Multiple sequence alignment - TraesCS3B01G576800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G576800 chr3B 100.000 2996 0 0 1 2996 807075101 807072106 0.000000e+00 5533.0
1 TraesCS3B01G576800 chr3B 94.266 1587 57 13 579 2157 806274029 806272469 0.000000e+00 2396.0
2 TraesCS3B01G576800 chr3B 93.308 523 24 6 2157 2675 806272304 806271789 0.000000e+00 761.0
3 TraesCS3B01G576800 chr3B 96.804 219 7 0 2778 2996 807057432 807057214 1.700000e-97 366.0
4 TraesCS3B01G576800 chr3B 84.141 227 28 5 1780 2002 380871131 380871353 2.340000e-51 213.0
5 TraesCS3B01G576800 chr3B 82.883 222 38 0 965 1186 380868221 380868442 1.820000e-47 200.0
6 TraesCS3B01G576800 chr3B 85.526 76 10 1 62 137 425727335 425727409 8.900000e-11 78.7
7 TraesCS3B01G576800 chr3A 87.294 1338 114 22 761 2087 729173866 729172574 0.000000e+00 1478.0
8 TraesCS3B01G576800 chr3A 85.740 561 73 7 5 561 729180550 729179993 1.200000e-163 586.0
9 TraesCS3B01G576800 chr3A 91.003 289 19 4 2082 2367 729172526 729172242 1.690000e-102 383.0
10 TraesCS3B01G576800 chr3A 83.117 231 37 2 957 1186 377648142 377648371 3.030000e-50 209.0
11 TraesCS3B01G576800 chr3A 94.118 85 4 1 652 735 729174313 729174229 8.720000e-26 128.0
12 TraesCS3B01G576800 chr3D 85.062 1205 116 30 898 2087 599054506 599053351 0.000000e+00 1170.0
13 TraesCS3B01G576800 chr3D 86.515 571 59 9 4 561 599057557 599056992 1.970000e-171 612.0
14 TraesCS3B01G576800 chr3D 90.558 233 16 4 2132 2362 599005350 599005578 1.350000e-78 303.0
15 TraesCS3B01G576800 chr3D 85.274 292 32 7 2082 2367 599053303 599053017 1.050000e-74 291.0
16 TraesCS3B01G576800 chr3D 84.581 227 27 5 1780 2002 288099403 288099625 5.030000e-53 219.0
17 TraesCS3B01G576800 chr3D 83.333 222 37 0 965 1186 288096199 288096420 3.910000e-49 206.0
18 TraesCS3B01G576800 chr3D 91.667 84 7 0 963 1046 598995727 598995810 1.890000e-22 117.0
19 TraesCS3B01G576800 chr3D 94.203 69 3 1 691 759 9410884 9410951 1.470000e-18 104.0
20 TraesCS3B01G576800 chr7A 86.341 410 39 11 1686 2087 688857318 688857718 5.930000e-117 431.0
21 TraesCS3B01G576800 chr6A 87.273 330 38 2 2670 2996 153581381 153581053 1.010000e-99 374.0
22 TraesCS3B01G576800 chr2D 83.582 268 37 3 1780 2043 392514347 392514611 8.300000e-61 244.0
23 TraesCS3B01G576800 chr2B 82.909 275 33 5 1780 2043 464441924 464442195 4.990000e-58 235.0
24 TraesCS3B01G576800 chr2B 87.634 186 23 0 1001 1186 464432425 464432610 1.810000e-52 217.0
25 TraesCS3B01G576800 chr2A 88.172 186 22 0 1001 1186 530350488 530350673 3.890000e-54 222.0
26 TraesCS3B01G576800 chr2A 82.117 274 36 4 1780 2043 530355688 530355958 3.890000e-54 222.0
27 TraesCS3B01G576800 chr2A 90.000 50 2 3 692 740 440925279 440925232 8.970000e-06 62.1
28 TraesCS3B01G576800 chr1A 91.837 49 4 0 692 740 551948825 551948873 5.360000e-08 69.4
29 TraesCS3B01G576800 chr5A 82.716 81 8 6 692 771 479622349 479622424 1.930000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G576800 chr3B 807072106 807075101 2995 True 5533.0 5533 100.000 1 2996 1 chr3B.!!$R2 2995
1 TraesCS3B01G576800 chr3B 806271789 806274029 2240 True 1578.5 2396 93.787 579 2675 2 chr3B.!!$R3 2096
2 TraesCS3B01G576800 chr3B 380868221 380871353 3132 False 206.5 213 83.512 965 2002 2 chr3B.!!$F2 1037
3 TraesCS3B01G576800 chr3A 729172242 729174313 2071 True 663.0 1478 90.805 652 2367 3 chr3A.!!$R2 1715
4 TraesCS3B01G576800 chr3A 729179993 729180550 557 True 586.0 586 85.740 5 561 1 chr3A.!!$R1 556
5 TraesCS3B01G576800 chr3D 599053017 599057557 4540 True 691.0 1170 85.617 4 2367 3 chr3D.!!$R1 2363
6 TraesCS3B01G576800 chr3D 288096199 288099625 3426 False 212.5 219 83.957 965 2002 2 chr3D.!!$F4 1037

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
850 3384 0.036306 AACCGCCTTCGTGATTTCCT 59.964 50.0 0.0 0.0 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2710 7915 0.110373 GTAAAACTGCCAAGGCGACG 60.11 55.0 6.6 0.0 45.51 5.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 47 7.196331 CCGAAAGAAAAACTCAAAGAAGATGT 58.804 34.615 0.00 0.00 0.00 3.06
47 49 7.698130 CGAAAGAAAAACTCAAAGAAGATGTGT 59.302 33.333 0.00 0.00 0.00 3.72
49 51 7.630242 AGAAAAACTCAAAGAAGATGTGTCA 57.370 32.000 0.00 0.00 0.00 3.58
50 52 8.230472 AGAAAAACTCAAAGAAGATGTGTCAT 57.770 30.769 0.00 0.00 0.00 3.06
67 69 2.426406 ATCATCCGTCTGAGCGCCA 61.426 57.895 2.29 0.10 0.00 5.69
73 75 2.970639 GTCTGAGCGCCACACCTA 59.029 61.111 2.29 0.00 0.00 3.08
143 146 1.539124 GGTTCTCCTCCCCACCACT 60.539 63.158 0.00 0.00 0.00 4.00
144 147 0.252558 GGTTCTCCTCCCCACCACTA 60.253 60.000 0.00 0.00 0.00 2.74
145 148 1.625508 GGTTCTCCTCCCCACCACTAT 60.626 57.143 0.00 0.00 0.00 2.12
152 155 1.831736 CTCCCCACCACTATCGAACTT 59.168 52.381 0.00 0.00 0.00 2.66
199 202 2.496817 GCGGAGGCAGAGAACGAT 59.503 61.111 0.00 0.00 39.62 3.73
215 218 3.657015 ACGATCGATGATGATTGAGCT 57.343 42.857 24.34 0.00 34.43 4.09
247 250 2.081462 TGCTGTGATGAGATGTTGCTG 58.919 47.619 0.00 0.00 0.00 4.41
248 251 1.202154 GCTGTGATGAGATGTTGCTGC 60.202 52.381 0.00 0.00 0.00 5.25
250 253 3.528532 CTGTGATGAGATGTTGCTGCTA 58.471 45.455 0.00 0.00 0.00 3.49
263 266 1.143305 GCTGCTATACTGGACATGCG 58.857 55.000 0.00 0.00 0.00 4.73
264 267 1.539065 GCTGCTATACTGGACATGCGT 60.539 52.381 0.00 0.00 0.00 5.24
307 310 2.175715 AGAGAAGGAAAGTTGGGCAAGT 59.824 45.455 0.00 0.00 0.00 3.16
322 325 1.376543 CAAGTAGCACATGGGAGCAG 58.623 55.000 0.00 0.00 32.55 4.24
484 498 1.961793 TTTCAGTCCACCGAAACCAG 58.038 50.000 0.00 0.00 0.00 4.00
486 500 1.707106 TCAGTCCACCGAAACCAGTA 58.293 50.000 0.00 0.00 0.00 2.74
500 514 5.510323 CGAAACCAGTAAAATGCGGTAATTC 59.490 40.000 0.00 0.00 0.00 2.17
501 515 4.609691 ACCAGTAAAATGCGGTAATTCG 57.390 40.909 0.00 0.00 0.00 3.34
522 536 3.247648 CGGGTAGGTGCTGAAATATTTCG 59.752 47.826 20.45 16.19 40.01 3.46
549 563 8.941977 CAAACTTAAATTTATAAAACCAGCCCC 58.058 33.333 1.21 0.00 0.00 5.80
565 579 3.126879 CCGCAATCGAGCCAGCAA 61.127 61.111 0.00 0.00 38.10 3.91
566 580 2.689785 CCGCAATCGAGCCAGCAAA 61.690 57.895 0.00 0.00 38.10 3.68
567 581 1.512734 CGCAATCGAGCCAGCAAAC 60.513 57.895 0.00 0.00 38.10 2.93
568 582 1.512734 GCAATCGAGCCAGCAAACG 60.513 57.895 0.00 0.00 0.00 3.60
569 583 1.868997 CAATCGAGCCAGCAAACGT 59.131 52.632 0.00 0.00 0.00 3.99
571 585 1.463056 CAATCGAGCCAGCAAACGTAA 59.537 47.619 0.00 0.00 0.00 3.18
572 586 1.803334 ATCGAGCCAGCAAACGTAAA 58.197 45.000 0.00 0.00 0.00 2.01
573 587 1.803334 TCGAGCCAGCAAACGTAAAT 58.197 45.000 0.00 0.00 0.00 1.40
574 588 2.147958 TCGAGCCAGCAAACGTAAATT 58.852 42.857 0.00 0.00 0.00 1.82
575 589 2.550606 TCGAGCCAGCAAACGTAAATTT 59.449 40.909 0.00 0.00 0.00 1.82
577 591 3.733727 CGAGCCAGCAAACGTAAATTTTT 59.266 39.130 0.00 0.00 0.00 1.94
581 637 3.427193 CCAGCAAACGTAAATTTTTCGGG 59.573 43.478 11.92 3.67 0.00 5.14
603 659 0.240145 GCCCGCTCACAAACTTTACC 59.760 55.000 0.00 0.00 0.00 2.85
604 660 1.600023 CCCGCTCACAAACTTTACCA 58.400 50.000 0.00 0.00 0.00 3.25
650 711 4.730949 TTGGTCTATAAACACTCCTCCG 57.269 45.455 0.00 0.00 0.00 4.63
675 736 2.971901 ACCGTCCCTCCTGAATTTTT 57.028 45.000 0.00 0.00 0.00 1.94
752 1128 3.869065 TCCCCGTAATTGTCAGTTGATC 58.131 45.455 0.00 0.00 0.00 2.92
757 3263 4.207224 CCGTAATTGTCAGTTGATCTAGCG 59.793 45.833 0.00 0.00 0.00 4.26
844 3378 4.099881 ACCTAATATTAACCGCCTTCGTGA 59.900 41.667 0.00 0.00 0.00 4.35
845 3379 5.221581 ACCTAATATTAACCGCCTTCGTGAT 60.222 40.000 0.00 0.00 0.00 3.06
846 3380 5.699458 CCTAATATTAACCGCCTTCGTGATT 59.301 40.000 0.00 0.00 0.00 2.57
847 3381 6.204108 CCTAATATTAACCGCCTTCGTGATTT 59.796 38.462 0.00 0.00 0.00 2.17
848 3382 5.668558 ATATTAACCGCCTTCGTGATTTC 57.331 39.130 0.00 0.00 0.00 2.17
849 3383 1.729284 TAACCGCCTTCGTGATTTCC 58.271 50.000 0.00 0.00 0.00 3.13
850 3384 0.036306 AACCGCCTTCGTGATTTCCT 59.964 50.000 0.00 0.00 0.00 3.36
851 3385 0.036306 ACCGCCTTCGTGATTTCCTT 59.964 50.000 0.00 0.00 0.00 3.36
852 3386 0.447801 CCGCCTTCGTGATTTCCTTG 59.552 55.000 0.00 0.00 0.00 3.61
853 3387 1.156736 CGCCTTCGTGATTTCCTTGT 58.843 50.000 0.00 0.00 0.00 3.16
854 3388 1.128692 CGCCTTCGTGATTTCCTTGTC 59.871 52.381 0.00 0.00 0.00 3.18
855 3389 1.468914 GCCTTCGTGATTTCCTTGTCC 59.531 52.381 0.00 0.00 0.00 4.02
856 3390 2.876079 GCCTTCGTGATTTCCTTGTCCT 60.876 50.000 0.00 0.00 0.00 3.85
857 3391 3.412386 CCTTCGTGATTTCCTTGTCCTT 58.588 45.455 0.00 0.00 0.00 3.36
858 3392 3.189287 CCTTCGTGATTTCCTTGTCCTTG 59.811 47.826 0.00 0.00 0.00 3.61
886 3420 2.032178 GGGATTTTTGAGAATCGGCGAG 59.968 50.000 17.22 0.00 38.61 5.03
929 3463 3.784845 GATCTCTCGAATCCTCGCC 57.215 57.895 0.00 0.00 45.04 5.54
930 3464 0.242555 GATCTCTCGAATCCTCGCCC 59.757 60.000 0.00 0.00 45.04 6.13
931 3465 1.182385 ATCTCTCGAATCCTCGCCCC 61.182 60.000 0.00 0.00 45.04 5.80
1086 3620 4.697756 CGGCAGCCCAAGAACCGA 62.698 66.667 5.63 0.00 46.71 4.69
1279 4716 2.890766 GCCTTCAAGACGGACCCCA 61.891 63.158 0.00 0.00 0.00 4.96
1548 5193 2.409948 ACCATTCTGCTTCTACTGCC 57.590 50.000 0.00 0.00 0.00 4.85
1572 5377 7.495055 CCCATCATCAAAATTTAAAGGAGGAG 58.505 38.462 0.00 0.00 0.00 3.69
1573 5378 7.418254 CCCATCATCAAAATTTAAAGGAGGAGG 60.418 40.741 0.00 0.00 0.00 4.30
1577 5382 9.153479 TCATCAAAATTTAAAGGAGGAGGAAAA 57.847 29.630 0.00 0.00 0.00 2.29
1578 5383 9.948964 CATCAAAATTTAAAGGAGGAGGAAAAT 57.051 29.630 0.00 0.00 0.00 1.82
1583 5388 9.601810 AAATTTAAAGGAGGAGGAAAATACTGT 57.398 29.630 0.00 0.00 0.00 3.55
1585 5390 9.682465 ATTTAAAGGAGGAGGAAAATACTGTAC 57.318 33.333 0.00 0.00 0.00 2.90
1877 6844 6.153067 AGAAACACAAGAGTACTGAATCTCG 58.847 40.000 0.00 0.00 36.03 4.04
1894 6861 2.697229 TCTCGAGCTGTCCATGATGATT 59.303 45.455 7.81 0.00 0.00 2.57
1997 6970 4.318332 AGCGATGAAAGTGATGAGTGAAA 58.682 39.130 0.00 0.00 0.00 2.69
2043 7016 2.853542 TGCAGGAGACAAGCCCCA 60.854 61.111 0.00 0.00 33.29 4.96
2100 7132 2.918131 GCAAAATCAGAGTTGTGTCCGC 60.918 50.000 0.00 0.00 0.00 5.54
2194 7395 0.249447 CAGGTCGGCGCATTCAGATA 60.249 55.000 10.83 0.00 0.00 1.98
2425 7628 0.178941 AGTCCGGTACCACTCCAGTT 60.179 55.000 13.54 0.00 0.00 3.16
2435 7638 3.926616 ACCACTCCAGTTTTGATCGTAG 58.073 45.455 0.00 0.00 0.00 3.51
2442 7645 5.348986 TCCAGTTTTGATCGTAGCATAGAC 58.651 41.667 0.00 0.00 0.00 2.59
2443 7646 4.207224 CCAGTTTTGATCGTAGCATAGACG 59.793 45.833 0.00 0.00 41.69 4.18
2444 7647 3.797256 AGTTTTGATCGTAGCATAGACGC 59.203 43.478 0.00 0.00 40.14 5.19
2445 7648 2.032414 TTGATCGTAGCATAGACGCG 57.968 50.000 3.53 3.53 40.14 6.01
2501 7704 5.120519 GCTCTTCTTCTCTCTCAAACATGTG 59.879 44.000 0.00 0.00 0.00 3.21
2505 7708 8.031864 TCTTCTTCTCTCTCAAACATGTGTATC 58.968 37.037 0.00 0.00 0.00 2.24
2521 7724 2.304761 TGTATCCCGCCCTTCAATATCC 59.695 50.000 0.00 0.00 0.00 2.59
2528 7731 2.287915 CGCCCTTCAATATCCTTGTTCG 59.712 50.000 0.00 0.00 0.00 3.95
2548 7751 2.399102 CGACATGTAAAACGTTTTGCCG 59.601 45.455 31.26 24.69 32.72 5.69
2565 7768 2.031245 TGCCGAACACATGTTGAACATC 60.031 45.455 8.03 0.00 36.53 3.06
2580 7783 8.726650 TGTTGAACATCTTTTTGAATGATACG 57.273 30.769 0.00 0.00 0.00 3.06
2662 7867 6.306837 TGTCACAAACATTCTTTTCGAAACAC 59.693 34.615 10.79 0.00 34.79 3.32
2663 7868 6.306837 GTCACAAACATTCTTTTCGAAACACA 59.693 34.615 10.79 0.00 34.79 3.72
2671 7876 7.379529 ACATTCTTTTCGAAACACATGAACATC 59.620 33.333 21.00 0.00 34.79 3.06
2675 7880 7.643764 TCTTTTCGAAACACATGAACATCTTTC 59.356 33.333 10.79 0.00 0.00 2.62
2676 7881 5.356882 TCGAAACACATGAACATCTTTCC 57.643 39.130 0.00 0.00 0.00 3.13
2677 7882 4.215399 TCGAAACACATGAACATCTTTCCC 59.785 41.667 0.00 0.00 0.00 3.97
2678 7883 4.216257 CGAAACACATGAACATCTTTCCCT 59.784 41.667 0.00 0.00 0.00 4.20
2679 7884 5.411361 CGAAACACATGAACATCTTTCCCTA 59.589 40.000 0.00 0.00 0.00 3.53
2680 7885 6.072728 CGAAACACATGAACATCTTTCCCTAA 60.073 38.462 0.00 0.00 0.00 2.69
2681 7886 7.362056 CGAAACACATGAACATCTTTCCCTAAT 60.362 37.037 0.00 0.00 0.00 1.73
2682 7887 8.877864 AAACACATGAACATCTTTCCCTAATA 57.122 30.769 0.00 0.00 0.00 0.98
2683 7888 7.865706 ACACATGAACATCTTTCCCTAATAC 57.134 36.000 0.00 0.00 0.00 1.89
2684 7889 7.633789 ACACATGAACATCTTTCCCTAATACT 58.366 34.615 0.00 0.00 0.00 2.12
2685 7890 8.768397 ACACATGAACATCTTTCCCTAATACTA 58.232 33.333 0.00 0.00 0.00 1.82
2686 7891 9.613428 CACATGAACATCTTTCCCTAATACTAA 57.387 33.333 0.00 0.00 0.00 2.24
2690 7895 9.667107 TGAACATCTTTCCCTAATACTAAAGTG 57.333 33.333 0.00 0.00 32.15 3.16
2691 7896 8.507524 AACATCTTTCCCTAATACTAAAGTGC 57.492 34.615 0.00 0.00 32.15 4.40
2692 7897 7.054751 ACATCTTTCCCTAATACTAAAGTGCC 58.945 38.462 0.00 0.00 32.15 5.01
2693 7898 5.667466 TCTTTCCCTAATACTAAAGTGCCG 58.333 41.667 0.00 0.00 32.15 5.69
2694 7899 5.422970 TCTTTCCCTAATACTAAAGTGCCGA 59.577 40.000 0.00 0.00 32.15 5.54
2695 7900 4.660789 TCCCTAATACTAAAGTGCCGAC 57.339 45.455 0.00 0.00 0.00 4.79
2696 7901 4.284178 TCCCTAATACTAAAGTGCCGACT 58.716 43.478 0.00 0.00 0.00 4.18
2697 7902 4.098960 TCCCTAATACTAAAGTGCCGACTG 59.901 45.833 0.00 0.00 30.61 3.51
2698 7903 3.802685 CCTAATACTAAAGTGCCGACTGC 59.197 47.826 0.00 0.00 41.77 4.40
2699 7904 3.611766 AATACTAAAGTGCCGACTGCT 57.388 42.857 0.00 0.00 42.00 4.24
2700 7905 3.611766 ATACTAAAGTGCCGACTGCTT 57.388 42.857 0.00 0.00 42.00 3.91
2701 7906 2.256117 ACTAAAGTGCCGACTGCTTT 57.744 45.000 0.00 0.00 42.00 3.51
2702 7907 2.572290 ACTAAAGTGCCGACTGCTTTT 58.428 42.857 0.00 0.00 42.00 2.27
2703 7908 2.290641 ACTAAAGTGCCGACTGCTTTTG 59.709 45.455 0.00 0.00 42.00 2.44
2704 7909 0.385390 AAAGTGCCGACTGCTTTTGG 59.615 50.000 0.00 0.00 42.00 3.28
2705 7910 0.751643 AAGTGCCGACTGCTTTTGGT 60.752 50.000 0.00 0.00 42.00 3.67
2706 7911 1.166531 AGTGCCGACTGCTTTTGGTC 61.167 55.000 0.00 0.00 42.00 4.02
2711 7916 0.433492 CGACTGCTTTTGGTCGTACG 59.567 55.000 9.53 9.53 46.63 3.67
2712 7917 1.494824 GACTGCTTTTGGTCGTACGT 58.505 50.000 16.05 0.00 0.00 3.57
2713 7918 1.454653 GACTGCTTTTGGTCGTACGTC 59.545 52.381 16.05 9.80 0.00 4.34
2714 7919 0.433492 CTGCTTTTGGTCGTACGTCG 59.567 55.000 16.05 0.00 41.41 5.12
2715 7920 1.129209 GCTTTTGGTCGTACGTCGC 59.871 57.895 16.05 4.44 39.67 5.19
2716 7921 1.777199 CTTTTGGTCGTACGTCGCC 59.223 57.895 16.05 15.72 39.67 5.54
2717 7922 0.665369 CTTTTGGTCGTACGTCGCCT 60.665 55.000 16.05 0.00 39.67 5.52
2718 7923 0.249405 TTTTGGTCGTACGTCGCCTT 60.249 50.000 16.05 0.00 39.67 4.35
2719 7924 0.940519 TTTGGTCGTACGTCGCCTTG 60.941 55.000 16.05 0.00 39.67 3.61
2720 7925 2.505557 GGTCGTACGTCGCCTTGG 60.506 66.667 16.05 0.00 39.67 3.61
2721 7926 3.177249 GTCGTACGTCGCCTTGGC 61.177 66.667 16.05 0.75 39.67 4.52
2722 7927 3.672447 TCGTACGTCGCCTTGGCA 61.672 61.111 16.05 0.00 39.67 4.92
2723 7928 3.179265 CGTACGTCGCCTTGGCAG 61.179 66.667 7.22 4.96 0.00 4.85
2724 7929 2.048503 GTACGTCGCCTTGGCAGT 60.049 61.111 12.45 10.36 0.00 4.40
2725 7930 1.666872 GTACGTCGCCTTGGCAGTT 60.667 57.895 12.45 0.00 0.00 3.16
2726 7931 1.070105 TACGTCGCCTTGGCAGTTT 59.930 52.632 12.45 0.00 0.00 2.66
2727 7932 0.533308 TACGTCGCCTTGGCAGTTTT 60.533 50.000 12.45 0.00 0.00 2.43
2728 7933 0.533308 ACGTCGCCTTGGCAGTTTTA 60.533 50.000 12.45 0.00 0.00 1.52
2729 7934 0.110373 CGTCGCCTTGGCAGTTTTAC 60.110 55.000 12.45 0.00 0.00 2.01
2730 7935 0.948678 GTCGCCTTGGCAGTTTTACA 59.051 50.000 12.45 0.00 0.00 2.41
2731 7936 1.069227 GTCGCCTTGGCAGTTTTACAG 60.069 52.381 12.45 0.00 0.00 2.74
2732 7937 1.202710 TCGCCTTGGCAGTTTTACAGA 60.203 47.619 12.45 0.00 0.00 3.41
2733 7938 1.606668 CGCCTTGGCAGTTTTACAGAA 59.393 47.619 12.45 0.00 0.00 3.02
2734 7939 2.034053 CGCCTTGGCAGTTTTACAGAAA 59.966 45.455 12.45 0.00 0.00 2.52
2735 7940 3.490078 CGCCTTGGCAGTTTTACAGAAAA 60.490 43.478 12.45 0.00 32.00 2.29
2736 7941 4.051237 GCCTTGGCAGTTTTACAGAAAAG 58.949 43.478 6.79 0.00 35.21 2.27
2737 7942 4.051237 CCTTGGCAGTTTTACAGAAAAGC 58.949 43.478 0.00 0.00 35.21 3.51
2738 7943 3.726291 TGGCAGTTTTACAGAAAAGCC 57.274 42.857 0.00 0.00 42.30 4.35
2739 7944 2.034053 TGGCAGTTTTACAGAAAAGCCG 59.966 45.455 0.00 0.00 43.73 5.52
2740 7945 2.034179 GGCAGTTTTACAGAAAAGCCGT 59.966 45.455 0.00 0.00 36.62 5.68
2741 7946 3.490249 GGCAGTTTTACAGAAAAGCCGTT 60.490 43.478 0.00 0.00 36.62 4.44
2742 7947 3.485743 GCAGTTTTACAGAAAAGCCGTTG 59.514 43.478 0.00 0.00 35.21 4.10
2743 7948 4.668289 CAGTTTTACAGAAAAGCCGTTGT 58.332 39.130 0.00 0.00 35.21 3.32
2744 7949 4.499040 CAGTTTTACAGAAAAGCCGTTGTG 59.501 41.667 0.00 0.00 35.21 3.33
2745 7950 4.157105 AGTTTTACAGAAAAGCCGTTGTGT 59.843 37.500 5.29 5.29 38.44 3.72
2746 7951 4.705337 TTTACAGAAAAGCCGTTGTGTT 57.295 36.364 5.26 0.00 36.49 3.32
2747 7952 4.705337 TTACAGAAAAGCCGTTGTGTTT 57.295 36.364 5.26 0.00 36.49 2.83
2748 7953 3.586100 ACAGAAAAGCCGTTGTGTTTT 57.414 38.095 0.00 0.00 31.39 2.43
2749 7954 4.705337 ACAGAAAAGCCGTTGTGTTTTA 57.295 36.364 0.00 0.00 31.39 1.52
2750 7955 4.668289 ACAGAAAAGCCGTTGTGTTTTAG 58.332 39.130 0.00 0.00 31.39 1.85
2751 7956 4.041723 CAGAAAAGCCGTTGTGTTTTAGG 58.958 43.478 0.00 0.00 0.00 2.69
2752 7957 3.697542 AGAAAAGCCGTTGTGTTTTAGGT 59.302 39.130 0.00 0.00 0.00 3.08
2753 7958 4.883006 AGAAAAGCCGTTGTGTTTTAGGTA 59.117 37.500 0.00 0.00 0.00 3.08
2754 7959 5.357596 AGAAAAGCCGTTGTGTTTTAGGTAA 59.642 36.000 0.00 0.00 0.00 2.85
2755 7960 5.777850 AAAGCCGTTGTGTTTTAGGTAAT 57.222 34.783 0.00 0.00 0.00 1.89
2756 7961 5.777850 AAGCCGTTGTGTTTTAGGTAATT 57.222 34.783 0.00 0.00 0.00 1.40
2757 7962 5.366829 AGCCGTTGTGTTTTAGGTAATTC 57.633 39.130 0.00 0.00 0.00 2.17
2758 7963 4.822896 AGCCGTTGTGTTTTAGGTAATTCA 59.177 37.500 0.00 0.00 0.00 2.57
2759 7964 5.299782 AGCCGTTGTGTTTTAGGTAATTCAA 59.700 36.000 0.00 0.00 0.00 2.69
2760 7965 5.400188 GCCGTTGTGTTTTAGGTAATTCAAC 59.600 40.000 0.00 0.00 0.00 3.18
2761 7966 5.916320 CCGTTGTGTTTTAGGTAATTCAACC 59.084 40.000 0.00 0.00 40.06 3.77
2762 7967 5.916320 CGTTGTGTTTTAGGTAATTCAACCC 59.084 40.000 0.00 0.00 40.71 4.11
2763 7968 5.692613 TGTGTTTTAGGTAATTCAACCCG 57.307 39.130 0.00 0.00 40.71 5.28
2764 7969 4.023021 TGTGTTTTAGGTAATTCAACCCGC 60.023 41.667 0.00 0.00 40.71 6.13
2765 7970 4.023021 GTGTTTTAGGTAATTCAACCCGCA 60.023 41.667 0.00 0.00 40.71 5.69
2766 7971 4.023021 TGTTTTAGGTAATTCAACCCGCAC 60.023 41.667 0.00 0.00 40.71 5.34
2767 7972 3.706600 TTAGGTAATTCAACCCGCACT 57.293 42.857 0.00 0.00 40.71 4.40
2768 7973 2.109425 AGGTAATTCAACCCGCACTC 57.891 50.000 0.00 0.00 40.71 3.51
2769 7974 1.092348 GGTAATTCAACCCGCACTCC 58.908 55.000 0.00 0.00 33.02 3.85
2770 7975 1.339727 GGTAATTCAACCCGCACTCCT 60.340 52.381 0.00 0.00 33.02 3.69
2771 7976 2.007608 GTAATTCAACCCGCACTCCTC 58.992 52.381 0.00 0.00 0.00 3.71
2772 7977 0.693049 AATTCAACCCGCACTCCTCT 59.307 50.000 0.00 0.00 0.00 3.69
2773 7978 0.693049 ATTCAACCCGCACTCCTCTT 59.307 50.000 0.00 0.00 0.00 2.85
2774 7979 0.472471 TTCAACCCGCACTCCTCTTT 59.528 50.000 0.00 0.00 0.00 2.52
2775 7980 0.472471 TCAACCCGCACTCCTCTTTT 59.528 50.000 0.00 0.00 0.00 2.27
2776 7981 1.695242 TCAACCCGCACTCCTCTTTTA 59.305 47.619 0.00 0.00 0.00 1.52
2777 7982 2.105134 TCAACCCGCACTCCTCTTTTAA 59.895 45.455 0.00 0.00 0.00 1.52
2778 7983 2.882137 CAACCCGCACTCCTCTTTTAAA 59.118 45.455 0.00 0.00 0.00 1.52
2779 7984 2.779506 ACCCGCACTCCTCTTTTAAAG 58.220 47.619 0.00 0.00 0.00 1.85
2780 7985 2.105993 ACCCGCACTCCTCTTTTAAAGT 59.894 45.455 4.53 0.00 0.00 2.66
2781 7986 2.484264 CCCGCACTCCTCTTTTAAAGTG 59.516 50.000 4.53 2.30 41.59 3.16
2782 7987 3.399330 CCGCACTCCTCTTTTAAAGTGA 58.601 45.455 8.16 4.44 41.26 3.41
2783 7988 3.433615 CCGCACTCCTCTTTTAAAGTGAG 59.566 47.826 18.14 18.14 41.26 3.51
2784 7989 4.307432 CGCACTCCTCTTTTAAAGTGAGA 58.693 43.478 23.04 12.46 40.58 3.27
2785 7990 4.750098 CGCACTCCTCTTTTAAAGTGAGAA 59.250 41.667 23.04 1.90 40.58 2.87
2786 7991 5.236478 CGCACTCCTCTTTTAAAGTGAGAAA 59.764 40.000 23.04 7.81 40.58 2.52
2787 7992 6.238374 CGCACTCCTCTTTTAAAGTGAGAAAA 60.238 38.462 23.04 0.67 40.58 2.29
2788 7993 6.913132 GCACTCCTCTTTTAAAGTGAGAAAAC 59.087 38.462 23.04 11.78 41.26 2.43
2789 7994 7.126398 CACTCCTCTTTTAAAGTGAGAAAACG 58.874 38.462 23.04 9.85 41.26 3.60
2790 7995 6.822170 ACTCCTCTTTTAAAGTGAGAAAACGT 59.178 34.615 23.04 7.33 34.68 3.99
2791 7996 7.336176 ACTCCTCTTTTAAAGTGAGAAAACGTT 59.664 33.333 23.04 0.00 34.68 3.99
2792 7997 8.047413 TCCTCTTTTAAAGTGAGAAAACGTTT 57.953 30.769 7.96 7.96 0.00 3.60
2793 7998 8.517056 TCCTCTTTTAAAGTGAGAAAACGTTTT 58.483 29.630 25.46 25.46 0.00 2.43
2794 7999 8.583765 CCTCTTTTAAAGTGAGAAAACGTTTTG 58.416 33.333 29.67 11.12 0.00 2.44
2795 8000 9.124807 CTCTTTTAAAGTGAGAAAACGTTTTGT 57.875 29.630 29.67 25.72 0.00 2.83
2796 8001 9.120422 TCTTTTAAAGTGAGAAAACGTTTTGTC 57.880 29.630 32.58 32.58 39.91 3.18
2797 8002 7.800015 TTTAAAGTGAGAAAACGTTTTGTCC 57.200 32.000 34.49 27.46 39.05 4.02
2798 8003 4.365899 AAGTGAGAAAACGTTTTGTCCC 57.634 40.909 34.49 27.94 39.05 4.46
2799 8004 3.349022 AGTGAGAAAACGTTTTGTCCCA 58.651 40.909 34.49 22.15 39.05 4.37
2800 8005 3.377172 AGTGAGAAAACGTTTTGTCCCAG 59.623 43.478 34.49 0.00 39.05 4.45
2801 8006 2.685897 TGAGAAAACGTTTTGTCCCAGG 59.314 45.455 34.49 0.00 39.05 4.45
2802 8007 2.686405 GAGAAAACGTTTTGTCCCAGGT 59.314 45.455 30.48 7.60 35.21 4.00
2803 8008 3.093814 AGAAAACGTTTTGTCCCAGGTT 58.906 40.909 29.67 2.40 0.00 3.50
2804 8009 2.951457 AAACGTTTTGTCCCAGGTTG 57.049 45.000 7.96 0.00 0.00 3.77
2805 8010 1.842052 AACGTTTTGTCCCAGGTTGT 58.158 45.000 0.00 0.00 0.00 3.32
2806 8011 2.713863 ACGTTTTGTCCCAGGTTGTA 57.286 45.000 0.00 0.00 0.00 2.41
2807 8012 3.002038 ACGTTTTGTCCCAGGTTGTAA 57.998 42.857 0.00 0.00 0.00 2.41
2808 8013 3.354467 ACGTTTTGTCCCAGGTTGTAAA 58.646 40.909 0.00 0.00 0.00 2.01
2809 8014 3.762823 ACGTTTTGTCCCAGGTTGTAAAA 59.237 39.130 0.00 0.00 0.00 1.52
2810 8015 4.220163 ACGTTTTGTCCCAGGTTGTAAAAA 59.780 37.500 0.00 0.00 0.00 1.94
2833 8038 2.680312 ATGAACAGACATGAGGACGG 57.320 50.000 0.00 0.00 0.00 4.79
2834 8039 1.627864 TGAACAGACATGAGGACGGA 58.372 50.000 0.00 0.00 0.00 4.69
2835 8040 1.272490 TGAACAGACATGAGGACGGAC 59.728 52.381 0.00 0.00 0.00 4.79
2836 8041 1.546476 GAACAGACATGAGGACGGACT 59.454 52.381 0.00 0.00 0.00 3.85
2837 8042 1.178276 ACAGACATGAGGACGGACTC 58.822 55.000 0.00 2.07 37.99 3.36
2838 8043 1.272203 ACAGACATGAGGACGGACTCT 60.272 52.381 0.00 0.00 38.32 3.24
2839 8044 1.403679 CAGACATGAGGACGGACTCTC 59.596 57.143 0.00 0.97 38.32 3.20
2840 8045 0.741915 GACATGAGGACGGACTCTCC 59.258 60.000 0.00 0.00 38.32 3.71
2849 8054 2.438795 GGACTCTCCGTCGCCTCT 60.439 66.667 0.00 0.00 43.79 3.69
2850 8055 2.766400 GGACTCTCCGTCGCCTCTG 61.766 68.421 0.00 0.00 43.79 3.35
2851 8056 2.752238 ACTCTCCGTCGCCTCTGG 60.752 66.667 0.00 0.00 0.00 3.86
2852 8057 2.438614 CTCTCCGTCGCCTCTGGA 60.439 66.667 0.00 0.00 0.00 3.86
2853 8058 1.826054 CTCTCCGTCGCCTCTGGAT 60.826 63.158 0.00 0.00 0.00 3.41
2854 8059 1.791103 CTCTCCGTCGCCTCTGGATC 61.791 65.000 0.00 0.00 0.00 3.36
2855 8060 2.833582 TCCGTCGCCTCTGGATCC 60.834 66.667 4.20 4.20 0.00 3.36
2856 8061 3.917760 CCGTCGCCTCTGGATCCC 61.918 72.222 9.90 0.00 0.00 3.85
2857 8062 3.147595 CGTCGCCTCTGGATCCCA 61.148 66.667 9.90 0.00 0.00 4.37
2890 8095 4.373116 ACCCACGCGACGCTCAAT 62.373 61.111 15.93 0.00 0.00 2.57
2891 8096 3.554692 CCCACGCGACGCTCAATC 61.555 66.667 15.93 0.00 0.00 2.67
2892 8097 2.507102 CCACGCGACGCTCAATCT 60.507 61.111 15.93 0.00 0.00 2.40
2893 8098 2.691522 CACGCGACGCTCAATCTG 59.308 61.111 15.93 2.48 0.00 2.90
2894 8099 3.181967 ACGCGACGCTCAATCTGC 61.182 61.111 15.93 0.00 0.00 4.26
2895 8100 2.882777 CGCGACGCTCAATCTGCT 60.883 61.111 19.02 0.00 0.00 4.24
2896 8101 2.699809 GCGACGCTCAATCTGCTG 59.300 61.111 13.73 0.00 0.00 4.41
2897 8102 2.699809 CGACGCTCAATCTGCTGC 59.300 61.111 0.00 0.00 0.00 5.25
2898 8103 2.806856 CGACGCTCAATCTGCTGCC 61.807 63.158 0.00 0.00 0.00 4.85
2899 8104 2.806856 GACGCTCAATCTGCTGCCG 61.807 63.158 0.00 0.00 0.00 5.69
2900 8105 3.570638 CGCTCAATCTGCTGCCGG 61.571 66.667 0.00 0.00 0.00 6.13
2901 8106 3.885521 GCTCAATCTGCTGCCGGC 61.886 66.667 22.73 22.73 42.22 6.13
2902 8107 3.207669 CTCAATCTGCTGCCGGCC 61.208 66.667 26.77 10.34 40.92 6.13
2920 8125 3.387603 GACGTCGGCGATCGCATC 61.388 66.667 38.00 25.37 44.11 3.91
2921 8126 4.187810 ACGTCGGCGATCGCATCA 62.188 61.111 38.00 20.19 44.11 3.07
2922 8127 3.682315 CGTCGGCGATCGCATCAC 61.682 66.667 38.00 27.87 44.11 3.06
2923 8128 3.330853 GTCGGCGATCGCATCACC 61.331 66.667 38.00 21.05 44.11 4.02
2924 8129 4.585526 TCGGCGATCGCATCACCC 62.586 66.667 38.00 20.34 44.11 4.61
2928 8133 4.889856 CGATCGCATCACCCGGCA 62.890 66.667 0.26 0.00 0.00 5.69
2929 8134 3.272334 GATCGCATCACCCGGCAC 61.272 66.667 0.00 0.00 0.00 5.01
2930 8135 4.856801 ATCGCATCACCCGGCACC 62.857 66.667 0.00 0.00 0.00 5.01
2934 8139 4.343323 CATCACCCGGCACCACCA 62.343 66.667 0.00 0.00 39.03 4.17
2935 8140 3.338250 ATCACCCGGCACCACCAT 61.338 61.111 0.00 0.00 39.03 3.55
2936 8141 2.917897 ATCACCCGGCACCACCATT 61.918 57.895 0.00 0.00 39.03 3.16
2937 8142 2.837031 ATCACCCGGCACCACCATTC 62.837 60.000 0.00 0.00 39.03 2.67
2938 8143 3.575247 ACCCGGCACCACCATTCA 61.575 61.111 0.00 0.00 39.03 2.57
2939 8144 2.751436 CCCGGCACCACCATTCAG 60.751 66.667 0.00 0.00 39.03 3.02
2940 8145 3.443045 CCGGCACCACCATTCAGC 61.443 66.667 0.00 0.00 39.03 4.26
2941 8146 2.360350 CGGCACCACCATTCAGCT 60.360 61.111 0.00 0.00 39.03 4.24
2942 8147 1.973281 CGGCACCACCATTCAGCTT 60.973 57.895 0.00 0.00 39.03 3.74
2943 8148 1.885871 GGCACCACCATTCAGCTTC 59.114 57.895 0.00 0.00 38.86 3.86
2944 8149 0.895100 GGCACCACCATTCAGCTTCA 60.895 55.000 0.00 0.00 38.86 3.02
2945 8150 0.524862 GCACCACCATTCAGCTTCAG 59.475 55.000 0.00 0.00 0.00 3.02
2946 8151 0.524862 CACCACCATTCAGCTTCAGC 59.475 55.000 0.00 0.00 42.49 4.26
2958 8163 2.577449 GCTTCAGCTACTCCTCTCAC 57.423 55.000 0.00 0.00 38.21 3.51
2959 8164 1.821753 GCTTCAGCTACTCCTCTCACA 59.178 52.381 0.00 0.00 38.21 3.58
2960 8165 2.416701 GCTTCAGCTACTCCTCTCACAC 60.417 54.545 0.00 0.00 38.21 3.82
2961 8166 1.454201 TCAGCTACTCCTCTCACACG 58.546 55.000 0.00 0.00 0.00 4.49
2962 8167 0.179150 CAGCTACTCCTCTCACACGC 60.179 60.000 0.00 0.00 0.00 5.34
2963 8168 1.226435 GCTACTCCTCTCACACGCG 60.226 63.158 3.53 3.53 0.00 6.01
2964 8169 1.226435 CTACTCCTCTCACACGCGC 60.226 63.158 5.73 0.00 0.00 6.86
2965 8170 1.923227 CTACTCCTCTCACACGCGCA 61.923 60.000 5.73 0.00 0.00 6.09
2966 8171 2.196382 TACTCCTCTCACACGCGCAC 62.196 60.000 5.73 0.00 0.00 5.34
2967 8172 4.357947 TCCTCTCACACGCGCACC 62.358 66.667 5.73 0.00 0.00 5.01
2979 8184 4.803426 CGCACCCGAGCTCCTCAC 62.803 72.222 8.47 0.00 36.29 3.51
2980 8185 3.386237 GCACCCGAGCTCCTCACT 61.386 66.667 8.47 0.00 0.00 3.41
2981 8186 2.052690 GCACCCGAGCTCCTCACTA 61.053 63.158 8.47 0.00 0.00 2.74
2982 8187 2.010582 GCACCCGAGCTCCTCACTAG 62.011 65.000 8.47 0.00 0.00 2.57
2983 8188 1.755008 ACCCGAGCTCCTCACTAGC 60.755 63.158 8.47 0.00 40.40 3.42
2989 8194 2.425562 GCTCCTCACTAGCTCTCCC 58.574 63.158 0.00 0.00 37.01 4.30
2990 8195 0.106217 GCTCCTCACTAGCTCTCCCT 60.106 60.000 0.00 0.00 37.01 4.20
2991 8196 1.691196 CTCCTCACTAGCTCTCCCTG 58.309 60.000 0.00 0.00 0.00 4.45
2992 8197 0.396417 TCCTCACTAGCTCTCCCTGC 60.396 60.000 0.00 0.00 0.00 4.85
2993 8198 1.398958 CCTCACTAGCTCTCCCTGCC 61.399 65.000 0.00 0.00 0.00 4.85
2994 8199 0.396974 CTCACTAGCTCTCCCTGCCT 60.397 60.000 0.00 0.00 0.00 4.75
2995 8200 0.041833 TCACTAGCTCTCCCTGCCTT 59.958 55.000 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 1.475403 TCTTTCGGCTTCGATCCTCT 58.525 50.000 0.00 0.00 42.93 3.69
45 47 0.101219 CGCTCAGACGGATGATGACA 59.899 55.000 0.00 0.00 0.00 3.58
47 49 1.066422 GCGCTCAGACGGATGATGA 59.934 57.895 0.00 0.00 0.00 2.92
49 51 2.419198 GGCGCTCAGACGGATGAT 59.581 61.111 7.64 0.00 0.00 2.45
50 52 3.068064 TGGCGCTCAGACGGATGA 61.068 61.111 7.64 0.00 0.00 2.92
105 108 2.187946 GGTGCCTCCACTCCGATG 59.812 66.667 0.00 0.00 41.75 3.84
106 109 3.461773 CGGTGCCTCCACTCCGAT 61.462 66.667 0.00 0.00 46.85 4.18
126 129 1.763545 GATAGTGGTGGGGAGGAGAAC 59.236 57.143 0.00 0.00 0.00 3.01
143 146 1.283613 ACCCCATTGCCAAGTTCGATA 59.716 47.619 0.00 0.00 0.00 2.92
144 147 0.039618 ACCCCATTGCCAAGTTCGAT 59.960 50.000 0.00 0.00 0.00 3.59
145 148 0.178975 AACCCCATTGCCAAGTTCGA 60.179 50.000 0.00 0.00 0.00 3.71
152 155 1.303236 CTCGACAACCCCATTGCCA 60.303 57.895 0.00 0.00 42.62 4.92
199 202 1.202452 ACGCAGCTCAATCATCATCGA 60.202 47.619 0.00 0.00 0.00 3.59
215 218 0.894835 TCACAGCATTCTCCTACGCA 59.105 50.000 0.00 0.00 0.00 5.24
229 232 2.357075 AGCAGCAACATCTCATCACAG 58.643 47.619 0.00 0.00 0.00 3.66
247 250 2.285220 CACAACGCATGTCCAGTATAGC 59.715 50.000 0.00 0.00 41.46 2.97
248 251 3.551890 GTCACAACGCATGTCCAGTATAG 59.448 47.826 0.00 0.00 41.46 1.31
250 253 2.346803 GTCACAACGCATGTCCAGTAT 58.653 47.619 0.00 0.00 41.46 2.12
263 266 1.966451 CTTCCAGGCCCGTCACAAC 60.966 63.158 0.00 0.00 0.00 3.32
264 267 2.429930 CTTCCAGGCCCGTCACAA 59.570 61.111 0.00 0.00 0.00 3.33
274 277 2.269940 TCCTTCTCTTTCCCTTCCAGG 58.730 52.381 0.00 0.00 34.30 4.45
307 310 2.187685 CGCTGCTCCCATGTGCTA 59.812 61.111 0.00 0.00 32.27 3.49
372 375 9.767228 TGATGTCTGTTGAAATCATTGAAATTT 57.233 25.926 0.00 0.00 40.84 1.82
484 498 4.024641 CCTACCCGAATTACCGCATTTTAC 60.025 45.833 0.00 0.00 0.00 2.01
486 500 2.946990 CCTACCCGAATTACCGCATTTT 59.053 45.455 0.00 0.00 0.00 1.82
500 514 3.247648 CGAAATATTTCAGCACCTACCCG 59.752 47.826 24.23 6.15 37.01 5.28
501 515 3.003378 GCGAAATATTTCAGCACCTACCC 59.997 47.826 26.02 3.67 37.01 3.69
522 536 8.447833 GGGCTGGTTTTATAAATTTAAGTTTGC 58.552 33.333 1.21 0.74 0.00 3.68
549 563 1.512734 GTTTGCTGGCTCGATTGCG 60.513 57.895 0.00 0.00 39.35 4.85
561 575 3.054166 GCCCGAAAAATTTACGTTTGCT 58.946 40.909 13.72 0.00 0.00 3.91
563 577 3.121160 GCAGCCCGAAAAATTTACGTTTG 60.121 43.478 13.72 10.49 0.00 2.93
564 578 3.054166 GCAGCCCGAAAAATTTACGTTT 58.946 40.909 13.72 0.00 0.00 3.60
565 579 2.608506 GGCAGCCCGAAAAATTTACGTT 60.609 45.455 0.00 0.00 0.00 3.99
566 580 1.068125 GGCAGCCCGAAAAATTTACGT 60.068 47.619 0.00 0.00 0.00 3.57
567 581 1.624487 GGCAGCCCGAAAAATTTACG 58.376 50.000 0.00 9.67 0.00 3.18
568 582 2.004583 GGGCAGCCCGAAAAATTTAC 57.995 50.000 17.05 0.00 32.13 2.01
603 659 1.071471 AAGACAGGTCAGCGGGTTG 59.929 57.895 1.84 0.00 0.00 3.77
604 660 1.071471 CAAGACAGGTCAGCGGGTT 59.929 57.895 1.84 0.00 0.00 4.11
650 711 3.622166 TTCAGGAGGGACGGTTAATTC 57.378 47.619 0.00 0.00 0.00 2.17
690 752 2.378547 AGCCCACCAGTTAAATTCAGGA 59.621 45.455 0.00 0.00 0.00 3.86
793 3324 3.002348 CCGAGTCTGTGTGAAAAAGGAAC 59.998 47.826 0.00 0.00 0.00 3.62
794 3325 3.118555 TCCGAGTCTGTGTGAAAAAGGAA 60.119 43.478 0.00 0.00 0.00 3.36
795 3326 2.432874 TCCGAGTCTGTGTGAAAAAGGA 59.567 45.455 0.00 0.00 0.00 3.36
855 3389 6.500684 TTCTCAAAAATCCCTTCGATCAAG 57.499 37.500 0.00 0.00 0.00 3.02
856 3390 6.183360 CGATTCTCAAAAATCCCTTCGATCAA 60.183 38.462 0.00 0.00 32.99 2.57
857 3391 5.294306 CGATTCTCAAAAATCCCTTCGATCA 59.706 40.000 0.00 0.00 32.99 2.92
858 3392 5.277538 CCGATTCTCAAAAATCCCTTCGATC 60.278 44.000 0.00 0.00 32.99 3.69
886 3420 3.242291 CGTGGGAGGGGATAGGCC 61.242 72.222 0.00 0.00 0.00 5.19
891 3425 3.234730 GATCGCGTGGGAGGGGAT 61.235 66.667 5.77 0.00 38.17 3.85
1194 3728 0.984995 GTATCCCCAGGTATGCCTCC 59.015 60.000 0.00 0.00 44.97 4.30
1209 4646 7.423199 TGATGTAGAACCTGTGTATTCGTATC 58.577 38.462 0.00 0.00 0.00 2.24
1279 4716 0.251077 ACCGTGTAGTCCGAGTTCCT 60.251 55.000 0.00 0.00 0.00 3.36
1352 4883 2.689646 GTTTCCTCTTCTCCTTGTCCG 58.310 52.381 0.00 0.00 0.00 4.79
1548 5193 7.342799 TCCTCCTCCTTTAAATTTTGATGATGG 59.657 37.037 0.00 0.00 0.00 3.51
1572 5377 7.284944 TCCTCTGCTAGTAGTACAGTATTTTCC 59.715 40.741 7.77 0.00 33.12 3.13
1573 5378 8.223177 TCCTCTGCTAGTAGTACAGTATTTTC 57.777 38.462 7.77 0.00 33.12 2.29
1577 5382 6.993902 GTCTTCCTCTGCTAGTAGTACAGTAT 59.006 42.308 7.77 0.00 33.12 2.12
1578 5383 6.347696 GTCTTCCTCTGCTAGTAGTACAGTA 58.652 44.000 7.77 0.00 33.12 2.74
1579 5384 5.187687 GTCTTCCTCTGCTAGTAGTACAGT 58.812 45.833 7.77 0.00 33.12 3.55
1580 5385 4.271533 CGTCTTCCTCTGCTAGTAGTACAG 59.728 50.000 7.77 0.00 0.00 2.74
1581 5386 4.081254 TCGTCTTCCTCTGCTAGTAGTACA 60.081 45.833 7.77 0.00 0.00 2.90
1582 5387 4.440880 TCGTCTTCCTCTGCTAGTAGTAC 58.559 47.826 7.77 0.00 0.00 2.73
1583 5388 4.750021 TCGTCTTCCTCTGCTAGTAGTA 57.250 45.455 7.77 0.00 0.00 1.82
1584 5389 3.630892 TCGTCTTCCTCTGCTAGTAGT 57.369 47.619 7.77 0.00 0.00 2.73
1585 5390 4.193090 TCTTCGTCTTCCTCTGCTAGTAG 58.807 47.826 0.63 0.63 0.00 2.57
1877 6844 5.571784 TTTGAAATCATCATGGACAGCTC 57.428 39.130 0.00 0.00 38.03 4.09
1997 6970 7.065443 GCAGTTATAACTCGAATAAGGGTTGTT 59.935 37.037 15.35 0.00 37.08 2.83
2043 7016 4.849813 TGGTGATGATGATCTTGTTCCT 57.150 40.909 0.00 0.00 0.00 3.36
2194 7395 8.613060 ATTAATCTGAGTGATGCAACGAATAT 57.387 30.769 0.00 0.00 35.21 1.28
2425 7628 2.381589 CGCGTCTATGCTACGATCAAA 58.618 47.619 0.00 0.00 42.90 2.69
2445 7648 4.241999 GGACATCCACGCATGCGC 62.242 66.667 38.15 20.36 44.19 6.09
2480 7683 7.277539 GGATACACATGTTTGAGAGAGAAGAAG 59.722 40.741 0.00 0.00 0.00 2.85
2501 7704 2.572104 AGGATATTGAAGGGCGGGATAC 59.428 50.000 0.00 0.00 0.00 2.24
2505 7708 1.133792 ACAAGGATATTGAAGGGCGGG 60.134 52.381 0.00 0.00 0.00 6.13
2521 7724 6.614592 CAAAACGTTTTACATGTCGAACAAG 58.385 36.000 24.79 4.94 0.00 3.16
2528 7731 3.619729 TCGGCAAAACGTTTTACATGTC 58.380 40.909 24.79 14.52 34.94 3.06
2548 7751 7.754069 TCAAAAAGATGTTCAACATGTGTTC 57.246 32.000 8.05 0.00 39.27 3.18
2657 7862 7.781324 ATTAGGGAAAGATGTTCATGTGTTT 57.219 32.000 0.00 0.00 0.00 2.83
2671 7876 5.522824 GTCGGCACTTTAGTATTAGGGAAAG 59.477 44.000 0.00 0.00 35.48 2.62
2675 7880 4.369182 CAGTCGGCACTTTAGTATTAGGG 58.631 47.826 0.00 0.00 0.00 3.53
2676 7881 3.802685 GCAGTCGGCACTTTAGTATTAGG 59.197 47.826 0.00 0.00 43.97 2.69
2693 7898 1.454653 GACGTACGACCAAAAGCAGTC 59.545 52.381 24.41 0.00 0.00 3.51
2694 7899 1.494824 GACGTACGACCAAAAGCAGT 58.505 50.000 24.41 0.00 0.00 4.40
2695 7900 0.433492 CGACGTACGACCAAAAGCAG 59.567 55.000 24.41 0.00 45.77 4.24
2696 7901 1.550659 GCGACGTACGACCAAAAGCA 61.551 55.000 24.41 0.00 45.77 3.91
2697 7902 1.129209 GCGACGTACGACCAAAAGC 59.871 57.895 24.41 10.42 45.77 3.51
2698 7903 1.777199 GGCGACGTACGACCAAAAG 59.223 57.895 24.41 3.69 45.37 2.27
2699 7904 3.935196 GGCGACGTACGACCAAAA 58.065 55.556 24.41 0.00 45.37 2.44
2705 7910 3.620300 CTGCCAAGGCGACGTACGA 62.620 63.158 24.41 0.00 45.77 3.43
2706 7911 3.179265 CTGCCAAGGCGACGTACG 61.179 66.667 15.01 15.01 45.51 3.67
2707 7912 1.226030 AAACTGCCAAGGCGACGTAC 61.226 55.000 6.60 0.00 45.51 3.67
2708 7913 0.533308 AAAACTGCCAAGGCGACGTA 60.533 50.000 6.60 0.00 45.51 3.57
2709 7914 0.533308 TAAAACTGCCAAGGCGACGT 60.533 50.000 6.60 0.00 45.51 4.34
2710 7915 0.110373 GTAAAACTGCCAAGGCGACG 60.110 55.000 6.60 0.00 45.51 5.12
2711 7916 0.948678 TGTAAAACTGCCAAGGCGAC 59.051 50.000 6.60 0.00 45.51 5.19
2712 7917 1.202710 TCTGTAAAACTGCCAAGGCGA 60.203 47.619 6.60 0.00 45.51 5.54
2713 7918 1.234821 TCTGTAAAACTGCCAAGGCG 58.765 50.000 6.60 4.13 45.51 5.52
2714 7919 3.726291 TTTCTGTAAAACTGCCAAGGC 57.274 42.857 3.61 3.61 42.35 4.35
2715 7920 4.051237 GCTTTTCTGTAAAACTGCCAAGG 58.949 43.478 0.00 0.00 31.37 3.61
2716 7921 4.051237 GGCTTTTCTGTAAAACTGCCAAG 58.949 43.478 8.27 0.00 41.86 3.61
2717 7922 3.490078 CGGCTTTTCTGTAAAACTGCCAA 60.490 43.478 11.87 0.00 42.14 4.52
2718 7923 2.034053 CGGCTTTTCTGTAAAACTGCCA 59.966 45.455 11.87 0.00 42.14 4.92
2719 7924 2.034179 ACGGCTTTTCTGTAAAACTGCC 59.966 45.455 0.00 0.00 40.21 4.85
2720 7925 3.349488 ACGGCTTTTCTGTAAAACTGC 57.651 42.857 0.00 0.00 31.37 4.40
2721 7926 4.499040 CACAACGGCTTTTCTGTAAAACTG 59.501 41.667 0.00 0.00 32.95 3.16
2722 7927 4.157105 ACACAACGGCTTTTCTGTAAAACT 59.843 37.500 0.00 0.00 32.95 2.66
2723 7928 4.417506 ACACAACGGCTTTTCTGTAAAAC 58.582 39.130 0.00 0.00 32.95 2.43
2724 7929 4.705337 ACACAACGGCTTTTCTGTAAAA 57.295 36.364 0.00 0.00 32.95 1.52
2725 7930 4.705337 AACACAACGGCTTTTCTGTAAA 57.295 36.364 0.00 0.00 32.95 2.01
2726 7931 4.705337 AAACACAACGGCTTTTCTGTAA 57.295 36.364 0.00 0.00 32.95 2.41
2727 7932 4.705337 AAAACACAACGGCTTTTCTGTA 57.295 36.364 0.00 0.00 32.95 2.74
2728 7933 3.586100 AAAACACAACGGCTTTTCTGT 57.414 38.095 0.00 0.00 35.31 3.41
2729 7934 4.041723 CCTAAAACACAACGGCTTTTCTG 58.958 43.478 0.00 0.00 0.00 3.02
2730 7935 3.697542 ACCTAAAACACAACGGCTTTTCT 59.302 39.130 0.00 0.00 0.00 2.52
2731 7936 4.036567 ACCTAAAACACAACGGCTTTTC 57.963 40.909 0.00 0.00 0.00 2.29
2732 7937 5.579564 TTACCTAAAACACAACGGCTTTT 57.420 34.783 0.00 0.00 0.00 2.27
2733 7938 5.777850 ATTACCTAAAACACAACGGCTTT 57.222 34.783 0.00 0.00 0.00 3.51
2734 7939 5.299782 TGAATTACCTAAAACACAACGGCTT 59.700 36.000 0.00 0.00 0.00 4.35
2735 7940 4.822896 TGAATTACCTAAAACACAACGGCT 59.177 37.500 0.00 0.00 0.00 5.52
2736 7941 5.110940 TGAATTACCTAAAACACAACGGC 57.889 39.130 0.00 0.00 0.00 5.68
2737 7942 5.916320 GGTTGAATTACCTAAAACACAACGG 59.084 40.000 0.00 0.00 37.71 4.44
2738 7943 5.916320 GGGTTGAATTACCTAAAACACAACG 59.084 40.000 0.00 0.00 38.30 4.10
2739 7944 5.916320 CGGGTTGAATTACCTAAAACACAAC 59.084 40.000 0.00 0.00 38.30 3.32
2740 7945 5.507650 GCGGGTTGAATTACCTAAAACACAA 60.508 40.000 0.00 0.00 38.30 3.33
2741 7946 4.023021 GCGGGTTGAATTACCTAAAACACA 60.023 41.667 0.00 0.00 38.30 3.72
2742 7947 4.023021 TGCGGGTTGAATTACCTAAAACAC 60.023 41.667 0.00 0.00 38.30 3.32
2743 7948 4.023021 GTGCGGGTTGAATTACCTAAAACA 60.023 41.667 0.00 0.00 38.30 2.83
2744 7949 4.216902 AGTGCGGGTTGAATTACCTAAAAC 59.783 41.667 0.00 0.00 38.30 2.43
2745 7950 4.400120 AGTGCGGGTTGAATTACCTAAAA 58.600 39.130 0.00 0.00 38.30 1.52
2746 7951 4.004982 GAGTGCGGGTTGAATTACCTAAA 58.995 43.478 0.00 0.00 38.30 1.85
2747 7952 3.602483 GAGTGCGGGTTGAATTACCTAA 58.398 45.455 0.00 0.00 38.30 2.69
2748 7953 2.093341 GGAGTGCGGGTTGAATTACCTA 60.093 50.000 0.00 0.00 38.30 3.08
2749 7954 1.339727 GGAGTGCGGGTTGAATTACCT 60.340 52.381 0.00 0.00 38.30 3.08
2750 7955 1.092348 GGAGTGCGGGTTGAATTACC 58.908 55.000 0.00 0.00 37.47 2.85
2751 7956 2.007608 GAGGAGTGCGGGTTGAATTAC 58.992 52.381 0.00 0.00 0.00 1.89
2752 7957 1.906574 AGAGGAGTGCGGGTTGAATTA 59.093 47.619 0.00 0.00 0.00 1.40
2753 7958 0.693049 AGAGGAGTGCGGGTTGAATT 59.307 50.000 0.00 0.00 0.00 2.17
2754 7959 0.693049 AAGAGGAGTGCGGGTTGAAT 59.307 50.000 0.00 0.00 0.00 2.57
2755 7960 0.472471 AAAGAGGAGTGCGGGTTGAA 59.528 50.000 0.00 0.00 0.00 2.69
2756 7961 0.472471 AAAAGAGGAGTGCGGGTTGA 59.528 50.000 0.00 0.00 0.00 3.18
2757 7962 2.178912 TAAAAGAGGAGTGCGGGTTG 57.821 50.000 0.00 0.00 0.00 3.77
2758 7963 2.943036 TTAAAAGAGGAGTGCGGGTT 57.057 45.000 0.00 0.00 0.00 4.11
2759 7964 2.105993 ACTTTAAAAGAGGAGTGCGGGT 59.894 45.455 0.00 0.00 0.00 5.28
2760 7965 2.484264 CACTTTAAAAGAGGAGTGCGGG 59.516 50.000 0.00 0.00 33.87 6.13
2761 7966 3.399330 TCACTTTAAAAGAGGAGTGCGG 58.601 45.455 0.00 0.00 39.39 5.69
2762 7967 4.307432 TCTCACTTTAAAAGAGGAGTGCG 58.693 43.478 14.12 2.98 39.39 5.34
2763 7968 6.619801 TTTCTCACTTTAAAAGAGGAGTGC 57.380 37.500 14.12 0.00 39.39 4.40
2764 7969 7.126398 CGTTTTCTCACTTTAAAAGAGGAGTG 58.874 38.462 14.12 6.86 40.56 3.51
2765 7970 6.822170 ACGTTTTCTCACTTTAAAAGAGGAGT 59.178 34.615 14.12 7.38 36.02 3.85
2766 7971 7.247929 ACGTTTTCTCACTTTAAAAGAGGAG 57.752 36.000 14.12 7.67 35.95 3.69
2767 7972 7.619964 AACGTTTTCTCACTTTAAAAGAGGA 57.380 32.000 14.12 6.03 0.00 3.71
2768 7973 8.583765 CAAAACGTTTTCTCACTTTAAAAGAGG 58.416 33.333 22.90 2.69 0.00 3.69
2769 7974 9.124807 ACAAAACGTTTTCTCACTTTAAAAGAG 57.875 29.630 22.90 8.82 0.00 2.85
2770 7975 9.120422 GACAAAACGTTTTCTCACTTTAAAAGA 57.880 29.630 22.90 0.00 0.00 2.52
2771 7976 8.370321 GGACAAAACGTTTTCTCACTTTAAAAG 58.630 33.333 24.27 12.37 0.00 2.27
2772 7977 7.328982 GGGACAAAACGTTTTCTCACTTTAAAA 59.671 33.333 24.27 0.00 0.00 1.52
2773 7978 6.807720 GGGACAAAACGTTTTCTCACTTTAAA 59.192 34.615 24.27 0.00 0.00 1.52
2774 7979 6.072064 TGGGACAAAACGTTTTCTCACTTTAA 60.072 34.615 25.19 8.39 31.92 1.52
2775 7980 5.415077 TGGGACAAAACGTTTTCTCACTTTA 59.585 36.000 25.19 8.69 31.92 1.85
2776 7981 4.218852 TGGGACAAAACGTTTTCTCACTTT 59.781 37.500 25.19 2.74 31.92 2.66
2777 7982 3.759618 TGGGACAAAACGTTTTCTCACTT 59.240 39.130 25.19 8.07 31.92 3.16
2778 7983 3.349022 TGGGACAAAACGTTTTCTCACT 58.651 40.909 25.19 4.10 31.92 3.41
2779 7984 3.488553 CCTGGGACAAAACGTTTTCTCAC 60.489 47.826 24.27 22.42 38.70 3.51
2780 7985 2.685897 CCTGGGACAAAACGTTTTCTCA 59.314 45.455 24.27 19.03 38.70 3.27
2781 7986 2.686405 ACCTGGGACAAAACGTTTTCTC 59.314 45.455 22.90 19.98 38.70 2.87
2782 7987 2.730382 ACCTGGGACAAAACGTTTTCT 58.270 42.857 22.90 12.40 38.70 2.52
2783 7988 3.183754 CAACCTGGGACAAAACGTTTTC 58.816 45.455 22.90 13.22 38.70 2.29
2784 7989 2.563620 ACAACCTGGGACAAAACGTTTT 59.436 40.909 20.26 20.26 38.70 2.43
2785 7990 2.172679 ACAACCTGGGACAAAACGTTT 58.827 42.857 7.96 7.96 38.70 3.60
2786 7991 1.842052 ACAACCTGGGACAAAACGTT 58.158 45.000 0.00 0.00 38.70 3.99
2787 7992 2.713863 TACAACCTGGGACAAAACGT 57.286 45.000 0.00 0.00 38.70 3.99
2788 7993 4.373348 TTTTACAACCTGGGACAAAACG 57.627 40.909 0.00 0.00 38.70 3.60
2808 8013 5.277974 CGTCCTCATGTCTGTTCATGTTTTT 60.278 40.000 12.32 0.00 43.70 1.94
2809 8014 4.214119 CGTCCTCATGTCTGTTCATGTTTT 59.786 41.667 12.32 0.00 43.70 2.43
2810 8015 3.748048 CGTCCTCATGTCTGTTCATGTTT 59.252 43.478 12.32 0.00 43.70 2.83
2811 8016 3.329386 CGTCCTCATGTCTGTTCATGTT 58.671 45.455 12.32 0.00 43.70 2.71
2812 8017 2.354103 CCGTCCTCATGTCTGTTCATGT 60.354 50.000 12.32 0.00 43.70 3.21
2813 8018 2.094026 TCCGTCCTCATGTCTGTTCATG 60.094 50.000 0.00 0.00 44.36 3.07
2814 8019 2.093973 GTCCGTCCTCATGTCTGTTCAT 60.094 50.000 0.00 0.00 0.00 2.57
2815 8020 1.272490 GTCCGTCCTCATGTCTGTTCA 59.728 52.381 0.00 0.00 0.00 3.18
2816 8021 1.546476 AGTCCGTCCTCATGTCTGTTC 59.454 52.381 0.00 0.00 0.00 3.18
2817 8022 1.546476 GAGTCCGTCCTCATGTCTGTT 59.454 52.381 0.00 0.00 0.00 3.16
2818 8023 1.178276 GAGTCCGTCCTCATGTCTGT 58.822 55.000 0.00 0.00 0.00 3.41
2819 8024 1.403679 GAGAGTCCGTCCTCATGTCTG 59.596 57.143 0.00 0.00 33.75 3.51
2820 8025 1.683629 GGAGAGTCCGTCCTCATGTCT 60.684 57.143 0.00 0.00 33.75 3.41
2821 8026 0.741915 GGAGAGTCCGTCCTCATGTC 59.258 60.000 0.00 0.00 33.75 3.06
2822 8027 2.889200 GGAGAGTCCGTCCTCATGT 58.111 57.895 0.00 0.00 33.75 3.21
2832 8037 2.438795 AGAGGCGACGGAGAGTCC 60.439 66.667 0.00 0.00 46.92 3.85
2833 8038 2.766400 CCAGAGGCGACGGAGAGTC 61.766 68.421 0.00 0.00 46.16 3.36
2834 8039 2.559922 ATCCAGAGGCGACGGAGAGT 62.560 60.000 0.00 0.00 30.84 3.24
2835 8040 1.791103 GATCCAGAGGCGACGGAGAG 61.791 65.000 0.00 0.00 30.84 3.20
2836 8041 1.824329 GATCCAGAGGCGACGGAGA 60.824 63.158 0.00 0.00 30.84 3.71
2837 8042 2.725008 GATCCAGAGGCGACGGAG 59.275 66.667 0.00 0.00 30.84 4.63
2838 8043 2.833582 GGATCCAGAGGCGACGGA 60.834 66.667 6.95 0.00 0.00 4.69
2839 8044 3.917760 GGGATCCAGAGGCGACGG 61.918 72.222 15.23 0.00 0.00 4.79
2840 8045 3.147595 TGGGATCCAGAGGCGACG 61.148 66.667 15.23 0.00 0.00 5.12
2873 8078 4.373116 ATTGAGCGTCGCGTGGGT 62.373 61.111 12.30 4.56 0.00 4.51
2874 8079 3.554692 GATTGAGCGTCGCGTGGG 61.555 66.667 12.30 0.00 0.00 4.61
2875 8080 2.507102 AGATTGAGCGTCGCGTGG 60.507 61.111 12.30 0.00 0.00 4.94
2876 8081 2.691522 CAGATTGAGCGTCGCGTG 59.308 61.111 12.30 0.52 0.00 5.34
2877 8082 3.181967 GCAGATTGAGCGTCGCGT 61.182 61.111 12.30 0.00 0.00 6.01
2878 8083 2.882777 AGCAGATTGAGCGTCGCG 60.883 61.111 12.30 0.00 37.01 5.87
2879 8084 2.699809 CAGCAGATTGAGCGTCGC 59.300 61.111 9.80 9.80 37.01 5.19
2880 8085 2.699809 GCAGCAGATTGAGCGTCG 59.300 61.111 0.00 0.00 37.01 5.12
2881 8086 2.806856 CGGCAGCAGATTGAGCGTC 61.807 63.158 0.00 0.00 37.01 5.19
2882 8087 2.816958 CGGCAGCAGATTGAGCGT 60.817 61.111 0.00 0.00 37.01 5.07
2883 8088 3.570638 CCGGCAGCAGATTGAGCG 61.571 66.667 0.00 0.00 37.01 5.03
2884 8089 3.885521 GCCGGCAGCAGATTGAGC 61.886 66.667 24.80 0.00 42.97 4.26
2885 8090 3.207669 GGCCGGCAGCAGATTGAG 61.208 66.667 30.85 0.00 46.50 3.02
2903 8108 3.387603 GATGCGATCGCCGACGTC 61.388 66.667 35.12 20.71 41.76 4.34
2904 8109 4.187810 TGATGCGATCGCCGACGT 62.188 61.111 35.12 16.87 41.76 4.34
2905 8110 3.682315 GTGATGCGATCGCCGACG 61.682 66.667 35.12 0.50 41.76 5.12
2911 8116 4.889856 TGCCGGGTGATGCGATCG 62.890 66.667 11.69 11.69 0.00 3.69
2912 8117 3.272334 GTGCCGGGTGATGCGATC 61.272 66.667 2.18 0.00 0.00 3.69
2913 8118 4.856801 GGTGCCGGGTGATGCGAT 62.857 66.667 2.18 0.00 0.00 4.58
2917 8122 3.643595 ATGGTGGTGCCGGGTGATG 62.644 63.158 2.18 0.00 41.21 3.07
2918 8123 2.837031 GAATGGTGGTGCCGGGTGAT 62.837 60.000 2.18 0.00 41.21 3.06
2919 8124 3.561120 GAATGGTGGTGCCGGGTGA 62.561 63.158 2.18 0.00 41.21 4.02
2920 8125 3.061848 GAATGGTGGTGCCGGGTG 61.062 66.667 2.18 0.00 41.21 4.61
2921 8126 3.567579 CTGAATGGTGGTGCCGGGT 62.568 63.158 2.18 0.00 41.21 5.28
2922 8127 2.751436 CTGAATGGTGGTGCCGGG 60.751 66.667 2.18 0.00 41.21 5.73
2923 8128 3.443045 GCTGAATGGTGGTGCCGG 61.443 66.667 0.00 0.00 41.21 6.13
2924 8129 1.926511 GAAGCTGAATGGTGGTGCCG 61.927 60.000 0.00 0.00 41.21 5.69
2925 8130 0.895100 TGAAGCTGAATGGTGGTGCC 60.895 55.000 0.00 0.00 37.90 5.01
2926 8131 0.524862 CTGAAGCTGAATGGTGGTGC 59.475 55.000 0.00 0.00 0.00 5.01
2927 8132 0.524862 GCTGAAGCTGAATGGTGGTG 59.475 55.000 0.00 0.00 38.21 4.17
2928 8133 2.952714 GCTGAAGCTGAATGGTGGT 58.047 52.632 0.00 0.00 38.21 4.16
2939 8144 1.821753 TGTGAGAGGAGTAGCTGAAGC 59.178 52.381 0.00 0.00 42.49 3.86
2940 8145 2.159448 CGTGTGAGAGGAGTAGCTGAAG 60.159 54.545 0.00 0.00 0.00 3.02
2941 8146 1.813178 CGTGTGAGAGGAGTAGCTGAA 59.187 52.381 0.00 0.00 0.00 3.02
2942 8147 1.454201 CGTGTGAGAGGAGTAGCTGA 58.546 55.000 0.00 0.00 0.00 4.26
2943 8148 0.179150 GCGTGTGAGAGGAGTAGCTG 60.179 60.000 0.00 0.00 0.00 4.24
2944 8149 1.649390 CGCGTGTGAGAGGAGTAGCT 61.649 60.000 0.00 0.00 0.00 3.32
2945 8150 1.226435 CGCGTGTGAGAGGAGTAGC 60.226 63.158 0.00 0.00 0.00 3.58
2946 8151 1.226435 GCGCGTGTGAGAGGAGTAG 60.226 63.158 8.43 0.00 0.00 2.57
2947 8152 1.969589 TGCGCGTGTGAGAGGAGTA 60.970 57.895 8.43 0.00 0.00 2.59
2948 8153 3.295273 TGCGCGTGTGAGAGGAGT 61.295 61.111 8.43 0.00 0.00 3.85
2949 8154 2.807045 GTGCGCGTGTGAGAGGAG 60.807 66.667 8.43 0.00 0.00 3.69
2950 8155 4.357947 GGTGCGCGTGTGAGAGGA 62.358 66.667 8.43 0.00 0.00 3.71
2962 8167 4.803426 GTGAGGAGCTCGGGTGCG 62.803 72.222 7.83 0.00 38.13 5.34
2963 8168 2.010582 CTAGTGAGGAGCTCGGGTGC 62.011 65.000 7.83 0.00 32.35 5.01
2964 8169 2.010582 GCTAGTGAGGAGCTCGGGTG 62.011 65.000 7.83 0.00 36.96 4.61
2965 8170 1.755008 GCTAGTGAGGAGCTCGGGT 60.755 63.158 7.83 0.00 36.96 5.28
2966 8171 3.124686 GCTAGTGAGGAGCTCGGG 58.875 66.667 7.83 0.00 36.96 5.14
2971 8176 0.106217 AGGGAGAGCTAGTGAGGAGC 60.106 60.000 0.00 0.00 40.42 4.70
2972 8177 1.691196 CAGGGAGAGCTAGTGAGGAG 58.309 60.000 0.00 0.00 0.00 3.69
2973 8178 0.396417 GCAGGGAGAGCTAGTGAGGA 60.396 60.000 0.00 0.00 0.00 3.71
2974 8179 1.398958 GGCAGGGAGAGCTAGTGAGG 61.399 65.000 0.00 0.00 0.00 3.86
2975 8180 0.396974 AGGCAGGGAGAGCTAGTGAG 60.397 60.000 0.00 0.00 0.00 3.51
2976 8181 0.041833 AAGGCAGGGAGAGCTAGTGA 59.958 55.000 0.00 0.00 0.00 3.41
2977 8182 2.601664 AAGGCAGGGAGAGCTAGTG 58.398 57.895 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.