Multiple sequence alignment - TraesCS3B01G574800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G574800 chr3B 100.000 5671 0 0 2392 8062 805095312 805100982 0.000000e+00 10473.0
1 TraesCS3B01G574800 chr3B 100.000 2204 0 0 1 2204 805092921 805095124 0.000000e+00 4071.0
2 TraesCS3B01G574800 chr3B 88.288 1998 178 26 2395 4369 805122775 805124739 0.000000e+00 2342.0
3 TraesCS3B01G574800 chr3B 89.525 1833 165 15 5316 7127 805126766 805128592 0.000000e+00 2296.0
4 TraesCS3B01G574800 chr3B 94.034 1123 48 9 589 1693 805117768 805118889 0.000000e+00 1685.0
5 TraesCS3B01G574800 chr3B 94.034 1123 48 9 589 1693 805121032 805122153 0.000000e+00 1685.0
6 TraesCS3B01G574800 chr3B 82.255 958 111 25 4361 5287 805125840 805126769 0.000000e+00 774.0
7 TraesCS3B01G574800 chr3B 90.678 354 31 2 7609 7961 805129720 805130072 3.410000e-128 470.0
8 TraesCS3B01G574800 chr3B 77.489 462 92 11 5031 5487 10755222 10754768 4.800000e-67 267.0
9 TraesCS3B01G574800 chr3B 90.955 199 15 2 7260 7456 805128829 805129026 1.730000e-66 265.0
10 TraesCS3B01G574800 chr3B 94.375 160 7 2 7447 7605 805129183 805129341 2.250000e-60 244.0
11 TraesCS3B01G574800 chr3B 95.455 110 5 0 7953 8062 805131451 805131560 8.320000e-40 176.0
12 TraesCS3B01G574800 chr3B 100.000 48 0 0 378 425 805115387 805115434 1.110000e-13 89.8
13 TraesCS3B01G574800 chr3A 89.215 4775 383 53 2395 7105 728096344 728101050 0.000000e+00 5843.0
14 TraesCS3B01G574800 chr3A 88.326 3615 320 46 4164 7721 728236544 728240113 0.000000e+00 4244.0
15 TraesCS3B01G574800 chr3A 91.211 1809 110 22 2395 4172 728226873 728228663 0.000000e+00 2414.0
16 TraesCS3B01G574800 chr3A 91.568 1767 102 18 380 2106 728094339 728096098 0.000000e+00 2394.0
17 TraesCS3B01G574800 chr3A 91.587 1676 93 22 469 2106 728224504 728226169 0.000000e+00 2270.0
18 TraesCS3B01G574800 chr3A 85.297 993 143 3 6071 7063 728321884 728322873 0.000000e+00 1022.0
19 TraesCS3B01G574800 chr3A 80.563 1173 166 39 4521 5667 327291421 327292557 0.000000e+00 846.0
20 TraesCS3B01G574800 chr3A 88.593 526 52 6 7210 7728 728101159 728101683 4.110000e-177 632.0
21 TraesCS3B01G574800 chr3A 84.495 574 74 8 949 1511 728320708 728321277 3.290000e-153 553.0
22 TraesCS3B01G574800 chr3A 84.675 385 35 12 1 367 728075077 728075455 5.950000e-96 363.0
23 TraesCS3B01G574800 chr3A 84.595 383 35 13 1 363 728222995 728223373 7.690000e-95 359.0
24 TraesCS3B01G574800 chr3A 78.326 466 89 11 5032 5493 696208541 696208084 2.850000e-74 291.0
25 TraesCS3B01G574800 chr3A 81.414 382 47 10 1 363 728092852 728093228 2.850000e-74 291.0
26 TraesCS3B01G574800 chr3A 77.657 461 95 7 5031 5487 66796438 66796894 2.870000e-69 274.0
27 TraesCS3B01G574800 chr3A 84.831 178 17 5 559 734 728085536 728085705 3.870000e-38 171.0
28 TraesCS3B01G574800 chr3D 89.836 2371 192 29 5382 7721 598079132 598081484 0.000000e+00 2998.0
29 TraesCS3B01G574800 chr3D 89.388 1715 110 27 391 2047 598072125 598073825 0.000000e+00 2093.0
30 TraesCS3B01G574800 chr3D 89.493 1656 128 23 3329 4951 598075837 598077479 0.000000e+00 2052.0
31 TraesCS3B01G574800 chr3D 92.233 927 50 13 2395 3305 598074924 598075844 0.000000e+00 1293.0
32 TraesCS3B01G574800 chr3D 84.707 1007 151 3 6071 7077 598162054 598163057 0.000000e+00 1003.0
33 TraesCS3B01G574800 chr3D 85.201 946 137 3 6119 7063 597917147 597916204 0.000000e+00 968.0
34 TraesCS3B01G574800 chr3D 83.662 912 144 5 6154 7063 598041833 598042741 0.000000e+00 854.0
35 TraesCS3B01G574800 chr3D 83.993 581 81 7 938 1511 598160955 598161530 1.530000e-151 547.0
36 TraesCS3B01G574800 chr3D 86.600 403 35 13 1 386 598070533 598070933 2.080000e-115 427.0
37 TraesCS3B01G574800 chr3D 90.357 280 25 2 1 280 598064635 598064912 4.600000e-97 366.0
38 TraesCS3B01G574800 chr3D 89.796 98 7 3 2109 2204 598074363 598074459 1.100000e-23 122.0
39 TraesCS3B01G574800 chrUn 89.563 1830 164 15 5319 7127 291745893 291744070 0.000000e+00 2296.0
40 TraesCS3B01G574800 chrUn 90.678 354 31 2 7609 7961 291742942 291742590 3.410000e-128 470.0
41 TraesCS3B01G574800 chrUn 85.553 443 44 8 1 425 341993919 341993479 5.740000e-121 446.0
42 TraesCS3B01G574800 chrUn 85.135 444 45 9 1 425 341958974 341958533 1.240000e-117 435.0
43 TraesCS3B01G574800 chrUn 90.955 199 15 2 7260 7456 291743833 291743636 1.730000e-66 265.0
44 TraesCS3B01G574800 chrUn 94.375 160 7 2 7447 7605 291743479 291743321 2.250000e-60 244.0
45 TraesCS3B01G574800 chrUn 95.455 110 5 0 7953 8062 291741211 291741102 8.320000e-40 176.0
46 TraesCS3B01G574800 chr2A 83.046 755 104 10 4514 5256 447928348 447929090 0.000000e+00 664.0
47 TraesCS3B01G574800 chr2A 78.017 464 86 14 5031 5487 3274888 3275342 2.220000e-70 278.0
48 TraesCS3B01G574800 chr5B 83.664 655 77 14 4580 5214 584869459 584868815 2.510000e-164 590.0
49 TraesCS3B01G574800 chr5B 89.623 106 9 2 7127 7232 429884508 429884405 5.080000e-27 134.0
50 TraesCS3B01G574800 chr7B 77.521 952 170 31 4514 5431 138035237 138034296 4.280000e-147 532.0
51 TraesCS3B01G574800 chr2D 80.355 733 110 18 4544 5255 337847002 337847721 7.170000e-145 525.0
52 TraesCS3B01G574800 chr2D 78.224 473 88 13 5029 5494 329156685 329156221 1.020000e-73 289.0
53 TraesCS3B01G574800 chr2D 78.186 463 88 11 5031 5487 122054190 122053735 4.760000e-72 283.0
54 TraesCS3B01G574800 chr2D 77.586 464 88 14 5031 5487 334078800 334079254 4.800000e-67 267.0
55 TraesCS3B01G574800 chr5D 85.504 476 57 6 4521 4987 438822498 438822026 3.380000e-133 486.0
56 TraesCS3B01G574800 chr5D 92.105 38 3 0 1943 1980 482409531 482409494 4.000000e-03 54.7
57 TraesCS3B01G574800 chr2B 76.231 589 112 21 4918 5488 474350096 474349518 3.680000e-73 287.0
58 TraesCS3B01G574800 chr6A 78.017 464 86 14 5031 5487 17909916 17909462 2.220000e-70 278.0
59 TraesCS3B01G574800 chr6A 92.632 95 6 1 7127 7221 542057079 542057172 1.410000e-27 135.0
60 TraesCS3B01G574800 chr6A 100.000 28 0 0 1945 1972 520842812 520842785 1.500000e-02 52.8
61 TraesCS3B01G574800 chr7D 94.565 92 5 0 7125 7216 52468667 52468758 8.430000e-30 143.0
62 TraesCS3B01G574800 chr7D 95.455 88 4 0 7127 7214 174803233 174803146 3.030000e-29 141.0
63 TraesCS3B01G574800 chr7D 88.182 110 9 4 7127 7234 123332185 123332078 2.360000e-25 128.0
64 TraesCS3B01G574800 chr7D 84.906 106 16 0 1043 1148 579570471 579570576 3.080000e-19 108.0
65 TraesCS3B01G574800 chr4A 92.708 96 5 2 7127 7222 14117964 14118057 3.920000e-28 137.0
66 TraesCS3B01G574800 chr4A 83.803 142 23 0 1043 1184 554853377 554853518 1.410000e-27 135.0
67 TraesCS3B01G574800 chr4A 90.196 102 9 1 7127 7228 113861385 113861285 1.830000e-26 132.0
68 TraesCS3B01G574800 chr4B 86.290 124 17 0 1061 1184 64775097 64774974 1.410000e-27 135.0
69 TraesCS3B01G574800 chr4B 100.000 28 0 0 1945 1972 12493190 12493217 1.500000e-02 52.8
70 TraesCS3B01G574800 chr4D 83.448 145 23 1 1038 1182 44756596 44756453 5.080000e-27 134.0
71 TraesCS3B01G574800 chr5A 89.423 104 10 1 7127 7230 632877190 632877088 6.570000e-26 130.0
72 TraesCS3B01G574800 chr1D 87.500 112 13 1 7127 7237 349423009 349422898 2.360000e-25 128.0
73 TraesCS3B01G574800 chr7A 81.560 141 19 5 1049 1182 671305699 671305839 8.550000e-20 110.0
74 TraesCS3B01G574800 chr7A 100.000 29 0 0 1943 1971 17398918 17398890 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G574800 chr3B 805092921 805100982 8061 False 7272.00 10473 100.000000 1 8062 2 chr3B.!!$F1 8061
1 TraesCS3B01G574800 chr3B 805115387 805131560 16173 False 1002.68 2342 91.959900 378 8062 10 chr3B.!!$F2 7684
2 TraesCS3B01G574800 chr3A 728236544 728240113 3569 False 4244.00 4244 88.326000 4164 7721 1 chr3A.!!$F5 3557
3 TraesCS3B01G574800 chr3A 728092852 728101683 8831 False 2290.00 5843 87.697500 1 7728 4 chr3A.!!$F6 7727
4 TraesCS3B01G574800 chr3A 728222995 728228663 5668 False 1681.00 2414 89.131000 1 4172 3 chr3A.!!$F7 4171
5 TraesCS3B01G574800 chr3A 327291421 327292557 1136 False 846.00 846 80.563000 4521 5667 1 chr3A.!!$F2 1146
6 TraesCS3B01G574800 chr3A 728320708 728322873 2165 False 787.50 1022 84.896000 949 7063 2 chr3A.!!$F8 6114
7 TraesCS3B01G574800 chr3D 598070533 598081484 10951 False 1497.50 2998 89.557667 1 7721 6 chr3D.!!$F3 7720
8 TraesCS3B01G574800 chr3D 597916204 597917147 943 True 968.00 968 85.201000 6119 7063 1 chr3D.!!$R1 944
9 TraesCS3B01G574800 chr3D 598041833 598042741 908 False 854.00 854 83.662000 6154 7063 1 chr3D.!!$F1 909
10 TraesCS3B01G574800 chr3D 598160955 598163057 2102 False 775.00 1003 84.350000 938 7077 2 chr3D.!!$F4 6139
11 TraesCS3B01G574800 chrUn 291741102 291745893 4791 True 690.20 2296 92.205200 5319 8062 5 chrUn.!!$R3 2743
12 TraesCS3B01G574800 chr2A 447928348 447929090 742 False 664.00 664 83.046000 4514 5256 1 chr2A.!!$F2 742
13 TraesCS3B01G574800 chr5B 584868815 584869459 644 True 590.00 590 83.664000 4580 5214 1 chr5B.!!$R2 634
14 TraesCS3B01G574800 chr7B 138034296 138035237 941 True 532.00 532 77.521000 4514 5431 1 chr7B.!!$R1 917
15 TraesCS3B01G574800 chr2D 337847002 337847721 719 False 525.00 525 80.355000 4544 5255 1 chr2D.!!$F2 711
16 TraesCS3B01G574800 chr2B 474349518 474350096 578 True 287.00 287 76.231000 4918 5488 1 chr2B.!!$R1 570

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
86 87 0.328258 GGGCCATGTTCACCAGTAGT 59.672 55.000 4.39 0.0 0.00 2.73 F
946 4357 0.667993 AAACCAACAGCACACGGATG 59.332 50.000 0.00 0.0 39.32 3.51 F
1476 4899 0.251916 CTTACATGGCCTTCCCGACA 59.748 55.000 3.32 0.0 35.87 4.35 F
1546 4987 0.378257 CTACATCAACCATGCACGGC 59.622 55.000 0.00 0.0 35.65 5.68 F
3535 10771 1.006998 TGTTCCCATTAAGCTGCCCAT 59.993 47.619 0.00 0.0 0.00 4.00 F
4888 13298 0.109342 CCAGATAGCACCACCATCCC 59.891 60.000 0.00 0.0 0.00 3.85 F
4967 13377 0.179250 CCGTTGTTGTCATCGCTTCG 60.179 55.000 0.00 0.0 36.02 3.79 F
5009 13420 0.460311 GTACTCGTCCATGGTCCCTG 59.540 60.000 12.58 2.5 0.00 4.45 F
5024 13435 1.207791 CCCTGTAGCTGATGAACCCT 58.792 55.000 0.00 0.0 0.00 4.34 F
6644 16391 1.228367 GATAGGCCTACCCGACGGA 60.228 63.158 16.61 0.0 39.21 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1138 4561 0.320374 TTGAACGCGGAGTGGAAGAT 59.680 50.000 12.47 0.0 45.78 2.40 R
2399 9488 0.178995 TGCATGTTGACTCTGGCCAA 60.179 50.000 7.01 0.0 0.00 4.52 R
3266 10479 0.466543 AAGTGTACAGTTGTGGCCGA 59.533 50.000 15.17 0.0 0.00 5.54 R
3539 10775 1.948104 TGGTGACGCATATAGGTTGC 58.052 50.000 0.00 0.0 36.74 4.17 R
5014 13425 0.033208 GGGCATGGAAGGGTTCATCA 60.033 55.000 0.00 0.0 0.00 3.07 R
5847 15593 0.464452 CGGGAGGCACTAACCTTAGG 59.536 60.000 0.00 0.0 41.55 2.69 R
6644 16391 1.065854 CCTCGCACCTCTTCCTCAAAT 60.066 52.381 0.00 0.0 0.00 2.32 R
6659 16406 1.146263 CACCATTCCCCTACCTCGC 59.854 63.158 0.00 0.0 0.00 5.03 R
6939 16686 1.172180 TTGTTTGCCCTTCGCCTCAG 61.172 55.000 0.00 0.0 36.24 3.35 R
7909 18338 0.109412 GGTAGGTGACCTTCGTGTCG 60.109 60.000 10.53 0.0 45.89 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 87 0.328258 GGGCCATGTTCACCAGTAGT 59.672 55.000 4.39 0.00 0.00 2.73
157 158 3.916776 GCAAAAATCAAAGAGAAGAGGCG 59.083 43.478 0.00 0.00 0.00 5.52
182 184 1.788518 TTGGCTGTAGTGGCATGGGT 61.789 55.000 0.00 0.00 42.07 4.51
202 204 0.679321 TGCGCAAATCCTACATGGCA 60.679 50.000 8.16 0.00 35.26 4.92
208 210 3.018856 CAAATCCTACATGGCAGAGCAA 58.981 45.455 0.00 0.00 35.26 3.91
249 251 1.517257 GTGTCGATCACAGAGGCCG 60.517 63.158 11.62 0.00 45.51 6.13
271 273 1.823899 GGGGGAACGCAAGCATAGG 60.824 63.158 0.00 0.00 45.96 2.57
373 392 3.792047 CATGGCCAGTCACGTGCG 61.792 66.667 13.05 1.27 0.00 5.34
428 1663 3.760035 CAGAGCAGGGCGTACGGT 61.760 66.667 18.39 0.00 0.00 4.83
452 1687 0.698238 TTGGCTGTAAGTGGCAGGAT 59.302 50.000 0.00 0.00 40.95 3.24
455 1690 0.811616 GCTGTAAGTGGCAGGATCCG 60.812 60.000 5.98 2.47 35.30 4.18
649 4054 2.777692 GACCTCTTGGATGGGTGGATTA 59.222 50.000 0.00 0.00 37.04 1.75
686 4092 2.735134 GTTGGTAAGCTGTCGGTTAGTG 59.265 50.000 0.00 0.00 34.10 2.74
687 4093 1.965643 TGGTAAGCTGTCGGTTAGTGT 59.034 47.619 0.00 0.00 34.10 3.55
688 4094 3.156293 TGGTAAGCTGTCGGTTAGTGTA 58.844 45.455 0.00 0.00 34.10 2.90
689 4095 3.192001 TGGTAAGCTGTCGGTTAGTGTAG 59.808 47.826 0.00 0.00 34.10 2.74
690 4096 3.192212 GGTAAGCTGTCGGTTAGTGTAGT 59.808 47.826 0.00 0.00 34.10 2.73
842 4253 1.693606 CCTCAAGCAAACCCCACATTT 59.306 47.619 0.00 0.00 0.00 2.32
946 4357 0.667993 AAACCAACAGCACACGGATG 59.332 50.000 0.00 0.00 39.32 3.51
1305 4728 2.432628 CGTCTCGAGGCGCCTTTT 60.433 61.111 33.34 8.90 0.00 2.27
1332 4755 2.262915 CTCCGCGAGTTGCTCCTT 59.737 61.111 8.23 0.00 43.27 3.36
1350 4773 4.851214 GAGGAGGAGGGAGCGCCT 62.851 72.222 2.29 0.00 37.18 5.52
1474 4897 1.223487 GCTTACATGGCCTTCCCGA 59.777 57.895 3.32 0.00 35.87 5.14
1476 4899 0.251916 CTTACATGGCCTTCCCGACA 59.748 55.000 3.32 0.00 35.87 4.35
1482 4905 2.584391 GGCCTTCCCGACACTCTGT 61.584 63.158 0.00 0.00 0.00 3.41
1518 4941 1.343465 CCGCCACAAGGTACCTATAGG 59.657 57.143 16.67 17.73 38.11 2.57
1520 4943 2.047830 GCCACAAGGTACCTATAGGCT 58.952 52.381 29.98 9.44 36.41 4.58
1521 4944 3.236896 GCCACAAGGTACCTATAGGCTA 58.763 50.000 29.98 7.73 36.41 3.93
1522 4945 3.838903 GCCACAAGGTACCTATAGGCTAT 59.161 47.826 29.98 12.41 36.41 2.97
1523 4946 5.021458 GCCACAAGGTACCTATAGGCTATA 58.979 45.833 29.98 13.39 36.41 1.31
1524 4947 5.127356 GCCACAAGGTACCTATAGGCTATAG 59.873 48.000 29.98 27.50 36.41 1.31
1527 4950 6.377712 CACAAGGTACCTATAGGCTATAGTCC 59.622 46.154 30.20 26.91 37.11 3.85
1528 4951 6.277522 ACAAGGTACCTATAGGCTATAGTCCT 59.722 42.308 30.20 28.10 37.11 3.85
1529 4952 7.463618 ACAAGGTACCTATAGGCTATAGTCCTA 59.536 40.741 30.20 19.07 40.20 2.94
1531 4954 6.970640 AGGTACCTATAGGCTATAGTCCTACA 59.029 42.308 30.20 11.15 38.86 2.74
1546 4987 0.378257 CTACATCAACCATGCACGGC 59.622 55.000 0.00 0.00 35.65 5.68
1632 5073 5.163353 TGTCAGCCGGTGAATCATCTTTATA 60.163 40.000 1.90 0.00 36.74 0.98
1758 5341 4.561735 TTAGGCTTCCTTTTGTGTTTCG 57.438 40.909 0.00 0.00 34.61 3.46
1781 5364 6.485313 TCGTATGACAAGGACTTTGAAACAAT 59.515 34.615 4.05 0.00 39.21 2.71
1785 5368 7.815840 TGACAAGGACTTTGAAACAATATCA 57.184 32.000 4.05 0.00 39.21 2.15
1852 5435 9.321562 GAAATATGGTGAAAGAAAATGATGCAT 57.678 29.630 0.00 0.00 0.00 3.96
1952 5537 3.682696 CCAAGTTTACCAAGTACTCCCC 58.317 50.000 0.00 0.00 0.00 4.81
1971 5556 4.755266 CCCCCGTCCCATAATATAAGAG 57.245 50.000 0.00 0.00 0.00 2.85
2004 5589 7.451877 ACATCCGATATGTGAACCTATAAGAGT 59.548 37.037 2.97 0.00 0.00 3.24
2005 5590 7.215719 TCCGATATGTGAACCTATAAGAGTG 57.784 40.000 0.00 0.00 0.00 3.51
2053 6067 2.808206 GGGCGGAGGGAGTACCATG 61.808 68.421 0.00 0.00 43.89 3.66
2093 6115 7.341030 TGATGACCATTGACACTCAATCTAAT 58.659 34.615 0.00 0.00 43.03 1.73
2151 6214 8.998377 GGAAAACAAGGTAACATGCATATTTTT 58.002 29.630 0.00 0.00 39.40 1.94
2154 6217 6.700352 ACAAGGTAACATGCATATTTTTGCT 58.300 32.000 0.00 0.00 39.40 3.91
2174 6237 6.389830 TGCTACAAATGAAAGCAAGAAGAA 57.610 33.333 11.04 0.00 42.96 2.52
2512 9606 4.793071 AGATGTGAGATCGATCGATTGTC 58.207 43.478 29.89 26.54 34.60 3.18
2594 9688 2.029739 TCTACGCAAAGAACATGGACGA 60.030 45.455 0.00 0.00 0.00 4.20
2644 9740 6.395426 TTTGGCTGGCTGAGATAAAATATG 57.605 37.500 2.00 0.00 0.00 1.78
2652 9748 8.102800 TGGCTGAGATAAAATATGTAGCAATG 57.897 34.615 0.00 0.00 0.00 2.82
2750 9847 1.138661 TGCGCATCATCACCTACATGA 59.861 47.619 5.66 0.00 34.74 3.07
2793 9890 2.695359 ACGTAATTGCAGTACCACCAG 58.305 47.619 0.00 0.00 0.00 4.00
2874 9973 9.675464 TTATATTTTGTTCTTCGTATGGTTCCT 57.325 29.630 0.00 0.00 0.00 3.36
2934 10033 8.579850 TTCTTTGATTGTAACTAGCCATTGAT 57.420 30.769 0.00 0.00 0.00 2.57
2951 10050 3.733443 TGATAAGCAGATAAGCAGCGA 57.267 42.857 0.00 0.00 36.85 4.93
3128 10339 3.937706 CCAGTGGATAAAGAGCAGACAAG 59.062 47.826 1.68 0.00 0.00 3.16
3146 10358 7.502339 CAGACAAGTTTCGTACAAGACATAAG 58.498 38.462 0.00 0.00 0.00 1.73
3350 10576 7.210873 ACGAAAATCTTAGAGATTATCGGCTT 58.789 34.615 3.80 0.00 43.67 4.35
3358 10584 8.516234 TCTTAGAGATTATCGGCTTAACAGATC 58.484 37.037 0.00 0.00 34.76 2.75
3374 10600 4.903638 CAGATCGCTGTCTTTCGTTTAA 57.096 40.909 0.00 0.00 37.37 1.52
3402 10628 4.444388 TCGTCGAATGTGATAGCTATTTGC 59.556 41.667 7.87 2.26 43.29 3.68
3458 10692 5.526115 CATCAGCACTGTCATTGAACTTTT 58.474 37.500 0.00 0.00 0.00 2.27
3470 10704 6.142320 GTCATTGAACTTTTTAAGCTGAACCG 59.858 38.462 0.00 0.00 0.00 4.44
3492 10727 3.496507 GTGACAAGAGAAAAGCAGAGGTC 59.503 47.826 0.00 0.00 0.00 3.85
3528 10764 2.972625 GGGCTTTTGTTCCCATTAAGC 58.027 47.619 0.00 0.00 42.18 3.09
3535 10771 1.006998 TGTTCCCATTAAGCTGCCCAT 59.993 47.619 0.00 0.00 0.00 4.00
3537 10773 2.887152 GTTCCCATTAAGCTGCCCATAG 59.113 50.000 0.00 0.00 0.00 2.23
3539 10775 2.373169 TCCCATTAAGCTGCCCATAGAG 59.627 50.000 0.00 0.00 0.00 2.43
3574 10810 4.384868 CGTCACCATTTTTCCTACCCCTAT 60.385 45.833 0.00 0.00 0.00 2.57
3636 10883 6.482524 ACACTTCTAGGATTTCTTTTACCCC 58.517 40.000 0.00 0.00 0.00 4.95
3656 10903 5.015817 ACCCCAGAGTACCCAAAATATTTCA 59.984 40.000 0.10 0.00 0.00 2.69
3809 11056 2.762554 CCCAACTGGACCCCACACA 61.763 63.158 0.00 0.00 37.39 3.72
3834 11081 1.009675 GCACCAAATCTATGCGGCG 60.010 57.895 0.51 0.51 0.00 6.46
3839 11086 2.210116 CCAAATCTATGCGGCGTTAGT 58.790 47.619 9.37 0.00 0.00 2.24
3942 11189 4.044308 TCAGCTAGGATACATTTTGGGGA 58.956 43.478 0.00 0.00 41.41 4.81
4058 11305 2.700722 GCCACTAAGCCTAGAAAGCT 57.299 50.000 0.00 0.00 44.19 3.74
4064 11311 3.711704 ACTAAGCCTAGAAAGCTATGGCA 59.288 43.478 3.10 0.00 40.49 4.92
4079 11326 4.083431 GCTATGGCAAGATCAATGCAGTAG 60.083 45.833 20.74 19.77 45.60 2.57
4083 11330 3.273434 GCAAGATCAATGCAGTAGTGGA 58.727 45.455 16.09 0.00 43.29 4.02
4089 11336 0.552848 AATGCAGTAGTGGATGGGGG 59.447 55.000 5.20 0.00 34.42 5.40
4091 11338 2.919043 CAGTAGTGGATGGGGGCC 59.081 66.667 0.00 0.00 0.00 5.80
4092 11339 2.368329 AGTAGTGGATGGGGGCCC 60.368 66.667 15.76 15.76 0.00 5.80
4227 11478 8.960591 ACAAATAGCTACAAGAAACAAGCATAT 58.039 29.630 0.00 0.00 37.44 1.78
4333 11585 3.860930 GAAGCAAGGCCCGGGAACA 62.861 63.158 29.31 0.00 0.00 3.18
4372 12734 3.905454 TGGCACATGGAGTCCACT 58.095 55.556 15.86 0.00 35.80 4.00
4394 12756 6.697019 CACTGTAACTGCATTTAAAAGCAACT 59.303 34.615 17.82 10.75 40.73 3.16
4415 12777 6.259550 ACTTCCAAAGCATTATCACAACTC 57.740 37.500 0.00 0.00 0.00 3.01
4420 12782 7.933396 TCCAAAGCATTATCACAACTCATATG 58.067 34.615 0.00 0.00 0.00 1.78
4437 12799 4.536090 TCATATGTTGGAGGACTCAAGGTT 59.464 41.667 1.90 0.00 0.00 3.50
4449 12811 4.160626 GGACTCAAGGTTAGAGCATACTGT 59.839 45.833 0.00 0.00 36.58 3.55
4481 12844 5.105063 GCATTAAGATGGAAGCAAGGAAAC 58.895 41.667 0.00 0.00 33.72 2.78
4508 12871 7.339953 CAAGTAAAAGCAGCTTCATGTTTTTC 58.660 34.615 8.48 0.00 41.04 2.29
4541 12905 0.546598 AAGAAGGATTACCCCTGGCG 59.453 55.000 0.00 0.00 36.49 5.69
4618 12989 7.851228 TGACAAAGTAGATACATGGATCAACT 58.149 34.615 20.23 2.01 0.00 3.16
4691 13062 2.438975 CCTGGCGCATCCACACAT 60.439 61.111 10.83 0.00 40.72 3.21
4757 13144 1.203100 ACCAACCGGTGTAGTAGACCT 60.203 52.381 8.52 0.00 46.79 3.85
4783 13170 4.450122 CACCGCATGCGCACACTC 62.450 66.667 34.00 0.40 38.40 3.51
4815 13202 2.892425 GCCATCTTCCGCTGTCCG 60.892 66.667 0.00 0.00 0.00 4.79
4863 13251 4.043200 GCCAAGTCCAACTGCCGC 62.043 66.667 0.00 0.00 0.00 6.53
4888 13298 0.109342 CCAGATAGCACCACCATCCC 59.891 60.000 0.00 0.00 0.00 3.85
4901 13311 2.027605 ATCCCGCGCACGTCTATG 59.972 61.111 8.75 0.00 37.70 2.23
4959 13369 1.098712 GCCAAGACCCGTTGTTGTCA 61.099 55.000 0.00 0.00 33.89 3.58
4964 13374 0.949105 GACCCGTTGTTGTCATCGCT 60.949 55.000 0.00 0.00 36.02 4.93
4967 13377 0.179250 CCGTTGTTGTCATCGCTTCG 60.179 55.000 0.00 0.00 36.02 3.79
5009 13420 0.460311 GTACTCGTCCATGGTCCCTG 59.540 60.000 12.58 2.50 0.00 4.45
5014 13425 1.330655 CGTCCATGGTCCCTGTAGCT 61.331 60.000 12.58 0.00 0.00 3.32
5024 13435 1.207791 CCCTGTAGCTGATGAACCCT 58.792 55.000 0.00 0.00 0.00 4.34
5057 13479 2.692709 TGGGGGAACAACACATGAAT 57.307 45.000 0.00 0.00 0.00 2.57
5078 13500 1.230635 CCGCCATCATCCGATTGACC 61.231 60.000 0.00 0.00 0.00 4.02
5116 13539 1.305381 AGGTAGCCGAAGAGGTGCT 60.305 57.895 0.00 0.00 43.70 4.40
5159 13582 2.027285 TCATGAAGGAAACGATGCCTGA 60.027 45.455 0.00 0.00 34.00 3.86
5181 13604 1.821061 CGTCACCTCCACCAGCTTCT 61.821 60.000 0.00 0.00 0.00 2.85
5304 13727 1.516386 CCCAGATTCGACGACCACG 60.516 63.158 0.00 0.00 45.75 4.94
5454 15178 1.357258 CTGCTCGTCACCATCACTGC 61.357 60.000 0.00 0.00 0.00 4.40
5488 15213 1.341383 GGAGCCAAACCACCAGATCAT 60.341 52.381 0.00 0.00 0.00 2.45
5526 15269 3.717294 AATCCACCGCGGGCTTCT 61.717 61.111 31.76 4.28 34.36 2.85
5546 15289 2.281761 AGTTTCACCTGCCGCCAG 60.282 61.111 0.00 0.00 38.85 4.85
5575 15318 4.741239 ACTGCCCTGGGATCCGGT 62.741 66.667 19.27 7.24 0.00 5.28
5590 15333 1.736645 CGGTTCGGACATTGTCGCT 60.737 57.895 10.56 0.00 32.65 4.93
5614 15357 4.162690 GACCACGCCTAGCCCCAG 62.163 72.222 0.00 0.00 0.00 4.45
5676 15419 4.758251 CCACTGGATGTCGCCGCA 62.758 66.667 0.00 0.00 0.00 5.69
5791 15534 3.429085 GTCAAATGCATGAGCTTTACCG 58.571 45.455 0.00 0.00 42.74 4.02
5793 15536 2.418368 AATGCATGAGCTTTACCGGA 57.582 45.000 9.46 0.00 42.74 5.14
5818 15561 2.583441 CCCCCGACTGCAACAGAGA 61.583 63.158 0.78 0.00 35.18 3.10
5827 15570 1.898472 CTGCAACAGAGAGGAAGGAGA 59.102 52.381 0.00 0.00 32.44 3.71
5833 15576 2.858768 ACAGAGAGGAAGGAGAGGAGAT 59.141 50.000 0.00 0.00 0.00 2.75
5841 15587 1.456705 GGAGAGGAGATGGAGCGGT 60.457 63.158 0.00 0.00 0.00 5.68
5864 15610 1.407025 GCACCTAAGGTTAGTGCCTCC 60.407 57.143 3.01 0.00 38.03 4.30
5868 15614 2.381911 CTAAGGTTAGTGCCTCCCGTA 58.618 52.381 0.00 0.00 38.03 4.02
5928 15674 3.056607 ACAATGGTTGTTGCCAATAGAGC 60.057 43.478 0.00 0.00 42.22 4.09
6065 15811 4.754322 ACCAAAACATCAACAAACACTCC 58.246 39.130 0.00 0.00 0.00 3.85
6088 15834 2.822764 AGAAACGGGACTCGCATATTC 58.177 47.619 0.00 0.00 43.89 1.75
6106 15853 8.175069 CGCATATTCAAGTTGCTTAGTTTCTTA 58.825 33.333 0.00 0.00 34.23 2.10
6281 16028 4.159135 ACGATGTCCACCTTAATAGAACGT 59.841 41.667 0.00 0.00 0.00 3.99
6623 16370 1.550976 GACTCGGTTCAGGATTCAGGT 59.449 52.381 0.00 0.00 0.00 4.00
6644 16391 1.228367 GATAGGCCTACCCGACGGA 60.228 63.158 16.61 0.00 39.21 4.69
6659 16406 2.622436 GACGGATTTGAGGAAGAGGTG 58.378 52.381 0.00 0.00 0.00 4.00
6923 16670 6.403092 GCAGTGTTAAAAAGTTGTTTTGCCAT 60.403 34.615 0.00 0.00 35.96 4.40
6939 16686 2.016096 GCCATGAAGAAGGTGGAGAGC 61.016 57.143 0.00 0.00 34.94 4.09
7049 16796 4.990426 GTGAATTGCATAATGGCATTACCC 59.010 41.667 21.43 15.11 44.48 3.69
7063 16810 4.822350 GGCATTACCCTCTTCCATTTAGAC 59.178 45.833 0.00 0.00 0.00 2.59
7115 16877 3.249799 CGTGTGACAAATTGTTGGAGCTA 59.750 43.478 0.00 0.00 39.22 3.32
7119 16881 6.701400 GTGTGACAAATTGTTGGAGCTAAAAT 59.299 34.615 0.00 0.00 39.22 1.82
7129 16891 5.010922 TGTTGGAGCTAAAATGAGCATTTGT 59.989 36.000 9.02 3.45 45.43 2.83
7130 16892 5.314923 TGGAGCTAAAATGAGCATTTGTC 57.685 39.130 9.02 4.84 45.43 3.18
7133 16895 4.726416 AGCTAAAATGAGCATTTGTCACG 58.274 39.130 9.02 0.00 45.43 4.35
7134 16896 3.853671 GCTAAAATGAGCATTTGTCACGG 59.146 43.478 9.02 0.00 42.36 4.94
7135 16897 3.302365 AAAATGAGCATTTGTCACGGG 57.698 42.857 9.02 0.00 40.57 5.28
7136 16898 2.198827 AATGAGCATTTGTCACGGGA 57.801 45.000 0.00 0.00 0.00 5.14
7137 16899 2.198827 ATGAGCATTTGTCACGGGAA 57.801 45.000 0.00 0.00 0.00 3.97
7139 16901 1.811965 TGAGCATTTGTCACGGGAATG 59.188 47.619 0.00 0.00 34.67 2.67
7140 16902 1.133025 GAGCATTTGTCACGGGAATGG 59.867 52.381 0.00 0.00 32.73 3.16
7141 16903 1.173043 GCATTTGTCACGGGAATGGA 58.827 50.000 0.00 0.00 32.73 3.41
7142 16904 1.750778 GCATTTGTCACGGGAATGGAT 59.249 47.619 0.00 0.00 32.73 3.41
7143 16905 2.480073 GCATTTGTCACGGGAATGGATG 60.480 50.000 0.00 0.00 32.73 3.51
7145 16907 3.704800 TTTGTCACGGGAATGGATGTA 57.295 42.857 0.00 0.00 0.00 2.29
7147 16909 3.469008 TGTCACGGGAATGGATGTATC 57.531 47.619 0.00 0.00 0.00 2.24
7149 16911 4.219919 TGTCACGGGAATGGATGTATCTA 58.780 43.478 0.00 0.00 0.00 1.98
7150 16912 4.280929 TGTCACGGGAATGGATGTATCTAG 59.719 45.833 0.00 0.00 0.00 2.43
7151 16913 4.523173 GTCACGGGAATGGATGTATCTAGA 59.477 45.833 0.00 0.00 0.00 2.43
7152 16914 5.010719 GTCACGGGAATGGATGTATCTAGAA 59.989 44.000 0.00 0.00 0.00 2.10
7153 16915 5.010719 TCACGGGAATGGATGTATCTAGAAC 59.989 44.000 0.00 0.00 0.00 3.01
7154 16916 5.011125 CACGGGAATGGATGTATCTAGAACT 59.989 44.000 0.00 0.00 0.00 3.01
7157 16919 7.289317 ACGGGAATGGATGTATCTAGAACTAAA 59.711 37.037 0.00 0.00 0.00 1.85
7158 16920 8.148351 CGGGAATGGATGTATCTAGAACTAAAA 58.852 37.037 0.00 0.00 0.00 1.52
7185 16947 8.492673 AAGTCTAGATACATTCATTTTTGCGA 57.507 30.769 0.00 0.00 0.00 5.10
7186 16948 7.910304 AGTCTAGATACATTCATTTTTGCGAC 58.090 34.615 0.00 0.00 0.00 5.19
7187 16949 7.549134 AGTCTAGATACATTCATTTTTGCGACA 59.451 33.333 0.00 0.00 0.00 4.35
7188 16950 8.175069 GTCTAGATACATTCATTTTTGCGACAA 58.825 33.333 0.00 0.00 0.00 3.18
7189 16951 8.390354 TCTAGATACATTCATTTTTGCGACAAG 58.610 33.333 0.00 0.00 0.00 3.16
7190 16952 6.913170 AGATACATTCATTTTTGCGACAAGT 58.087 32.000 0.00 0.00 0.00 3.16
7191 16953 8.039603 AGATACATTCATTTTTGCGACAAGTA 57.960 30.769 0.00 0.00 0.00 2.24
7192 16954 8.511321 AGATACATTCATTTTTGCGACAAGTAA 58.489 29.630 0.00 0.00 0.00 2.24
7193 16955 9.289303 GATACATTCATTTTTGCGACAAGTAAT 57.711 29.630 0.00 0.00 0.00 1.89
7194 16956 7.945033 ACATTCATTTTTGCGACAAGTAATT 57.055 28.000 0.00 0.00 0.00 1.40
7195 16957 8.006741 ACATTCATTTTTGCGACAAGTAATTC 57.993 30.769 0.00 0.00 0.00 2.17
7196 16958 7.116233 ACATTCATTTTTGCGACAAGTAATTCC 59.884 33.333 0.00 0.00 0.00 3.01
7197 16959 5.150683 TCATTTTTGCGACAAGTAATTCCG 58.849 37.500 0.00 0.00 0.00 4.30
7198 16960 4.815040 TTTTTGCGACAAGTAATTCCGA 57.185 36.364 0.00 0.00 0.00 4.55
7199 16961 4.815040 TTTTGCGACAAGTAATTCCGAA 57.185 36.364 0.00 0.00 0.00 4.30
7200 16962 3.799137 TTGCGACAAGTAATTCCGAAC 57.201 42.857 0.00 0.00 0.00 3.95
7201 16963 1.722464 TGCGACAAGTAATTCCGAACG 59.278 47.619 0.00 0.00 0.00 3.95
7202 16964 1.060122 GCGACAAGTAATTCCGAACGG 59.940 52.381 6.94 6.94 0.00 4.44
7203 16965 2.598589 CGACAAGTAATTCCGAACGGA 58.401 47.619 12.04 12.04 43.52 4.69
7204 16966 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
7205 16967 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
7206 16968 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
7207 16969 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
7208 16970 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
7415 17300 3.024547 GCTGTCTGGTACTCTGGTATGA 58.975 50.000 0.00 0.00 0.00 2.15
7471 17522 5.406477 GCTACTATGTGATGCGATTGATCAA 59.594 40.000 11.26 11.26 31.65 2.57
7605 17658 2.666994 GAGGCAACGCTAGTACTGAAAC 59.333 50.000 5.39 0.00 46.39 2.78
7607 17660 3.000727 GGCAACGCTAGTACTGAAACAT 58.999 45.455 5.39 0.00 0.00 2.71
7678 18106 0.328926 TCTCACATGCATGCTGGGAA 59.671 50.000 26.53 10.68 0.00 3.97
7721 18150 6.292596 CGAAATCAGAGGCTAAGAGCATTTAC 60.293 42.308 0.21 0.00 44.75 2.01
7723 18152 3.134804 TCAGAGGCTAAGAGCATTTACCC 59.865 47.826 0.21 0.00 44.75 3.69
7745 18174 2.159627 CGTCATGTTACTTCTGTTGGGC 59.840 50.000 0.00 0.00 0.00 5.36
7755 18184 3.571401 ACTTCTGTTGGGCTGATTTTCTG 59.429 43.478 0.00 0.00 0.00 3.02
7762 18191 1.541588 GGGCTGATTTTCTGTGGTGTC 59.458 52.381 0.00 0.00 0.00 3.67
7764 18193 2.143122 GCTGATTTTCTGTGGTGTCGA 58.857 47.619 0.00 0.00 0.00 4.20
7765 18194 2.548057 GCTGATTTTCTGTGGTGTCGAA 59.452 45.455 0.00 0.00 0.00 3.71
7771 18200 5.356882 TTTTCTGTGGTGTCGAAATCATC 57.643 39.130 0.00 0.00 0.00 2.92
7774 18203 1.628340 TGTGGTGTCGAAATCATCCCT 59.372 47.619 0.00 0.00 0.00 4.20
7808 18237 9.612066 ATGGTGATGTTTTGTGTTTCTTTTTAT 57.388 25.926 0.00 0.00 0.00 1.40
7861 18290 4.721776 ACACTCACATACACCCATCCTTAT 59.278 41.667 0.00 0.00 0.00 1.73
7871 18300 1.651987 CCATCCTTATGAACGCACGT 58.348 50.000 0.00 0.00 34.84 4.49
7873 18302 3.390135 CCATCCTTATGAACGCACGTAT 58.610 45.455 0.00 0.00 34.84 3.06
7874 18303 3.184379 CCATCCTTATGAACGCACGTATG 59.816 47.826 0.00 0.00 34.84 2.39
7909 18338 1.335496 GTGAGCACCTCCGAGATAGTC 59.665 57.143 0.00 0.00 0.00 2.59
7922 18351 2.676839 GAGATAGTCGACACGAAGGTCA 59.323 50.000 19.50 0.00 37.72 4.02
7942 18371 6.237313 GTCACCTACCACTAAACAAACATC 57.763 41.667 0.00 0.00 0.00 3.06
7943 18372 5.761234 GTCACCTACCACTAAACAAACATCA 59.239 40.000 0.00 0.00 0.00 3.07
7945 18374 5.048991 CACCTACCACTAAACAAACATCACC 60.049 44.000 0.00 0.00 0.00 4.02
7946 18375 5.067273 CCTACCACTAAACAAACATCACCA 58.933 41.667 0.00 0.00 0.00 4.17
7950 18379 5.654650 ACCACTAAACAAACATCACCAAAGA 59.345 36.000 0.00 0.00 0.00 2.52
7951 18380 6.153680 ACCACTAAACAAACATCACCAAAGAA 59.846 34.615 0.00 0.00 0.00 2.52
8007 19823 2.338809 ACTCTTGGACATGAACCCTGA 58.661 47.619 0.00 3.19 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.470801 TTTTGCATCCTTCGCACGCC 62.471 55.000 0.00 0.00 39.59 5.68
30 31 1.669795 GCAACCCTTTTGCATCCTTCG 60.670 52.381 4.12 0.00 44.34 3.79
71 72 4.290155 GTTGCAAACTACTGGTGAACATG 58.710 43.478 0.00 0.00 45.32 3.21
72 73 4.568152 GTTGCAAACTACTGGTGAACAT 57.432 40.909 0.00 0.00 45.32 2.71
86 87 2.559440 GCCCTTCACAATTGTTGCAAA 58.441 42.857 8.77 0.66 0.00 3.68
141 142 0.107459 GGCCGCCTCTTCTCTTTGAT 60.107 55.000 0.71 0.00 0.00 2.57
182 184 0.455410 GCCATGTAGGATTTGCGCAA 59.545 50.000 21.02 21.02 41.22 4.85
202 204 2.744202 CTCGCCATTTACTGTTTGCTCT 59.256 45.455 0.00 0.00 0.00 4.09
208 210 1.339727 GGACCCTCGCCATTTACTGTT 60.340 52.381 0.00 0.00 0.00 3.16
242 244 4.089757 TTCCCCCTAGCGGCCTCT 62.090 66.667 0.00 0.00 0.00 3.69
249 251 2.824489 GCTTGCGTTCCCCCTAGC 60.824 66.667 0.00 0.00 0.00 3.42
280 282 4.253685 CCTCTGCCTTGTTAGATTTCGAA 58.746 43.478 0.00 0.00 0.00 3.71
287 289 0.118346 TCCCCCTCTGCCTTGTTAGA 59.882 55.000 0.00 0.00 0.00 2.10
293 312 2.612115 CACCTCCCCCTCTGCCTT 60.612 66.667 0.00 0.00 0.00 4.35
338 357 2.355599 CAGCTCTGCGGCCTATCG 60.356 66.667 0.00 0.00 0.00 2.92
425 1660 1.001815 CACTTACAGCCAAAACCACCG 60.002 52.381 0.00 0.00 0.00 4.94
428 1663 1.036707 GCCACTTACAGCCAAAACCA 58.963 50.000 0.00 0.00 0.00 3.67
452 1687 1.181786 GCCCCAATTCAAATCACGGA 58.818 50.000 0.00 0.00 0.00 4.69
455 1690 2.426738 TCATCGCCCCAATTCAAATCAC 59.573 45.455 0.00 0.00 0.00 3.06
686 4092 7.215789 AGGATGATGATTGATGAAGACACTAC 58.784 38.462 0.00 0.00 0.00 2.73
687 4093 7.070322 TGAGGATGATGATTGATGAAGACACTA 59.930 37.037 0.00 0.00 0.00 2.74
688 4094 6.126854 TGAGGATGATGATTGATGAAGACACT 60.127 38.462 0.00 0.00 0.00 3.55
689 4095 6.053650 TGAGGATGATGATTGATGAAGACAC 58.946 40.000 0.00 0.00 0.00 3.67
690 4096 6.243216 TGAGGATGATGATTGATGAAGACA 57.757 37.500 0.00 0.00 0.00 3.41
946 4357 3.941483 CCTGATTACCGATGGGAATATGC 59.059 47.826 0.00 0.00 36.97 3.14
1138 4561 0.320374 TTGAACGCGGAGTGGAAGAT 59.680 50.000 12.47 0.00 45.78 2.40
1350 4773 1.200760 AGTCTACCACCAGGCATGCA 61.201 55.000 21.36 0.00 39.06 3.96
1474 4897 1.204941 GACGCCCTTATCACAGAGTGT 59.795 52.381 0.00 0.00 34.79 3.55
1476 4899 0.824759 GGACGCCCTTATCACAGAGT 59.175 55.000 0.00 0.00 0.00 3.24
1482 4905 2.131709 CGGGAGGACGCCCTTATCA 61.132 63.158 9.48 0.00 46.44 2.15
1518 4941 4.932200 GCATGGTTGATGTAGGACTATAGC 59.068 45.833 0.00 0.00 34.14 2.97
1520 4943 5.508994 CGTGCATGGTTGATGTAGGACTATA 60.509 44.000 0.00 0.00 35.29 1.31
1521 4944 4.708177 GTGCATGGTTGATGTAGGACTAT 58.292 43.478 0.00 0.00 34.14 2.12
1522 4945 3.430236 CGTGCATGGTTGATGTAGGACTA 60.430 47.826 0.00 0.00 35.29 2.59
1523 4946 2.677902 CGTGCATGGTTGATGTAGGACT 60.678 50.000 0.00 0.00 35.29 3.85
1524 4947 1.665679 CGTGCATGGTTGATGTAGGAC 59.334 52.381 0.00 0.00 35.29 3.85
1527 4950 0.378257 GCCGTGCATGGTTGATGTAG 59.622 55.000 25.67 0.00 34.14 2.74
1528 4951 0.322008 TGCCGTGCATGGTTGATGTA 60.322 50.000 25.67 2.09 34.14 2.29
1529 4952 1.603171 TGCCGTGCATGGTTGATGT 60.603 52.632 25.67 0.00 34.14 3.06
1531 4954 0.966875 ATGTGCCGTGCATGGTTGAT 60.967 50.000 25.67 12.06 41.91 2.57
1758 5341 9.774742 GATATTGTTTCAAAGTCCTTGTCATAC 57.225 33.333 0.00 0.00 36.34 2.39
1830 5413 8.070034 AGAATGCATCATTTTCTTTCACCATA 57.930 30.769 0.00 0.00 33.90 2.74
1912 5497 5.126061 ACTTGGCAGCTGAAACCTAATATTG 59.874 40.000 20.43 0.00 0.00 1.90
1952 5537 3.775316 AGCCTCTTATATTATGGGACGGG 59.225 47.826 0.00 0.00 0.00 5.28
1971 5556 5.581085 GGTTCACATATCGGATGTAATAGCC 59.419 44.000 0.00 2.29 0.00 3.93
2037 5622 1.339097 ATACATGGTACTCCCTCCGC 58.661 55.000 0.00 0.00 0.00 5.54
2073 6087 8.896744 CATAACATTAGATTGAGTGTCAATGGT 58.103 33.333 6.88 0.00 46.20 3.55
2106 6128 7.117236 TGTTTTCCATCACTAGTTTCATACGTC 59.883 37.037 0.00 0.00 0.00 4.34
2151 6214 6.389830 TTCTTCTTGCTTTCATTTGTAGCA 57.610 33.333 0.00 0.00 42.71 3.49
2154 6217 9.814899 TTGAATTTCTTCTTGCTTTCATTTGTA 57.185 25.926 0.00 0.00 32.29 2.41
2398 9487 1.180029 GCATGTTGACTCTGGCCAAT 58.820 50.000 7.01 0.00 0.00 3.16
2399 9488 0.178995 TGCATGTTGACTCTGGCCAA 60.179 50.000 7.01 0.00 0.00 4.52
2406 9495 9.619316 CTCTAATACTACTATGCATGTTGACTC 57.381 37.037 10.16 0.00 0.00 3.36
2544 9638 6.126409 TGTTGTTACACTGAAAATTCCCTCT 58.874 36.000 0.00 0.00 0.00 3.69
2594 9688 8.015658 GCATAACTTGTGTTTTCGTTATTCTCT 58.984 33.333 0.00 0.00 37.59 3.10
2644 9740 8.648557 TTGTTCATACTCATCTACATTGCTAC 57.351 34.615 0.00 0.00 0.00 3.58
2652 9748 8.029522 TGTGTTCTCTTGTTCATACTCATCTAC 58.970 37.037 0.00 0.00 0.00 2.59
2742 9839 8.347771 CCATTAGTTCAATGTCATTCATGTAGG 58.652 37.037 0.00 0.00 42.22 3.18
2750 9847 7.083858 CGTTGTTCCATTAGTTCAATGTCATT 58.916 34.615 0.00 0.00 42.22 2.57
2793 9890 7.333528 TCTATTTGTCCACCTTCATTAATGC 57.666 36.000 10.76 0.00 0.00 3.56
2873 9972 8.072567 CCTCATATGCTTCTTTTATTTTCCGAG 58.927 37.037 0.00 0.00 0.00 4.63
2874 9973 7.556275 ACCTCATATGCTTCTTTTATTTTCCGA 59.444 33.333 0.00 0.00 0.00 4.55
2910 10009 9.679661 TTATCAATGGCTAGTTACAATCAAAGA 57.320 29.630 0.00 0.00 0.00 2.52
2911 10010 9.941664 CTTATCAATGGCTAGTTACAATCAAAG 57.058 33.333 0.00 0.00 0.00 2.77
2914 10013 7.053498 TGCTTATCAATGGCTAGTTACAATCA 58.947 34.615 0.00 0.00 0.00 2.57
2915 10014 7.442364 TCTGCTTATCAATGGCTAGTTACAATC 59.558 37.037 0.00 0.00 0.00 2.67
2916 10015 7.282585 TCTGCTTATCAATGGCTAGTTACAAT 58.717 34.615 0.00 0.00 0.00 2.71
2934 10033 3.733443 TCATCGCTGCTTATCTGCTTA 57.267 42.857 0.00 0.00 37.48 3.09
3066 10276 6.211184 ACCATAGTTGGATTTCTCAATTGCAA 59.789 34.615 0.00 0.00 46.92 4.08
3128 10339 5.840940 AGCACTTATGTCTTGTACGAAAC 57.159 39.130 0.00 0.00 0.00 2.78
3266 10479 0.466543 AAGTGTACAGTTGTGGCCGA 59.533 50.000 15.17 0.00 0.00 5.54
3358 10584 4.371948 CGAAGTTTTAAACGAAAGACAGCG 59.628 41.667 1.95 0.00 36.23 5.18
3412 10638 4.261155 GCATCACATTCGCCAAATAGCTAA 60.261 41.667 0.00 0.00 0.00 3.09
3458 10692 3.069016 TCTCTTGTCACGGTTCAGCTTAA 59.931 43.478 0.00 0.00 0.00 1.85
3470 10704 3.471680 ACCTCTGCTTTTCTCTTGTCAC 58.528 45.455 0.00 0.00 0.00 3.67
3492 10727 2.787994 AGCCCATGTTCTCAACAAGAG 58.212 47.619 0.00 0.00 45.86 2.85
3528 10764 4.511527 CATATAGGTTGCTCTATGGGCAG 58.488 47.826 0.00 0.00 40.90 4.85
3535 10771 3.005472 GGTGACGCATATAGGTTGCTCTA 59.995 47.826 0.00 0.00 37.96 2.43
3537 10773 2.135933 GGTGACGCATATAGGTTGCTC 58.864 52.381 0.00 0.00 37.96 4.26
3539 10775 1.948104 TGGTGACGCATATAGGTTGC 58.052 50.000 0.00 0.00 36.74 4.17
3574 10810 4.374689 TGTATGAGGCTTGTTTGGGTTA 57.625 40.909 0.00 0.00 0.00 2.85
3636 10883 6.757897 TGCTGAAATATTTTGGGTACTCTG 57.242 37.500 1.43 0.00 0.00 3.35
3669 10916 9.463443 GTGTATAAGGCTTTAAATGCAATTAGG 57.537 33.333 4.45 0.00 33.67 2.69
3716 10963 7.253750 GGTTGTTCGTGTATGTTACCGTAATAG 60.254 40.741 0.00 0.00 0.00 1.73
3722 10969 3.058450 TGGTTGTTCGTGTATGTTACCG 58.942 45.455 0.00 0.00 0.00 4.02
3809 11056 3.490348 GCATAGATTTGGTGCCCACTAT 58.510 45.455 0.00 0.00 30.78 2.12
3834 11081 5.617087 GCCTTTTGATGGTTCTCGAACTAAC 60.617 44.000 9.41 3.57 40.94 2.34
3839 11086 2.552315 GTGCCTTTTGATGGTTCTCGAA 59.448 45.455 0.00 0.00 0.00 3.71
4014 11261 9.595823 GCCAGAACTGACATTAGTAATTTACTA 57.404 33.333 11.43 11.43 40.14 1.82
4015 11262 7.553044 GGCCAGAACTGACATTAGTAATTTACT 59.447 37.037 13.36 13.36 42.68 2.24
4016 11263 7.335924 TGGCCAGAACTGACATTAGTAATTTAC 59.664 37.037 0.00 0.00 0.00 2.01
4017 11264 7.335924 GTGGCCAGAACTGACATTAGTAATTTA 59.664 37.037 5.11 0.00 0.00 1.40
4018 11265 6.151144 GTGGCCAGAACTGACATTAGTAATTT 59.849 38.462 5.11 0.00 0.00 1.82
4019 11266 5.648092 GTGGCCAGAACTGACATTAGTAATT 59.352 40.000 5.11 0.00 0.00 1.40
4020 11267 5.045578 AGTGGCCAGAACTGACATTAGTAAT 60.046 40.000 5.11 0.00 0.00 1.89
4050 11297 5.240183 GCATTGATCTTGCCATAGCTTTCTA 59.760 40.000 9.32 0.00 40.80 2.10
4058 11305 4.818005 CACTACTGCATTGATCTTGCCATA 59.182 41.667 15.61 8.94 39.39 2.74
4064 11311 4.458397 CCATCCACTACTGCATTGATCTT 58.542 43.478 0.00 0.00 0.00 2.40
4079 11326 4.447342 CACTGGGCCCCCATCCAC 62.447 72.222 22.27 0.00 46.15 4.02
4083 11330 2.772924 CTTTCACTGGGCCCCCAT 59.227 61.111 22.27 0.28 46.15 4.00
4089 11336 4.156455 TGATAGATTCCTTTCACTGGGC 57.844 45.455 0.00 0.00 0.00 5.36
4091 11338 5.994250 TCCTTGATAGATTCCTTTCACTGG 58.006 41.667 0.00 0.00 31.59 4.00
4092 11339 7.391554 TGTTTCCTTGATAGATTCCTTTCACTG 59.608 37.037 0.00 0.00 31.59 3.66
4094 11341 7.687941 TGTTTCCTTGATAGATTCCTTTCAC 57.312 36.000 0.00 0.00 31.59 3.18
4216 11467 8.613060 ACATCGATCTTATGATATGCTTGTTT 57.387 30.769 10.83 0.00 32.19 2.83
4248 11499 1.069227 GTTTAGCGTGCTTCCACCAAG 60.069 52.381 0.00 0.00 38.79 3.61
4251 11502 0.948678 TTGTTTAGCGTGCTTCCACC 59.051 50.000 0.00 0.00 38.79 4.61
4253 11504 3.119459 TGTTTTTGTTTAGCGTGCTTCCA 60.119 39.130 0.00 0.00 0.00 3.53
4300 11552 6.036470 GCCTTGCTTCTTATGGATTTGTTAC 58.964 40.000 0.00 0.00 0.00 2.50
4372 12734 6.699642 GGAAGTTGCTTTTAAATGCAGTTACA 59.300 34.615 23.02 10.08 39.73 2.41
4394 12756 6.839124 ATGAGTTGTGATAATGCTTTGGAA 57.161 33.333 0.00 0.00 0.00 3.53
4415 12777 4.494091 ACCTTGAGTCCTCCAACATATG 57.506 45.455 0.00 0.00 0.00 1.78
4420 12782 3.617775 GCTCTAACCTTGAGTCCTCCAAC 60.618 52.174 0.00 0.00 34.30 3.77
4437 12799 7.767250 ATGCTAGTGATTACAGTATGCTCTA 57.233 36.000 0.00 0.00 42.53 2.43
4449 12811 7.508687 TGCTTCCATCTTAATGCTAGTGATTA 58.491 34.615 0.00 0.00 0.00 1.75
4481 12844 3.256631 ACATGAAGCTGCTTTTACTTGGG 59.743 43.478 17.10 3.73 0.00 4.12
4519 12883 3.371166 CGCCAGGGGTAATCCTTCTTTTA 60.371 47.826 0.00 0.00 34.31 1.52
4525 12889 0.620700 AGACGCCAGGGGTAATCCTT 60.621 55.000 9.64 0.00 34.31 3.36
4691 13062 2.438021 GTGGCCACTGGATTAGATGGTA 59.562 50.000 29.12 0.00 33.06 3.25
4751 13138 1.539496 GCGGTGTGTGTTGAAGGTCTA 60.539 52.381 0.00 0.00 0.00 2.59
4757 13144 1.358402 GCATGCGGTGTGTGTTGAA 59.642 52.632 0.00 0.00 0.00 2.69
4783 13170 3.564027 GGCGGCGTCGGATTCTTG 61.564 66.667 13.05 0.00 36.79 3.02
4815 13202 4.958509 TGCATTGATCTCTCCTGAAGATC 58.041 43.478 6.24 6.24 38.98 2.75
4863 13251 2.279517 GGTGCTATCTGGCGTCGG 60.280 66.667 0.00 0.00 34.52 4.79
4888 13298 1.340465 GTGTTCATAGACGTGCGCG 59.660 57.895 19.78 19.78 44.93 6.86
4959 13369 2.182842 GCCTGGCATTCGAAGCGAT 61.183 57.895 15.17 0.00 35.23 4.58
4964 13374 4.408821 AGCGGCCTGGCATTCGAA 62.409 61.111 22.05 0.00 34.64 3.71
4967 13377 4.802051 TGGAGCGGCCTGGCATTC 62.802 66.667 22.05 13.69 37.63 2.67
4993 13403 0.747255 CTACAGGGACCATGGACGAG 59.253 60.000 21.47 8.14 0.00 4.18
5009 13420 3.209410 CATGGAAGGGTTCATCAGCTAC 58.791 50.000 0.00 0.00 0.00 3.58
5014 13425 0.033208 GGGCATGGAAGGGTTCATCA 60.033 55.000 0.00 0.00 0.00 3.07
5047 13465 0.457035 GATGGCGGCATTCATGTGTT 59.543 50.000 26.52 0.00 0.00 3.32
5057 13479 1.893335 CAATCGGATGATGGCGGCA 60.893 57.895 16.34 16.34 34.24 5.69
5105 13527 1.634702 GTGAAGCTAGCACCTCTTCG 58.365 55.000 18.83 0.00 39.12 3.79
5116 13539 1.069204 GGCATCATCGAGGTGAAGCTA 59.931 52.381 13.94 0.00 41.26 3.32
5169 13592 0.250234 CGATGGAAGAAGCTGGTGGA 59.750 55.000 0.00 0.00 0.00 4.02
5170 13593 0.745845 CCGATGGAAGAAGCTGGTGG 60.746 60.000 0.00 0.00 0.00 4.61
5181 13604 0.391130 CTTGTCTTCGGCCGATGGAA 60.391 55.000 33.09 25.12 0.00 3.53
5211 13634 2.355716 GGATTCTCGTGGGACCAAATCA 60.356 50.000 12.86 0.00 0.00 2.57
5217 13640 0.106894 GGATGGATTCTCGTGGGACC 59.893 60.000 0.00 0.00 0.00 4.46
5293 13716 2.126618 GATGTGCGTGGTCGTCGA 60.127 61.111 0.00 0.00 39.49 4.20
5296 13719 2.738521 GCTGATGTGCGTGGTCGT 60.739 61.111 0.00 0.00 39.49 4.34
5304 13727 2.393768 CGGTGGAGTGCTGATGTGC 61.394 63.158 0.00 0.00 0.00 4.57
5357 13782 2.833913 CCAGGCTCCAGTGGTGGTT 61.834 63.158 9.54 0.00 45.28 3.67
5454 15178 1.139654 TGGCTCCGGATCAGATTGAAG 59.860 52.381 3.57 0.00 0.00 3.02
5509 15251 3.268103 AAGAAGCCCGCGGTGGATT 62.268 57.895 26.12 15.04 42.00 3.01
5526 15269 1.896660 GGCGGCAGGTGAAACTCAA 60.897 57.895 3.07 0.00 36.74 3.02
5575 15318 2.032634 GGCAGCGACAATGTCCGAA 61.033 57.895 7.91 0.00 0.00 4.30
5621 15364 2.060980 GGTGGAGATCGGCCAGAGT 61.061 63.158 2.24 0.00 35.77 3.24
5676 15419 4.101448 GCCTCAGTCCATGGCGGT 62.101 66.667 6.96 0.00 37.11 5.68
5720 15463 2.435938 GTTGAATGGCGGCGAGGA 60.436 61.111 12.98 0.00 0.00 3.71
5770 15513 3.429085 CGGTAAAGCTCATGCATTTGAC 58.571 45.455 0.00 0.00 42.74 3.18
5780 15523 0.613260 ACAGCATCCGGTAAAGCTCA 59.387 50.000 0.00 0.00 34.61 4.26
5793 15536 4.101448 GCAGTCGGGGGACAGCAT 62.101 66.667 6.72 0.00 37.50 3.79
5811 15554 2.652348 TCTCCTCTCCTTCCTCTCTGTT 59.348 50.000 0.00 0.00 0.00 3.16
5818 15561 1.412937 GCTCCATCTCCTCTCCTTCCT 60.413 57.143 0.00 0.00 0.00 3.36
5827 15570 3.036429 GCCAACCGCTCCATCTCCT 62.036 63.158 0.00 0.00 0.00 3.69
5841 15587 1.271707 GGCACTAACCTTAGGTGCCAA 60.272 52.381 25.18 1.66 46.03 4.52
5847 15593 0.464452 CGGGAGGCACTAACCTTAGG 59.536 60.000 0.00 0.00 41.55 2.69
5884 15630 2.469274 TAACTCTCCTCTCGTGTCGT 57.531 50.000 0.00 0.00 0.00 4.34
5892 15638 6.365520 ACAACCATTGTTTTAACTCTCCTCT 58.634 36.000 0.00 0.00 42.22 3.69
5917 15663 5.016173 ACCATTGTTTTAGCTCTATTGGCA 58.984 37.500 0.00 0.00 0.00 4.92
5928 15674 7.274033 CACATGATGCTACAACCATTGTTTTAG 59.726 37.037 0.00 0.00 42.22 1.85
5968 15714 9.520204 GACTAGCAATGCATGTTTTGTATAATT 57.480 29.630 8.35 0.00 29.61 1.40
5970 15716 7.186128 CGACTAGCAATGCATGTTTTGTATAA 58.814 34.615 8.35 0.00 29.61 0.98
6000 15746 4.100808 TGAGCATGGTACTGTGCATATGTA 59.899 41.667 19.90 0.00 41.61 2.29
6012 15758 3.081061 TGATTGTGGTTGAGCATGGTAC 58.919 45.455 0.00 0.00 0.00 3.34
6065 15811 2.295253 ATGCGAGTCCCGTTTCTAAG 57.705 50.000 0.00 0.00 41.15 2.18
6109 15856 2.499197 TGTGTGGATGCACGTGTATTT 58.501 42.857 20.36 0.00 41.94 1.40
6281 16028 7.943079 AGAACACATTGATGATTCCACAATA 57.057 32.000 0.00 0.00 33.73 1.90
6404 16151 4.820284 GGCACCTAAAGATATCTTGTGC 57.180 45.455 31.89 31.89 45.15 4.57
6616 16363 4.168883 GGGTAGGCCTATCTTACCTGAAT 58.831 47.826 22.45 0.00 34.92 2.57
6623 16370 1.546323 CCGTCGGGTAGGCCTATCTTA 60.546 57.143 22.45 8.29 34.45 2.10
6644 16391 1.065854 CCTCGCACCTCTTCCTCAAAT 60.066 52.381 0.00 0.00 0.00 2.32
6659 16406 1.146263 CACCATTCCCCTACCTCGC 59.854 63.158 0.00 0.00 0.00 5.03
6899 16646 6.473397 TGGCAAAACAACTTTTTAACACTG 57.527 33.333 0.00 0.00 0.00 3.66
6923 16670 1.898472 CTCAGCTCTCCACCTTCTTCA 59.102 52.381 0.00 0.00 0.00 3.02
6939 16686 1.172180 TTGTTTGCCCTTCGCCTCAG 61.172 55.000 0.00 0.00 36.24 3.35
7115 16877 2.890311 TCCCGTGACAAATGCTCATTTT 59.110 40.909 5.19 0.00 38.84 1.82
7119 16881 1.811965 CATTCCCGTGACAAATGCTCA 59.188 47.619 0.00 0.00 0.00 4.26
7129 16891 4.736473 TCTAGATACATCCATTCCCGTGA 58.264 43.478 0.00 0.00 0.00 4.35
7130 16892 5.011125 AGTTCTAGATACATCCATTCCCGTG 59.989 44.000 0.00 0.00 0.00 4.94
7159 16921 9.594478 TCGCAAAAATGAATGTATCTAGACTTA 57.406 29.630 0.00 0.00 0.00 2.24
7161 16923 7.549134 TGTCGCAAAAATGAATGTATCTAGACT 59.451 33.333 0.00 0.00 0.00 3.24
7164 16926 8.177663 ACTTGTCGCAAAAATGAATGTATCTAG 58.822 33.333 0.00 0.00 0.00 2.43
7165 16927 8.039603 ACTTGTCGCAAAAATGAATGTATCTA 57.960 30.769 0.00 0.00 0.00 1.98
7166 16928 6.913170 ACTTGTCGCAAAAATGAATGTATCT 58.087 32.000 0.00 0.00 0.00 1.98
7173 16935 5.627367 CGGAATTACTTGTCGCAAAAATGAA 59.373 36.000 0.00 0.00 0.00 2.57
7176 16938 5.365403 TCGGAATTACTTGTCGCAAAAAT 57.635 34.783 0.00 0.00 0.00 1.82
7177 16939 4.815040 TCGGAATTACTTGTCGCAAAAA 57.185 36.364 0.00 0.00 0.00 1.94
7179 16941 3.363182 CGTTCGGAATTACTTGTCGCAAA 60.363 43.478 0.00 0.00 0.00 3.68
7180 16942 2.156117 CGTTCGGAATTACTTGTCGCAA 59.844 45.455 0.00 0.00 0.00 4.85
7182 16944 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.00 0.00 5.19
7183 16945 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
7184 16946 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
7185 16947 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
7186 16948 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
7187 16949 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
7188 16950 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
7189 16951 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
7190 16952 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
7191 16953 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
7192 16954 2.083628 ATACTCCCTCCGTTCGGAAT 57.916 50.000 14.79 2.14 33.41 3.01
7193 16955 2.734755 TATACTCCCTCCGTTCGGAA 57.265 50.000 14.79 0.00 33.41 4.30
7194 16956 2.965671 ATATACTCCCTCCGTTCGGA 57.034 50.000 13.34 13.34 0.00 4.55
7195 16957 4.267536 TGATATATACTCCCTCCGTTCGG 58.732 47.826 4.74 4.74 0.00 4.30
7196 16958 5.892160 TTGATATATACTCCCTCCGTTCG 57.108 43.478 0.00 0.00 0.00 3.95
7197 16959 6.590677 GCTTTTGATATATACTCCCTCCGTTC 59.409 42.308 0.00 0.00 0.00 3.95
7198 16960 6.042781 TGCTTTTGATATATACTCCCTCCGTT 59.957 38.462 0.00 0.00 0.00 4.44
7199 16961 5.542635 TGCTTTTGATATATACTCCCTCCGT 59.457 40.000 0.00 0.00 0.00 4.69
7200 16962 6.037786 TGCTTTTGATATATACTCCCTCCG 57.962 41.667 0.00 0.00 0.00 4.63
7201 16963 7.856415 AGATGCTTTTGATATATACTCCCTCC 58.144 38.462 0.00 0.00 0.00 4.30
7236 16998 3.604875 TCTTACACATCCCTTCCGAAC 57.395 47.619 0.00 0.00 0.00 3.95
7237 16999 4.627284 TTTCTTACACATCCCTTCCGAA 57.373 40.909 0.00 0.00 0.00 4.30
7238 17000 4.837093 ATTTCTTACACATCCCTTCCGA 57.163 40.909 0.00 0.00 0.00 4.55
7239 17001 6.525629 AGATATTTCTTACACATCCCTTCCG 58.474 40.000 0.00 0.00 0.00 4.30
7387 17272 2.434336 AGAGTACCAGACAGCACAAACA 59.566 45.455 0.00 0.00 0.00 2.83
7390 17275 1.344438 CCAGAGTACCAGACAGCACAA 59.656 52.381 0.00 0.00 0.00 3.33
7415 17300 2.029828 TGTTATTTGGGCGCACGAAAAT 60.030 40.909 17.95 14.51 30.42 1.82
7605 17658 1.011333 CGGCGGGGTTACTTGTAATG 58.989 55.000 0.00 0.00 0.00 1.90
7607 17660 1.375780 GCGGCGGGGTTACTTGTAA 60.376 57.895 9.78 0.00 0.00 2.41
7678 18106 2.494918 GCGGTATGTGTCGCCTCT 59.505 61.111 0.00 0.00 45.42 3.69
7721 18150 2.742053 CAACAGAAGTAACATGACGGGG 59.258 50.000 0.00 0.00 0.00 5.73
7723 18152 2.742053 CCCAACAGAAGTAACATGACGG 59.258 50.000 0.00 0.00 0.00 4.79
7745 18174 4.811555 TTTCGACACCACAGAAAATCAG 57.188 40.909 0.00 0.00 31.82 2.90
7755 18184 2.403252 AGGGATGATTTCGACACCAC 57.597 50.000 0.00 0.00 0.00 4.16
7762 18191 7.228507 TCACCATAATGTTAAGGGATGATTTCG 59.771 37.037 0.00 0.00 0.00 3.46
7764 18193 8.863086 CATCACCATAATGTTAAGGGATGATTT 58.137 33.333 13.96 0.00 34.62 2.17
7765 18194 8.006564 ACATCACCATAATGTTAAGGGATGATT 58.993 33.333 20.09 7.18 35.35 2.57
7771 18200 7.545265 CACAAAACATCACCATAATGTTAAGGG 59.455 37.037 2.24 0.00 44.44 3.95
7774 18203 9.823647 AAACACAAAACATCACCATAATGTTAA 57.176 25.926 2.24 0.00 44.44 2.01
7807 18236 7.217200 AGCATCCACGATTGTACTGTATTAAT 58.783 34.615 0.00 0.00 0.00 1.40
7808 18237 6.578944 AGCATCCACGATTGTACTGTATTAA 58.421 36.000 0.00 0.00 0.00 1.40
7871 18300 3.638627 CTCACAGGGATAGAGTGTGCATA 59.361 47.826 0.00 0.00 41.17 3.14
7873 18302 1.827344 CTCACAGGGATAGAGTGTGCA 59.173 52.381 0.00 0.00 41.17 4.57
7874 18303 1.472376 GCTCACAGGGATAGAGTGTGC 60.472 57.143 0.00 0.00 42.82 4.57
7909 18338 0.109412 GGTAGGTGACCTTCGTGTCG 60.109 60.000 10.53 0.00 45.89 4.35
7922 18351 5.067954 GGTGATGTTTGTTTAGTGGTAGGT 58.932 41.667 0.00 0.00 0.00 3.08
7962 19778 0.887933 CTGGTGCCCGCTTTTTATGT 59.112 50.000 0.00 0.00 0.00 2.29
7966 19782 3.128375 CACTGGTGCCCGCTTTTT 58.872 55.556 0.00 0.00 0.00 1.94
7988 19804 3.276857 CATCAGGGTTCATGTCCAAGAG 58.723 50.000 10.68 0.40 0.00 2.85
8007 19823 3.965258 TGCGGTGAACCAGCCCAT 61.965 61.111 11.84 0.00 35.64 4.00
8019 19835 1.833787 ATGGTTAGGTTCGGTGCGGT 61.834 55.000 0.00 0.00 0.00 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.