Multiple sequence alignment - TraesCS3B01G575300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G575300 chr3B 100.000 2420 0 0 1 2420 805273379 805270960 0.000000e+00 4470.0
1 TraesCS3B01G575300 chr3B 94.068 590 35 0 1831 2420 511623714 511623125 0.000000e+00 896.0
2 TraesCS3B01G575300 chr3B 88.912 487 32 8 1 468 511624192 511623709 4.480000e-162 580.0
3 TraesCS3B01G575300 chr3B 81.107 307 40 14 464 757 829489218 829488917 1.870000e-56 230.0
4 TraesCS3B01G575300 chr7B 94.237 590 34 0 1831 2420 658272347 658271758 0.000000e+00 902.0
5 TraesCS3B01G575300 chr7B 90.651 599 46 6 1831 2420 23703366 23702769 0.000000e+00 787.0
6 TraesCS3B01G575300 chr7B 88.000 525 56 4 1831 2355 350686506 350685989 4.420000e-172 614.0
7 TraesCS3B01G575300 chr7B 89.538 325 24 1 154 468 658272666 658272342 1.040000e-108 403.0
8 TraesCS3B01G575300 chr7B 88.623 167 10 6 1 161 658273088 658272925 6.830000e-46 195.0
9 TraesCS3B01G575300 chr7B 88.194 144 6 2 107 239 23714261 23714118 6.920000e-36 161.0
10 TraesCS3B01G575300 chr7B 94.805 77 4 0 392 468 23703437 23703361 1.180000e-23 121.0
11 TraesCS3B01G575300 chr7B 88.889 63 5 2 235 295 23703509 23703447 2.580000e-10 76.8
12 TraesCS3B01G575300 chr7D 88.192 542 55 4 1831 2364 501663658 501664198 2.620000e-179 638.0
13 TraesCS3B01G575300 chr1B 87.140 521 48 6 1831 2347 39702129 39702634 7.500000e-160 573.0
14 TraesCS3B01G575300 chr1B 94.000 50 1 2 902 951 453199688 453199641 9.280000e-10 75.0
15 TraesCS3B01G575300 chr2D 88.631 431 44 2 1938 2364 427963798 427963369 9.920000e-144 520.0
16 TraesCS3B01G575300 chr2D 87.719 114 14 0 1831 1944 427965634 427965521 1.510000e-27 134.0
17 TraesCS3B01G575300 chr4D 86.235 494 30 20 1378 1836 384271668 384271178 3.590000e-138 501.0
18 TraesCS3B01G575300 chr4D 94.182 275 14 2 1086 1360 384271925 384271653 3.720000e-113 418.0
19 TraesCS3B01G575300 chr4D 80.499 441 53 17 1831 2267 131267567 131267978 8.400000e-80 307.0
20 TraesCS3B01G575300 chr5B 91.718 326 27 0 977 1302 456637730 456637405 1.020000e-123 453.0
21 TraesCS3B01G575300 chr5B 89.888 89 9 0 1521 1609 589121431 589121519 5.470000e-22 115.0
22 TraesCS3B01G575300 chr5D 91.875 320 26 0 983 1302 380694932 380694613 4.750000e-122 448.0
23 TraesCS3B01G575300 chr5A 91.875 320 26 0 983 1302 480817368 480817049 4.750000e-122 448.0
24 TraesCS3B01G575300 chr5A 88.542 96 10 1 1518 1613 599803881 599803975 5.470000e-22 115.0
25 TraesCS3B01G575300 chr5A 85.455 110 12 4 1730 1836 592625001 592624893 7.070000e-21 111.0
26 TraesCS3B01G575300 chr2A 81.519 395 34 15 1477 1836 16935524 16935134 3.040000e-74 289.0
27 TraesCS3B01G575300 chr2A 78.797 349 39 14 1521 1835 764330747 764330400 4.080000e-48 202.0
28 TraesCS3B01G575300 chr2A 83.893 149 18 6 1692 1836 513850389 513850243 1.170000e-28 137.0
29 TraesCS3B01G575300 chr2A 96.429 56 0 1 1378 1433 16935661 16935608 9.210000e-15 91.6
30 TraesCS3B01G575300 chr2A 98.113 53 0 1 1305 1357 16935700 16935649 9.210000e-15 91.6
31 TraesCS3B01G575300 chr2A 100.000 30 0 0 1521 1550 513848457 513848428 3.360000e-04 56.5
32 TraesCS3B01G575300 chr2B 90.860 186 14 3 1492 1675 28170243 28170427 1.860000e-61 246.0
33 TraesCS3B01G575300 chr2B 79.641 167 13 10 1692 1839 28170498 28170662 1.530000e-17 100.0
34 TraesCS3B01G575300 chr6D 84.667 150 16 7 1694 1838 424723603 424723750 2.510000e-30 143.0
35 TraesCS3B01G575300 chr6D 79.861 144 9 13 1615 1739 43049967 43050109 1.190000e-13 87.9
36 TraesCS3B01G575300 chr6D 100.000 30 0 0 1521 1550 424723506 424723535 3.360000e-04 56.5
37 TraesCS3B01G575300 chr3A 82.993 147 19 6 1694 1835 17272224 17272369 7.020000e-26 128.0
38 TraesCS3B01G575300 chr3A 86.325 117 15 1 1492 1607 17272048 17272164 2.530000e-25 126.0
39 TraesCS3B01G575300 chr1A 86.538 104 13 1 1734 1836 14793698 14793595 1.970000e-21 113.0
40 TraesCS3B01G575300 chr1A 85.567 97 11 2 1512 1607 543639108 543639202 5.510000e-17 99.0
41 TraesCS3B01G575300 chr1A 93.878 49 3 0 1691 1739 345299143 345299191 9.280000e-10 75.0
42 TraesCS3B01G575300 chrUn 83.929 112 11 7 1730 1836 129541770 129541879 1.530000e-17 100.0
43 TraesCS3B01G575300 chrUn 90.000 60 3 3 902 960 129540573 129540630 9.280000e-10 75.0
44 TraesCS3B01G575300 chr3D 83.186 113 13 6 1730 1837 597186482 597186593 5.510000e-17 99.0
45 TraesCS3B01G575300 chr3D 97.143 35 1 0 946 980 475662086 475662052 2.600000e-05 60.2
46 TraesCS3B01G575300 chr6A 85.897 78 6 5 902 976 212356014 212356089 7.170000e-11 78.7
47 TraesCS3B01G575300 chr6B 84.615 78 7 5 902 976 539277836 539277761 3.340000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G575300 chr3B 805270960 805273379 2419 True 4470.000000 4470 100.000000 1 2420 1 chr3B.!!$R1 2419
1 TraesCS3B01G575300 chr3B 511623125 511624192 1067 True 738.000000 896 91.490000 1 2420 2 chr3B.!!$R3 2419
2 TraesCS3B01G575300 chr7B 350685989 350686506 517 True 614.000000 614 88.000000 1831 2355 1 chr7B.!!$R2 524
3 TraesCS3B01G575300 chr7B 658271758 658273088 1330 True 500.000000 902 90.799333 1 2420 3 chr7B.!!$R4 2419
4 TraesCS3B01G575300 chr7B 23702769 23703509 740 True 328.266667 787 91.448333 235 2420 3 chr7B.!!$R3 2185
5 TraesCS3B01G575300 chr7D 501663658 501664198 540 False 638.000000 638 88.192000 1831 2364 1 chr7D.!!$F1 533
6 TraesCS3B01G575300 chr1B 39702129 39702634 505 False 573.000000 573 87.140000 1831 2347 1 chr1B.!!$F1 516
7 TraesCS3B01G575300 chr2D 427963369 427965634 2265 True 327.000000 520 88.175000 1831 2364 2 chr2D.!!$R1 533
8 TraesCS3B01G575300 chr4D 384271178 384271925 747 True 459.500000 501 90.208500 1086 1836 2 chr4D.!!$R1 750

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
547 837 0.033109 AAAATGTCCTAGCCAGGCCC 60.033 55.0 8.22 0.0 42.3 5.80 F
750 1040 0.034863 TTATCCTTCCGCCACCAACC 60.035 55.0 0.00 0.0 0.0 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1372 1662 0.108424 CTCTCAAGGAGCTTCACCGG 60.108 60.000 0.0 0.0 35.08 5.28 R
1750 2072 1.003118 GGAATTTTTGGCTTGGGGGTC 59.997 52.381 0.0 0.0 0.00 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.006805 GAGGATGATGAGGCCGACG 60.007 63.158 0.00 0.00 0.00 5.12
48 55 1.522355 CGCCTGCCCTACATGTCTG 60.522 63.158 0.00 0.00 0.00 3.51
49 56 1.821332 GCCTGCCCTACATGTCTGC 60.821 63.158 0.00 4.28 0.00 4.26
50 57 1.153086 CCTGCCCTACATGTCTGCC 60.153 63.158 0.00 0.00 0.00 4.85
51 58 1.153086 CTGCCCTACATGTCTGCCC 60.153 63.158 0.00 0.00 0.00 5.36
52 59 1.913951 CTGCCCTACATGTCTGCCCA 61.914 60.000 0.00 0.00 0.00 5.36
53 60 1.153086 GCCCTACATGTCTGCCCAG 60.153 63.158 0.00 0.00 0.00 4.45
54 61 1.915078 GCCCTACATGTCTGCCCAGT 61.915 60.000 0.00 0.00 0.00 4.00
55 62 0.107508 CCCTACATGTCTGCCCAGTG 60.108 60.000 0.00 0.00 0.00 3.66
78 85 2.663196 GCAAGCTACCACCGGAGT 59.337 61.111 9.46 7.95 0.00 3.85
87 94 2.750350 CACCGGAGTGGCTTTCCT 59.250 61.111 9.46 0.00 43.94 3.36
92 99 0.976073 CGGAGTGGCTTTCCTAGGGA 60.976 60.000 9.46 0.00 32.34 4.20
93 100 0.542333 GGAGTGGCTTTCCTAGGGAC 59.458 60.000 9.46 0.00 0.00 4.46
167 444 0.464916 TGATCTAGCCACGGACGCTA 60.465 55.000 0.00 0.00 37.79 4.26
193 470 3.706373 ATTGACGGGACTGCCGCT 61.706 61.111 9.20 0.00 33.83 5.52
244 531 3.814615 CTGACAGTGGCTGCACGGT 62.815 63.158 0.50 4.91 36.27 4.83
249 536 3.357079 GTGGCTGCACGGTTGAGG 61.357 66.667 0.50 0.00 0.00 3.86
251 538 3.050275 GGCTGCACGGTTGAGGTC 61.050 66.667 0.50 0.00 0.00 3.85
256 543 1.288127 GCACGGTTGAGGTCGTAGT 59.712 57.895 0.00 0.00 37.88 2.73
295 582 2.817834 CGAAAATGAGGCCGGCGA 60.818 61.111 22.54 7.19 0.00 5.54
332 619 3.875727 GCAAGATCAGATGCATGTACTGT 59.124 43.478 2.46 0.00 42.12 3.55
341 628 1.897133 TGCATGTACTGTCCGGTAAGT 59.103 47.619 14.67 14.67 0.00 2.24
353 640 3.059120 GTCCGGTAAGTCTTTTCTGCAAC 60.059 47.826 0.00 0.00 0.00 4.17
373 660 5.532557 CAACTCCCATTTTCTCTTTTCACC 58.467 41.667 0.00 0.00 0.00 4.02
429 719 2.359376 TGATCAGGGGAGGGAGAAAA 57.641 50.000 0.00 0.00 0.00 2.29
468 758 2.698855 GCAAGACTGCCCATCTAAGA 57.301 50.000 0.00 0.00 43.26 2.10
469 759 2.991250 GCAAGACTGCCCATCTAAGAA 58.009 47.619 0.00 0.00 43.26 2.52
470 760 2.680339 GCAAGACTGCCCATCTAAGAAC 59.320 50.000 0.00 0.00 43.26 3.01
471 761 3.869912 GCAAGACTGCCCATCTAAGAACA 60.870 47.826 0.00 0.00 43.26 3.18
472 762 4.521146 CAAGACTGCCCATCTAAGAACAT 58.479 43.478 0.00 0.00 0.00 2.71
473 763 4.414337 AGACTGCCCATCTAAGAACATC 57.586 45.455 0.00 0.00 0.00 3.06
474 764 4.036518 AGACTGCCCATCTAAGAACATCT 58.963 43.478 0.00 0.00 0.00 2.90
475 765 4.100808 AGACTGCCCATCTAAGAACATCTC 59.899 45.833 0.00 0.00 0.00 2.75
476 766 3.135530 ACTGCCCATCTAAGAACATCTCC 59.864 47.826 0.00 0.00 0.00 3.71
477 767 3.114606 TGCCCATCTAAGAACATCTCCA 58.885 45.455 0.00 0.00 0.00 3.86
478 768 3.118261 TGCCCATCTAAGAACATCTCCAC 60.118 47.826 0.00 0.00 0.00 4.02
479 769 3.135530 GCCCATCTAAGAACATCTCCACT 59.864 47.826 0.00 0.00 0.00 4.00
480 770 4.345257 GCCCATCTAAGAACATCTCCACTA 59.655 45.833 0.00 0.00 0.00 2.74
481 771 5.510520 GCCCATCTAAGAACATCTCCACTAG 60.511 48.000 0.00 0.00 0.00 2.57
482 772 5.011533 CCCATCTAAGAACATCTCCACTAGG 59.988 48.000 0.00 0.00 0.00 3.02
483 773 5.835819 CCATCTAAGAACATCTCCACTAGGA 59.164 44.000 0.00 0.00 43.21 2.94
484 774 6.239176 CCATCTAAGAACATCTCCACTAGGAC 60.239 46.154 0.00 0.00 39.61 3.85
485 775 5.202004 TCTAAGAACATCTCCACTAGGACC 58.798 45.833 0.00 0.00 39.61 4.46
486 776 2.753247 AGAACATCTCCACTAGGACCC 58.247 52.381 0.00 0.00 39.61 4.46
487 777 2.044492 AGAACATCTCCACTAGGACCCA 59.956 50.000 0.00 0.00 39.61 4.51
488 778 2.166907 ACATCTCCACTAGGACCCAG 57.833 55.000 0.00 0.00 39.61 4.45
489 779 1.343478 ACATCTCCACTAGGACCCAGG 60.343 57.143 0.00 0.00 39.61 4.45
490 780 1.062886 CATCTCCACTAGGACCCAGGA 60.063 57.143 0.00 0.00 39.61 3.86
491 781 0.335361 TCTCCACTAGGACCCAGGAC 59.665 60.000 0.00 0.00 39.61 3.85
492 782 1.000019 TCCACTAGGACCCAGGACG 60.000 63.158 0.00 0.00 39.61 4.79
493 783 2.722201 CCACTAGGACCCAGGACGC 61.722 68.421 0.00 0.00 36.89 5.19
494 784 2.363925 ACTAGGACCCAGGACGCC 60.364 66.667 0.00 0.00 0.00 5.68
495 785 3.155167 CTAGGACCCAGGACGCCC 61.155 72.222 0.00 0.00 0.00 6.13
496 786 4.791069 TAGGACCCAGGACGCCCC 62.791 72.222 0.00 0.00 0.00 5.80
546 836 1.852633 AAAAATGTCCTAGCCAGGCC 58.147 50.000 8.22 0.00 42.30 5.19
547 837 0.033109 AAAATGTCCTAGCCAGGCCC 60.033 55.000 8.22 0.00 42.30 5.80
548 838 1.937924 AAATGTCCTAGCCAGGCCCC 61.938 60.000 8.22 0.00 42.30 5.80
551 841 4.363056 TCCTAGCCAGGCCCCCAA 62.363 66.667 8.22 0.00 42.30 4.12
552 842 3.813724 CCTAGCCAGGCCCCCAAG 61.814 72.222 8.22 0.00 34.35 3.61
553 843 2.692368 CTAGCCAGGCCCCCAAGA 60.692 66.667 8.22 0.00 0.00 3.02
554 844 3.015145 TAGCCAGGCCCCCAAGAC 61.015 66.667 8.22 0.00 0.00 3.01
557 847 4.410400 CCAGGCCCCCAAGACGTC 62.410 72.222 7.70 7.70 0.00 4.34
558 848 4.760047 CAGGCCCCCAAGACGTCG 62.760 72.222 10.46 0.00 0.00 5.12
560 850 4.324991 GGCCCCCAAGACGTCGTT 62.325 66.667 10.46 2.10 0.00 3.85
561 851 2.281276 GCCCCCAAGACGTCGTTT 60.281 61.111 10.46 0.00 0.00 3.60
562 852 1.895231 GCCCCCAAGACGTCGTTTT 60.895 57.895 10.46 0.00 0.00 2.43
563 853 1.946267 CCCCCAAGACGTCGTTTTG 59.054 57.895 18.91 18.91 0.00 2.44
564 854 1.281656 CCCCAAGACGTCGTTTTGC 59.718 57.895 20.09 0.00 0.00 3.68
565 855 1.440938 CCCCAAGACGTCGTTTTGCA 61.441 55.000 20.09 0.00 0.00 4.08
566 856 0.591170 CCCAAGACGTCGTTTTGCAT 59.409 50.000 20.09 0.00 0.00 3.96
567 857 1.399727 CCCAAGACGTCGTTTTGCATC 60.400 52.381 20.09 0.00 0.00 3.91
568 858 1.580439 CAAGACGTCGTTTTGCATCG 58.420 50.000 14.75 0.00 0.00 3.84
569 859 0.511221 AAGACGTCGTTTTGCATCGG 59.489 50.000 10.46 0.00 0.00 4.18
570 860 0.319211 AGACGTCGTTTTGCATCGGA 60.319 50.000 10.46 0.00 0.00 4.55
571 861 0.719465 GACGTCGTTTTGCATCGGAT 59.281 50.000 0.00 0.00 0.00 4.18
572 862 1.127951 GACGTCGTTTTGCATCGGATT 59.872 47.619 0.00 0.00 0.00 3.01
573 863 1.533731 ACGTCGTTTTGCATCGGATTT 59.466 42.857 0.00 0.00 0.00 2.17
574 864 2.031508 ACGTCGTTTTGCATCGGATTTT 60.032 40.909 0.00 0.00 0.00 1.82
575 865 2.338228 CGTCGTTTTGCATCGGATTTTG 59.662 45.455 0.00 0.00 0.00 2.44
576 866 2.090503 GTCGTTTTGCATCGGATTTTGC 59.909 45.455 0.00 0.00 39.33 3.68
577 867 2.057316 CGTTTTGCATCGGATTTTGCA 58.943 42.857 0.82 0.82 46.51 4.08
585 875 6.406093 TGCATCGGATTTTGCAAAAATTAG 57.594 33.333 27.10 17.97 45.30 1.73
586 876 5.931146 TGCATCGGATTTTGCAAAAATTAGT 59.069 32.000 27.10 11.50 45.30 2.24
587 877 6.128607 TGCATCGGATTTTGCAAAAATTAGTG 60.129 34.615 27.10 21.59 45.30 2.74
588 878 5.837586 TCGGATTTTGCAAAAATTAGTGC 57.162 34.783 27.10 14.93 41.29 4.40
642 932 4.039092 AGCTGGGAACGCAGGCAT 62.039 61.111 17.82 0.00 33.30 4.40
643 933 3.064324 GCTGGGAACGCAGGCATT 61.064 61.111 17.82 0.00 0.00 3.56
644 934 2.639327 GCTGGGAACGCAGGCATTT 61.639 57.895 17.82 0.00 0.00 2.32
645 935 1.213537 CTGGGAACGCAGGCATTTG 59.786 57.895 10.36 0.00 0.00 2.32
646 936 2.125952 GGGAACGCAGGCATTTGC 60.126 61.111 0.00 0.00 40.67 3.68
647 937 2.639327 GGGAACGCAGGCATTTGCT 61.639 57.895 2.12 0.00 41.90 3.91
648 938 1.290009 GGAACGCAGGCATTTGCTT 59.710 52.632 2.12 0.00 41.90 3.91
649 939 0.319813 GGAACGCAGGCATTTGCTTT 60.320 50.000 2.12 2.74 41.90 3.51
650 940 1.501169 GAACGCAGGCATTTGCTTTT 58.499 45.000 2.12 0.00 41.90 2.27
651 941 1.866601 GAACGCAGGCATTTGCTTTTT 59.133 42.857 2.12 0.00 41.90 1.94
652 942 1.219646 ACGCAGGCATTTGCTTTTTG 58.780 45.000 2.12 0.00 41.90 2.44
653 943 1.219646 CGCAGGCATTTGCTTTTTGT 58.780 45.000 2.12 0.00 41.90 2.83
654 944 2.223923 ACGCAGGCATTTGCTTTTTGTA 60.224 40.909 2.12 0.00 41.90 2.41
655 945 2.409378 CGCAGGCATTTGCTTTTTGTAG 59.591 45.455 2.12 0.00 41.90 2.74
656 946 2.738314 GCAGGCATTTGCTTTTTGTAGG 59.262 45.455 2.12 0.00 40.89 3.18
657 947 2.738314 CAGGCATTTGCTTTTTGTAGGC 59.262 45.455 2.12 0.00 41.70 3.93
658 948 1.726248 GGCATTTGCTTTTTGTAGGCG 59.274 47.619 2.12 0.00 41.70 5.52
659 949 1.126662 GCATTTGCTTTTTGTAGGCGC 59.873 47.619 0.00 0.00 38.21 6.53
660 950 2.676076 CATTTGCTTTTTGTAGGCGCT 58.324 42.857 7.64 0.00 0.00 5.92
661 951 2.132740 TTTGCTTTTTGTAGGCGCTG 57.867 45.000 7.64 0.00 0.00 5.18
662 952 1.028905 TTGCTTTTTGTAGGCGCTGT 58.971 45.000 7.64 0.00 0.00 4.40
663 953 0.591170 TGCTTTTTGTAGGCGCTGTC 59.409 50.000 7.64 0.00 0.00 3.51
664 954 0.109735 GCTTTTTGTAGGCGCTGTCC 60.110 55.000 7.64 0.00 0.00 4.02
665 955 0.521735 CTTTTTGTAGGCGCTGTCCC 59.478 55.000 7.64 0.00 0.00 4.46
666 956 0.179015 TTTTTGTAGGCGCTGTCCCA 60.179 50.000 7.64 0.00 0.00 4.37
667 957 0.037590 TTTTGTAGGCGCTGTCCCAT 59.962 50.000 7.64 0.00 0.00 4.00
668 958 0.037590 TTTGTAGGCGCTGTCCCATT 59.962 50.000 7.64 0.00 0.00 3.16
669 959 0.037590 TTGTAGGCGCTGTCCCATTT 59.962 50.000 7.64 0.00 0.00 2.32
670 960 0.676466 TGTAGGCGCTGTCCCATTTG 60.676 55.000 7.64 0.00 0.00 2.32
671 961 1.748879 TAGGCGCTGTCCCATTTGC 60.749 57.895 7.64 0.00 0.00 3.68
672 962 4.133796 GGCGCTGTCCCATTTGCC 62.134 66.667 7.64 0.00 35.04 4.52
673 963 3.372730 GCGCTGTCCCATTTGCCA 61.373 61.111 0.00 0.00 0.00 4.92
674 964 2.879907 CGCTGTCCCATTTGCCAG 59.120 61.111 0.00 0.00 0.00 4.85
675 965 2.575461 GCTGTCCCATTTGCCAGC 59.425 61.111 0.00 0.00 42.94 4.85
676 966 3.010413 GCTGTCCCATTTGCCAGCC 62.010 63.158 0.00 0.00 43.45 4.85
677 967 2.283821 TGTCCCATTTGCCAGCCC 60.284 61.111 0.00 0.00 0.00 5.19
678 968 3.076916 GTCCCATTTGCCAGCCCC 61.077 66.667 0.00 0.00 0.00 5.80
679 969 3.275271 TCCCATTTGCCAGCCCCT 61.275 61.111 0.00 0.00 0.00 4.79
680 970 2.761213 CCCATTTGCCAGCCCCTC 60.761 66.667 0.00 0.00 0.00 4.30
681 971 2.361771 CCATTTGCCAGCCCCTCT 59.638 61.111 0.00 0.00 0.00 3.69
682 972 1.755783 CCATTTGCCAGCCCCTCTC 60.756 63.158 0.00 0.00 0.00 3.20
683 973 1.305623 CATTTGCCAGCCCCTCTCT 59.694 57.895 0.00 0.00 0.00 3.10
684 974 0.750911 CATTTGCCAGCCCCTCTCTC 60.751 60.000 0.00 0.00 0.00 3.20
685 975 0.918310 ATTTGCCAGCCCCTCTCTCT 60.918 55.000 0.00 0.00 0.00 3.10
686 976 1.557269 TTTGCCAGCCCCTCTCTCTC 61.557 60.000 0.00 0.00 0.00 3.20
687 977 3.160748 GCCAGCCCCTCTCTCTCC 61.161 72.222 0.00 0.00 0.00 3.71
688 978 2.445654 CCAGCCCCTCTCTCTCCC 60.446 72.222 0.00 0.00 0.00 4.30
689 979 2.445654 CAGCCCCTCTCTCTCCCC 60.446 72.222 0.00 0.00 0.00 4.81
690 980 2.623431 AGCCCCTCTCTCTCCCCT 60.623 66.667 0.00 0.00 0.00 4.79
691 981 2.123033 GCCCCTCTCTCTCCCCTC 60.123 72.222 0.00 0.00 0.00 4.30
692 982 2.710826 GCCCCTCTCTCTCCCCTCT 61.711 68.421 0.00 0.00 0.00 3.69
693 983 1.541672 CCCCTCTCTCTCCCCTCTC 59.458 68.421 0.00 0.00 0.00 3.20
694 984 1.541672 CCCTCTCTCTCCCCTCTCC 59.458 68.421 0.00 0.00 0.00 3.71
695 985 0.998945 CCCTCTCTCTCCCCTCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
696 986 0.478507 CCTCTCTCTCCCCTCTCCTC 59.521 65.000 0.00 0.00 0.00 3.71
697 987 1.522900 CTCTCTCTCCCCTCTCCTCT 58.477 60.000 0.00 0.00 0.00 3.69
698 988 1.421646 CTCTCTCTCCCCTCTCCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
699 989 0.478507 CTCTCTCCCCTCTCCTCTCC 59.521 65.000 0.00 0.00 0.00 3.71
700 990 0.047176 TCTCTCCCCTCTCCTCTCCT 59.953 60.000 0.00 0.00 0.00 3.69
701 991 0.933700 CTCTCCCCTCTCCTCTCCTT 59.066 60.000 0.00 0.00 0.00 3.36
702 992 1.290732 CTCTCCCCTCTCCTCTCCTTT 59.709 57.143 0.00 0.00 0.00 3.11
703 993 1.725182 TCTCCCCTCTCCTCTCCTTTT 59.275 52.381 0.00 0.00 0.00 2.27
704 994 2.114506 TCTCCCCTCTCCTCTCCTTTTT 59.885 50.000 0.00 0.00 0.00 1.94
705 995 2.503765 CTCCCCTCTCCTCTCCTTTTTC 59.496 54.545 0.00 0.00 0.00 2.29
706 996 2.114506 TCCCCTCTCCTCTCCTTTTTCT 59.885 50.000 0.00 0.00 0.00 2.52
707 997 2.503765 CCCCTCTCCTCTCCTTTTTCTC 59.496 54.545 0.00 0.00 0.00 2.87
708 998 3.449918 CCCTCTCCTCTCCTTTTTCTCT 58.550 50.000 0.00 0.00 0.00 3.10
709 999 3.197549 CCCTCTCCTCTCCTTTTTCTCTG 59.802 52.174 0.00 0.00 0.00 3.35
710 1000 3.837731 CCTCTCCTCTCCTTTTTCTCTGT 59.162 47.826 0.00 0.00 0.00 3.41
711 1001 5.020132 CCTCTCCTCTCCTTTTTCTCTGTA 58.980 45.833 0.00 0.00 0.00 2.74
712 1002 5.660864 CCTCTCCTCTCCTTTTTCTCTGTAT 59.339 44.000 0.00 0.00 0.00 2.29
713 1003 6.156083 CCTCTCCTCTCCTTTTTCTCTGTATT 59.844 42.308 0.00 0.00 0.00 1.89
714 1004 7.310983 CCTCTCCTCTCCTTTTTCTCTGTATTT 60.311 40.741 0.00 0.00 0.00 1.40
715 1005 7.616313 TCTCCTCTCCTTTTTCTCTGTATTTC 58.384 38.462 0.00 0.00 0.00 2.17
716 1006 7.456269 TCTCCTCTCCTTTTTCTCTGTATTTCT 59.544 37.037 0.00 0.00 0.00 2.52
717 1007 7.616313 TCCTCTCCTTTTTCTCTGTATTTCTC 58.384 38.462 0.00 0.00 0.00 2.87
718 1008 6.821160 CCTCTCCTTTTTCTCTGTATTTCTCC 59.179 42.308 0.00 0.00 0.00 3.71
719 1009 7.310983 CCTCTCCTTTTTCTCTGTATTTCTCCT 60.311 40.741 0.00 0.00 0.00 3.69
720 1010 7.616313 TCTCCTTTTTCTCTGTATTTCTCCTC 58.384 38.462 0.00 0.00 0.00 3.71
721 1011 7.456269 TCTCCTTTTTCTCTGTATTTCTCCTCT 59.544 37.037 0.00 0.00 0.00 3.69
722 1012 7.616313 TCCTTTTTCTCTGTATTTCTCCTCTC 58.384 38.462 0.00 0.00 0.00 3.20
723 1013 7.456269 TCCTTTTTCTCTGTATTTCTCCTCTCT 59.544 37.037 0.00 0.00 0.00 3.10
724 1014 7.763985 CCTTTTTCTCTGTATTTCTCCTCTCTC 59.236 40.741 0.00 0.00 0.00 3.20
725 1015 6.783708 TTTCTCTGTATTTCTCCTCTCTCC 57.216 41.667 0.00 0.00 0.00 3.71
726 1016 5.725551 TCTCTGTATTTCTCCTCTCTCCT 57.274 43.478 0.00 0.00 0.00 3.69
727 1017 6.086011 TCTCTGTATTTCTCCTCTCTCCTT 57.914 41.667 0.00 0.00 0.00 3.36
728 1018 6.498538 TCTCTGTATTTCTCCTCTCTCCTTT 58.501 40.000 0.00 0.00 0.00 3.11
729 1019 6.605594 TCTCTGTATTTCTCCTCTCTCCTTTC 59.394 42.308 0.00 0.00 0.00 2.62
730 1020 5.659079 TCTGTATTTCTCCTCTCTCCTTTCC 59.341 44.000 0.00 0.00 0.00 3.13
731 1021 5.594777 TGTATTTCTCCTCTCTCCTTTCCT 58.405 41.667 0.00 0.00 0.00 3.36
732 1022 6.026186 TGTATTTCTCCTCTCTCCTTTCCTT 58.974 40.000 0.00 0.00 0.00 3.36
733 1023 7.189794 TGTATTTCTCCTCTCTCCTTTCCTTA 58.810 38.462 0.00 0.00 0.00 2.69
734 1024 7.846823 TGTATTTCTCCTCTCTCCTTTCCTTAT 59.153 37.037 0.00 0.00 0.00 1.73
735 1025 6.800072 TTTCTCCTCTCTCCTTTCCTTATC 57.200 41.667 0.00 0.00 0.00 1.75
736 1026 4.810345 TCTCCTCTCTCCTTTCCTTATCC 58.190 47.826 0.00 0.00 0.00 2.59
737 1027 4.484270 TCTCCTCTCTCCTTTCCTTATCCT 59.516 45.833 0.00 0.00 0.00 3.24
738 1028 5.042979 TCTCCTCTCTCCTTTCCTTATCCTT 60.043 44.000 0.00 0.00 0.00 3.36
739 1029 5.212745 TCCTCTCTCCTTTCCTTATCCTTC 58.787 45.833 0.00 0.00 0.00 3.46
740 1030 4.346709 CCTCTCTCCTTTCCTTATCCTTCC 59.653 50.000 0.00 0.00 0.00 3.46
741 1031 3.961408 TCTCTCCTTTCCTTATCCTTCCG 59.039 47.826 0.00 0.00 0.00 4.30
742 1032 2.434702 TCTCCTTTCCTTATCCTTCCGC 59.565 50.000 0.00 0.00 0.00 5.54
743 1033 1.489230 TCCTTTCCTTATCCTTCCGCC 59.511 52.381 0.00 0.00 0.00 6.13
744 1034 1.211949 CCTTTCCTTATCCTTCCGCCA 59.788 52.381 0.00 0.00 0.00 5.69
745 1035 2.289565 CTTTCCTTATCCTTCCGCCAC 58.710 52.381 0.00 0.00 0.00 5.01
746 1036 0.544697 TTCCTTATCCTTCCGCCACC 59.455 55.000 0.00 0.00 0.00 4.61
747 1037 0.619255 TCCTTATCCTTCCGCCACCA 60.619 55.000 0.00 0.00 0.00 4.17
748 1038 0.254747 CCTTATCCTTCCGCCACCAA 59.745 55.000 0.00 0.00 0.00 3.67
749 1039 1.379527 CTTATCCTTCCGCCACCAAC 58.620 55.000 0.00 0.00 0.00 3.77
750 1040 0.034863 TTATCCTTCCGCCACCAACC 60.035 55.000 0.00 0.00 0.00 3.77
751 1041 1.202099 TATCCTTCCGCCACCAACCA 61.202 55.000 0.00 0.00 0.00 3.67
752 1042 2.764637 ATCCTTCCGCCACCAACCAC 62.765 60.000 0.00 0.00 0.00 4.16
753 1043 2.983592 CTTCCGCCACCAACCACC 60.984 66.667 0.00 0.00 0.00 4.61
754 1044 4.589675 TTCCGCCACCAACCACCC 62.590 66.667 0.00 0.00 0.00 4.61
759 1049 4.198224 CCACCAACCACCCACCGT 62.198 66.667 0.00 0.00 0.00 4.83
760 1050 2.593436 CACCAACCACCCACCGTC 60.593 66.667 0.00 0.00 0.00 4.79
761 1051 4.244463 ACCAACCACCCACCGTCG 62.244 66.667 0.00 0.00 0.00 5.12
762 1052 4.244463 CCAACCACCCACCGTCGT 62.244 66.667 0.00 0.00 0.00 4.34
763 1053 2.970324 CAACCACCCACCGTCGTG 60.970 66.667 0.00 0.00 39.91 4.35
771 1061 4.742201 CACCGTCGTGGCCTCAGG 62.742 72.222 3.32 6.86 43.94 3.86
781 1071 3.160748 GCCTCAGGCCTCCTCCTC 61.161 72.222 3.37 0.00 44.06 3.71
782 1072 2.837291 CCTCAGGCCTCCTCCTCG 60.837 72.222 0.00 0.00 33.25 4.63
783 1073 3.535962 CTCAGGCCTCCTCCTCGC 61.536 72.222 0.00 0.00 33.25 5.03
822 1112 3.151022 CCTCCACGGCCTCCTCTC 61.151 72.222 0.00 0.00 0.00 3.20
823 1113 3.522731 CTCCACGGCCTCCTCTCG 61.523 72.222 0.00 0.00 0.00 4.04
832 1122 4.150454 CTCCTCTCGCCCTCCCCT 62.150 72.222 0.00 0.00 0.00 4.79
833 1123 4.144727 TCCTCTCGCCCTCCCCTC 62.145 72.222 0.00 0.00 0.00 4.30
834 1124 4.465446 CCTCTCGCCCTCCCCTCA 62.465 72.222 0.00 0.00 0.00 3.86
835 1125 3.151022 CTCTCGCCCTCCCCTCAC 61.151 72.222 0.00 0.00 0.00 3.51
836 1126 4.779733 TCTCGCCCTCCCCTCACC 62.780 72.222 0.00 0.00 0.00 4.02
876 1166 3.801997 CCGCTGGATGCCTTCCCT 61.802 66.667 0.66 0.00 44.77 4.20
877 1167 2.515523 CGCTGGATGCCTTCCCTG 60.516 66.667 0.66 0.00 44.77 4.45
878 1168 2.832201 GCTGGATGCCTTCCCTGC 60.832 66.667 0.00 0.00 44.77 4.85
879 1169 3.004951 CTGGATGCCTTCCCTGCT 58.995 61.111 0.66 0.00 44.77 4.24
880 1170 1.453379 CTGGATGCCTTCCCTGCTG 60.453 63.158 0.66 0.00 44.77 4.41
881 1171 2.832201 GGATGCCTTCCCTGCTGC 60.832 66.667 0.00 0.00 38.75 5.25
882 1172 3.207669 GATGCCTTCCCTGCTGCG 61.208 66.667 0.00 0.00 0.00 5.18
883 1173 4.809496 ATGCCTTCCCTGCTGCGG 62.809 66.667 0.26 0.26 0.00 5.69
887 1177 3.785859 CTTCCCTGCTGCGGCCTA 61.786 66.667 16.57 0.00 37.74 3.93
888 1178 3.746949 CTTCCCTGCTGCGGCCTAG 62.747 68.421 16.57 6.46 37.74 3.02
890 1180 4.845580 CCCTGCTGCGGCCTAGTG 62.846 72.222 16.57 0.00 37.74 2.74
891 1181 4.087892 CCTGCTGCGGCCTAGTGT 62.088 66.667 16.57 0.00 37.74 3.55
892 1182 2.816958 CTGCTGCGGCCTAGTGTG 60.817 66.667 16.57 0.00 37.74 3.82
893 1183 3.596066 CTGCTGCGGCCTAGTGTGT 62.596 63.158 16.57 0.00 37.74 3.72
894 1184 2.358737 GCTGCGGCCTAGTGTGTT 60.359 61.111 6.12 0.00 0.00 3.32
895 1185 2.680913 GCTGCGGCCTAGTGTGTTG 61.681 63.158 6.12 0.00 0.00 3.33
896 1186 2.668212 TGCGGCCTAGTGTGTTGC 60.668 61.111 0.00 0.00 0.00 4.17
897 1187 3.788766 GCGGCCTAGTGTGTTGCG 61.789 66.667 0.00 0.00 0.00 4.85
898 1188 3.118454 CGGCCTAGTGTGTTGCGG 61.118 66.667 0.00 0.00 0.00 5.69
899 1189 3.431725 GGCCTAGTGTGTTGCGGC 61.432 66.667 0.00 0.00 39.98 6.53
900 1190 3.788766 GCCTAGTGTGTTGCGGCG 61.789 66.667 0.51 0.51 0.00 6.46
901 1191 2.357034 CCTAGTGTGTTGCGGCGT 60.357 61.111 9.37 0.00 0.00 5.68
902 1192 2.380410 CCTAGTGTGTTGCGGCGTC 61.380 63.158 9.37 0.91 0.00 5.19
903 1193 2.716828 CTAGTGTGTTGCGGCGTCG 61.717 63.158 4.29 4.29 39.81 5.12
950 1240 4.729918 CTGGCCGCCTTTCCTGCT 62.730 66.667 11.61 0.00 0.00 4.24
951 1241 4.722700 TGGCCGCCTTTCCTGCTC 62.723 66.667 11.61 0.00 0.00 4.26
954 1244 2.815647 CCGCCTTTCCTGCTCGTC 60.816 66.667 0.00 0.00 0.00 4.20
955 1245 2.815647 CGCCTTTCCTGCTCGTCC 60.816 66.667 0.00 0.00 0.00 4.79
956 1246 2.815647 GCCTTTCCTGCTCGTCCG 60.816 66.667 0.00 0.00 0.00 4.79
957 1247 2.815647 CCTTTCCTGCTCGTCCGC 60.816 66.667 0.00 0.00 0.00 5.54
958 1248 2.815647 CTTTCCTGCTCGTCCGCC 60.816 66.667 0.00 0.00 0.00 6.13
959 1249 4.388499 TTTCCTGCTCGTCCGCCC 62.388 66.667 0.00 0.00 0.00 6.13
984 1274 4.072088 CGCTCACCGCCGTTGAAC 62.072 66.667 0.00 0.00 34.21 3.18
985 1275 3.723348 GCTCACCGCCGTTGAACC 61.723 66.667 0.00 0.00 0.00 3.62
986 1276 3.047877 CTCACCGCCGTTGAACCC 61.048 66.667 0.00 0.00 0.00 4.11
987 1277 4.973055 TCACCGCCGTTGAACCCG 62.973 66.667 0.00 0.00 0.00 5.28
1008 1298 4.147322 CGCGTCGCCATGGACAAC 62.147 66.667 18.40 8.72 36.73 3.32
1009 1299 3.047280 GCGTCGCCATGGACAACA 61.047 61.111 18.40 0.00 36.73 3.33
1010 1300 2.860293 CGTCGCCATGGACAACAC 59.140 61.111 18.40 2.38 36.73 3.32
1011 1301 2.677003 CGTCGCCATGGACAACACC 61.677 63.158 18.40 0.00 36.73 4.16
1012 1302 2.358125 TCGCCATGGACAACACCG 60.358 61.111 18.40 7.71 0.00 4.94
1013 1303 4.101790 CGCCATGGACAACACCGC 62.102 66.667 18.40 0.00 0.00 5.68
1014 1304 3.747976 GCCATGGACAACACCGCC 61.748 66.667 18.40 0.00 0.00 6.13
1015 1305 3.430862 CCATGGACAACACCGCCG 61.431 66.667 5.56 0.00 0.00 6.46
1016 1306 2.668212 CATGGACAACACCGCCGT 60.668 61.111 0.00 0.00 0.00 5.68
1017 1307 2.358247 ATGGACAACACCGCCGTC 60.358 61.111 0.00 0.00 0.00 4.79
1018 1308 4.953868 TGGACAACACCGCCGTCG 62.954 66.667 0.00 0.00 0.00 5.12
1030 1320 4.554363 CCGTCGCCAGCTACTCGG 62.554 72.222 0.00 0.00 0.00 4.63
1031 1321 3.812019 CGTCGCCAGCTACTCGGT 61.812 66.667 0.00 0.00 0.00 4.69
1032 1322 2.102553 GTCGCCAGCTACTCGGTC 59.897 66.667 0.00 0.00 0.00 4.79
1033 1323 3.138798 TCGCCAGCTACTCGGTCC 61.139 66.667 0.00 0.00 0.00 4.46
1034 1324 4.208686 CGCCAGCTACTCGGTCCC 62.209 72.222 0.00 0.00 0.00 4.46
1035 1325 3.851128 GCCAGCTACTCGGTCCCC 61.851 72.222 0.00 0.00 0.00 4.81
1036 1326 2.363795 CCAGCTACTCGGTCCCCA 60.364 66.667 0.00 0.00 0.00 4.96
1037 1327 2.427245 CCAGCTACTCGGTCCCCAG 61.427 68.421 0.00 0.00 0.00 4.45
1038 1328 2.042843 AGCTACTCGGTCCCCAGG 60.043 66.667 0.00 0.00 0.00 4.45
1039 1329 3.155167 GCTACTCGGTCCCCAGGG 61.155 72.222 0.00 0.00 0.00 4.45
1040 1330 2.444140 CTACTCGGTCCCCAGGGG 60.444 72.222 20.55 20.55 46.11 4.79
1050 1340 3.732849 CCCAGGGGAAGCCAGGTC 61.733 72.222 0.00 0.00 37.50 3.85
1051 1341 4.101448 CCAGGGGAAGCCAGGTCG 62.101 72.222 0.00 0.00 0.00 4.79
1052 1342 3.322466 CAGGGGAAGCCAGGTCGT 61.322 66.667 0.00 0.00 0.00 4.34
1053 1343 3.003763 AGGGGAAGCCAGGTCGTC 61.004 66.667 0.00 0.00 0.00 4.20
1054 1344 4.097361 GGGGAAGCCAGGTCGTCC 62.097 72.222 7.14 7.14 34.47 4.79
1055 1345 3.003763 GGGAAGCCAGGTCGTCCT 61.004 66.667 13.02 0.00 46.37 3.85
1064 1354 4.148825 GGTCGTCCTGAGCCGCAT 62.149 66.667 0.00 0.00 39.22 4.73
1065 1355 2.583593 GTCGTCCTGAGCCGCATC 60.584 66.667 0.00 0.00 0.00 3.91
1066 1356 4.193334 TCGTCCTGAGCCGCATCG 62.193 66.667 0.00 0.00 0.00 3.84
1116 1406 3.003173 CCTCTCGGGTTCTGGCCA 61.003 66.667 4.71 4.71 0.00 5.36
1243 1533 1.021390 CACCCTCTTCACCGTCATGC 61.021 60.000 0.00 0.00 0.00 4.06
1320 1610 0.252881 TGTGCCCAAGATCCTCTCCT 60.253 55.000 0.00 0.00 0.00 3.69
1364 1654 4.511636 CTCCTTTGAGAGCGAGGC 57.488 61.111 0.00 0.00 41.42 4.70
1365 1655 1.153469 CTCCTTTGAGAGCGAGGCC 60.153 63.158 0.00 0.00 41.42 5.19
1366 1656 2.510238 CCTTTGAGAGCGAGGCCG 60.510 66.667 0.00 0.00 39.16 6.13
1367 1657 2.573869 CTTTGAGAGCGAGGCCGA 59.426 61.111 0.00 0.00 38.22 5.54
1368 1658 1.807573 CTTTGAGAGCGAGGCCGAC 60.808 63.158 0.00 0.00 38.22 4.79
1369 1659 3.626680 TTTGAGAGCGAGGCCGACG 62.627 63.158 18.27 18.27 38.22 5.12
1371 1661 4.244802 GAGAGCGAGGCCGACGAG 62.245 72.222 24.70 5.70 38.22 4.18
1402 1692 0.388659 CCTTGAGAGCTGGAGATCCG 59.611 60.000 0.00 0.00 39.43 4.18
1446 1736 3.329889 TGGACAAGATGGCGGCCT 61.330 61.111 21.46 5.57 0.00 5.19
1450 1740 2.753043 CAAGATGGCGGCCTTGCT 60.753 61.111 21.46 11.50 34.20 3.91
1492 1782 1.990060 AGGACATCCTGGACGGTGG 60.990 63.158 0.00 0.00 46.55 4.61
1493 1783 2.125106 GACATCCTGGACGGTGGC 60.125 66.667 0.00 0.00 0.00 5.01
1551 1841 2.687566 AAGCCCCGGTCGAGGATT 60.688 61.111 0.00 0.00 0.00 3.01
1610 1900 3.996744 CGAAGACGGCGTCGGAGAC 62.997 68.421 31.59 20.32 44.55 3.36
1627 1917 2.044252 CGGAGGAGGAGGACGGAA 60.044 66.667 0.00 0.00 0.00 4.30
1680 1971 2.875485 GGCTCACGCTCGTACTCA 59.125 61.111 0.00 0.00 36.09 3.41
1681 1972 1.514443 GGCTCACGCTCGTACTCAC 60.514 63.158 0.00 0.00 36.09 3.51
1750 2072 1.208259 GCACGGCTGGAAACTTTTTG 58.792 50.000 0.00 0.00 0.00 2.44
1767 2089 1.813102 TTGACCCCCAAGCCAAAAAT 58.187 45.000 0.00 0.00 0.00 1.82
1768 2090 1.813102 TGACCCCCAAGCCAAAAATT 58.187 45.000 0.00 0.00 0.00 1.82
1769 2091 1.696884 TGACCCCCAAGCCAAAAATTC 59.303 47.619 0.00 0.00 0.00 2.17
1771 2093 1.063183 CCCCCAAGCCAAAAATTCCA 58.937 50.000 0.00 0.00 0.00 3.53
1772 2094 1.271325 CCCCCAAGCCAAAAATTCCAC 60.271 52.381 0.00 0.00 0.00 4.02
1773 2095 1.607767 CCCCAAGCCAAAAATTCCACG 60.608 52.381 0.00 0.00 0.00 4.94
1774 2096 1.069978 CCCAAGCCAAAAATTCCACGT 59.930 47.619 0.00 0.00 0.00 4.49
1776 2098 1.526464 CAAGCCAAAAATTCCACGTGC 59.474 47.619 10.91 0.00 0.00 5.34
1777 2099 0.749649 AGCCAAAAATTCCACGTGCA 59.250 45.000 10.91 0.00 0.00 4.57
1778 2100 1.139163 GCCAAAAATTCCACGTGCAG 58.861 50.000 10.91 0.00 0.00 4.41
1779 2101 1.537990 GCCAAAAATTCCACGTGCAGT 60.538 47.619 10.91 0.00 0.00 4.40
1783 2105 0.893727 AAATTCCACGTGCAGTCCCC 60.894 55.000 10.91 0.00 0.00 4.81
1784 2106 2.063015 AATTCCACGTGCAGTCCCCA 62.063 55.000 10.91 0.00 0.00 4.96
1785 2107 2.469465 ATTCCACGTGCAGTCCCCAG 62.469 60.000 10.91 0.00 0.00 4.45
1786 2108 4.704833 CCACGTGCAGTCCCCAGG 62.705 72.222 10.91 0.00 0.00 4.45
1881 2206 1.226018 GCGCACTAATGGTTCACGC 60.226 57.895 0.30 0.00 35.88 5.34
1970 4024 4.745620 GCTAAGCTACTGTTTAGGAATCCG 59.254 45.833 0.00 0.00 37.43 4.18
1974 4028 6.919775 AGCTACTGTTTAGGAATCCGATAT 57.080 37.500 0.00 0.00 0.00 1.63
2058 4120 7.615582 TTGTCTTGAAGTAGCTATCCAAATG 57.384 36.000 0.00 0.00 0.00 2.32
2062 4124 5.957771 TGAAGTAGCTATCCAAATGTCCT 57.042 39.130 0.00 0.00 0.00 3.85
2133 4195 4.251268 CATCTCTGCATTCTTGAGTGACA 58.749 43.478 0.00 0.00 0.00 3.58
2174 4240 4.543590 ATCCCTCGCGAATATGATTTCT 57.456 40.909 11.33 0.00 0.00 2.52
2254 4320 6.726490 ATATTTCTTTGCAAGCAGATGGAT 57.274 33.333 0.00 0.00 0.00 3.41
2255 4321 3.861276 TTCTTTGCAAGCAGATGGATG 57.139 42.857 0.00 0.00 0.00 3.51
2355 4426 9.753674 TGTTATCTTCCTTTTTCCATGATACTT 57.246 29.630 0.00 0.00 0.00 2.24
2365 4436 8.842358 TTTTTCCATGATACTTCGTTTACTCT 57.158 30.769 0.00 0.00 0.00 3.24
2373 4444 4.780275 ACTTCGTTTACTCTAGTGGTCC 57.220 45.455 0.00 0.00 0.00 4.46
2380 4451 5.619533 CGTTTACTCTAGTGGTCCAGACTTC 60.620 48.000 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 4.489771 ACATGTAGGGCAGGCGGC 62.490 66.667 0.00 0.00 43.74 6.53
55 62 3.431725 GTGGTAGCTTGCGTGGGC 61.432 66.667 0.00 0.00 40.52 5.36
78 85 2.987125 GCGTCCCTAGGAAAGCCA 59.013 61.111 11.48 0.00 33.52 4.75
87 94 3.511595 CGGCAGTACGCGTCCCTA 61.512 66.667 18.63 0.00 43.84 3.53
167 444 2.440796 CCCGTCAATGGCCAGCAT 60.441 61.111 13.05 0.00 0.00 3.79
215 502 1.675116 CCACTGTCAGTGCCTCATCTG 60.675 57.143 25.00 7.25 44.63 2.90
244 531 1.968017 ACGCCGACTACGACCTCAA 60.968 57.895 0.00 0.00 42.66 3.02
249 536 3.170585 GTGCACGCCGACTACGAC 61.171 66.667 0.00 0.00 42.66 4.34
251 538 2.019951 AAAGTGCACGCCGACTACG 61.020 57.895 12.01 0.00 39.43 3.51
256 543 3.276091 CACCAAAGTGCACGCCGA 61.276 61.111 12.01 0.00 37.14 5.54
332 619 3.135994 GTTGCAGAAAAGACTTACCGGA 58.864 45.455 9.46 0.00 0.00 5.14
341 628 4.895297 AGAAAATGGGAGTTGCAGAAAAGA 59.105 37.500 0.00 0.00 0.00 2.52
353 640 6.266330 AGAAAGGTGAAAAGAGAAAATGGGAG 59.734 38.462 0.00 0.00 0.00 4.30
429 719 1.739608 AAATGGAACTGGGGCTGGGT 61.740 55.000 0.00 0.00 0.00 4.51
434 724 0.037046 CTTGCAAATGGAACTGGGGC 60.037 55.000 0.00 0.00 0.00 5.80
462 752 5.202004 GGTCCTAGTGGAGATGTTCTTAGA 58.798 45.833 0.00 0.00 44.16 2.10
463 753 4.342665 GGGTCCTAGTGGAGATGTTCTTAG 59.657 50.000 0.00 0.00 44.16 2.18
464 754 4.264668 TGGGTCCTAGTGGAGATGTTCTTA 60.265 45.833 0.00 0.00 44.16 2.10
465 755 3.108376 GGGTCCTAGTGGAGATGTTCTT 58.892 50.000 0.00 0.00 44.16 2.52
466 756 2.044492 TGGGTCCTAGTGGAGATGTTCT 59.956 50.000 0.00 0.00 44.16 3.01
467 757 2.432510 CTGGGTCCTAGTGGAGATGTTC 59.567 54.545 0.00 0.00 44.16 3.18
468 758 2.472029 CTGGGTCCTAGTGGAGATGTT 58.528 52.381 0.00 0.00 44.16 2.71
469 759 1.343478 CCTGGGTCCTAGTGGAGATGT 60.343 57.143 1.02 0.00 44.16 3.06
470 760 1.062886 TCCTGGGTCCTAGTGGAGATG 60.063 57.143 1.02 0.00 44.16 2.90
471 761 1.062810 GTCCTGGGTCCTAGTGGAGAT 60.063 57.143 1.02 0.00 44.16 2.75
472 762 0.335361 GTCCTGGGTCCTAGTGGAGA 59.665 60.000 1.02 0.00 44.16 3.71
473 763 1.038130 CGTCCTGGGTCCTAGTGGAG 61.038 65.000 1.02 0.00 44.16 3.86
474 764 1.000019 CGTCCTGGGTCCTAGTGGA 60.000 63.158 1.02 0.00 40.69 4.02
475 765 2.722201 GCGTCCTGGGTCCTAGTGG 61.722 68.421 1.02 0.00 0.00 4.00
476 766 2.722201 GGCGTCCTGGGTCCTAGTG 61.722 68.421 1.02 0.00 0.00 2.74
477 767 2.363925 GGCGTCCTGGGTCCTAGT 60.364 66.667 1.02 0.00 0.00 2.57
478 768 3.155167 GGGCGTCCTGGGTCCTAG 61.155 72.222 0.00 0.00 0.00 3.02
479 769 4.791069 GGGGCGTCCTGGGTCCTA 62.791 72.222 5.77 0.00 0.00 2.94
536 826 2.692368 TCTTGGGGGCCTGGCTAG 60.692 66.667 19.68 8.52 0.00 3.42
537 827 3.015145 GTCTTGGGGGCCTGGCTA 61.015 66.667 19.68 0.00 0.00 3.93
540 830 4.410400 GACGTCTTGGGGGCCTGG 62.410 72.222 8.70 0.00 0.00 4.45
541 831 4.760047 CGACGTCTTGGGGGCCTG 62.760 72.222 14.70 0.00 0.00 4.85
543 833 3.837570 AAACGACGTCTTGGGGGCC 62.838 63.158 14.70 0.00 0.00 5.80
544 834 1.895231 AAAACGACGTCTTGGGGGC 60.895 57.895 14.70 0.00 0.00 5.80
545 835 1.946267 CAAAACGACGTCTTGGGGG 59.054 57.895 14.70 0.00 0.00 5.40
546 836 1.281656 GCAAAACGACGTCTTGGGG 59.718 57.895 15.34 0.00 0.00 4.96
547 837 0.591170 ATGCAAAACGACGTCTTGGG 59.409 50.000 15.34 0.00 0.00 4.12
548 838 1.721489 CGATGCAAAACGACGTCTTGG 60.721 52.381 15.34 0.47 0.00 3.61
549 839 1.580439 CGATGCAAAACGACGTCTTG 58.420 50.000 14.70 9.68 0.00 3.02
550 840 0.511221 CCGATGCAAAACGACGTCTT 59.489 50.000 14.70 0.03 0.00 3.01
551 841 0.319211 TCCGATGCAAAACGACGTCT 60.319 50.000 14.70 0.00 0.00 4.18
552 842 0.719465 ATCCGATGCAAAACGACGTC 59.281 50.000 5.18 5.18 0.00 4.34
553 843 1.153353 AATCCGATGCAAAACGACGT 58.847 45.000 11.69 0.00 0.00 4.34
554 844 2.241259 AAATCCGATGCAAAACGACG 57.759 45.000 11.69 0.00 0.00 5.12
555 845 2.090503 GCAAAATCCGATGCAAAACGAC 59.909 45.455 11.69 0.00 42.12 4.34
556 846 2.323959 GCAAAATCCGATGCAAAACGA 58.676 42.857 11.69 0.00 42.12 3.85
557 847 2.767566 GCAAAATCCGATGCAAAACG 57.232 45.000 0.00 0.00 42.12 3.60
563 853 6.242829 CACTAATTTTTGCAAAATCCGATGC 58.757 36.000 24.39 0.00 42.86 3.91
564 854 6.128607 TGCACTAATTTTTGCAAAATCCGATG 60.129 34.615 24.39 19.31 45.65 3.84
565 855 5.931146 TGCACTAATTTTTGCAAAATCCGAT 59.069 32.000 24.39 12.57 45.65 4.18
566 856 5.292765 TGCACTAATTTTTGCAAAATCCGA 58.707 33.333 24.39 10.75 45.65 4.55
567 857 5.588568 TGCACTAATTTTTGCAAAATCCG 57.411 34.783 24.39 15.11 45.65 4.18
575 865 2.472723 GCGTGCATGCACTAATTTTTGC 60.473 45.455 39.46 30.13 44.16 3.68
576 866 2.092524 GGCGTGCATGCACTAATTTTTG 59.907 45.455 39.46 25.75 44.16 2.44
577 867 2.336667 GGCGTGCATGCACTAATTTTT 58.663 42.857 39.46 0.00 44.16 1.94
578 868 1.404047 GGGCGTGCATGCACTAATTTT 60.404 47.619 39.46 0.00 44.16 1.82
579 869 0.173255 GGGCGTGCATGCACTAATTT 59.827 50.000 39.46 0.00 44.16 1.82
580 870 0.964860 TGGGCGTGCATGCACTAATT 60.965 50.000 39.46 0.00 44.16 1.40
581 871 1.378382 TGGGCGTGCATGCACTAAT 60.378 52.632 39.46 0.00 44.16 1.73
582 872 2.033294 TGGGCGTGCATGCACTAA 59.967 55.556 39.46 23.42 44.16 2.24
583 873 2.745884 GTGGGCGTGCATGCACTA 60.746 61.111 39.46 24.07 44.16 2.74
625 915 3.574074 AATGCCTGCGTTCCCAGCT 62.574 57.895 0.00 0.00 35.28 4.24
626 916 2.639327 AAATGCCTGCGTTCCCAGC 61.639 57.895 0.00 0.00 0.00 4.85
627 917 1.213537 CAAATGCCTGCGTTCCCAG 59.786 57.895 0.00 0.00 0.00 4.45
628 918 2.929903 GCAAATGCCTGCGTTCCCA 61.930 57.895 0.00 0.00 31.50 4.37
629 919 2.125952 GCAAATGCCTGCGTTCCC 60.126 61.111 0.00 0.00 31.50 3.97
635 925 2.738314 CCTACAAAAAGCAAATGCCTGC 59.262 45.455 0.94 0.00 43.38 4.85
636 926 2.738314 GCCTACAAAAAGCAAATGCCTG 59.262 45.455 0.94 0.00 43.38 4.85
637 927 2.610232 CGCCTACAAAAAGCAAATGCCT 60.610 45.455 0.94 0.00 43.38 4.75
638 928 1.726248 CGCCTACAAAAAGCAAATGCC 59.274 47.619 0.94 0.00 43.38 4.40
639 929 1.126662 GCGCCTACAAAAAGCAAATGC 59.873 47.619 0.00 0.00 42.49 3.56
640 930 2.409378 CAGCGCCTACAAAAAGCAAATG 59.591 45.455 2.29 0.00 0.00 2.32
641 931 2.035832 ACAGCGCCTACAAAAAGCAAAT 59.964 40.909 2.29 0.00 0.00 2.32
642 932 1.407258 ACAGCGCCTACAAAAAGCAAA 59.593 42.857 2.29 0.00 0.00 3.68
643 933 1.001815 GACAGCGCCTACAAAAAGCAA 60.002 47.619 2.29 0.00 0.00 3.91
644 934 0.591170 GACAGCGCCTACAAAAAGCA 59.409 50.000 2.29 0.00 0.00 3.91
645 935 0.109735 GGACAGCGCCTACAAAAAGC 60.110 55.000 2.29 0.00 0.00 3.51
646 936 0.521735 GGGACAGCGCCTACAAAAAG 59.478 55.000 2.29 0.00 0.00 2.27
647 937 0.179015 TGGGACAGCGCCTACAAAAA 60.179 50.000 2.29 0.00 0.00 1.94
648 938 1.452368 TGGGACAGCGCCTACAAAA 59.548 52.632 2.29 0.00 0.00 2.44
649 939 3.152865 TGGGACAGCGCCTACAAA 58.847 55.556 2.29 0.00 0.00 2.83
661 951 3.076916 GGGGCTGGCAAATGGGAC 61.077 66.667 2.88 0.00 0.00 4.46
662 952 3.275271 AGGGGCTGGCAAATGGGA 61.275 61.111 2.88 0.00 0.00 4.37
663 953 2.761213 GAGGGGCTGGCAAATGGG 60.761 66.667 2.88 0.00 0.00 4.00
664 954 1.755783 GAGAGGGGCTGGCAAATGG 60.756 63.158 2.88 0.00 0.00 3.16
665 955 0.750911 GAGAGAGGGGCTGGCAAATG 60.751 60.000 2.88 0.00 0.00 2.32
666 956 0.918310 AGAGAGAGGGGCTGGCAAAT 60.918 55.000 2.88 0.00 0.00 2.32
667 957 1.539869 AGAGAGAGGGGCTGGCAAA 60.540 57.895 2.88 0.00 0.00 3.68
668 958 1.992277 GAGAGAGAGGGGCTGGCAA 60.992 63.158 2.88 0.00 0.00 4.52
669 959 2.364842 GAGAGAGAGGGGCTGGCA 60.365 66.667 2.88 0.00 0.00 4.92
670 960 3.160748 GGAGAGAGAGGGGCTGGC 61.161 72.222 0.00 0.00 0.00 4.85
671 961 2.445654 GGGAGAGAGAGGGGCTGG 60.446 72.222 0.00 0.00 0.00 4.85
672 962 2.445654 GGGGAGAGAGAGGGGCTG 60.446 72.222 0.00 0.00 0.00 4.85
673 963 2.623431 AGGGGAGAGAGAGGGGCT 60.623 66.667 0.00 0.00 0.00 5.19
674 964 2.123033 GAGGGGAGAGAGAGGGGC 60.123 72.222 0.00 0.00 0.00 5.80
675 965 1.541672 GAGAGGGGAGAGAGAGGGG 59.458 68.421 0.00 0.00 0.00 4.79
676 966 0.998945 AGGAGAGGGGAGAGAGAGGG 60.999 65.000 0.00 0.00 0.00 4.30
677 967 0.478507 GAGGAGAGGGGAGAGAGAGG 59.521 65.000 0.00 0.00 0.00 3.69
678 968 1.421646 GAGAGGAGAGGGGAGAGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
679 969 1.518367 GAGAGGAGAGGGGAGAGAGA 58.482 60.000 0.00 0.00 0.00 3.10
680 970 0.478507 GGAGAGGAGAGGGGAGAGAG 59.521 65.000 0.00 0.00 0.00 3.20
681 971 0.047176 AGGAGAGGAGAGGGGAGAGA 59.953 60.000 0.00 0.00 0.00 3.10
682 972 0.933700 AAGGAGAGGAGAGGGGAGAG 59.066 60.000 0.00 0.00 0.00 3.20
683 973 1.398799 AAAGGAGAGGAGAGGGGAGA 58.601 55.000 0.00 0.00 0.00 3.71
684 974 2.262266 AAAAGGAGAGGAGAGGGGAG 57.738 55.000 0.00 0.00 0.00 4.30
685 975 2.114506 AGAAAAAGGAGAGGAGAGGGGA 59.885 50.000 0.00 0.00 0.00 4.81
686 976 2.503765 GAGAAAAAGGAGAGGAGAGGGG 59.496 54.545 0.00 0.00 0.00 4.79
687 977 3.197549 CAGAGAAAAAGGAGAGGAGAGGG 59.802 52.174 0.00 0.00 0.00 4.30
688 978 3.837731 ACAGAGAAAAAGGAGAGGAGAGG 59.162 47.826 0.00 0.00 0.00 3.69
689 979 6.790232 ATACAGAGAAAAAGGAGAGGAGAG 57.210 41.667 0.00 0.00 0.00 3.20
690 980 7.456269 AGAAATACAGAGAAAAAGGAGAGGAGA 59.544 37.037 0.00 0.00 0.00 3.71
691 981 7.619965 AGAAATACAGAGAAAAAGGAGAGGAG 58.380 38.462 0.00 0.00 0.00 3.69
692 982 7.310734 GGAGAAATACAGAGAAAAAGGAGAGGA 60.311 40.741 0.00 0.00 0.00 3.71
693 983 6.821160 GGAGAAATACAGAGAAAAAGGAGAGG 59.179 42.308 0.00 0.00 0.00 3.69
694 984 7.619965 AGGAGAAATACAGAGAAAAAGGAGAG 58.380 38.462 0.00 0.00 0.00 3.20
695 985 7.456269 AGAGGAGAAATACAGAGAAAAAGGAGA 59.544 37.037 0.00 0.00 0.00 3.71
696 986 7.619965 AGAGGAGAAATACAGAGAAAAAGGAG 58.380 38.462 0.00 0.00 0.00 3.69
697 987 7.456269 AGAGAGGAGAAATACAGAGAAAAAGGA 59.544 37.037 0.00 0.00 0.00 3.36
698 988 7.619965 AGAGAGGAGAAATACAGAGAAAAAGG 58.380 38.462 0.00 0.00 0.00 3.11
699 989 7.763985 GGAGAGAGGAGAAATACAGAGAAAAAG 59.236 40.741 0.00 0.00 0.00 2.27
700 990 7.456269 AGGAGAGAGGAGAAATACAGAGAAAAA 59.544 37.037 0.00 0.00 0.00 1.94
701 991 6.957020 AGGAGAGAGGAGAAATACAGAGAAAA 59.043 38.462 0.00 0.00 0.00 2.29
702 992 6.498538 AGGAGAGAGGAGAAATACAGAGAAA 58.501 40.000 0.00 0.00 0.00 2.52
703 993 6.086011 AGGAGAGAGGAGAAATACAGAGAA 57.914 41.667 0.00 0.00 0.00 2.87
704 994 5.725551 AGGAGAGAGGAGAAATACAGAGA 57.274 43.478 0.00 0.00 0.00 3.10
705 995 6.183360 GGAAAGGAGAGAGGAGAAATACAGAG 60.183 46.154 0.00 0.00 0.00 3.35
706 996 5.659079 GGAAAGGAGAGAGGAGAAATACAGA 59.341 44.000 0.00 0.00 0.00 3.41
707 997 5.660864 AGGAAAGGAGAGAGGAGAAATACAG 59.339 44.000 0.00 0.00 0.00 2.74
708 998 5.594777 AGGAAAGGAGAGAGGAGAAATACA 58.405 41.667 0.00 0.00 0.00 2.29
709 999 6.553953 AAGGAAAGGAGAGAGGAGAAATAC 57.446 41.667 0.00 0.00 0.00 1.89
710 1000 7.511028 GGATAAGGAAAGGAGAGAGGAGAAATA 59.489 40.741 0.00 0.00 0.00 1.40
711 1001 6.328934 GGATAAGGAAAGGAGAGAGGAGAAAT 59.671 42.308 0.00 0.00 0.00 2.17
712 1002 5.663556 GGATAAGGAAAGGAGAGAGGAGAAA 59.336 44.000 0.00 0.00 0.00 2.52
713 1003 5.042979 AGGATAAGGAAAGGAGAGAGGAGAA 60.043 44.000 0.00 0.00 0.00 2.87
714 1004 4.484270 AGGATAAGGAAAGGAGAGAGGAGA 59.516 45.833 0.00 0.00 0.00 3.71
715 1005 4.814967 AGGATAAGGAAAGGAGAGAGGAG 58.185 47.826 0.00 0.00 0.00 3.69
716 1006 4.909355 AGGATAAGGAAAGGAGAGAGGA 57.091 45.455 0.00 0.00 0.00 3.71
717 1007 4.346709 GGAAGGATAAGGAAAGGAGAGAGG 59.653 50.000 0.00 0.00 0.00 3.69
718 1008 4.038642 CGGAAGGATAAGGAAAGGAGAGAG 59.961 50.000 0.00 0.00 0.00 3.20
719 1009 3.961408 CGGAAGGATAAGGAAAGGAGAGA 59.039 47.826 0.00 0.00 0.00 3.10
720 1010 3.493524 GCGGAAGGATAAGGAAAGGAGAG 60.494 52.174 0.00 0.00 0.00 3.20
721 1011 2.434702 GCGGAAGGATAAGGAAAGGAGA 59.565 50.000 0.00 0.00 0.00 3.71
722 1012 2.485657 GGCGGAAGGATAAGGAAAGGAG 60.486 54.545 0.00 0.00 0.00 3.69
723 1013 1.489230 GGCGGAAGGATAAGGAAAGGA 59.511 52.381 0.00 0.00 0.00 3.36
724 1014 1.211949 TGGCGGAAGGATAAGGAAAGG 59.788 52.381 0.00 0.00 0.00 3.11
725 1015 2.289565 GTGGCGGAAGGATAAGGAAAG 58.710 52.381 0.00 0.00 0.00 2.62
726 1016 1.064979 GGTGGCGGAAGGATAAGGAAA 60.065 52.381 0.00 0.00 0.00 3.13
727 1017 0.544697 GGTGGCGGAAGGATAAGGAA 59.455 55.000 0.00 0.00 0.00 3.36
728 1018 0.619255 TGGTGGCGGAAGGATAAGGA 60.619 55.000 0.00 0.00 0.00 3.36
729 1019 0.254747 TTGGTGGCGGAAGGATAAGG 59.745 55.000 0.00 0.00 0.00 2.69
730 1020 1.379527 GTTGGTGGCGGAAGGATAAG 58.620 55.000 0.00 0.00 0.00 1.73
731 1021 0.034863 GGTTGGTGGCGGAAGGATAA 60.035 55.000 0.00 0.00 0.00 1.75
732 1022 1.202099 TGGTTGGTGGCGGAAGGATA 61.202 55.000 0.00 0.00 0.00 2.59
733 1023 2.355115 GGTTGGTGGCGGAAGGAT 59.645 61.111 0.00 0.00 0.00 3.24
734 1024 3.172106 TGGTTGGTGGCGGAAGGA 61.172 61.111 0.00 0.00 0.00 3.36
735 1025 2.983592 GTGGTTGGTGGCGGAAGG 60.984 66.667 0.00 0.00 0.00 3.46
736 1026 2.983592 GGTGGTTGGTGGCGGAAG 60.984 66.667 0.00 0.00 0.00 3.46
737 1027 4.589675 GGGTGGTTGGTGGCGGAA 62.590 66.667 0.00 0.00 0.00 4.30
742 1032 4.198224 ACGGTGGGTGGTTGGTGG 62.198 66.667 0.00 0.00 0.00 4.61
743 1033 2.593436 GACGGTGGGTGGTTGGTG 60.593 66.667 0.00 0.00 0.00 4.17
744 1034 4.244463 CGACGGTGGGTGGTTGGT 62.244 66.667 0.00 0.00 0.00 3.67
745 1035 4.244463 ACGACGGTGGGTGGTTGG 62.244 66.667 0.00 0.00 33.35 3.77
746 1036 2.970324 CACGACGGTGGGTGGTTG 60.970 66.667 0.00 0.00 40.58 3.77
754 1044 4.742201 CCTGAGGCCACGACGGTG 62.742 72.222 5.01 0.00 43.99 4.94
765 1055 2.837291 CGAGGAGGAGGCCTGAGG 60.837 72.222 12.00 0.00 38.73 3.86
766 1056 3.535962 GCGAGGAGGAGGCCTGAG 61.536 72.222 12.00 0.00 38.73 3.35
805 1095 3.151022 GAGAGGAGGCCGTGGAGG 61.151 72.222 0.00 0.00 44.97 4.30
806 1096 3.522731 CGAGAGGAGGCCGTGGAG 61.523 72.222 0.00 0.00 0.00 3.86
815 1105 4.150454 AGGGGAGGGCGAGAGGAG 62.150 72.222 0.00 0.00 0.00 3.69
816 1106 4.144727 GAGGGGAGGGCGAGAGGA 62.145 72.222 0.00 0.00 0.00 3.71
817 1107 4.465446 TGAGGGGAGGGCGAGAGG 62.465 72.222 0.00 0.00 0.00 3.69
818 1108 3.151022 GTGAGGGGAGGGCGAGAG 61.151 72.222 0.00 0.00 0.00 3.20
819 1109 4.779733 GGTGAGGGGAGGGCGAGA 62.780 72.222 0.00 0.00 0.00 4.04
865 1155 3.207669 CGCAGCAGGGAAGGCATC 61.208 66.667 0.00 0.00 0.00 3.91
866 1156 4.809496 CCGCAGCAGGGAAGGCAT 62.809 66.667 0.00 0.00 0.00 4.40
870 1160 3.746949 CTAGGCCGCAGCAGGGAAG 62.747 68.421 0.00 0.00 42.56 3.46
871 1161 3.785859 CTAGGCCGCAGCAGGGAA 61.786 66.667 0.00 0.00 42.56 3.97
873 1163 4.845580 CACTAGGCCGCAGCAGGG 62.846 72.222 7.27 0.00 42.56 4.45
874 1164 4.087892 ACACTAGGCCGCAGCAGG 62.088 66.667 7.27 0.00 42.56 4.85
875 1165 2.816958 CACACTAGGCCGCAGCAG 60.817 66.667 7.27 3.68 42.56 4.24
876 1166 3.177194 AACACACTAGGCCGCAGCA 62.177 57.895 7.27 0.00 42.56 4.41
877 1167 2.358737 AACACACTAGGCCGCAGC 60.359 61.111 7.27 0.00 38.76 5.25
878 1168 2.680913 GCAACACACTAGGCCGCAG 61.681 63.158 0.00 0.57 0.00 5.18
879 1169 2.668212 GCAACACACTAGGCCGCA 60.668 61.111 0.00 0.00 0.00 5.69
880 1170 3.788766 CGCAACACACTAGGCCGC 61.789 66.667 0.00 0.00 0.00 6.53
881 1171 3.118454 CCGCAACACACTAGGCCG 61.118 66.667 0.00 0.00 0.00 6.13
882 1172 3.431725 GCCGCAACACACTAGGCC 61.432 66.667 0.00 0.00 41.81 5.19
883 1173 3.788766 CGCCGCAACACACTAGGC 61.789 66.667 0.00 0.00 44.00 3.93
884 1174 2.357034 ACGCCGCAACACACTAGG 60.357 61.111 0.00 0.00 0.00 3.02
885 1175 2.716828 CGACGCCGCAACACACTAG 61.717 63.158 0.00 0.00 0.00 2.57
886 1176 2.731721 CGACGCCGCAACACACTA 60.732 61.111 0.00 0.00 0.00 2.74
933 1223 4.729918 AGCAGGAAAGGCGGCCAG 62.730 66.667 23.09 4.60 36.08 4.85
934 1224 4.722700 GAGCAGGAAAGGCGGCCA 62.723 66.667 23.09 0.00 36.08 5.36
937 1227 2.815647 GACGAGCAGGAAAGGCGG 60.816 66.667 0.00 0.00 36.08 6.13
938 1228 2.815647 GGACGAGCAGGAAAGGCG 60.816 66.667 0.00 0.00 36.08 5.52
939 1229 2.815647 CGGACGAGCAGGAAAGGC 60.816 66.667 0.00 0.00 0.00 4.35
940 1230 2.815647 GCGGACGAGCAGGAAAGG 60.816 66.667 0.00 0.00 37.05 3.11
941 1231 2.815647 GGCGGACGAGCAGGAAAG 60.816 66.667 0.00 0.00 39.27 2.62
942 1232 4.388499 GGGCGGACGAGCAGGAAA 62.388 66.667 0.00 0.00 39.27 3.13
969 1259 3.047877 GGGTTCAACGGCGGTGAG 61.048 66.667 27.80 0.87 0.00 3.51
970 1260 4.973055 CGGGTTCAACGGCGGTGA 62.973 66.667 25.81 25.81 0.00 4.02
991 1281 4.147322 GTTGTCCATGGCGACGCG 62.147 66.667 14.61 3.53 35.40 6.01
992 1282 3.047280 TGTTGTCCATGGCGACGC 61.047 61.111 12.43 12.43 35.40 5.19
993 1283 2.677003 GGTGTTGTCCATGGCGACG 61.677 63.158 6.96 0.00 35.40 5.12
994 1284 2.677003 CGGTGTTGTCCATGGCGAC 61.677 63.158 6.96 12.70 0.00 5.19
995 1285 2.358125 CGGTGTTGTCCATGGCGA 60.358 61.111 6.96 0.00 0.00 5.54
996 1286 4.101790 GCGGTGTTGTCCATGGCG 62.102 66.667 6.96 3.89 0.00 5.69
997 1287 3.747976 GGCGGTGTTGTCCATGGC 61.748 66.667 6.96 2.72 0.00 4.40
998 1288 3.430862 CGGCGGTGTTGTCCATGG 61.431 66.667 4.97 4.97 0.00 3.66
999 1289 2.668212 ACGGCGGTGTTGTCCATG 60.668 61.111 13.24 0.00 0.00 3.66
1000 1290 2.358247 GACGGCGGTGTTGTCCAT 60.358 61.111 13.24 0.00 0.00 3.41
1001 1291 4.953868 CGACGGCGGTGTTGTCCA 62.954 66.667 13.24 0.00 0.00 4.02
1013 1303 4.554363 CCGAGTAGCTGGCGACGG 62.554 72.222 0.00 0.00 40.79 4.79
1014 1304 3.736482 GACCGAGTAGCTGGCGACG 62.736 68.421 0.00 0.00 0.00 5.12
1015 1305 2.102553 GACCGAGTAGCTGGCGAC 59.897 66.667 0.00 0.00 0.00 5.19
1016 1306 3.138798 GGACCGAGTAGCTGGCGA 61.139 66.667 0.00 0.00 0.00 5.54
1017 1307 4.208686 GGGACCGAGTAGCTGGCG 62.209 72.222 0.00 0.00 0.00 5.69
1018 1308 3.851128 GGGGACCGAGTAGCTGGC 61.851 72.222 0.00 0.00 40.86 4.85
1035 1325 3.316573 GACGACCTGGCTTCCCCTG 62.317 68.421 0.00 0.00 0.00 4.45
1036 1326 3.003763 GACGACCTGGCTTCCCCT 61.004 66.667 0.00 0.00 0.00 4.79
1037 1327 4.097361 GGACGACCTGGCTTCCCC 62.097 72.222 0.00 0.00 0.00 4.81
1038 1328 3.003763 AGGACGACCTGGCTTCCC 61.004 66.667 5.39 0.26 45.92 3.97
1220 1510 4.760047 CGGTGAAGAGGGTGCCCG 62.760 72.222 0.98 0.00 41.95 6.13
1320 1610 2.777972 CCGCGTCGAATCCCAGGTA 61.778 63.158 4.92 0.00 0.00 3.08
1347 1637 1.153469 GGCCTCGCTCTCAAAGGAG 60.153 63.158 0.00 0.00 42.80 3.69
1348 1638 2.982130 GGCCTCGCTCTCAAAGGA 59.018 61.111 0.00 0.00 31.44 3.36
1349 1639 2.510238 CGGCCTCGCTCTCAAAGG 60.510 66.667 0.00 0.00 0.00 3.11
1350 1640 1.807573 GTCGGCCTCGCTCTCAAAG 60.808 63.158 0.00 0.00 36.13 2.77
1351 1641 2.261671 GTCGGCCTCGCTCTCAAA 59.738 61.111 0.00 0.00 36.13 2.69
1352 1642 4.116328 CGTCGGCCTCGCTCTCAA 62.116 66.667 0.00 0.00 36.13 3.02
1354 1644 4.244802 CTCGTCGGCCTCGCTCTC 62.245 72.222 0.00 0.00 36.13 3.20
1365 1655 4.421479 AGCTTCACCGGCTCGTCG 62.421 66.667 0.00 0.00 34.70 5.12
1366 1656 2.507324 GAGCTTCACCGGCTCGTC 60.507 66.667 0.00 0.00 45.01 4.20
1370 1660 2.177594 CTCAAGGAGCTTCACCGGCT 62.178 60.000 0.00 0.00 43.26 5.52
1371 1661 1.743252 CTCAAGGAGCTTCACCGGC 60.743 63.158 0.00 0.00 0.00 6.13
1372 1662 0.108424 CTCTCAAGGAGCTTCACCGG 60.108 60.000 0.00 0.00 35.08 5.28
1373 1663 3.432517 CTCTCAAGGAGCTTCACCG 57.567 57.895 0.00 0.00 35.08 4.94
1458 1748 3.866582 CTCCACATCCTCCCGGGC 61.867 72.222 18.49 0.00 34.39 6.13
1582 1872 1.731613 CCGTCTTCGTTGTGCGCTA 60.732 57.895 9.73 0.00 41.07 4.26
1610 1900 1.681327 TTTCCGTCCTCCTCCTCCG 60.681 63.158 0.00 0.00 0.00 4.63
1616 1906 4.065281 CGCCGTTTCCGTCCTCCT 62.065 66.667 0.00 0.00 0.00 3.69
1680 1971 2.262915 CGGCCTCAAGAAGAGCGT 59.737 61.111 0.00 0.00 43.31 5.07
1681 1972 2.510238 CCGGCCTCAAGAAGAGCG 60.510 66.667 0.00 0.00 43.31 5.03
1682 1973 2.124942 CCCGGCCTCAAGAAGAGC 60.125 66.667 0.00 0.00 43.31 4.09
1683 1974 2.124942 GCCCGGCCTCAAGAAGAG 60.125 66.667 0.00 0.00 44.31 2.85
1684 1975 3.717294 GGCCCGGCCTCAAGAAGA 61.717 66.667 22.31 0.00 46.69 2.87
1729 2034 1.040339 AAAAGTTTCCAGCCGTGCCA 61.040 50.000 0.00 0.00 0.00 4.92
1750 2072 1.003118 GGAATTTTTGGCTTGGGGGTC 59.997 52.381 0.00 0.00 0.00 4.46
1767 2089 3.164977 TGGGGACTGCACGTGGAA 61.165 61.111 18.88 0.00 0.00 3.53
1768 2090 3.625897 CTGGGGACTGCACGTGGA 61.626 66.667 18.88 14.63 0.00 4.02
1769 2091 4.704833 CCTGGGGACTGCACGTGG 62.705 72.222 18.88 3.72 0.00 4.94
1808 2133 4.785453 CTCCAGCCGTTGAGCCCC 62.785 72.222 0.00 0.00 0.00 5.80
1881 2206 2.376808 ACATCGAGCAACCTTCAGAG 57.623 50.000 0.00 0.00 0.00 3.35
1974 4028 7.872163 TCGAAAACAATACTCTTAGCGTAAA 57.128 32.000 0.00 0.00 0.00 2.01
2024 4078 7.756558 AGCTACTTCAAGACAATAAGCAAATC 58.243 34.615 0.00 0.00 0.00 2.17
2030 4086 8.948631 TTGGATAGCTACTTCAAGACAATAAG 57.051 34.615 0.00 0.00 0.00 1.73
2058 4120 5.760253 TGATTCTGTCAGTCAAGAAAAGGAC 59.240 40.000 0.00 0.00 31.80 3.85
2109 4171 5.047092 TGTCACTCAAGAATGCAGAGATGTA 60.047 40.000 6.89 0.00 33.69 2.29
2160 4226 5.513376 TCATTGTGCAGAAATCATATTCGC 58.487 37.500 0.00 0.00 34.46 4.70
2161 4227 8.476925 CAATTCATTGTGCAGAAATCATATTCG 58.523 33.333 0.00 0.00 32.61 3.34
2174 4240 8.883954 TTTTTGTAATCTCAATTCATTGTGCA 57.116 26.923 0.00 0.00 38.84 4.57
2254 4320 6.259608 CCATGCTTCAAATTTACACCAAAACA 59.740 34.615 0.00 0.00 0.00 2.83
2255 4321 6.657888 CCATGCTTCAAATTTACACCAAAAC 58.342 36.000 0.00 0.00 0.00 2.43
2355 4426 3.755378 GTCTGGACCACTAGAGTAAACGA 59.245 47.826 0.00 0.00 34.44 3.85
2365 4436 1.353358 TCGGAGAAGTCTGGACCACTA 59.647 52.381 0.00 0.00 0.00 2.74
2373 4444 4.916983 ATGAGAAGATCGGAGAAGTCTG 57.083 45.455 0.00 0.00 43.58 3.51
2380 4451 7.094420 TGCTATTCTAGAATGAGAAGATCGGAG 60.094 40.741 25.22 12.27 38.80 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.