.478 0.00 0.00 43.35 3.14
4816 6675 3.065575 GCATAAGCTACTGTGCGGT 57.934 52.632 0.00 0.00 37.91 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.276963 CGCAAGAAAAACACCTACTTACGAA 60.277 40.000 0.00 0.00 43.02 3.85
1 2 4.209703 CGCAAGAAAAACACCTACTTACGA 59.790 41.667 0.00 0.00 43.02 3.43
2 3 4.025480 ACGCAAGAAAAACACCTACTTACG 60.025 41.667 0.00 0.00 43.62 3.18
3 4 5.413969 ACGCAAGAAAAACACCTACTTAC 57.586 39.130 0.00 0.00 43.62 2.34
4 5 8.090214 AGTATACGCAAGAAAAACACCTACTTA 58.910 33.333 0.00 0.00 43.62 2.24
5 6 6.932960 AGTATACGCAAGAAAAACACCTACTT 59.067 34.615 0.00 0.00 43.62 2.24
6 7 6.461640 AGTATACGCAAGAAAAACACCTACT 58.538 36.000 0.00 0.00 43.62 2.57
7 8 6.716898 AGTATACGCAAGAAAAACACCTAC 57.283 37.500 0.00 0.00 43.62 3.18
8 9 6.707161 ACAAGTATACGCAAGAAAAACACCTA 59.293 34.615 0.00 0.00 43.62 3.08
9 10 5.529800 ACAAGTATACGCAAGAAAAACACCT 59.470 36.000 0.00 0.00 43.62 4.00
10 11 5.623673 CACAAGTATACGCAAGAAAAACACC 59.376 40.000 0.00 0.00 43.62 4.16
11 12 6.423862 TCACAAGTATACGCAAGAAAAACAC 58.576 36.000 0.00 0.00 43.62 3.32
12 13 6.293190 CCTCACAAGTATACGCAAGAAAAACA 60.293 38.462 0.00 0.00 43.62 2.83
13 14 6.077838 CCTCACAAGTATACGCAAGAAAAAC 58.922 40.000 0.00 0.00 43.62 2.43
14 15 5.180492 CCCTCACAAGTATACGCAAGAAAAA 59.820 40.000 0.00 0.00 43.62 1.94
15 16 4.693566 CCCTCACAAGTATACGCAAGAAAA 59.306 41.667 0.00 0.00 43.62 2.29
16 17 4.020928 TCCCTCACAAGTATACGCAAGAAA 60.021 41.667 0.00 0.00 43.62 2.52
17 18 3.512329 TCCCTCACAAGTATACGCAAGAA 59.488 43.478 0.00 0.00 43.62 2.52
18 19 3.093814 TCCCTCACAAGTATACGCAAGA 58.906 45.455 0.00 0.00 43.62 3.02
20 21 3.369052 CCTTCCCTCACAAGTATACGCAA 60.369 47.826 0.00 0.00 0.00 4.85
21 22 2.167693 CCTTCCCTCACAAGTATACGCA 59.832 50.000 0.00 0.00 0.00 5.24
22 23 2.429610 TCCTTCCCTCACAAGTATACGC 59.570 50.000 0.00 0.00 0.00 4.42
23 24 4.730949 TTCCTTCCCTCACAAGTATACG 57.269 45.455 0.00 0.00 0.00 3.06
26 27 8.218488 GGTATTTATTCCTTCCCTCACAAGTAT 58.782 37.037 0.00 0.00 0.00 2.12
27 28 7.404980 AGGTATTTATTCCTTCCCTCACAAGTA 59.595 37.037 0.00 0.00 0.00 2.24
28 29 6.217693 AGGTATTTATTCCTTCCCTCACAAGT 59.782 38.462 0.00 0.00 0.00 3.16
29 30 6.663734 AGGTATTTATTCCTTCCCTCACAAG 58.336 40.000 0.00 0.00 0.00 3.16
30 31 6.652205 AGGTATTTATTCCTTCCCTCACAA 57.348 37.500 0.00 0.00 0.00 3.33
31 32 7.136885 TCTAGGTATTTATTCCTTCCCTCACA 58.863 38.462 0.00 0.00 35.51 3.58
32 33 7.509659 TCTCTAGGTATTTATTCCTTCCCTCAC 59.490 40.741 0.00 0.00 35.51 3.51
33 34 7.601942 TCTCTAGGTATTTATTCCTTCCCTCA 58.398 38.462 0.00 0.00 35.51 3.86
34 35 8.493787 TTCTCTAGGTATTTATTCCTTCCCTC 57.506 38.462 0.00 0.00 35.51 4.30
35 36 8.871570 TTTCTCTAGGTATTTATTCCTTCCCT 57.128 34.615 0.00 0.00 35.51 4.20
36 37 9.916360 TTTTTCTCTAGGTATTTATTCCTTCCC 57.084 33.333 0.00 0.00 35.51 3.97
59 60 5.048364 TGTGTGACAGTTGTTAGCACTTTTT 60.048 36.000 12.42 0.00 0.00 1.94
60 61 4.457603 TGTGTGACAGTTGTTAGCACTTTT 59.542 37.500 12.42 0.00 0.00 2.27
61 62 4.006989 TGTGTGACAGTTGTTAGCACTTT 58.993 39.130 12.42 0.00 0.00 2.66
62 63 3.605634 TGTGTGACAGTTGTTAGCACTT 58.394 40.909 12.42 0.00 0.00 3.16
63 64 3.260475 TGTGTGACAGTTGTTAGCACT 57.740 42.857 12.42 0.00 0.00 4.40
64 65 3.788797 GCTTGTGTGACAGTTGTTAGCAC 60.789 47.826 0.00 0.00 0.00 4.40
65 66 2.354510 GCTTGTGTGACAGTTGTTAGCA 59.645 45.455 0.00 0.00 0.00 3.49
66 67 2.599848 CGCTTGTGTGACAGTTGTTAGC 60.600 50.000 0.00 0.00 0.00 3.09
67 68 2.863740 TCGCTTGTGTGACAGTTGTTAG 59.136 45.455 0.00 0.00 0.00 2.34
68 69 2.894902 TCGCTTGTGTGACAGTTGTTA 58.105 42.857 0.00 0.00 0.00 2.41
69 70 1.732941 TCGCTTGTGTGACAGTTGTT 58.267 45.000 0.00 0.00 0.00 2.83
70 71 1.396996 GTTCGCTTGTGTGACAGTTGT 59.603 47.619 0.00 0.00 31.77 3.32
71 72 1.665679 AGTTCGCTTGTGTGACAGTTG 59.334 47.619 0.00 0.00 31.77 3.16
72 73 2.024176 AGTTCGCTTGTGTGACAGTT 57.976 45.000 0.00 0.00 31.77 3.16
73 74 2.882927 TAGTTCGCTTGTGTGACAGT 57.117 45.000 0.00 0.00 31.77 3.55
74 75 3.123804 ACTTAGTTCGCTTGTGTGACAG 58.876 45.455 0.00 0.00 31.77 3.51
75 76 3.173668 ACTTAGTTCGCTTGTGTGACA 57.826 42.857 0.00 0.00 31.77 3.58
76 77 4.684703 ACATACTTAGTTCGCTTGTGTGAC 59.315 41.667 0.00 0.00 31.56 3.67
77 78 4.878439 ACATACTTAGTTCGCTTGTGTGA 58.122 39.130 0.00 0.00 31.56 3.58
78 79 5.288712 CCTACATACTTAGTTCGCTTGTGTG 59.711 44.000 0.00 0.00 32.49 3.82
79 80 5.184479 TCCTACATACTTAGTTCGCTTGTGT 59.816 40.000 0.00 0.00 0.00 3.72
80 81 5.647589 TCCTACATACTTAGTTCGCTTGTG 58.352 41.667 0.00 0.00 0.00 3.33
81 82 5.909621 TCCTACATACTTAGTTCGCTTGT 57.090 39.130 0.00 0.00 0.00 3.16
82 83 7.772332 AAATCCTACATACTTAGTTCGCTTG 57.228 36.000 0.00 0.00 0.00 4.01
83 84 7.646922 CGTAAATCCTACATACTTAGTTCGCTT 59.353 37.037 0.00 0.00 0.00 4.68
84 85 7.137426 CGTAAATCCTACATACTTAGTTCGCT 58.863 38.462 0.00 0.00 0.00 4.93
85 86 6.914757 ACGTAAATCCTACATACTTAGTTCGC 59.085 38.462 0.00 0.00 0.00 4.70
86 87 9.935682 TTACGTAAATCCTACATACTTAGTTCG 57.064 33.333 5.31 0.00 0.00 3.95
92 93 8.545420 CGCATTTTACGTAAATCCTACATACTT 58.455 33.333 20.72 0.00 34.19 2.24
115 116 2.799978 CGATGCCATTCTTACATACGCA 59.200 45.455 0.00 0.00 0.00 5.24
116 117 2.157668 CCGATGCCATTCTTACATACGC 59.842 50.000 0.00 0.00 0.00 4.42
137 138 4.035208 CCCAGTGTTACACTCAACAAAGAC 59.965 45.833 15.79 0.00 43.43 3.01
188 189 5.179452 AGTAACATAGACACTGGGCAAAT 57.821 39.130 0.00 0.00 0.00 2.32
192 193 4.323553 CCTAGTAACATAGACACTGGGC 57.676 50.000 0.00 0.00 34.66 5.36
193 194 3.704566 TGCCTAGTAACATAGACACTGGG 59.295 47.826 0.00 0.00 42.22 4.45
195 196 6.163476 TGTTTGCCTAGTAACATAGACACTG 58.837 40.000 0.00 0.00 29.82 3.66
206 207 4.933400 GGAATCGAGTTGTTTGCCTAGTAA 59.067 41.667 0.00 0.00 0.00 2.24
220 221 3.890147 GGGATACACTACTGGAATCGAGT 59.110 47.826 2.98 2.98 39.74 4.18
221 222 3.058155 CGGGATACACTACTGGAATCGAG 60.058 52.174 0.00 0.00 39.74 4.04
222 223 2.882761 CGGGATACACTACTGGAATCGA 59.117 50.000 0.00 0.00 39.74 3.59
223 224 2.882761 TCGGGATACACTACTGGAATCG 59.117 50.000 0.00 0.00 39.74 3.34
224 225 3.890147 ACTCGGGATACACTACTGGAATC 59.110 47.826 0.00 0.00 39.74 2.52
227 228 3.377253 AACTCGGGATACACTACTGGA 57.623 47.619 0.00 0.00 39.74 3.86
228 229 4.217983 GGATAACTCGGGATACACTACTGG 59.782 50.000 0.00 0.00 39.74 4.00
229 230 4.825634 TGGATAACTCGGGATACACTACTG 59.174 45.833 0.00 0.00 39.74 2.74
230 231 5.057843 TGGATAACTCGGGATACACTACT 57.942 43.478 0.00 0.00 39.74 2.57
231 232 5.301298 ACTTGGATAACTCGGGATACACTAC 59.699 44.000 0.00 0.00 39.74 2.73
232 233 5.452255 ACTTGGATAACTCGGGATACACTA 58.548 41.667 0.00 0.00 39.74 2.74
233 234 4.287552 ACTTGGATAACTCGGGATACACT 58.712 43.478 0.00 0.00 39.74 3.55
234 235 4.501058 GGACTTGGATAACTCGGGATACAC 60.501 50.000 0.00 0.00 39.74 2.90
235 236 3.640029 GGACTTGGATAACTCGGGATACA 59.360 47.826 0.00 0.00 39.74 2.29
236 237 3.640029 TGGACTTGGATAACTCGGGATAC 59.360 47.826 0.00 0.00 0.00 2.24
237 238 3.640029 GTGGACTTGGATAACTCGGGATA 59.360 47.826 0.00 0.00 0.00 2.59
238 239 2.434702 GTGGACTTGGATAACTCGGGAT 59.565 50.000 0.00 0.00 0.00 3.85
239 240 1.829222 GTGGACTTGGATAACTCGGGA 59.171 52.381 0.00 0.00 0.00 5.14
240 241 1.553248 TGTGGACTTGGATAACTCGGG 59.447 52.381 0.00 0.00 0.00 5.14
241 242 3.198068 CATGTGGACTTGGATAACTCGG 58.802 50.000 0.00 0.00 0.00 4.63
242 243 2.609459 GCATGTGGACTTGGATAACTCG 59.391 50.000 0.00 0.00 0.00 4.18
243 244 3.609853 TGCATGTGGACTTGGATAACTC 58.390 45.455 0.00 0.00 0.00 3.01
244 245 3.264193 TCTGCATGTGGACTTGGATAACT 59.736 43.478 0.00 0.00 0.00 2.24
245 246 3.609853 TCTGCATGTGGACTTGGATAAC 58.390 45.455 0.00 0.00 0.00 1.89
246 247 3.998913 TCTGCATGTGGACTTGGATAA 57.001 42.857 0.00 0.00 0.00 1.75
247 248 3.455543 TGATCTGCATGTGGACTTGGATA 59.544 43.478 0.00 0.00 0.00 2.59
248 249 2.240414 TGATCTGCATGTGGACTTGGAT 59.760 45.455 0.00 0.00 0.00 3.41
249 250 1.629861 TGATCTGCATGTGGACTTGGA 59.370 47.619 0.00 0.00 0.00 3.53
250 251 1.741706 GTGATCTGCATGTGGACTTGG 59.258 52.381 0.00 0.00 0.00 3.61
274 275 4.550669 TGCCATCCGATATCTAGGATCAT 58.449 43.478 8.70 0.00 44.82 2.45
284 285 7.482169 TTAGTCTTCTAATGCCATCCGATAT 57.518 36.000 0.00 0.00 32.03 1.63
288 289 5.237344 CCTTTTAGTCTTCTAATGCCATCCG 59.763 44.000 0.00 0.00 36.25 4.18
316 317 9.317936 CTAGATCAACATGCAGTTAAATAGTCA 57.682 33.333 0.00 0.00 38.74 3.41
319 320 9.926751 CAACTAGATCAACATGCAGTTAAATAG 57.073 33.333 0.00 1.65 38.74 1.73
329 330 5.819379 TCAAGATCCAACTAGATCAACATGC 59.181 40.000 0.00 0.00 44.32 4.06
359 360 3.662247 TTTGCATTGCATGTGATGTGA 57.338 38.095 12.95 0.00 38.76 3.58
375 376 4.259356 ACGGAGGGAGTAGTTAAATTTGC 58.741 43.478 0.00 0.00 0.00 3.68
384 385 2.019807 TTTGGAACGGAGGGAGTAGT 57.980 50.000 0.00 0.00 0.00 2.73
385 386 3.629142 ATTTTGGAACGGAGGGAGTAG 57.371 47.619 0.00 0.00 0.00 2.57
386 387 3.585732 AGAATTTTGGAACGGAGGGAGTA 59.414 43.478 0.00 0.00 0.00 2.59
387 388 2.375509 AGAATTTTGGAACGGAGGGAGT 59.624 45.455 0.00 0.00 0.00 3.85
388 389 3.073274 AGAATTTTGGAACGGAGGGAG 57.927 47.619 0.00 0.00 0.00 4.30
390 391 2.890945 ACAAGAATTTTGGAACGGAGGG 59.109 45.455 0.00 0.00 0.00 4.30
391 392 3.821033 AGACAAGAATTTTGGAACGGAGG 59.179 43.478 0.00 0.00 0.00 4.30
392 393 5.438761 AAGACAAGAATTTTGGAACGGAG 57.561 39.130 0.00 0.00 0.00 4.63
394 395 6.554334 TCTAAGACAAGAATTTTGGAACGG 57.446 37.500 0.00 0.00 0.00 4.44
395 396 8.905702 CAAATCTAAGACAAGAATTTTGGAACG 58.094 33.333 5.68 0.00 28.49 3.95
397 398 9.965824 GACAAATCTAAGACAAGAATTTTGGAA 57.034 29.630 0.00 0.00 33.04 3.53
398 399 9.354673 AGACAAATCTAAGACAAGAATTTTGGA 57.645 29.630 0.00 0.00 33.04 3.53
442 506 8.255206 TGGATGTATCAAGTCACGTTTTAGTAT 58.745 33.333 0.00 0.00 0.00 2.12
444 508 6.460781 TGGATGTATCAAGTCACGTTTTAGT 58.539 36.000 0.00 0.00 0.00 2.24
445 509 6.961359 TGGATGTATCAAGTCACGTTTTAG 57.039 37.500 0.00 0.00 0.00 1.85
446 510 9.607988 AATATGGATGTATCAAGTCACGTTTTA 57.392 29.630 0.00 0.00 0.00 1.52
447 511 8.506168 AATATGGATGTATCAAGTCACGTTTT 57.494 30.769 0.00 0.00 0.00 2.43
448 512 8.506168 AAATATGGATGTATCAAGTCACGTTT 57.494 30.769 0.00 0.00 0.00 3.60
449 513 9.261180 CTAAATATGGATGTATCAAGTCACGTT 57.739 33.333 0.00 0.00 0.00 3.99
450 514 8.638873 TCTAAATATGGATGTATCAAGTCACGT 58.361 33.333 0.00 0.00 0.00 4.49
451 515 8.916654 GTCTAAATATGGATGTATCAAGTCACG 58.083 37.037 0.00 0.00 0.00 4.35
452 516 9.764363 TGTCTAAATATGGATGTATCAAGTCAC 57.236 33.333 0.00 0.00 0.00 3.67
475 539 9.541143 TCCCAAAATTCTTGTTTTAGATTTGTC 57.459 29.630 0.00 0.00 28.79 3.18
477 541 9.323985 TGTCCCAAAATTCTTGTTTTAGATTTG 57.676 29.630 0.00 0.00 30.56 2.32
486 553 5.147032 TCCATCTGTCCCAAAATTCTTGTT 58.853 37.500 0.00 0.00 0.00 2.83
498 565 3.983044 AACAAGTACTCCATCTGTCCC 57.017 47.619 0.00 0.00 0.00 4.46
503 570 3.844211 TGCCCTAAACAAGTACTCCATCT 59.156 43.478 0.00 0.00 0.00 2.90
506 573 3.497227 GGTTGCCCTAAACAAGTACTCCA 60.497 47.826 0.00 0.00 0.00 3.86
509 576 3.868619 TGGTTGCCCTAAACAAGTACT 57.131 42.857 0.00 0.00 31.72 2.73
514 581 3.181470 GCTTTCTTGGTTGCCCTAAACAA 60.181 43.478 0.00 0.00 43.46 2.83
515 582 2.364002 GCTTTCTTGGTTGCCCTAAACA 59.636 45.455 0.00 0.00 33.15 2.83
516 583 2.288825 GGCTTTCTTGGTTGCCCTAAAC 60.289 50.000 0.00 0.00 39.49 2.01
517 584 1.967779 GGCTTTCTTGGTTGCCCTAAA 59.032 47.619 0.00 0.00 39.49 1.85
518 585 1.146982 AGGCTTTCTTGGTTGCCCTAA 59.853 47.619 0.00 0.00 45.94 2.69
519 586 0.777446 AGGCTTTCTTGGTTGCCCTA 59.223 50.000 0.00 0.00 45.94 3.53
520 587 0.777446 TAGGCTTTCTTGGTTGCCCT 59.223 50.000 0.00 0.00 45.94 5.19
521 588 1.177401 CTAGGCTTTCTTGGTTGCCC 58.823 55.000 0.00 0.00 45.94 5.36
522 589 1.177401 CCTAGGCTTTCTTGGTTGCC 58.823 55.000 0.00 0.00 45.21 4.52
523 590 1.177401 CCCTAGGCTTTCTTGGTTGC 58.823 55.000 2.05 0.00 36.78 4.17
524 591 2.879103 TCCCTAGGCTTTCTTGGTTG 57.121 50.000 2.05 0.00 36.78 3.77
525 592 2.649816 ACATCCCTAGGCTTTCTTGGTT 59.350 45.455 2.05 0.00 36.78 3.67
526 593 2.239907 GACATCCCTAGGCTTTCTTGGT 59.760 50.000 2.05 0.00 36.78 3.67
527 594 2.239654 TGACATCCCTAGGCTTTCTTGG 59.760 50.000 2.05 0.00 37.98 3.61
528 595 3.274288 GTGACATCCCTAGGCTTTCTTG 58.726 50.000 2.05 0.00 0.00 3.02
529 596 2.239907 GGTGACATCCCTAGGCTTTCTT 59.760 50.000 2.05 0.00 0.00 2.52
530 597 1.840635 GGTGACATCCCTAGGCTTTCT 59.159 52.381 2.05 0.00 0.00 2.52
531 598 1.559682 TGGTGACATCCCTAGGCTTTC 59.440 52.381 2.05 0.00 33.40 2.62
532 599 1.668826 TGGTGACATCCCTAGGCTTT 58.331 50.000 2.05 0.00 33.40 3.51
533 600 3.417330 TGGTGACATCCCTAGGCTT 57.583 52.632 2.05 0.00 33.40 4.35
554 621 2.860690 TACTTAGCAGCGCGTCACCG 62.861 60.000 8.43 0.00 37.07 4.94
555 622 1.153901 TACTTAGCAGCGCGTCACC 60.154 57.895 8.43 0.00 0.00 4.02
556 623 0.456312 AGTACTTAGCAGCGCGTCAC 60.456 55.000 8.43 0.00 0.00 3.67
557 624 0.179171 GAGTACTTAGCAGCGCGTCA 60.179 55.000 8.43 0.00 0.00 4.35
558 625 0.866483 GGAGTACTTAGCAGCGCGTC 60.866 60.000 8.43 0.00 0.00 5.19
559 626 1.139095 GGAGTACTTAGCAGCGCGT 59.861 57.895 8.43 0.00 0.00 6.01
560 627 1.589196 GGGAGTACTTAGCAGCGCG 60.589 63.158 0.00 0.00 0.00 6.86
561 628 0.249114 GAGGGAGTACTTAGCAGCGC 60.249 60.000 0.00 0.00 0.00 5.92
562 629 0.029567 CGAGGGAGTACTTAGCAGCG 59.970 60.000 0.00 0.00 0.00 5.18
563 630 0.249114 GCGAGGGAGTACTTAGCAGC 60.249 60.000 0.00 0.00 0.00 5.25
564 631 1.394618 AGCGAGGGAGTACTTAGCAG 58.605 55.000 0.00 0.00 0.00 4.24
565 632 1.476891 CAAGCGAGGGAGTACTTAGCA 59.523 52.381 0.00 0.00 0.00 3.49
566 633 1.749634 TCAAGCGAGGGAGTACTTAGC 59.250 52.381 0.00 0.00 0.00 3.09
567 634 4.451629 TTTCAAGCGAGGGAGTACTTAG 57.548 45.455 0.00 0.00 0.00 2.18
568 635 4.877378 TTTTCAAGCGAGGGAGTACTTA 57.123 40.909 0.00 0.00 0.00 2.24
569 636 3.764237 TTTTCAAGCGAGGGAGTACTT 57.236 42.857 0.00 0.00 0.00 2.24
570 637 3.764237 TTTTTCAAGCGAGGGAGTACT 57.236 42.857 0.00 0.00 0.00 2.73
598 665 9.469097 GTCATCTACTACTCAGTCCCATAATAT 57.531 37.037 0.00 0.00 36.14 1.28
599 666 7.606839 CGTCATCTACTACTCAGTCCCATAATA 59.393 40.741 0.00 0.00 36.14 0.98
600 667 6.431543 CGTCATCTACTACTCAGTCCCATAAT 59.568 42.308 0.00 0.00 36.14 1.28
601 668 5.763698 CGTCATCTACTACTCAGTCCCATAA 59.236 44.000 0.00 0.00 36.14 1.90
602 669 5.163227 ACGTCATCTACTACTCAGTCCCATA 60.163 44.000 0.00 0.00 36.14 2.74
603 670 4.138290 CGTCATCTACTACTCAGTCCCAT 58.862 47.826 0.00 0.00 36.14 4.00
604 671 3.054582 ACGTCATCTACTACTCAGTCCCA 60.055 47.826 0.00 0.00 36.14 4.37
605 672 3.543665 ACGTCATCTACTACTCAGTCCC 58.456 50.000 0.00 0.00 36.14 4.46
606 673 6.674694 TTTACGTCATCTACTACTCAGTCC 57.325 41.667 0.00 0.00 36.14 3.85
609 676 9.999009 TGTTAATTTACGTCATCTACTACTCAG 57.001 33.333 0.00 0.00 0.00 3.35
697 771 6.874134 CGTATCCAAATTACTCCCCTCTTATG 59.126 42.308 0.00 0.00 0.00 1.90
699 773 6.138263 TCGTATCCAAATTACTCCCCTCTTA 58.862 40.000 0.00 0.00 0.00 2.10
708 782 7.175990 ACCACACAAATTCGTATCCAAATTACT 59.824 33.333 0.00 0.00 0.00 2.24
719 793 2.477375 GAGCGAACCACACAAATTCGTA 59.523 45.455 7.36 0.00 45.38 3.43
729 803 2.198827 ATCAAATGGAGCGAACCACA 57.801 45.000 3.25 0.00 43.03 4.17
732 806 2.091541 TGGAATCAAATGGAGCGAACC 58.908 47.619 0.00 0.00 0.00 3.62
733 807 3.957468 GATGGAATCAAATGGAGCGAAC 58.043 45.455 0.00 0.00 44.70 3.95
761 835 8.833493 ACTTGTGTACTAATTTTGTAGTGTTCC 58.167 33.333 0.00 0.00 35.85 3.62
773 847 9.216117 GAGGTTGTTCATACTTGTGTACTAATT 57.784 33.333 0.00 0.00 0.00 1.40
778 852 6.854496 TTGAGGTTGTTCATACTTGTGTAC 57.146 37.500 0.00 0.00 0.00 2.90
831 942 1.065701 CCCTCGTAATCCAGTCGACTG 59.934 57.143 33.87 33.87 43.40 3.51
834 945 2.133281 TTCCCTCGTAATCCAGTCGA 57.867 50.000 0.00 0.00 0.00 4.20
836 947 4.372656 CTTCATTCCCTCGTAATCCAGTC 58.627 47.826 0.00 0.00 0.00 3.51
837 948 3.134804 CCTTCATTCCCTCGTAATCCAGT 59.865 47.826 0.00 0.00 0.00 4.00
838 949 3.495100 CCCTTCATTCCCTCGTAATCCAG 60.495 52.174 0.00 0.00 0.00 3.86
839 950 2.438021 CCCTTCATTCCCTCGTAATCCA 59.562 50.000 0.00 0.00 0.00 3.41
840 951 2.224548 CCCCTTCATTCCCTCGTAATCC 60.225 54.545 0.00 0.00 0.00 3.01
845 1262 0.912486 CTTCCCCTTCATTCCCTCGT 59.088 55.000 0.00 0.00 0.00 4.18
846 1263 0.181350 CCTTCCCCTTCATTCCCTCG 59.819 60.000 0.00 0.00 0.00 4.63
849 1266 1.063642 CCTTCCTTCCCCTTCATTCCC 60.064 57.143 0.00 0.00 0.00 3.97
852 1269 1.006400 CAGCCTTCCTTCCCCTTCATT 59.994 52.381 0.00 0.00 0.00 2.57
854 1271 0.475632 TCAGCCTTCCTTCCCCTTCA 60.476 55.000 0.00 0.00 0.00 3.02
858 1275 2.009681 TTTTTCAGCCTTCCTTCCCC 57.990 50.000 0.00 0.00 0.00 4.81
880 1297 6.908825 TGAAGAAAAATAATTGGGACAGTCG 58.091 36.000 0.00 0.00 42.39 4.18
886 1303 6.269769 AGTTGCCTGAAGAAAAATAATTGGGA 59.730 34.615 0.00 0.00 0.00 4.37
925 1345 8.624776 CCTTCCAGATCTCGCTTAATTAATTTT 58.375 33.333 5.91 0.00 0.00 1.82
926 1346 7.775561 ACCTTCCAGATCTCGCTTAATTAATTT 59.224 33.333 5.91 0.00 0.00 1.82
938 1358 0.467384 ATGGCACCTTCCAGATCTCG 59.533 55.000 0.00 0.00 39.89 4.04
944 1364 0.549950 AGATCCATGGCACCTTCCAG 59.450 55.000 6.96 0.00 39.89 3.86
946 1366 4.640771 TTATAGATCCATGGCACCTTCC 57.359 45.455 6.96 0.00 0.00 3.46
951 1371 3.941483 CCGGATTTATAGATCCATGGCAC 59.059 47.826 19.47 3.18 44.83 5.01
952 1372 3.622206 GCCGGATTTATAGATCCATGGCA 60.622 47.826 24.59 0.00 45.05 4.92
972 1392 2.751436 TTTGCTCGGATGCCTGCC 60.751 61.111 0.00 0.00 0.00 4.85
977 1397 1.435408 GCTCTCCTTTGCTCGGATGC 61.435 60.000 0.00 0.00 0.00 3.91
988 1408 2.435372 TGTGTTTTGGTGCTCTCCTT 57.565 45.000 0.00 0.00 0.00 3.36
989 1409 2.427095 GTTTGTGTTTTGGTGCTCTCCT 59.573 45.455 0.00 0.00 0.00 3.69
990 1410 2.165437 TGTTTGTGTTTTGGTGCTCTCC 59.835 45.455 0.00 0.00 0.00 3.71
991 1411 3.179048 GTGTTTGTGTTTTGGTGCTCTC 58.821 45.455 0.00 0.00 0.00 3.20
992 1412 2.560542 TGTGTTTGTGTTTTGGTGCTCT 59.439 40.909 0.00 0.00 0.00 4.09
993 1413 2.953020 TGTGTTTGTGTTTTGGTGCTC 58.047 42.857 0.00 0.00 0.00 4.26
994 1414 3.393089 TTGTGTTTGTGTTTTGGTGCT 57.607 38.095 0.00 0.00 0.00 4.40
995 1415 3.248602 TGTTTGTGTTTGTGTTTTGGTGC 59.751 39.130 0.00 0.00 0.00 5.01
996 1416 4.271049 TGTGTTTGTGTTTGTGTTTTGGTG 59.729 37.500 0.00 0.00 0.00 4.17
997 1417 4.442706 TGTGTTTGTGTTTGTGTTTTGGT 58.557 34.783 0.00 0.00 0.00 3.67
1000 1420 6.293680 GGGATTTGTGTTTGTGTTTGTGTTTT 60.294 34.615 0.00 0.00 0.00 2.43
1011 1431 6.976934 ATACTTCTTGGGATTTGTGTTTGT 57.023 33.333 0.00 0.00 0.00 2.83
1022 1442 6.612863 TCTCTCATGATGAATACTTCTTGGGA 59.387 38.462 0.00 0.00 35.34 4.37
1035 1455 4.202346 TGTGTTTGTGGTCTCTCATGATGA 60.202 41.667 0.00 0.00 0.00 2.92
1055 1475 4.722203 TGTGCTTGTGTTTGTTTTTGTG 57.278 36.364 0.00 0.00 0.00 3.33
1116 1536 3.136123 CCATTGTGCCCGGAGCTG 61.136 66.667 0.73 0.00 44.23 4.24
1261 1681 1.562575 GGCCGTTGTGGTTGTACGAG 61.563 60.000 0.00 0.00 41.21 4.18
1328 1748 2.184579 CGCGGGGTCCTTCTTCTC 59.815 66.667 0.00 0.00 0.00 2.87
1329 1749 4.083862 GCGCGGGGTCCTTCTTCT 62.084 66.667 8.83 0.00 0.00 2.85
1330 1750 4.083862 AGCGCGGGGTCCTTCTTC 62.084 66.667 8.83 0.00 0.00 2.87
1378 1798 4.265056 ACACCGCCCTTGTCCACC 62.265 66.667 0.00 0.00 0.00 4.61
1441 1861 4.415150 CGCAGGGCCACATGGAGT 62.415 66.667 6.18 0.00 37.39 3.85
1460 1880 2.426023 GGTCTTGTCGCCTGTGGT 59.574 61.111 0.00 0.00 0.00 4.16
1463 1883 2.426023 GGTGGTCTTGTCGCCTGT 59.574 61.111 0.00 0.00 32.41 4.00
1469 1889 1.222115 GACAGCACGGTGGTCTTGTC 61.222 60.000 10.32 11.19 32.62 3.18
1526 1946 1.443407 CGCTGTCCTCCATTCGGAT 59.557 57.895 0.00 0.00 41.79 4.18
1686 2106 4.803426 GAGTGAGGCGCTCCGTGG 62.803 72.222 7.64 0.00 35.24 4.94
1775 2231 2.022484 GCGCGAAGAAGCATCAGC 59.978 61.111 12.10 0.00 42.56 4.26
1783 2239 3.403057 GTCTGCACGCGCGAAGAA 61.403 61.111 39.36 21.77 42.97 2.52
1787 2243 3.634702 TATTGGTCTGCACGCGCGA 62.635 57.895 39.36 14.09 42.97 5.87
1810 2266 4.973055 CGACACGGCCGGGTTCAA 62.973 66.667 37.18 0.00 0.00 2.69
1986 2454 2.821378 TCGGTGGAAGAAGATGACGTTA 59.179 45.455 0.00 0.00 0.00 3.18
2080 2572 2.656069 CGTCGGGGGTCACCTTGAT 61.656 63.158 0.00 0.00 40.03 2.57
2194 2704 0.179100 AAGATCTCGATGTGGCGGTG 60.179 55.000 0.00 0.00 0.00 4.94
2340 2868 2.159282 AGCGGTAGTATTCACCTTGTCG 60.159 50.000 0.00 0.00 33.62 4.35
2558 4139 4.163441 TGGATGAACCAACAAGAAGACA 57.837 40.909 0.00 0.00 46.75 3.41
2601 4206 1.070758 TCTTGTTCCTCACCTGCTCAC 59.929 52.381 0.00 0.00 0.00 3.51
2776 4506 1.376812 GGGGAAGGCGTCGTTGAAT 60.377 57.895 0.00 0.00 0.00 2.57
2950 4692 1.227943 GCAGTGGCTGTCAGTCCAA 60.228 57.895 15.01 0.00 36.96 3.53
3040 4806 1.902508 ACGAGGAAGATGGAGAAGCAA 59.097 47.619 0.00 0.00 0.00 3.91
3217 4995 2.286045 TCACCATAGGGCCTGCCA 60.286 61.111 18.53 0.00 37.90 4.92
3219 4997 0.820891 CATGTCACCATAGGGCCTGC 60.821 60.000 18.53 0.00 37.90 4.85
3370 5148 2.513753 CTATTGGTTGGCCACTTGTCA 58.486 47.619 3.88 0.00 46.01 3.58
3455 5233 4.320275 GGTTGCTAAGACTTTTAGTGCACC 60.320 45.833 14.63 0.00 0.00 5.01
3464 5242 4.336280 GGGAGATTGGTTGCTAAGACTTT 58.664 43.478 0.00 0.00 0.00 2.66
3478 5256 2.810274 CACCTATGCATTCGGGAGATTG 59.190 50.000 3.54 0.00 41.73 2.67
3546 5324 6.064060 TGCCTATCAACCAATGGATAAAGAG 58.936 40.000 6.16 0.00 0.00 2.85
3575 5353 0.973632 TCAAGCATGTGGACCTACGT 59.026 50.000 0.00 0.00 0.00 3.57
3576 5354 1.337728 TGTCAAGCATGTGGACCTACG 60.338 52.381 9.86 0.00 0.00 3.51
3593 5371 6.205464 TGGTGATCTGAAGAAGAAACAATGTC 59.795 38.462 0.00 0.00 38.79 3.06
3643 5464 4.100035 TCTCAGTGCTTCACCATGTATAGG 59.900 45.833 0.00 0.00 34.49 2.57
3655 5476 0.036022 AGTGCCCTTCTCAGTGCTTC 59.964 55.000 0.00 0.00 0.00 3.86
3707 5528 5.066968 TGGAAAACAGAAAAGGACAACAC 57.933 39.130 0.00 0.00 0.00 3.32
3765 5586 6.183360 GGTCAACACTGAATTAAAACCCTTCA 60.183 38.462 0.00 0.00 31.88 3.02
3767 5588 5.659079 TGGTCAACACTGAATTAAAACCCTT 59.341 36.000 0.00 0.00 31.88 3.95
3794 5615 9.733556 AACAGGTATGACTCATTTATGTTTGTA 57.266 29.630 0.00 0.00 0.00 2.41
3841 5662 4.208686 GAGCCGGCTGTACCTCCG 62.209 72.222 38.41 13.94 44.89 4.63
3848 5671 0.105593 CATCATGTAGAGCCGGCTGT 59.894 55.000 38.41 34.11 0.00 4.40
3863 5686 8.633561 AGTGTTCGATCTAGATATGAAACATCA 58.366 33.333 17.14 10.71 0.00 3.07
3865 5688 9.823647 AAAGTGTTCGATCTAGATATGAAACAT 57.176 29.630 17.14 10.44 0.00 2.71
3899 5722 4.370364 AGGCAATTGCGTACCTTTTATG 57.630 40.909 23.26 0.00 43.26 1.90
3918 5742 9.844257 ATAGAGATGATTTTCTTGAGGTTAAGG 57.156 33.333 0.00 0.00 0.00 2.69
3926 5750 9.788889 ATGTGCATATAGAGATGATTTTCTTGA 57.211 29.630 0.00 0.00 0.00 3.02
3946 5770 4.023291 TCATAGAGGTGAGTGTATGTGCA 58.977 43.478 0.00 0.00 0.00 4.57
4038 5862 8.928448 TGCACAGAAGTAAAGGAGATAAGATAT 58.072 33.333 0.00 0.00 0.00 1.63
4048 5872 6.350110 GCCATAAAATGCACAGAAGTAAAGGA 60.350 38.462 0.00 0.00 0.00 3.36
4058 5882 2.658373 TGCTGCCATAAAATGCACAG 57.342 45.000 0.00 0.00 36.55 3.66
4069 5893 1.376424 CAGGAAGTCGTGCTGCCAT 60.376 57.895 8.96 0.00 46.04 4.40
4082 5921 3.488778 TTGTTAAGTAACCGGCAGGAA 57.511 42.857 10.86 0.00 41.02 3.36
4086 5925 6.262720 AGTTTTGTATTGTTAAGTAACCGGCA 59.737 34.615 0.00 0.00 35.37 5.69
4087 5926 6.671190 AGTTTTGTATTGTTAAGTAACCGGC 58.329 36.000 0.00 0.00 35.37 6.13
4097 5936 8.121305 TCGGGTAGACTAGTTTTGTATTGTTA 57.879 34.615 0.00 0.00 0.00 2.41
4105 5944 4.689345 CCAGTTTCGGGTAGACTAGTTTTG 59.311 45.833 0.00 0.00 0.00 2.44
4106 5945 4.590222 TCCAGTTTCGGGTAGACTAGTTTT 59.410 41.667 0.00 0.00 0.00 2.43
4115 5954 5.472137 TCTGAAAATTTCCAGTTTCGGGTAG 59.528 40.000 4.20 0.00 41.67 3.18
4119 5958 7.532682 TTTTTCTGAAAATTTCCAGTTTCGG 57.467 32.000 15.63 0.00 42.39 4.30
4143 5983 7.345958 AGGACACCCTAGCTAGTATATAGTT 57.654 40.000 19.31 0.00 42.15 2.24
4147 5987 6.483405 GTGTAGGACACCCTAGCTAGTATAT 58.517 44.000 19.31 2.44 45.28 0.86
4148 5988 5.874093 GTGTAGGACACCCTAGCTAGTATA 58.126 45.833 19.31 0.00 45.28 1.47
4150 5990 4.162040 GTGTAGGACACCCTAGCTAGTA 57.838 50.000 19.31 0.65 45.28 1.82
4151 5991 3.015675 GTGTAGGACACCCTAGCTAGT 57.984 52.381 19.31 1.25 45.28 2.57
4174 6020 0.686441 ACCTCCTACTGGCGTATGCA 60.686 55.000 9.59 0.00 45.35 3.96
4181 6028 6.622427 ATTTATATACCACCTCCTACTGGC 57.378 41.667 0.00 0.00 0.00 4.85
4217 6072 1.222113 GACAAGGGGAGCCTGCTAC 59.778 63.158 0.00 0.00 0.00 3.58
4234 6089 4.742649 AGACGGAGCGAGGGCAGA 62.743 66.667 0.00 0.00 43.41 4.26
4243 6098 4.475135 GCCCCTTGGAGACGGAGC 62.475 72.222 0.00 0.00 0.00 4.70
4250 6105 4.148825 CCGAGTCGCCCCTTGGAG 62.149 72.222 7.12 0.00 38.14 3.86
4269 6124 0.038166 GTTGGCAAGACTGGGATCCA 59.962 55.000 15.23 0.00 0.00 3.41
4291 6146 4.778143 CAAGGAGGAACGGGGGCG 62.778 72.222 0.00 0.00 0.00 6.13
4293 6148 1.345715 ATAGCAAGGAGGAACGGGGG 61.346 60.000 0.00 0.00 0.00 5.40
4294 6149 0.106894 GATAGCAAGGAGGAACGGGG 59.893 60.000 0.00 0.00 0.00 5.73
4295 6150 0.249489 CGATAGCAAGGAGGAACGGG 60.249 60.000 0.00 0.00 0.00 5.28
4296 6151 0.460311 ACGATAGCAAGGAGGAACGG 59.540 55.000 0.00 0.00 42.67 4.44
4297 6152 1.841450 GACGATAGCAAGGAGGAACG 58.159 55.000 0.00 0.00 42.67 3.95
4298 6153 1.536284 CCGACGATAGCAAGGAGGAAC 60.536 57.143 0.00 0.00 42.67 3.62
4299 6154 0.744874 CCGACGATAGCAAGGAGGAA 59.255 55.000 0.00 0.00 42.67 3.36
4300 6155 0.395311 ACCGACGATAGCAAGGAGGA 60.395 55.000 0.00 0.00 42.67 3.71
4301 6156 0.030908 GACCGACGATAGCAAGGAGG 59.969 60.000 0.00 0.00 42.67 4.30
4302 6157 0.317103 CGACCGACGATAGCAAGGAG 60.317 60.000 0.00 0.00 45.77 3.69
4303 6158 1.028330 ACGACCGACGATAGCAAGGA 61.028 55.000 0.00 0.00 45.77 3.36
4304 6159 0.591741 GACGACCGACGATAGCAAGG 60.592 60.000 0.00 0.00 45.77 3.61
4305 6160 0.591741 GGACGACCGACGATAGCAAG 60.592 60.000 0.00 0.00 45.77 4.01
4306 6161 1.430632 GGACGACCGACGATAGCAA 59.569 57.895 0.00 0.00 45.77 3.91
4307 6162 2.475466 GGGACGACCGACGATAGCA 61.475 63.158 0.00 0.00 45.77 3.49
4308 6163 2.185494 AGGGACGACCGACGATAGC 61.185 63.158 0.00 0.00 46.96 2.97
4309 6164 1.647629 CAGGGACGACCGACGATAG 59.352 63.158 0.00 0.00 46.96 2.08
4310 6165 2.475466 GCAGGGACGACCGACGATA 61.475 63.158 0.00 0.00 46.96 2.92
4311 6166 3.823330 GCAGGGACGACCGACGAT 61.823 66.667 0.00 0.00 46.96 3.73
4314 6169 4.436998 CTGGCAGGGACGACCGAC 62.437 72.222 6.61 0.00 46.96 4.79
4318 6173 2.252072 TATTGCCTGGCAGGGACGAC 62.252 60.000 33.43 17.51 40.61 4.34
4319 6174 1.344953 ATATTGCCTGGCAGGGACGA 61.345 55.000 33.43 21.42 40.61 4.20
4320 6175 0.886490 GATATTGCCTGGCAGGGACG 60.886 60.000 33.43 9.91 40.61 4.79
4321 6176 0.183492 TGATATTGCCTGGCAGGGAC 59.817 55.000 33.43 19.66 40.61 4.46
4322 6177 1.151760 ATGATATTGCCTGGCAGGGA 58.848 50.000 33.43 29.61 40.61 4.20
4323 6178 2.005370 AATGATATTGCCTGGCAGGG 57.995 50.000 33.43 16.27 40.61 4.45
4324 6179 3.385433 TGAAAATGATATTGCCTGGCAGG 59.615 43.478 29.44 29.44 40.61 4.85
4325 6180 4.098960 ACTGAAAATGATATTGCCTGGCAG 59.901 41.667 22.17 7.75 40.61 4.85
4326 6181 4.025360 ACTGAAAATGATATTGCCTGGCA 58.975 39.130 19.30 19.30 36.47 4.92
4327 6182 4.340381 AGACTGAAAATGATATTGCCTGGC 59.660 41.667 12.87 12.87 0.00 4.85
4328 6183 5.359009 ACAGACTGAAAATGATATTGCCTGG 59.641 40.000 10.08 0.00 0.00 4.45
4329 6184 6.446781 ACAGACTGAAAATGATATTGCCTG 57.553 37.500 10.08 0.00 0.00 4.85
4330 6185 9.851686 TTATACAGACTGAAAATGATATTGCCT 57.148 29.630 10.08 0.00 0.00 4.75
4368 6223 9.929722 GCATGATGAACTTTTTGTAATATACGA 57.070 29.630 0.00 0.00 0.00 3.43
4378 6233 7.646446 TTCTCAATGCATGATGAACTTTTTG 57.354 32.000 0.00 0.00 37.44 2.44
4439 6294 8.590204 TCCAGACACTCACTACACATATTTTTA 58.410 33.333 0.00 0.00 0.00 1.52
4459 6314 3.982576 ACGGTGAACATTTTTCCAGAC 57.017 42.857 0.00 0.00 0.00 3.51
4461 6316 7.812648 TCTTTATACGGTGAACATTTTTCCAG 58.187 34.615 0.00 0.00 0.00 3.86
4499 6354 8.749354 ACTCTTCCATGTTTTTAGTTTTGAACT 58.251 29.630 0.00 0.00 45.40 3.01
4500 6355 8.807581 CACTCTTCCATGTTTTTAGTTTTGAAC 58.192 33.333 0.00 0.00 0.00 3.18
4501 6356 8.744652 TCACTCTTCCATGTTTTTAGTTTTGAA 58.255 29.630 0.00 0.00 0.00 2.69
4556 6412 5.179742 GTGTTTTTGGTTTTCCCTTTCGTTT 59.820 36.000 0.00 0.00 39.73 3.60
4559 6415 3.619483 GGTGTTTTTGGTTTTCCCTTTCG 59.381 43.478 0.00 0.00 39.73 3.46
4560 6416 4.580868 TGGTGTTTTTGGTTTTCCCTTTC 58.419 39.130 0.00 0.00 39.73 2.62
4564 6420 3.011119 GGTTGGTGTTTTTGGTTTTCCC 58.989 45.455 0.00 0.00 39.73 3.97
4585 6442 7.351223 TGTTTTCTTTTCTGTTGTGCTTTTTG 58.649 30.769 0.00 0.00 0.00 2.44
4624 6481 1.122419 CGCATTGCTTTCGTTCGCTC 61.122 55.000 7.12 0.00 0.00 5.03
4632 6489 1.072116 TCATTGCGCGCATTGCTTTC 61.072 50.000 37.70 9.13 43.27 2.62
4644 6501 1.766143 GAGCCGCCTAGTTCATTGCG 61.766 60.000 2.30 2.30 46.14 4.85
4646 6503 1.398390 GTTGAGCCGCCTAGTTCATTG 59.602 52.381 0.00 0.00 0.00 2.82
4647 6504 1.279271 AGTTGAGCCGCCTAGTTCATT 59.721 47.619 0.00 0.00 0.00 2.57
4648 6505 0.905357 AGTTGAGCCGCCTAGTTCAT 59.095 50.000 0.00 0.00 0.00 2.57
4649 6506 0.685097 AAGTTGAGCCGCCTAGTTCA 59.315 50.000 0.00 0.00 0.00 3.18
4650 6507 1.079503 CAAGTTGAGCCGCCTAGTTC 58.920 55.000 0.00 0.00 0.00 3.01
4651 6508 0.955919 GCAAGTTGAGCCGCCTAGTT 60.956 55.000 7.16 0.00 0.00 2.24
4652 6509 1.376037 GCAAGTTGAGCCGCCTAGT 60.376 57.895 7.16 0.00 0.00 2.57
4653 6510 1.078848 AGCAAGTTGAGCCGCCTAG 60.079 57.895 7.16 0.00 0.00 3.02
4654 6511 1.079127 GAGCAAGTTGAGCCGCCTA 60.079 57.895 7.16 0.00 0.00 3.93
4655 6512 2.359230 GAGCAAGTTGAGCCGCCT 60.359 61.111 7.16 0.00 0.00 5.52
4656 6513 3.793144 CGAGCAAGTTGAGCCGCC 61.793 66.667 7.16 0.00 0.00 6.13
4658 6515 3.793144 GGCGAGCAAGTTGAGCCG 61.793 66.667 17.50 12.51 38.28 5.52
4660 6517 0.030638 TTTTGGCGAGCAAGTTGAGC 59.969 50.000 7.16 8.36 0.00 4.26
4661 6518 1.600413 GGTTTTGGCGAGCAAGTTGAG 60.600 52.381 7.16 0.00 0.00 3.02
4662 6519 0.383949 GGTTTTGGCGAGCAAGTTGA 59.616 50.000 7.16 0.00 0.00 3.18
4664 6521 0.755327 AGGGTTTTGGCGAGCAAGTT 60.755 50.000 0.00 0.00 0.00 2.66
4714 6573 0.108615 ACGTCTGAAGGCATTCGAGG 60.109 55.000 17.44 17.44 38.34 4.63
4750 6609 5.987019 ATAGGGTGGCCAATAACTTCTTA 57.013 39.130 7.24 0.00 0.00 2.10
4782 6641 5.296035 AGCTTATGCGTTTAGTAATTGGGTC 59.704 40.000 0.00 0.00 45.42 4.46
4783 6642 5.190677 AGCTTATGCGTTTAGTAATTGGGT 58.809 37.500 0.00 0.00 45.42 4.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.