Multiple sequence alignment - TraesCS3B01G574200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G574200 chr3B 100.000 2549 0 0 1 2549 804660464 804663012 0.000000e+00 4708
1 TraesCS3B01G574200 chr3B 94.982 1993 82 6 568 2549 723101528 723103513 0.000000e+00 3110
2 TraesCS3B01G574200 chr2B 95.382 1992 76 6 567 2549 666075775 666073791 0.000000e+00 3155
3 TraesCS3B01G574200 chr2B 92.537 201 13 2 1 199 582436276 582436076 1.150000e-73 287
4 TraesCS3B01G574200 chr2B 92.079 202 12 4 1 199 138725983 138726183 5.370000e-72 281
5 TraesCS3B01G574200 chr4B 95.317 1986 84 6 568 2549 585994908 585996888 0.000000e+00 3144
6 TraesCS3B01G574200 chr4B 94.642 1997 88 9 564 2549 656538189 656536201 0.000000e+00 3077
7 TraesCS3B01G574200 chr4B 91.960 199 13 3 1 196 253277023 253277221 2.500000e-70 276
8 TraesCS3B01G574200 chr2D 95.188 1995 83 7 566 2549 64508694 64510686 0.000000e+00 3140
9 TraesCS3B01G574200 chr2D 92.424 198 13 2 1 196 549622021 549622218 5.370000e-72 281
10 TraesCS3B01G574200 chr5B 94.900 2000 84 8 558 2548 518021947 518019957 0.000000e+00 3112
11 TraesCS3B01G574200 chr5B 92.574 202 12 3 1 199 293325829 293325628 1.150000e-73 287
12 TraesCS3B01G574200 chr5B 92.537 201 13 2 1 199 386908277 386908477 1.150000e-73 287
13 TraesCS3B01G574200 chrUn 94.428 2010 94 8 555 2549 60558697 60560703 0.000000e+00 3075
14 TraesCS3B01G574200 chr7B 94.637 1995 84 8 566 2549 503449498 503451480 0.000000e+00 3070
15 TraesCS3B01G574200 chr1B 94.422 1990 103 4 568 2549 542264939 542266928 0.000000e+00 3053
16 TraesCS3B01G574200 chr1B 90.995 211 10 8 1 206 647260910 647261116 2.500000e-70 276
17 TraesCS3B01G574200 chr7D 92.929 198 12 2 1 196 276480647 276480844 1.150000e-73 287
18 TraesCS3B01G574200 chr6B 90.865 208 15 4 1 206 257853265 257853470 2.500000e-70 276


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G574200 chr3B 804660464 804663012 2548 False 4708 4708 100.000 1 2549 1 chr3B.!!$F2 2548
1 TraesCS3B01G574200 chr3B 723101528 723103513 1985 False 3110 3110 94.982 568 2549 1 chr3B.!!$F1 1981
2 TraesCS3B01G574200 chr2B 666073791 666075775 1984 True 3155 3155 95.382 567 2549 1 chr2B.!!$R2 1982
3 TraesCS3B01G574200 chr4B 585994908 585996888 1980 False 3144 3144 95.317 568 2549 1 chr4B.!!$F2 1981
4 TraesCS3B01G574200 chr4B 656536201 656538189 1988 True 3077 3077 94.642 564 2549 1 chr4B.!!$R1 1985
5 TraesCS3B01G574200 chr2D 64508694 64510686 1992 False 3140 3140 95.188 566 2549 1 chr2D.!!$F1 1983
6 TraesCS3B01G574200 chr5B 518019957 518021947 1990 True 3112 3112 94.900 558 2548 1 chr5B.!!$R2 1990
7 TraesCS3B01G574200 chrUn 60558697 60560703 2006 False 3075 3075 94.428 555 2549 1 chrUn.!!$F1 1994
8 TraesCS3B01G574200 chr7B 503449498 503451480 1982 False 3070 3070 94.637 566 2549 1 chr7B.!!$F1 1983
9 TraesCS3B01G574200 chr1B 542264939 542266928 1989 False 3053 3053 94.422 568 2549 1 chr1B.!!$F1 1981

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
480 481 0.035343 GGGGAAGTTCTAGCCACACC 60.035 60.0 2.25 0.0 0.0 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1969 1989 2.162906 AAGTCCCCAGCCACACCAT 61.163 57.895 0.0 0.0 0.0 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.717188 GATGACGAAGATCGAAAATCCC 57.283 45.455 6.78 0.00 43.74 3.85
22 23 2.901249 TGACGAAGATCGAAAATCCCC 58.099 47.619 6.78 0.00 43.74 4.81
23 24 2.210961 GACGAAGATCGAAAATCCCCC 58.789 52.381 6.78 0.00 43.74 5.40
24 25 1.838077 ACGAAGATCGAAAATCCCCCT 59.162 47.619 6.78 0.00 43.74 4.79
25 26 2.158943 ACGAAGATCGAAAATCCCCCTC 60.159 50.000 6.78 0.00 43.74 4.30
26 27 2.103263 CGAAGATCGAAAATCCCCCTCT 59.897 50.000 0.00 0.00 43.74 3.69
27 28 3.734463 GAAGATCGAAAATCCCCCTCTC 58.266 50.000 0.00 0.00 0.00 3.20
28 29 3.053359 AGATCGAAAATCCCCCTCTCT 57.947 47.619 0.00 0.00 0.00 3.10
29 30 2.703007 AGATCGAAAATCCCCCTCTCTG 59.297 50.000 0.00 0.00 0.00 3.35
30 31 1.204146 TCGAAAATCCCCCTCTCTGG 58.796 55.000 0.00 0.00 0.00 3.86
31 32 1.204146 CGAAAATCCCCCTCTCTGGA 58.796 55.000 0.00 0.00 38.35 3.86
32 33 1.139853 CGAAAATCCCCCTCTCTGGAG 59.860 57.143 0.00 0.00 38.35 3.86
33 34 0.922626 AAAATCCCCCTCTCTGGAGC 59.077 55.000 0.00 0.00 38.21 4.70
34 35 0.990818 AAATCCCCCTCTCTGGAGCC 60.991 60.000 0.00 0.00 38.21 4.70
35 36 2.923852 AATCCCCCTCTCTGGAGCCC 62.924 65.000 0.00 0.00 38.21 5.19
38 39 4.465446 CCCTCTCTGGAGCCCCGA 62.465 72.222 0.00 0.00 38.21 5.14
39 40 2.364317 CCTCTCTGGAGCCCCGAA 60.364 66.667 0.00 0.00 38.21 4.30
40 41 2.726351 CCTCTCTGGAGCCCCGAAC 61.726 68.421 0.00 0.00 38.21 3.95
41 42 3.068691 TCTCTGGAGCCCCGAACG 61.069 66.667 0.00 0.00 34.29 3.95
42 43 4.148825 CTCTGGAGCCCCGAACGG 62.149 72.222 6.25 6.25 34.29 4.44
43 44 4.689549 TCTGGAGCCCCGAACGGA 62.690 66.667 15.07 0.00 37.50 4.69
44 45 4.452733 CTGGAGCCCCGAACGGAC 62.453 72.222 15.07 6.48 37.50 4.79
46 47 4.144703 GGAGCCCCGAACGGACTC 62.145 72.222 15.07 18.11 37.47 3.36
47 48 3.069318 GAGCCCCGAACGGACTCT 61.069 66.667 15.07 7.99 36.21 3.24
48 49 1.751927 GAGCCCCGAACGGACTCTA 60.752 63.158 15.07 0.00 36.21 2.43
49 50 1.726533 GAGCCCCGAACGGACTCTAG 61.727 65.000 15.07 0.00 36.21 2.43
50 51 1.751927 GCCCCGAACGGACTCTAGA 60.752 63.158 15.07 0.00 37.50 2.43
51 52 1.108132 GCCCCGAACGGACTCTAGAT 61.108 60.000 15.07 0.00 37.50 1.98
52 53 0.953003 CCCCGAACGGACTCTAGATC 59.047 60.000 15.07 0.00 37.50 2.75
53 54 1.477195 CCCCGAACGGACTCTAGATCT 60.477 57.143 15.07 0.00 37.50 2.75
54 55 1.604755 CCCGAACGGACTCTAGATCTG 59.395 57.143 15.07 1.41 37.50 2.90
55 56 1.604755 CCGAACGGACTCTAGATCTGG 59.395 57.143 5.18 1.65 37.50 3.86
56 57 1.002251 CGAACGGACTCTAGATCTGGC 60.002 57.143 5.18 0.00 0.00 4.85
57 58 1.338655 GAACGGACTCTAGATCTGGCC 59.661 57.143 5.18 0.00 0.00 5.36
58 59 0.553819 ACGGACTCTAGATCTGGCCT 59.446 55.000 5.18 0.00 0.00 5.19
59 60 1.243902 CGGACTCTAGATCTGGCCTC 58.756 60.000 5.18 0.00 0.00 4.70
60 61 1.627864 GGACTCTAGATCTGGCCTCC 58.372 60.000 5.18 5.84 0.00 4.30
61 62 1.243902 GACTCTAGATCTGGCCTCCG 58.756 60.000 5.18 0.00 0.00 4.63
62 63 0.847373 ACTCTAGATCTGGCCTCCGA 59.153 55.000 5.18 0.00 0.00 4.55
63 64 1.427368 ACTCTAGATCTGGCCTCCGAT 59.573 52.381 5.18 3.10 0.00 4.18
64 65 1.818060 CTCTAGATCTGGCCTCCGATG 59.182 57.143 5.18 0.00 0.00 3.84
65 66 1.425448 TCTAGATCTGGCCTCCGATGA 59.575 52.381 5.18 0.00 0.00 2.92
66 67 2.158460 TCTAGATCTGGCCTCCGATGAA 60.158 50.000 5.18 0.00 0.00 2.57
67 68 1.047002 AGATCTGGCCTCCGATGAAG 58.953 55.000 3.32 0.00 0.00 3.02
68 69 1.043816 GATCTGGCCTCCGATGAAGA 58.956 55.000 3.32 0.00 0.00 2.87
69 70 1.414181 GATCTGGCCTCCGATGAAGAA 59.586 52.381 3.32 0.00 0.00 2.52
70 71 0.537188 TCTGGCCTCCGATGAAGAAC 59.463 55.000 3.32 0.00 0.00 3.01
71 72 0.250234 CTGGCCTCCGATGAAGAACA 59.750 55.000 3.32 0.00 0.00 3.18
72 73 0.250234 TGGCCTCCGATGAAGAACAG 59.750 55.000 3.32 0.00 0.00 3.16
73 74 0.462759 GGCCTCCGATGAAGAACAGG 60.463 60.000 0.00 0.00 0.00 4.00
74 75 0.537188 GCCTCCGATGAAGAACAGGA 59.463 55.000 0.00 0.00 0.00 3.86
75 76 1.472376 GCCTCCGATGAAGAACAGGAG 60.472 57.143 3.02 3.02 45.90 3.69
78 79 1.472878 TCCGATGAAGAACAGGAGACG 59.527 52.381 0.00 0.00 0.00 4.18
79 80 1.469940 CCGATGAAGAACAGGAGACGG 60.470 57.143 0.00 0.00 0.00 4.79
80 81 1.202582 CGATGAAGAACAGGAGACGGT 59.797 52.381 0.00 0.00 41.96 4.83
81 82 2.611518 GATGAAGAACAGGAGACGGTG 58.388 52.381 0.00 0.00 39.29 4.94
82 83 0.679505 TGAAGAACAGGAGACGGTGG 59.320 55.000 0.00 0.00 39.29 4.61
83 84 0.670854 GAAGAACAGGAGACGGTGGC 60.671 60.000 0.00 0.00 39.29 5.01
84 85 1.407656 AAGAACAGGAGACGGTGGCA 61.408 55.000 0.00 0.00 39.29 4.92
85 86 1.374758 GAACAGGAGACGGTGGCAG 60.375 63.158 0.00 0.00 39.29 4.85
86 87 3.537206 AACAGGAGACGGTGGCAGC 62.537 63.158 6.62 6.62 39.29 5.25
87 88 3.699894 CAGGAGACGGTGGCAGCT 61.700 66.667 15.48 1.59 0.00 4.24
88 89 3.386237 AGGAGACGGTGGCAGCTC 61.386 66.667 15.48 11.00 0.00 4.09
89 90 4.459089 GGAGACGGTGGCAGCTCC 62.459 72.222 15.48 11.20 40.04 4.70
94 95 4.803426 CGGTGGCAGCTCCGTCTC 62.803 72.222 15.48 0.00 41.58 3.36
95 96 4.803426 GGTGGCAGCTCCGTCTCG 62.803 72.222 9.90 0.00 37.80 4.04
96 97 4.057428 GTGGCAGCTCCGTCTCGT 62.057 66.667 0.00 0.00 37.80 4.18
97 98 4.056125 TGGCAGCTCCGTCTCGTG 62.056 66.667 0.00 0.00 37.80 4.35
98 99 3.749064 GGCAGCTCCGTCTCGTGA 61.749 66.667 0.00 0.00 0.00 4.35
99 100 2.258591 GCAGCTCCGTCTCGTGAA 59.741 61.111 0.00 0.00 0.00 3.18
100 101 1.372997 GCAGCTCCGTCTCGTGAAA 60.373 57.895 0.00 0.00 0.00 2.69
101 102 1.618640 GCAGCTCCGTCTCGTGAAAC 61.619 60.000 0.00 0.00 0.00 2.78
118 119 6.095947 GTGAAACGCGATAATTCTTTCTCT 57.904 37.500 15.93 0.00 0.00 3.10
119 120 6.179193 GTGAAACGCGATAATTCTTTCTCTC 58.821 40.000 15.93 2.53 0.00 3.20
120 121 5.004440 TGAAACGCGATAATTCTTTCTCTCG 59.996 40.000 15.93 0.00 0.00 4.04
121 122 4.288670 ACGCGATAATTCTTTCTCTCGA 57.711 40.909 15.93 0.00 0.00 4.04
122 123 4.861210 ACGCGATAATTCTTTCTCTCGAT 58.139 39.130 15.93 0.00 0.00 3.59
123 124 5.282510 ACGCGATAATTCTTTCTCTCGATT 58.717 37.500 15.93 0.00 0.00 3.34
124 125 5.749109 ACGCGATAATTCTTTCTCTCGATTT 59.251 36.000 15.93 0.00 0.00 2.17
125 126 6.255887 ACGCGATAATTCTTTCTCTCGATTTT 59.744 34.615 15.93 0.00 0.00 1.82
126 127 7.119997 CGCGATAATTCTTTCTCTCGATTTTT 58.880 34.615 0.00 0.00 0.00 1.94
152 153 8.902540 TCTGGAATAATGTGATTTTATAGCGT 57.097 30.769 0.00 0.00 0.00 5.07
153 154 8.988934 TCTGGAATAATGTGATTTTATAGCGTC 58.011 33.333 0.00 0.00 0.00 5.19
154 155 7.792925 TGGAATAATGTGATTTTATAGCGTCG 58.207 34.615 0.00 0.00 0.00 5.12
155 156 7.095397 TGGAATAATGTGATTTTATAGCGTCGG 60.095 37.037 0.00 0.00 0.00 4.79
156 157 7.095355 GGAATAATGTGATTTTATAGCGTCGGT 60.095 37.037 1.19 1.19 0.00 4.69
157 158 7.724305 ATAATGTGATTTTATAGCGTCGGTT 57.276 32.000 0.65 0.00 0.00 4.44
158 159 6.431198 AATGTGATTTTATAGCGTCGGTTT 57.569 33.333 0.65 0.00 0.00 3.27
159 160 5.459110 TGTGATTTTATAGCGTCGGTTTC 57.541 39.130 0.65 0.00 0.00 2.78
160 161 4.930405 TGTGATTTTATAGCGTCGGTTTCA 59.070 37.500 0.65 0.00 0.00 2.69
161 162 5.062934 TGTGATTTTATAGCGTCGGTTTCAG 59.937 40.000 0.65 0.00 0.00 3.02
162 163 4.569162 TGATTTTATAGCGTCGGTTTCAGG 59.431 41.667 0.65 0.00 0.00 3.86
163 164 2.589798 TTATAGCGTCGGTTTCAGGG 57.410 50.000 0.65 0.00 0.00 4.45
164 165 1.477553 TATAGCGTCGGTTTCAGGGT 58.522 50.000 0.65 0.00 0.00 4.34
165 166 0.175073 ATAGCGTCGGTTTCAGGGTC 59.825 55.000 0.65 0.00 0.00 4.46
166 167 1.180456 TAGCGTCGGTTTCAGGGTCA 61.180 55.000 0.65 0.00 0.00 4.02
167 168 1.595929 GCGTCGGTTTCAGGGTCAA 60.596 57.895 0.00 0.00 0.00 3.18
168 169 1.838568 GCGTCGGTTTCAGGGTCAAC 61.839 60.000 0.00 0.00 0.00 3.18
169 170 1.554042 CGTCGGTTTCAGGGTCAACG 61.554 60.000 0.00 0.00 0.00 4.10
170 171 1.070105 TCGGTTTCAGGGTCAACGG 59.930 57.895 0.00 0.00 0.00 4.44
171 172 1.964373 CGGTTTCAGGGTCAACGGG 60.964 63.158 0.00 0.00 0.00 5.28
172 173 1.602605 GGTTTCAGGGTCAACGGGG 60.603 63.158 0.00 0.00 0.00 5.73
173 174 2.114411 TTTCAGGGTCAACGGGGC 59.886 61.111 0.00 0.00 0.00 5.80
174 175 3.501040 TTTCAGGGTCAACGGGGCC 62.501 63.158 0.00 0.00 0.00 5.80
209 210 3.128375 CACCAGGTGGGCACAAAC 58.872 61.111 12.40 0.00 42.05 2.93
210 211 1.455587 CACCAGGTGGGCACAAACT 60.456 57.895 12.40 0.00 42.05 2.66
211 212 1.455587 ACCAGGTGGGCACAAACTG 60.456 57.895 13.53 13.53 42.05 3.16
212 213 2.730094 CAGGTGGGCACAAACTGC 59.270 61.111 8.77 0.00 46.31 4.40
219 220 3.625232 GCACAAACTGCGACTCGA 58.375 55.556 1.63 0.00 35.72 4.04
220 221 1.931551 GCACAAACTGCGACTCGAA 59.068 52.632 1.63 0.00 35.72 3.71
221 222 0.512952 GCACAAACTGCGACTCGAAT 59.487 50.000 1.63 0.00 35.72 3.34
222 223 1.069906 GCACAAACTGCGACTCGAATT 60.070 47.619 1.63 0.00 35.72 2.17
223 224 2.563976 CACAAACTGCGACTCGAATTG 58.436 47.619 1.63 0.00 0.00 2.32
224 225 1.069906 ACAAACTGCGACTCGAATTGC 60.070 47.619 1.63 0.00 0.00 3.56
225 226 1.069973 CAAACTGCGACTCGAATTGCA 60.070 47.619 8.74 8.74 37.43 4.08
226 227 1.442769 AACTGCGACTCGAATTGCAT 58.557 45.000 9.58 0.00 38.33 3.96
227 228 1.442769 ACTGCGACTCGAATTGCATT 58.557 45.000 9.58 0.51 38.33 3.56
228 229 1.129251 ACTGCGACTCGAATTGCATTG 59.871 47.619 9.58 1.39 38.33 2.82
229 230 1.394572 CTGCGACTCGAATTGCATTGA 59.605 47.619 9.58 0.00 38.33 2.57
230 231 2.009051 TGCGACTCGAATTGCATTGAT 58.991 42.857 4.31 0.00 33.89 2.57
231 232 2.419673 TGCGACTCGAATTGCATTGATT 59.580 40.909 4.31 0.00 33.89 2.57
232 233 3.119884 TGCGACTCGAATTGCATTGATTT 60.120 39.130 4.31 0.00 33.89 2.17
233 234 4.094146 TGCGACTCGAATTGCATTGATTTA 59.906 37.500 4.31 0.00 33.89 1.40
234 235 4.667948 GCGACTCGAATTGCATTGATTTAG 59.332 41.667 0.15 0.00 0.00 1.85
235 236 5.727791 GCGACTCGAATTGCATTGATTTAGT 60.728 40.000 0.15 0.00 0.00 2.24
236 237 5.674148 CGACTCGAATTGCATTGATTTAGTG 59.326 40.000 0.00 0.00 0.00 2.74
237 238 5.883661 ACTCGAATTGCATTGATTTAGTGG 58.116 37.500 0.00 0.00 0.00 4.00
238 239 5.163622 ACTCGAATTGCATTGATTTAGTGGG 60.164 40.000 0.00 0.00 0.00 4.61
239 240 4.946772 TCGAATTGCATTGATTTAGTGGGA 59.053 37.500 0.00 0.00 0.00 4.37
240 241 5.593909 TCGAATTGCATTGATTTAGTGGGAT 59.406 36.000 0.00 0.00 0.00 3.85
241 242 6.770303 TCGAATTGCATTGATTTAGTGGGATA 59.230 34.615 0.00 0.00 0.00 2.59
242 243 7.448161 TCGAATTGCATTGATTTAGTGGGATAT 59.552 33.333 0.00 0.00 0.00 1.63
243 244 7.539710 CGAATTGCATTGATTTAGTGGGATATG 59.460 37.037 0.00 0.00 0.00 1.78
244 245 6.653526 TTGCATTGATTTAGTGGGATATGG 57.346 37.500 0.00 0.00 0.00 2.74
245 246 5.078949 TGCATTGATTTAGTGGGATATGGG 58.921 41.667 0.00 0.00 0.00 4.00
246 247 5.163001 TGCATTGATTTAGTGGGATATGGGA 60.163 40.000 0.00 0.00 0.00 4.37
247 248 5.416952 GCATTGATTTAGTGGGATATGGGAG 59.583 44.000 0.00 0.00 0.00 4.30
248 249 5.582950 TTGATTTAGTGGGATATGGGAGG 57.417 43.478 0.00 0.00 0.00 4.30
249 250 3.330701 TGATTTAGTGGGATATGGGAGGC 59.669 47.826 0.00 0.00 0.00 4.70
250 251 1.742308 TTAGTGGGATATGGGAGGCC 58.258 55.000 0.00 0.00 0.00 5.19
251 252 0.570727 TAGTGGGATATGGGAGGCCA 59.429 55.000 5.01 0.00 0.00 5.36
252 253 0.103715 AGTGGGATATGGGAGGCCAT 60.104 55.000 5.01 0.00 0.00 4.40
253 254 0.038744 GTGGGATATGGGAGGCCATG 59.961 60.000 5.01 0.00 0.00 3.66
254 255 0.103983 TGGGATATGGGAGGCCATGA 60.104 55.000 5.01 0.00 0.00 3.07
255 256 1.302907 GGGATATGGGAGGCCATGAT 58.697 55.000 5.01 0.00 0.00 2.45
256 257 1.064166 GGGATATGGGAGGCCATGATG 60.064 57.143 5.01 0.00 0.00 3.07
257 258 1.637553 GGATATGGGAGGCCATGATGT 59.362 52.381 5.01 0.00 0.00 3.06
258 259 2.846206 GGATATGGGAGGCCATGATGTA 59.154 50.000 5.01 0.00 0.00 2.29
259 260 3.118112 GGATATGGGAGGCCATGATGTAG 60.118 52.174 5.01 0.00 0.00 2.74
260 261 1.070604 ATGGGAGGCCATGATGTAGG 58.929 55.000 5.01 0.00 0.00 3.18
261 262 0.327480 TGGGAGGCCATGATGTAGGT 60.327 55.000 5.01 0.00 0.00 3.08
262 263 0.398318 GGGAGGCCATGATGTAGGTC 59.602 60.000 5.01 0.00 0.00 3.85
263 264 1.131638 GGAGGCCATGATGTAGGTCA 58.868 55.000 5.01 0.00 29.98 4.02
264 265 1.071385 GGAGGCCATGATGTAGGTCAG 59.929 57.143 5.01 0.00 29.98 3.51
265 266 1.071385 GAGGCCATGATGTAGGTCAGG 59.929 57.143 5.01 0.00 29.98 3.86
269 270 3.652057 CCATGATGTAGGTCAGGGTTT 57.348 47.619 0.00 0.00 43.27 3.27
270 271 3.282021 CCATGATGTAGGTCAGGGTTTG 58.718 50.000 0.00 0.00 43.27 2.93
271 272 3.282021 CATGATGTAGGTCAGGGTTTGG 58.718 50.000 0.00 0.00 0.00 3.28
272 273 2.626785 TGATGTAGGTCAGGGTTTGGA 58.373 47.619 0.00 0.00 0.00 3.53
273 274 2.571653 TGATGTAGGTCAGGGTTTGGAG 59.428 50.000 0.00 0.00 0.00 3.86
274 275 2.409064 TGTAGGTCAGGGTTTGGAGA 57.591 50.000 0.00 0.00 0.00 3.71
275 276 2.915869 TGTAGGTCAGGGTTTGGAGAT 58.084 47.619 0.00 0.00 0.00 2.75
276 277 2.571653 TGTAGGTCAGGGTTTGGAGATG 59.428 50.000 0.00 0.00 0.00 2.90
277 278 2.044793 AGGTCAGGGTTTGGAGATGA 57.955 50.000 0.00 0.00 0.00 2.92
278 279 1.912043 AGGTCAGGGTTTGGAGATGAG 59.088 52.381 0.00 0.00 0.00 2.90
279 280 1.630878 GGTCAGGGTTTGGAGATGAGT 59.369 52.381 0.00 0.00 0.00 3.41
280 281 2.040412 GGTCAGGGTTTGGAGATGAGTT 59.960 50.000 0.00 0.00 0.00 3.01
281 282 3.077359 GTCAGGGTTTGGAGATGAGTTG 58.923 50.000 0.00 0.00 0.00 3.16
282 283 2.040278 TCAGGGTTTGGAGATGAGTTGG 59.960 50.000 0.00 0.00 0.00 3.77
283 284 1.177401 GGGTTTGGAGATGAGTTGGC 58.823 55.000 0.00 0.00 0.00 4.52
284 285 1.547675 GGGTTTGGAGATGAGTTGGCA 60.548 52.381 0.00 0.00 0.00 4.92
285 286 1.815003 GGTTTGGAGATGAGTTGGCAG 59.185 52.381 0.00 0.00 0.00 4.85
286 287 1.815003 GTTTGGAGATGAGTTGGCAGG 59.185 52.381 0.00 0.00 0.00 4.85
287 288 0.329261 TTGGAGATGAGTTGGCAGGG 59.671 55.000 0.00 0.00 0.00 4.45
288 289 0.547471 TGGAGATGAGTTGGCAGGGA 60.547 55.000 0.00 0.00 0.00 4.20
289 290 0.842635 GGAGATGAGTTGGCAGGGAT 59.157 55.000 0.00 0.00 0.00 3.85
290 291 1.213926 GGAGATGAGTTGGCAGGGATT 59.786 52.381 0.00 0.00 0.00 3.01
291 292 2.357569 GGAGATGAGTTGGCAGGGATTT 60.358 50.000 0.00 0.00 0.00 2.17
292 293 3.117888 GGAGATGAGTTGGCAGGGATTTA 60.118 47.826 0.00 0.00 0.00 1.40
293 294 4.446889 GGAGATGAGTTGGCAGGGATTTAT 60.447 45.833 0.00 0.00 0.00 1.40
294 295 5.221925 GGAGATGAGTTGGCAGGGATTTATA 60.222 44.000 0.00 0.00 0.00 0.98
295 296 5.874093 AGATGAGTTGGCAGGGATTTATAG 58.126 41.667 0.00 0.00 0.00 1.31
296 297 3.820557 TGAGTTGGCAGGGATTTATAGC 58.179 45.455 0.00 0.00 0.00 2.97
297 298 2.808543 GAGTTGGCAGGGATTTATAGCG 59.191 50.000 0.00 0.00 0.00 4.26
298 299 1.880027 GTTGGCAGGGATTTATAGCGG 59.120 52.381 0.00 0.00 0.00 5.52
299 300 0.250727 TGGCAGGGATTTATAGCGGC 60.251 55.000 0.00 0.00 0.00 6.53
300 301 0.250727 GGCAGGGATTTATAGCGGCA 60.251 55.000 1.45 0.00 0.00 5.69
301 302 1.614317 GGCAGGGATTTATAGCGGCAT 60.614 52.381 1.45 0.00 0.00 4.40
302 303 2.355716 GGCAGGGATTTATAGCGGCATA 60.356 50.000 1.45 0.00 0.00 3.14
303 304 2.939103 GCAGGGATTTATAGCGGCATAG 59.061 50.000 1.45 0.00 0.00 2.23
304 305 3.535561 CAGGGATTTATAGCGGCATAGG 58.464 50.000 1.45 0.00 0.00 2.57
305 306 2.505819 AGGGATTTATAGCGGCATAGGG 59.494 50.000 1.45 0.00 0.00 3.53
306 307 2.421529 GGGATTTATAGCGGCATAGGGG 60.422 54.545 1.45 0.00 0.00 4.79
307 308 2.289565 GATTTATAGCGGCATAGGGGC 58.710 52.381 1.45 0.00 39.06 5.80
314 315 2.908015 GGCATAGGGGCGAACTGA 59.092 61.111 0.00 0.00 33.57 3.41
315 316 1.227674 GGCATAGGGGCGAACTGAG 60.228 63.158 0.00 0.00 33.57 3.35
316 317 1.889573 GCATAGGGGCGAACTGAGC 60.890 63.158 0.00 0.00 0.00 4.26
317 318 1.826024 CATAGGGGCGAACTGAGCT 59.174 57.895 0.00 0.00 34.52 4.09
318 319 0.249657 CATAGGGGCGAACTGAGCTC 60.250 60.000 6.82 6.82 34.52 4.09
319 320 0.397816 ATAGGGGCGAACTGAGCTCT 60.398 55.000 16.19 0.00 34.99 4.09
320 321 1.323271 TAGGGGCGAACTGAGCTCTG 61.323 60.000 18.15 18.15 34.99 3.35
321 322 2.125350 GGGCGAACTGAGCTCTGG 60.125 66.667 22.75 14.19 34.52 3.86
322 323 2.125350 GGCGAACTGAGCTCTGGG 60.125 66.667 22.75 13.17 34.52 4.45
323 324 2.817396 GCGAACTGAGCTCTGGGC 60.817 66.667 22.75 18.12 42.19 5.36
324 325 2.125350 CGAACTGAGCTCTGGGCC 60.125 66.667 22.75 0.00 43.05 5.80
325 326 2.125350 GAACTGAGCTCTGGGCCG 60.125 66.667 22.75 4.30 43.05 6.13
326 327 2.604686 AACTGAGCTCTGGGCCGA 60.605 61.111 22.75 0.00 43.05 5.54
327 328 1.965754 GAACTGAGCTCTGGGCCGAT 61.966 60.000 22.75 0.00 43.05 4.18
328 329 2.108566 CTGAGCTCTGGGCCGATG 59.891 66.667 16.19 0.00 43.05 3.84
329 330 3.457625 CTGAGCTCTGGGCCGATGG 62.458 68.421 16.19 0.00 43.05 3.51
350 351 6.484364 TGGCTACATCATGAATACAAGAGA 57.516 37.500 0.00 0.00 0.00 3.10
351 352 6.519382 TGGCTACATCATGAATACAAGAGAG 58.481 40.000 0.00 0.00 0.00 3.20
352 353 5.931146 GGCTACATCATGAATACAAGAGAGG 59.069 44.000 0.00 0.00 0.00 3.69
353 354 5.931146 GCTACATCATGAATACAAGAGAGGG 59.069 44.000 0.00 0.00 0.00 4.30
354 355 5.301835 ACATCATGAATACAAGAGAGGGG 57.698 43.478 0.00 0.00 0.00 4.79
355 356 3.845781 TCATGAATACAAGAGAGGGGC 57.154 47.619 0.00 0.00 0.00 5.80
356 357 2.103094 TCATGAATACAAGAGAGGGGCG 59.897 50.000 0.00 0.00 0.00 6.13
357 358 0.830648 TGAATACAAGAGAGGGGCGG 59.169 55.000 0.00 0.00 0.00 6.13
358 359 1.120530 GAATACAAGAGAGGGGCGGA 58.879 55.000 0.00 0.00 0.00 5.54
359 360 1.069358 GAATACAAGAGAGGGGCGGAG 59.931 57.143 0.00 0.00 0.00 4.63
360 361 0.261991 ATACAAGAGAGGGGCGGAGA 59.738 55.000 0.00 0.00 0.00 3.71
361 362 0.395862 TACAAGAGAGGGGCGGAGAG 60.396 60.000 0.00 0.00 0.00 3.20
372 373 4.403976 CGGAGAGCTCGGCTTTAC 57.596 61.111 8.37 0.00 39.88 2.01
373 374 1.227002 CGGAGAGCTCGGCTTTACC 60.227 63.158 8.37 4.01 39.88 2.85
374 375 1.898154 GGAGAGCTCGGCTTTACCA 59.102 57.895 8.37 0.00 39.88 3.25
375 376 0.249398 GGAGAGCTCGGCTTTACCAA 59.751 55.000 8.37 0.00 39.88 3.67
376 377 1.338769 GGAGAGCTCGGCTTTACCAAA 60.339 52.381 8.37 0.00 39.88 3.28
377 378 2.423577 GAGAGCTCGGCTTTACCAAAA 58.576 47.619 8.37 0.00 39.88 2.44
378 379 2.812011 GAGAGCTCGGCTTTACCAAAAA 59.188 45.455 8.37 0.00 39.88 1.94
379 380 3.421844 AGAGCTCGGCTTTACCAAAAAT 58.578 40.909 8.37 0.00 39.88 1.82
380 381 4.585879 AGAGCTCGGCTTTACCAAAAATA 58.414 39.130 8.37 0.00 39.88 1.40
381 382 5.193679 AGAGCTCGGCTTTACCAAAAATAT 58.806 37.500 8.37 0.00 39.88 1.28
382 383 5.297029 AGAGCTCGGCTTTACCAAAAATATC 59.703 40.000 8.37 0.00 39.88 1.63
383 384 5.193679 AGCTCGGCTTTACCAAAAATATCT 58.806 37.500 0.00 0.00 33.89 1.98
384 385 5.297029 AGCTCGGCTTTACCAAAAATATCTC 59.703 40.000 0.00 0.00 33.89 2.75
385 386 5.297029 GCTCGGCTTTACCAAAAATATCTCT 59.703 40.000 0.00 0.00 39.03 3.10
386 387 6.183360 GCTCGGCTTTACCAAAAATATCTCTT 60.183 38.462 0.00 0.00 39.03 2.85
387 388 7.628580 GCTCGGCTTTACCAAAAATATCTCTTT 60.629 37.037 0.00 0.00 39.03 2.52
388 389 8.117813 TCGGCTTTACCAAAAATATCTCTTTT 57.882 30.769 0.00 0.00 39.03 2.27
389 390 8.026607 TCGGCTTTACCAAAAATATCTCTTTTG 58.973 33.333 4.70 4.70 41.42 2.44
390 391 8.026607 CGGCTTTACCAAAAATATCTCTTTTGA 58.973 33.333 11.12 0.00 43.42 2.69
391 392 9.358872 GGCTTTACCAAAAATATCTCTTTTGAG 57.641 33.333 11.12 5.76 43.42 3.02
406 407 6.890663 TCTTTTGAGAGCAATTTTGTGTTG 57.109 33.333 0.00 0.00 33.25 3.33
407 408 6.629128 TCTTTTGAGAGCAATTTTGTGTTGA 58.371 32.000 0.00 0.00 33.25 3.18
408 409 7.095910 TCTTTTGAGAGCAATTTTGTGTTGAA 58.904 30.769 0.00 0.00 33.25 2.69
409 410 7.601886 TCTTTTGAGAGCAATTTTGTGTTGAAA 59.398 29.630 0.00 0.00 33.25 2.69
410 411 6.890663 TTGAGAGCAATTTTGTGTTGAAAG 57.109 33.333 0.00 0.00 0.00 2.62
411 412 5.350633 TGAGAGCAATTTTGTGTTGAAAGG 58.649 37.500 0.00 0.00 0.00 3.11
412 413 4.696455 AGAGCAATTTTGTGTTGAAAGGG 58.304 39.130 0.00 0.00 0.00 3.95
413 414 3.205338 AGCAATTTTGTGTTGAAAGGGC 58.795 40.909 0.00 0.00 0.00 5.19
414 415 2.941720 GCAATTTTGTGTTGAAAGGGCA 59.058 40.909 0.00 0.00 0.00 5.36
415 416 3.242706 GCAATTTTGTGTTGAAAGGGCAC 60.243 43.478 0.00 0.00 0.00 5.01
416 417 2.285827 TTTTGTGTTGAAAGGGCACG 57.714 45.000 0.00 0.00 36.04 5.34
417 418 1.178276 TTTGTGTTGAAAGGGCACGT 58.822 45.000 0.00 0.00 36.04 4.49
418 419 1.178276 TTGTGTTGAAAGGGCACGTT 58.822 45.000 0.00 0.00 38.43 3.99
420 421 1.546476 TGTGTTGAAAGGGCACGTTTT 59.454 42.857 0.00 0.00 46.89 2.43
421 422 1.923864 GTGTTGAAAGGGCACGTTTTG 59.076 47.619 0.00 0.00 46.89 2.44
422 423 1.819288 TGTTGAAAGGGCACGTTTTGA 59.181 42.857 0.00 0.00 46.89 2.69
423 424 2.159310 TGTTGAAAGGGCACGTTTTGAG 60.159 45.455 0.00 0.00 46.89 3.02
424 425 1.028905 TGAAAGGGCACGTTTTGAGG 58.971 50.000 0.00 0.00 46.89 3.86
425 426 0.313987 GAAAGGGCACGTTTTGAGGG 59.686 55.000 0.00 0.00 46.89 4.30
426 427 0.106419 AAAGGGCACGTTTTGAGGGA 60.106 50.000 0.00 0.00 44.45 4.20
427 428 0.112412 AAGGGCACGTTTTGAGGGAT 59.888 50.000 0.00 0.00 29.37 3.85
428 429 0.988832 AGGGCACGTTTTGAGGGATA 59.011 50.000 0.00 0.00 0.00 2.59
429 430 1.353022 AGGGCACGTTTTGAGGGATAA 59.647 47.619 0.00 0.00 0.00 1.75
430 431 1.471287 GGGCACGTTTTGAGGGATAAC 59.529 52.381 0.00 0.00 0.00 1.89
431 432 2.433436 GGCACGTTTTGAGGGATAACT 58.567 47.619 0.00 0.00 0.00 2.24
432 433 2.418976 GGCACGTTTTGAGGGATAACTC 59.581 50.000 0.00 0.00 37.99 3.01
433 434 2.418976 GCACGTTTTGAGGGATAACTCC 59.581 50.000 0.00 0.00 41.26 3.85
434 435 3.868754 GCACGTTTTGAGGGATAACTCCT 60.869 47.826 0.00 0.00 41.74 3.69
442 443 4.846168 GAGGGATAACTCCTCCAACTTT 57.154 45.455 0.00 0.00 43.71 2.66
443 444 5.180810 GAGGGATAACTCCTCCAACTTTT 57.819 43.478 0.00 0.00 43.71 2.27
444 445 4.923415 AGGGATAACTCCTCCAACTTTTG 58.077 43.478 0.00 0.00 41.74 2.44
445 446 4.354087 AGGGATAACTCCTCCAACTTTTGT 59.646 41.667 0.00 0.00 41.74 2.83
446 447 4.459337 GGGATAACTCCTCCAACTTTTGTG 59.541 45.833 0.00 0.00 41.74 3.33
447 448 5.313712 GGATAACTCCTCCAACTTTTGTGA 58.686 41.667 0.00 0.00 38.65 3.58
448 449 5.412904 GGATAACTCCTCCAACTTTTGTGAG 59.587 44.000 0.00 0.00 38.65 3.51
449 450 4.503714 AACTCCTCCAACTTTTGTGAGA 57.496 40.909 0.00 0.00 32.90 3.27
450 451 4.713792 ACTCCTCCAACTTTTGTGAGAT 57.286 40.909 0.00 0.00 32.90 2.75
451 452 5.053978 ACTCCTCCAACTTTTGTGAGATT 57.946 39.130 0.00 0.00 32.90 2.40
452 453 6.187727 ACTCCTCCAACTTTTGTGAGATTA 57.812 37.500 0.00 0.00 32.90 1.75
453 454 6.784031 ACTCCTCCAACTTTTGTGAGATTAT 58.216 36.000 0.00 0.00 32.90 1.28
454 455 7.918076 ACTCCTCCAACTTTTGTGAGATTATA 58.082 34.615 0.00 0.00 32.90 0.98
455 456 8.043710 ACTCCTCCAACTTTTGTGAGATTATAG 58.956 37.037 0.00 0.00 32.90 1.31
456 457 6.823689 TCCTCCAACTTTTGTGAGATTATAGC 59.176 38.462 6.17 0.00 32.90 2.97
457 458 6.825721 CCTCCAACTTTTGTGAGATTATAGCT 59.174 38.462 0.00 0.00 32.90 3.32
458 459 7.987458 CCTCCAACTTTTGTGAGATTATAGCTA 59.013 37.037 0.00 0.00 32.90 3.32
459 460 9.553064 CTCCAACTTTTGTGAGATTATAGCTAT 57.447 33.333 11.77 11.77 32.90 2.97
464 465 8.598041 ACTTTTGTGAGATTATAGCTATAGGGG 58.402 37.037 13.07 0.00 0.00 4.79
465 466 8.736097 TTTTGTGAGATTATAGCTATAGGGGA 57.264 34.615 13.07 0.00 0.00 4.81
466 467 8.736097 TTTGTGAGATTATAGCTATAGGGGAA 57.264 34.615 13.07 1.17 0.00 3.97
467 468 7.962995 TGTGAGATTATAGCTATAGGGGAAG 57.037 40.000 13.07 0.00 0.00 3.46
468 469 7.479579 TGTGAGATTATAGCTATAGGGGAAGT 58.520 38.462 13.07 0.00 0.00 3.01
469 470 7.956315 TGTGAGATTATAGCTATAGGGGAAGTT 59.044 37.037 13.07 0.00 0.00 2.66
470 471 8.471609 GTGAGATTATAGCTATAGGGGAAGTTC 58.528 40.741 13.07 0.00 0.00 3.01
471 472 8.402683 TGAGATTATAGCTATAGGGGAAGTTCT 58.597 37.037 13.07 2.13 0.00 3.01
472 473 9.924010 GAGATTATAGCTATAGGGGAAGTTCTA 57.076 37.037 13.07 0.00 0.00 2.10
473 474 9.930158 AGATTATAGCTATAGGGGAAGTTCTAG 57.070 37.037 13.07 0.00 0.00 2.43
474 475 7.957992 TTATAGCTATAGGGGAAGTTCTAGC 57.042 40.000 13.07 11.31 33.47 3.42
475 476 3.512496 AGCTATAGGGGAAGTTCTAGCC 58.488 50.000 14.28 3.45 33.70 3.93
476 477 3.116707 AGCTATAGGGGAAGTTCTAGCCA 60.117 47.826 14.28 0.00 33.70 4.75
477 478 3.007074 GCTATAGGGGAAGTTCTAGCCAC 59.993 52.174 2.25 0.00 0.00 5.01
478 479 2.634639 TAGGGGAAGTTCTAGCCACA 57.365 50.000 2.25 0.00 0.00 4.17
479 480 0.984995 AGGGGAAGTTCTAGCCACAC 59.015 55.000 2.25 0.00 0.00 3.82
480 481 0.035343 GGGGAAGTTCTAGCCACACC 60.035 60.000 2.25 0.00 0.00 4.16
481 482 0.690762 GGGAAGTTCTAGCCACACCA 59.309 55.000 2.25 0.00 0.00 4.17
482 483 1.282157 GGGAAGTTCTAGCCACACCAT 59.718 52.381 2.25 0.00 0.00 3.55
483 484 2.504175 GGGAAGTTCTAGCCACACCATA 59.496 50.000 2.25 0.00 0.00 2.74
484 485 3.136626 GGGAAGTTCTAGCCACACCATAT 59.863 47.826 2.25 0.00 0.00 1.78
485 486 4.385310 GGGAAGTTCTAGCCACACCATATT 60.385 45.833 2.25 0.00 0.00 1.28
486 487 5.193679 GGAAGTTCTAGCCACACCATATTT 58.806 41.667 2.25 0.00 0.00 1.40
487 488 5.652452 GGAAGTTCTAGCCACACCATATTTT 59.348 40.000 2.25 0.00 0.00 1.82
488 489 6.152831 GGAAGTTCTAGCCACACCATATTTTT 59.847 38.462 2.25 0.00 0.00 1.94
489 490 7.338449 GGAAGTTCTAGCCACACCATATTTTTA 59.662 37.037 2.25 0.00 0.00 1.52
490 491 8.823220 AAGTTCTAGCCACACCATATTTTTAT 57.177 30.769 0.00 0.00 0.00 1.40
491 492 8.823220 AGTTCTAGCCACACCATATTTTTATT 57.177 30.769 0.00 0.00 0.00 1.40
492 493 9.255029 AGTTCTAGCCACACCATATTTTTATTT 57.745 29.630 0.00 0.00 0.00 1.40
493 494 9.516314 GTTCTAGCCACACCATATTTTTATTTC 57.484 33.333 0.00 0.00 0.00 2.17
494 495 9.474313 TTCTAGCCACACCATATTTTTATTTCT 57.526 29.630 0.00 0.00 0.00 2.52
495 496 9.474313 TCTAGCCACACCATATTTTTATTTCTT 57.526 29.630 0.00 0.00 0.00 2.52
510 511 9.575783 TTTTTATTTCTTATATGTTTGCGACCC 57.424 29.630 0.00 0.00 0.00 4.46
511 512 8.514330 TTTATTTCTTATATGTTTGCGACCCT 57.486 30.769 0.00 0.00 0.00 4.34
512 513 9.616156 TTTATTTCTTATATGTTTGCGACCCTA 57.384 29.630 0.00 0.00 0.00 3.53
513 514 6.913873 TTTCTTATATGTTTGCGACCCTAC 57.086 37.500 0.00 0.00 0.00 3.18
514 515 5.864418 TCTTATATGTTTGCGACCCTACT 57.136 39.130 0.00 0.00 0.00 2.57
515 516 6.229936 TCTTATATGTTTGCGACCCTACTT 57.770 37.500 0.00 0.00 0.00 2.24
516 517 6.646267 TCTTATATGTTTGCGACCCTACTTT 58.354 36.000 0.00 0.00 0.00 2.66
517 518 6.537301 TCTTATATGTTTGCGACCCTACTTTG 59.463 38.462 0.00 0.00 0.00 2.77
518 519 1.600023 TGTTTGCGACCCTACTTTGG 58.400 50.000 0.00 0.00 0.00 3.28
519 520 0.240145 GTTTGCGACCCTACTTTGGC 59.760 55.000 0.00 0.00 0.00 4.52
520 521 0.179015 TTTGCGACCCTACTTTGGCA 60.179 50.000 0.00 0.00 0.00 4.92
521 522 0.887387 TTGCGACCCTACTTTGGCAC 60.887 55.000 0.00 0.00 0.00 5.01
522 523 1.302192 GCGACCCTACTTTGGCACA 60.302 57.895 0.00 0.00 0.00 4.57
544 545 7.781324 ACAAGATCCATGTGATTTTTAACCT 57.219 32.000 1.19 0.00 32.41 3.50
545 546 8.877864 ACAAGATCCATGTGATTTTTAACCTA 57.122 30.769 1.19 0.00 32.41 3.08
546 547 8.739972 ACAAGATCCATGTGATTTTTAACCTAC 58.260 33.333 1.19 0.00 32.41 3.18
547 548 7.881775 AGATCCATGTGATTTTTAACCTACC 57.118 36.000 0.00 0.00 32.41 3.18
548 549 7.643123 AGATCCATGTGATTTTTAACCTACCT 58.357 34.615 0.00 0.00 32.41 3.08
549 550 7.775561 AGATCCATGTGATTTTTAACCTACCTC 59.224 37.037 0.00 0.00 32.41 3.85
550 551 6.184789 TCCATGTGATTTTTAACCTACCTCC 58.815 40.000 0.00 0.00 0.00 4.30
551 552 5.949354 CCATGTGATTTTTAACCTACCTCCA 59.051 40.000 0.00 0.00 0.00 3.86
552 553 6.127730 CCATGTGATTTTTAACCTACCTCCAC 60.128 42.308 0.00 0.00 0.00 4.02
553 554 4.998672 TGTGATTTTTAACCTACCTCCACG 59.001 41.667 0.00 0.00 0.00 4.94
554 555 4.999311 GTGATTTTTAACCTACCTCCACGT 59.001 41.667 0.00 0.00 0.00 4.49
555 556 6.165577 GTGATTTTTAACCTACCTCCACGTA 58.834 40.000 0.00 0.00 0.00 3.57
556 557 6.091305 GTGATTTTTAACCTACCTCCACGTAC 59.909 42.308 0.00 0.00 0.00 3.67
557 558 5.806654 TTTTTAACCTACCTCCACGTACT 57.193 39.130 0.00 0.00 0.00 2.73
558 559 6.909550 TTTTTAACCTACCTCCACGTACTA 57.090 37.500 0.00 0.00 0.00 1.82
559 560 6.909550 TTTTAACCTACCTCCACGTACTAA 57.090 37.500 0.00 0.00 0.00 2.24
560 561 7.480760 TTTTAACCTACCTCCACGTACTAAT 57.519 36.000 0.00 0.00 0.00 1.73
561 562 8.588290 TTTTAACCTACCTCCACGTACTAATA 57.412 34.615 0.00 0.00 0.00 0.98
562 563 8.766994 TTTAACCTACCTCCACGTACTAATAT 57.233 34.615 0.00 0.00 0.00 1.28
563 564 9.860650 TTTAACCTACCTCCACGTACTAATATA 57.139 33.333 0.00 0.00 0.00 0.86
564 565 7.992754 AACCTACCTCCACGTACTAATATAG 57.007 40.000 0.00 0.00 0.00 1.31
691 693 1.412710 TCTGTGAACTTTGGCGTCTCT 59.587 47.619 0.00 0.00 0.00 3.10
845 848 1.347320 GCTATATAAGCGGGCGACAC 58.653 55.000 0.00 0.00 42.53 3.67
1063 1070 2.434884 CGCGTGTGGAGATGCCTT 60.435 61.111 0.00 0.00 37.63 4.35
1071 1078 2.224523 TGTGGAGATGCCTTTCTTCGTT 60.225 45.455 0.00 0.00 37.63 3.85
1085 1092 2.871216 TTCGTTTGTCCGTGGTGCCA 62.871 55.000 0.00 0.00 0.00 4.92
1204 1211 1.665679 CATTTTCGTGGTCGGGATCTG 59.334 52.381 0.00 0.00 37.69 2.90
1237 1244 3.401033 TGATCTGTTCCGTGTTCATGT 57.599 42.857 0.00 0.00 0.00 3.21
1468 1477 7.615582 CTTGAAGATCAAGCACTACCAATAA 57.384 36.000 7.13 0.00 46.03 1.40
1530 1539 3.002862 TCGCACTGGTTGTAATGTTGAAC 59.997 43.478 0.00 0.00 0.00 3.18
1613 1622 7.504924 TCACCTAGTTTAAATGTTGGTCAAG 57.495 36.000 0.00 0.00 0.00 3.02
1713 1732 7.115236 TCAGAAACTTTTGATCAATGAAATGCG 59.885 33.333 9.40 0.00 0.00 4.73
1749 1768 4.079253 TCCAGAGCCAAACAATTAAGGTC 58.921 43.478 0.00 0.00 0.00 3.85
1856 1875 2.557924 TGTCATGGAAAATGTGCCTCAC 59.442 45.455 0.00 0.00 34.56 3.51
1987 2007 1.729267 AATGGTGTGGCTGGGGACTT 61.729 55.000 0.00 0.00 0.00 3.01
2080 2100 0.919710 ACATGGGTAGGGAAGGAAGC 59.080 55.000 0.00 0.00 0.00 3.86
2350 2387 2.610859 GGCTTCTCACCCCCTCCA 60.611 66.667 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.495001 GGGGATTTTCGATCTTCGTCATC 59.505 47.826 0.00 0.00 41.35 2.92
3 4 2.158943 AGGGGGATTTTCGATCTTCGTC 60.159 50.000 0.00 0.00 41.35 4.20
5 6 2.103263 AGAGGGGGATTTTCGATCTTCG 59.897 50.000 0.00 0.00 42.10 3.79
6 7 3.389656 AGAGAGGGGGATTTTCGATCTTC 59.610 47.826 0.00 0.00 0.00 2.87
7 8 3.135530 CAGAGAGGGGGATTTTCGATCTT 59.864 47.826 0.00 0.00 0.00 2.40
9 10 2.224402 CCAGAGAGGGGGATTTTCGATC 60.224 54.545 0.00 0.00 0.00 3.69
10 11 1.771255 CCAGAGAGGGGGATTTTCGAT 59.229 52.381 0.00 0.00 0.00 3.59
12 13 1.139853 CTCCAGAGAGGGGGATTTTCG 59.860 57.143 0.00 0.00 36.39 3.46
13 14 1.133945 GCTCCAGAGAGGGGGATTTTC 60.134 57.143 0.00 0.00 38.82 2.29
14 15 0.922626 GCTCCAGAGAGGGGGATTTT 59.077 55.000 0.00 0.00 38.82 1.82
15 16 0.990818 GGCTCCAGAGAGGGGGATTT 60.991 60.000 0.00 0.00 38.82 2.17
16 17 1.385206 GGCTCCAGAGAGGGGGATT 60.385 63.158 0.00 0.00 38.82 3.01
17 18 2.288643 GGCTCCAGAGAGGGGGAT 59.711 66.667 0.00 0.00 38.82 3.85
18 19 4.095400 GGGCTCCAGAGAGGGGGA 62.095 72.222 0.00 0.00 38.82 4.81
21 22 3.984186 TTCGGGGCTCCAGAGAGGG 62.984 68.421 1.96 0.00 40.79 4.30
22 23 2.364317 TTCGGGGCTCCAGAGAGG 60.364 66.667 1.96 0.00 40.79 3.69
23 24 2.896443 GTTCGGGGCTCCAGAGAG 59.104 66.667 1.96 0.00 43.57 3.20
24 25 3.068691 CGTTCGGGGCTCCAGAGA 61.069 66.667 1.96 0.00 0.00 3.10
25 26 4.148825 CCGTTCGGGGCTCCAGAG 62.149 72.222 1.96 0.00 0.00 3.35
26 27 4.689549 TCCGTTCGGGGCTCCAGA 62.690 66.667 1.96 0.00 36.01 3.86
27 28 4.452733 GTCCGTTCGGGGCTCCAG 62.453 72.222 1.96 0.00 37.47 3.86
32 33 1.108132 ATCTAGAGTCCGTTCGGGGC 61.108 60.000 11.37 5.21 42.41 5.80
33 34 0.953003 GATCTAGAGTCCGTTCGGGG 59.047 60.000 11.37 0.00 36.01 5.73
34 35 1.604755 CAGATCTAGAGTCCGTTCGGG 59.395 57.143 11.37 0.00 37.02 5.14
35 36 1.604755 CCAGATCTAGAGTCCGTTCGG 59.395 57.143 4.74 4.74 0.00 4.30
36 37 1.002251 GCCAGATCTAGAGTCCGTTCG 60.002 57.143 0.00 0.00 0.00 3.95
37 38 1.338655 GGCCAGATCTAGAGTCCGTTC 59.661 57.143 0.00 0.00 0.00 3.95
38 39 1.063567 AGGCCAGATCTAGAGTCCGTT 60.064 52.381 5.01 0.00 0.00 4.44
39 40 0.553819 AGGCCAGATCTAGAGTCCGT 59.446 55.000 5.01 0.00 0.00 4.69
40 41 1.243902 GAGGCCAGATCTAGAGTCCG 58.756 60.000 5.01 0.00 0.00 4.79
41 42 1.627864 GGAGGCCAGATCTAGAGTCC 58.372 60.000 5.01 0.00 0.00 3.85
42 43 1.202830 TCGGAGGCCAGATCTAGAGTC 60.203 57.143 5.01 0.00 0.00 3.36
43 44 0.847373 TCGGAGGCCAGATCTAGAGT 59.153 55.000 5.01 0.00 0.00 3.24
44 45 1.818060 CATCGGAGGCCAGATCTAGAG 59.182 57.143 5.01 0.00 0.00 2.43
45 46 1.425448 TCATCGGAGGCCAGATCTAGA 59.575 52.381 5.01 0.00 0.00 2.43
46 47 1.916506 TCATCGGAGGCCAGATCTAG 58.083 55.000 5.01 0.00 0.00 2.43
47 48 2.158460 TCTTCATCGGAGGCCAGATCTA 60.158 50.000 5.01 0.00 0.00 1.98
48 49 1.047002 CTTCATCGGAGGCCAGATCT 58.953 55.000 5.01 0.00 0.00 2.75
49 50 1.043816 TCTTCATCGGAGGCCAGATC 58.956 55.000 5.01 0.00 0.00 2.75
50 51 1.139853 GTTCTTCATCGGAGGCCAGAT 59.860 52.381 5.01 3.75 0.00 2.90
51 52 0.537188 GTTCTTCATCGGAGGCCAGA 59.463 55.000 5.01 0.87 0.00 3.86
52 53 0.250234 TGTTCTTCATCGGAGGCCAG 59.750 55.000 5.01 0.00 0.00 4.85
53 54 0.250234 CTGTTCTTCATCGGAGGCCA 59.750 55.000 5.01 0.00 0.00 5.36
54 55 0.462759 CCTGTTCTTCATCGGAGGCC 60.463 60.000 0.00 0.00 0.00 5.19
55 56 0.537188 TCCTGTTCTTCATCGGAGGC 59.463 55.000 0.00 0.00 0.00 4.70
56 57 2.103373 TCTCCTGTTCTTCATCGGAGG 58.897 52.381 0.00 0.00 38.37 4.30
57 58 2.478709 CGTCTCCTGTTCTTCATCGGAG 60.479 54.545 0.00 0.00 38.85 4.63
58 59 1.472878 CGTCTCCTGTTCTTCATCGGA 59.527 52.381 0.00 0.00 0.00 4.55
59 60 1.469940 CCGTCTCCTGTTCTTCATCGG 60.470 57.143 0.00 0.00 0.00 4.18
60 61 1.202582 ACCGTCTCCTGTTCTTCATCG 59.797 52.381 0.00 0.00 0.00 3.84
61 62 2.611518 CACCGTCTCCTGTTCTTCATC 58.388 52.381 0.00 0.00 0.00 2.92
62 63 1.276421 CCACCGTCTCCTGTTCTTCAT 59.724 52.381 0.00 0.00 0.00 2.57
63 64 0.679505 CCACCGTCTCCTGTTCTTCA 59.320 55.000 0.00 0.00 0.00 3.02
64 65 0.670854 GCCACCGTCTCCTGTTCTTC 60.671 60.000 0.00 0.00 0.00 2.87
65 66 1.371558 GCCACCGTCTCCTGTTCTT 59.628 57.895 0.00 0.00 0.00 2.52
66 67 1.821061 CTGCCACCGTCTCCTGTTCT 61.821 60.000 0.00 0.00 0.00 3.01
67 68 1.374758 CTGCCACCGTCTCCTGTTC 60.375 63.158 0.00 0.00 0.00 3.18
68 69 2.743718 CTGCCACCGTCTCCTGTT 59.256 61.111 0.00 0.00 0.00 3.16
69 70 4.008933 GCTGCCACCGTCTCCTGT 62.009 66.667 0.00 0.00 0.00 4.00
70 71 3.655810 GAGCTGCCACCGTCTCCTG 62.656 68.421 0.00 0.00 0.00 3.86
71 72 3.386237 GAGCTGCCACCGTCTCCT 61.386 66.667 0.00 0.00 0.00 3.69
72 73 4.459089 GGAGCTGCCACCGTCTCC 62.459 72.222 0.00 0.00 38.40 3.71
73 74 4.803426 CGGAGCTGCCACCGTCTC 62.803 72.222 21.79 1.61 43.53 3.36
78 79 4.803426 CGAGACGGAGCTGCCACC 62.803 72.222 0.00 0.00 35.94 4.61
79 80 4.057428 ACGAGACGGAGCTGCCAC 62.057 66.667 0.00 0.00 35.94 5.01
80 81 4.056125 CACGAGACGGAGCTGCCA 62.056 66.667 0.00 0.00 35.94 4.92
81 82 2.765250 TTTCACGAGACGGAGCTGCC 62.765 60.000 0.00 0.00 0.00 4.85
82 83 1.372997 TTTCACGAGACGGAGCTGC 60.373 57.895 0.00 0.00 0.00 5.25
83 84 1.337817 CGTTTCACGAGACGGAGCTG 61.338 60.000 0.00 0.00 46.05 4.24
84 85 1.081376 CGTTTCACGAGACGGAGCT 60.081 57.895 2.40 0.00 46.05 4.09
85 86 2.717809 GCGTTTCACGAGACGGAGC 61.718 63.158 11.47 0.00 46.05 4.70
86 87 2.426183 CGCGTTTCACGAGACGGAG 61.426 63.158 11.47 0.00 46.05 4.63
87 88 2.427905 CGCGTTTCACGAGACGGA 60.428 61.111 11.47 0.00 46.05 4.69
88 89 2.427905 TCGCGTTTCACGAGACGG 60.428 61.111 5.77 3.10 44.93 4.79
92 93 4.500703 AAGAATTATCGCGTTTCACGAG 57.499 40.909 5.77 0.00 46.05 4.18
93 94 4.624024 AGAAAGAATTATCGCGTTTCACGA 59.376 37.500 15.54 0.00 46.05 4.35
94 95 4.882447 AGAAAGAATTATCGCGTTTCACG 58.118 39.130 15.54 0.00 45.88 4.35
95 96 6.095947 AGAGAAAGAATTATCGCGTTTCAC 57.904 37.500 15.54 10.67 32.02 3.18
96 97 5.004440 CGAGAGAAAGAATTATCGCGTTTCA 59.996 40.000 15.54 0.00 42.53 2.69
97 98 5.229469 TCGAGAGAAAGAATTATCGCGTTTC 59.771 40.000 5.77 7.01 45.91 2.78
98 99 5.100259 TCGAGAGAAAGAATTATCGCGTTT 58.900 37.500 5.77 0.00 45.91 3.60
99 100 4.669318 TCGAGAGAAAGAATTATCGCGTT 58.331 39.130 5.77 0.00 45.91 4.84
100 101 4.288670 TCGAGAGAAAGAATTATCGCGT 57.711 40.909 5.77 0.00 45.91 6.01
101 102 5.814314 AATCGAGAGAAAGAATTATCGCG 57.186 39.130 0.00 0.00 46.74 5.87
126 127 9.337396 ACGCTATAAAATCACATTATTCCAGAA 57.663 29.630 0.00 0.00 0.00 3.02
127 128 8.902540 ACGCTATAAAATCACATTATTCCAGA 57.097 30.769 0.00 0.00 0.00 3.86
128 129 7.952101 CGACGCTATAAAATCACATTATTCCAG 59.048 37.037 0.00 0.00 0.00 3.86
129 130 7.095397 CCGACGCTATAAAATCACATTATTCCA 60.095 37.037 0.00 0.00 0.00 3.53
130 131 7.095355 ACCGACGCTATAAAATCACATTATTCC 60.095 37.037 0.00 0.00 0.00 3.01
131 132 7.793902 ACCGACGCTATAAAATCACATTATTC 58.206 34.615 0.00 0.00 0.00 1.75
132 133 7.724305 ACCGACGCTATAAAATCACATTATT 57.276 32.000 0.00 0.00 0.00 1.40
133 134 7.724305 AACCGACGCTATAAAATCACATTAT 57.276 32.000 0.00 0.00 0.00 1.28
134 135 7.278203 TGAAACCGACGCTATAAAATCACATTA 59.722 33.333 0.00 0.00 0.00 1.90
135 136 6.092944 TGAAACCGACGCTATAAAATCACATT 59.907 34.615 0.00 0.00 0.00 2.71
136 137 5.583061 TGAAACCGACGCTATAAAATCACAT 59.417 36.000 0.00 0.00 0.00 3.21
137 138 4.930405 TGAAACCGACGCTATAAAATCACA 59.070 37.500 0.00 0.00 0.00 3.58
138 139 5.459110 TGAAACCGACGCTATAAAATCAC 57.541 39.130 0.00 0.00 0.00 3.06
139 140 4.569162 CCTGAAACCGACGCTATAAAATCA 59.431 41.667 0.00 0.00 0.00 2.57
140 141 4.025145 CCCTGAAACCGACGCTATAAAATC 60.025 45.833 0.00 0.00 0.00 2.17
141 142 3.875134 CCCTGAAACCGACGCTATAAAAT 59.125 43.478 0.00 0.00 0.00 1.82
142 143 3.264104 CCCTGAAACCGACGCTATAAAA 58.736 45.455 0.00 0.00 0.00 1.52
143 144 2.234414 ACCCTGAAACCGACGCTATAAA 59.766 45.455 0.00 0.00 0.00 1.40
144 145 1.826720 ACCCTGAAACCGACGCTATAA 59.173 47.619 0.00 0.00 0.00 0.98
145 146 1.406539 GACCCTGAAACCGACGCTATA 59.593 52.381 0.00 0.00 0.00 1.31
146 147 0.175073 GACCCTGAAACCGACGCTAT 59.825 55.000 0.00 0.00 0.00 2.97
147 148 1.180456 TGACCCTGAAACCGACGCTA 61.180 55.000 0.00 0.00 0.00 4.26
148 149 2.035237 TTGACCCTGAAACCGACGCT 62.035 55.000 0.00 0.00 0.00 5.07
149 150 1.595929 TTGACCCTGAAACCGACGC 60.596 57.895 0.00 0.00 0.00 5.19
150 151 1.554042 CGTTGACCCTGAAACCGACG 61.554 60.000 0.00 0.00 0.00 5.12
151 152 1.226030 CCGTTGACCCTGAAACCGAC 61.226 60.000 0.00 0.00 0.00 4.79
152 153 1.070105 CCGTTGACCCTGAAACCGA 59.930 57.895 0.00 0.00 0.00 4.69
153 154 1.964373 CCCGTTGACCCTGAAACCG 60.964 63.158 0.00 0.00 0.00 4.44
154 155 1.602605 CCCCGTTGACCCTGAAACC 60.603 63.158 0.00 0.00 0.00 3.27
155 156 2.265904 GCCCCGTTGACCCTGAAAC 61.266 63.158 0.00 0.00 0.00 2.78
156 157 2.114411 GCCCCGTTGACCCTGAAA 59.886 61.111 0.00 0.00 0.00 2.69
157 158 3.961414 GGCCCCGTTGACCCTGAA 61.961 66.667 0.00 0.00 0.00 3.02
174 175 2.115266 GGTTGTCCCCACCTGGTG 59.885 66.667 20.01 20.01 0.00 4.17
192 193 1.455587 AGTTTGTGCCCACCTGGTG 60.456 57.895 20.01 20.01 36.04 4.17
193 194 1.455587 CAGTTTGTGCCCACCTGGT 60.456 57.895 0.00 0.00 36.04 4.00
194 195 3.447040 CAGTTTGTGCCCACCTGG 58.553 61.111 0.00 0.00 37.09 4.45
203 204 2.563976 CAATTCGAGTCGCAGTTTGTG 58.436 47.619 7.92 0.00 0.00 3.33
204 205 1.069906 GCAATTCGAGTCGCAGTTTGT 60.070 47.619 7.92 0.00 0.00 2.83
205 206 1.069973 TGCAATTCGAGTCGCAGTTTG 60.070 47.619 7.92 9.48 0.00 2.93
206 207 1.225855 TGCAATTCGAGTCGCAGTTT 58.774 45.000 7.92 0.00 0.00 2.66
207 208 1.442769 ATGCAATTCGAGTCGCAGTT 58.557 45.000 7.92 0.00 37.88 3.16
208 209 1.129251 CAATGCAATTCGAGTCGCAGT 59.871 47.619 7.92 0.00 37.88 4.40
209 210 1.394572 TCAATGCAATTCGAGTCGCAG 59.605 47.619 7.92 0.00 37.88 5.18
210 211 1.437625 TCAATGCAATTCGAGTCGCA 58.562 45.000 7.92 0.00 31.22 5.10
211 212 2.744787 ATCAATGCAATTCGAGTCGC 57.255 45.000 7.92 0.00 31.22 5.19
212 213 5.674148 CACTAAATCAATGCAATTCGAGTCG 59.326 40.000 6.09 6.09 31.22 4.18
213 214 5.967674 CCACTAAATCAATGCAATTCGAGTC 59.032 40.000 0.00 0.00 31.22 3.36
214 215 5.163622 CCCACTAAATCAATGCAATTCGAGT 60.164 40.000 0.00 0.00 31.22 4.18
215 216 5.066375 TCCCACTAAATCAATGCAATTCGAG 59.934 40.000 0.00 0.00 31.22 4.04
216 217 4.946772 TCCCACTAAATCAATGCAATTCGA 59.053 37.500 0.00 0.00 31.22 3.71
217 218 5.247507 TCCCACTAAATCAATGCAATTCG 57.752 39.130 0.00 0.00 31.22 3.34
218 219 7.816031 CCATATCCCACTAAATCAATGCAATTC 59.184 37.037 0.00 0.00 31.22 2.17
219 220 7.256404 CCCATATCCCACTAAATCAATGCAATT 60.256 37.037 0.00 0.00 36.63 2.32
220 221 6.211986 CCCATATCCCACTAAATCAATGCAAT 59.788 38.462 0.00 0.00 0.00 3.56
221 222 5.539574 CCCATATCCCACTAAATCAATGCAA 59.460 40.000 0.00 0.00 0.00 4.08
222 223 5.078949 CCCATATCCCACTAAATCAATGCA 58.921 41.667 0.00 0.00 0.00 3.96
223 224 5.324409 TCCCATATCCCACTAAATCAATGC 58.676 41.667 0.00 0.00 0.00 3.56
224 225 5.948162 CCTCCCATATCCCACTAAATCAATG 59.052 44.000 0.00 0.00 0.00 2.82
225 226 5.517299 GCCTCCCATATCCCACTAAATCAAT 60.517 44.000 0.00 0.00 0.00 2.57
226 227 4.202567 GCCTCCCATATCCCACTAAATCAA 60.203 45.833 0.00 0.00 0.00 2.57
227 228 3.330701 GCCTCCCATATCCCACTAAATCA 59.669 47.826 0.00 0.00 0.00 2.57
228 229 3.308473 GGCCTCCCATATCCCACTAAATC 60.308 52.174 0.00 0.00 0.00 2.17
229 230 2.649816 GGCCTCCCATATCCCACTAAAT 59.350 50.000 0.00 0.00 0.00 1.40
230 231 2.062636 GGCCTCCCATATCCCACTAAA 58.937 52.381 0.00 0.00 0.00 1.85
231 232 1.060954 TGGCCTCCCATATCCCACTAA 60.061 52.381 3.32 0.00 35.79 2.24
232 233 0.570727 TGGCCTCCCATATCCCACTA 59.429 55.000 3.32 0.00 35.79 2.74
233 234 1.321584 TGGCCTCCCATATCCCACT 59.678 57.895 3.32 0.00 35.79 4.00
234 235 4.002006 TGGCCTCCCATATCCCAC 57.998 61.111 3.32 0.00 35.79 4.61
243 244 0.398318 GACCTACATCATGGCCTCCC 59.602 60.000 3.32 0.00 0.00 4.30
244 245 1.071385 CTGACCTACATCATGGCCTCC 59.929 57.143 3.32 0.00 0.00 4.30
245 246 1.071385 CCTGACCTACATCATGGCCTC 59.929 57.143 3.32 0.00 0.00 4.70
246 247 1.135094 CCTGACCTACATCATGGCCT 58.865 55.000 3.32 0.00 0.00 5.19
247 248 0.109342 CCCTGACCTACATCATGGCC 59.891 60.000 0.00 0.00 29.11 5.36
248 249 0.839946 ACCCTGACCTACATCATGGC 59.160 55.000 0.00 0.00 37.78 4.40
249 250 3.282021 CAAACCCTGACCTACATCATGG 58.718 50.000 0.00 0.00 39.56 3.66
250 251 3.054434 TCCAAACCCTGACCTACATCATG 60.054 47.826 0.00 0.00 0.00 3.07
251 252 3.189606 TCCAAACCCTGACCTACATCAT 58.810 45.455 0.00 0.00 0.00 2.45
252 253 2.571653 CTCCAAACCCTGACCTACATCA 59.428 50.000 0.00 0.00 0.00 3.07
253 254 2.838202 TCTCCAAACCCTGACCTACATC 59.162 50.000 0.00 0.00 0.00 3.06
254 255 2.915869 TCTCCAAACCCTGACCTACAT 58.084 47.619 0.00 0.00 0.00 2.29
255 256 2.409064 TCTCCAAACCCTGACCTACA 57.591 50.000 0.00 0.00 0.00 2.74
256 257 2.838202 TCATCTCCAAACCCTGACCTAC 59.162 50.000 0.00 0.00 0.00 3.18
257 258 3.107601 CTCATCTCCAAACCCTGACCTA 58.892 50.000 0.00 0.00 0.00 3.08
258 259 1.912043 CTCATCTCCAAACCCTGACCT 59.088 52.381 0.00 0.00 0.00 3.85
259 260 1.630878 ACTCATCTCCAAACCCTGACC 59.369 52.381 0.00 0.00 0.00 4.02
260 261 3.077359 CAACTCATCTCCAAACCCTGAC 58.923 50.000 0.00 0.00 0.00 3.51
261 262 2.040278 CCAACTCATCTCCAAACCCTGA 59.960 50.000 0.00 0.00 0.00 3.86
262 263 2.440409 CCAACTCATCTCCAAACCCTG 58.560 52.381 0.00 0.00 0.00 4.45
263 264 1.272147 GCCAACTCATCTCCAAACCCT 60.272 52.381 0.00 0.00 0.00 4.34
264 265 1.177401 GCCAACTCATCTCCAAACCC 58.823 55.000 0.00 0.00 0.00 4.11
265 266 1.815003 CTGCCAACTCATCTCCAAACC 59.185 52.381 0.00 0.00 0.00 3.27
266 267 1.815003 CCTGCCAACTCATCTCCAAAC 59.185 52.381 0.00 0.00 0.00 2.93
267 268 1.272092 CCCTGCCAACTCATCTCCAAA 60.272 52.381 0.00 0.00 0.00 3.28
268 269 0.329261 CCCTGCCAACTCATCTCCAA 59.671 55.000 0.00 0.00 0.00 3.53
269 270 0.547471 TCCCTGCCAACTCATCTCCA 60.547 55.000 0.00 0.00 0.00 3.86
270 271 0.842635 ATCCCTGCCAACTCATCTCC 59.157 55.000 0.00 0.00 0.00 3.71
271 272 2.725221 AATCCCTGCCAACTCATCTC 57.275 50.000 0.00 0.00 0.00 2.75
272 273 4.803329 ATAAATCCCTGCCAACTCATCT 57.197 40.909 0.00 0.00 0.00 2.90
273 274 4.457257 GCTATAAATCCCTGCCAACTCATC 59.543 45.833 0.00 0.00 0.00 2.92
274 275 4.401925 GCTATAAATCCCTGCCAACTCAT 58.598 43.478 0.00 0.00 0.00 2.90
275 276 3.744214 CGCTATAAATCCCTGCCAACTCA 60.744 47.826 0.00 0.00 0.00 3.41
276 277 2.808543 CGCTATAAATCCCTGCCAACTC 59.191 50.000 0.00 0.00 0.00 3.01
277 278 2.487265 CCGCTATAAATCCCTGCCAACT 60.487 50.000 0.00 0.00 0.00 3.16
278 279 1.880027 CCGCTATAAATCCCTGCCAAC 59.120 52.381 0.00 0.00 0.00 3.77
279 280 1.817740 GCCGCTATAAATCCCTGCCAA 60.818 52.381 0.00 0.00 0.00 4.52
280 281 0.250727 GCCGCTATAAATCCCTGCCA 60.251 55.000 0.00 0.00 0.00 4.92
281 282 0.250727 TGCCGCTATAAATCCCTGCC 60.251 55.000 0.00 0.00 0.00 4.85
282 283 1.826385 ATGCCGCTATAAATCCCTGC 58.174 50.000 0.00 0.00 0.00 4.85
283 284 3.535561 CCTATGCCGCTATAAATCCCTG 58.464 50.000 0.00 0.00 0.00 4.45
284 285 2.505819 CCCTATGCCGCTATAAATCCCT 59.494 50.000 0.00 0.00 0.00 4.20
285 286 2.421529 CCCCTATGCCGCTATAAATCCC 60.422 54.545 0.00 0.00 0.00 3.85
286 287 2.919228 CCCCTATGCCGCTATAAATCC 58.081 52.381 0.00 0.00 0.00 3.01
287 288 2.289565 GCCCCTATGCCGCTATAAATC 58.710 52.381 0.00 0.00 0.00 2.17
288 289 1.406887 CGCCCCTATGCCGCTATAAAT 60.407 52.381 0.00 0.00 0.00 1.40
289 290 0.036765 CGCCCCTATGCCGCTATAAA 60.037 55.000 0.00 0.00 0.00 1.40
290 291 0.901114 TCGCCCCTATGCCGCTATAA 60.901 55.000 0.00 0.00 0.00 0.98
291 292 0.901114 TTCGCCCCTATGCCGCTATA 60.901 55.000 0.00 0.00 0.00 1.31
292 293 2.214216 TTCGCCCCTATGCCGCTAT 61.214 57.895 0.00 0.00 0.00 2.97
293 294 2.840572 TTCGCCCCTATGCCGCTA 60.841 61.111 0.00 0.00 0.00 4.26
294 295 4.547367 GTTCGCCCCTATGCCGCT 62.547 66.667 0.00 0.00 0.00 5.52
295 296 4.547367 AGTTCGCCCCTATGCCGC 62.547 66.667 0.00 0.00 0.00 6.53
296 297 2.588877 CAGTTCGCCCCTATGCCG 60.589 66.667 0.00 0.00 0.00 5.69
297 298 1.227674 CTCAGTTCGCCCCTATGCC 60.228 63.158 0.00 0.00 0.00 4.40
298 299 1.889573 GCTCAGTTCGCCCCTATGC 60.890 63.158 0.00 0.00 0.00 3.14
299 300 0.249657 GAGCTCAGTTCGCCCCTATG 60.250 60.000 9.40 0.00 0.00 2.23
300 301 0.397816 AGAGCTCAGTTCGCCCCTAT 60.398 55.000 17.77 0.00 0.00 2.57
301 302 1.000486 AGAGCTCAGTTCGCCCCTA 60.000 57.895 17.77 0.00 0.00 3.53
302 303 2.284258 AGAGCTCAGTTCGCCCCT 60.284 61.111 17.77 0.00 0.00 4.79
303 304 2.125350 CAGAGCTCAGTTCGCCCC 60.125 66.667 17.77 0.00 0.00 5.80
304 305 2.125350 CCAGAGCTCAGTTCGCCC 60.125 66.667 17.77 0.00 0.00 6.13
305 306 2.125350 CCCAGAGCTCAGTTCGCC 60.125 66.667 17.77 0.00 0.00 5.54
306 307 2.817396 GCCCAGAGCTCAGTTCGC 60.817 66.667 17.77 6.02 38.99 4.70
307 308 2.125350 GGCCCAGAGCTCAGTTCG 60.125 66.667 17.77 0.00 43.05 3.95
308 309 1.965754 ATCGGCCCAGAGCTCAGTTC 61.966 60.000 17.77 1.96 43.05 3.01
309 310 1.992277 ATCGGCCCAGAGCTCAGTT 60.992 57.895 17.77 0.00 43.05 3.16
310 311 2.364842 ATCGGCCCAGAGCTCAGT 60.365 61.111 17.77 0.00 43.05 3.41
311 312 2.108566 CATCGGCCCAGAGCTCAG 59.891 66.667 17.77 8.01 43.05 3.35
312 313 3.473647 CCATCGGCCCAGAGCTCA 61.474 66.667 17.77 0.00 43.05 4.26
313 314 4.925861 GCCATCGGCCCAGAGCTC 62.926 72.222 5.27 5.27 44.06 4.09
325 326 7.157347 TCTCTTGTATTCATGATGTAGCCATC 58.843 38.462 0.00 0.00 46.41 3.51
326 327 7.071069 TCTCTTGTATTCATGATGTAGCCAT 57.929 36.000 0.00 0.00 0.00 4.40
327 328 6.463472 CCTCTCTTGTATTCATGATGTAGCCA 60.463 42.308 0.00 0.00 0.00 4.75
328 329 5.931146 CCTCTCTTGTATTCATGATGTAGCC 59.069 44.000 0.00 0.00 0.00 3.93
329 330 5.931146 CCCTCTCTTGTATTCATGATGTAGC 59.069 44.000 0.00 0.00 0.00 3.58
330 331 6.462500 CCCCTCTCTTGTATTCATGATGTAG 58.538 44.000 0.00 0.00 0.00 2.74
331 332 5.221722 GCCCCTCTCTTGTATTCATGATGTA 60.222 44.000 0.00 0.00 0.00 2.29
332 333 4.445448 GCCCCTCTCTTGTATTCATGATGT 60.445 45.833 0.00 0.00 0.00 3.06
333 334 4.070716 GCCCCTCTCTTGTATTCATGATG 58.929 47.826 0.00 0.00 0.00 3.07
334 335 3.244353 CGCCCCTCTCTTGTATTCATGAT 60.244 47.826 0.00 0.00 0.00 2.45
335 336 2.103094 CGCCCCTCTCTTGTATTCATGA 59.897 50.000 0.00 0.00 0.00 3.07
336 337 2.487934 CGCCCCTCTCTTGTATTCATG 58.512 52.381 0.00 0.00 0.00 3.07
337 338 1.417890 CCGCCCCTCTCTTGTATTCAT 59.582 52.381 0.00 0.00 0.00 2.57
338 339 0.830648 CCGCCCCTCTCTTGTATTCA 59.169 55.000 0.00 0.00 0.00 2.57
339 340 1.069358 CTCCGCCCCTCTCTTGTATTC 59.931 57.143 0.00 0.00 0.00 1.75
340 341 1.123928 CTCCGCCCCTCTCTTGTATT 58.876 55.000 0.00 0.00 0.00 1.89
341 342 0.261991 TCTCCGCCCCTCTCTTGTAT 59.738 55.000 0.00 0.00 0.00 2.29
342 343 0.395862 CTCTCCGCCCCTCTCTTGTA 60.396 60.000 0.00 0.00 0.00 2.41
343 344 1.684049 CTCTCCGCCCCTCTCTTGT 60.684 63.158 0.00 0.00 0.00 3.16
344 345 3.087666 GCTCTCCGCCCCTCTCTTG 62.088 68.421 0.00 0.00 0.00 3.02
345 346 2.762043 GCTCTCCGCCCCTCTCTT 60.762 66.667 0.00 0.00 0.00 2.85
346 347 3.731766 GAGCTCTCCGCCCCTCTCT 62.732 68.421 6.43 0.00 40.39 3.10
347 348 3.223589 GAGCTCTCCGCCCCTCTC 61.224 72.222 6.43 0.00 40.39 3.20
353 354 3.077519 TAAAGCCGAGCTCTCCGCC 62.078 63.158 12.85 0.00 38.25 6.13
354 355 1.878975 GTAAAGCCGAGCTCTCCGC 60.879 63.158 12.85 10.48 38.25 5.54
355 356 1.227002 GGTAAAGCCGAGCTCTCCG 60.227 63.158 12.85 0.00 38.25 4.63
356 357 0.249398 TTGGTAAAGCCGAGCTCTCC 59.751 55.000 12.85 2.08 38.25 3.71
357 358 2.094762 TTTGGTAAAGCCGAGCTCTC 57.905 50.000 12.85 3.35 38.25 3.20
358 359 2.561478 TTTTGGTAAAGCCGAGCTCT 57.439 45.000 12.85 0.00 38.25 4.09
359 360 3.850122 ATTTTTGGTAAAGCCGAGCTC 57.150 42.857 2.73 2.73 38.25 4.09
360 361 5.193679 AGATATTTTTGGTAAAGCCGAGCT 58.806 37.500 0.00 0.00 42.56 4.09
361 362 5.297029 AGAGATATTTTTGGTAAAGCCGAGC 59.703 40.000 0.00 0.00 41.21 5.03
362 363 6.927294 AGAGATATTTTTGGTAAAGCCGAG 57.073 37.500 0.00 0.00 41.21 4.63
363 364 7.696992 AAAGAGATATTTTTGGTAAAGCCGA 57.303 32.000 0.00 0.00 41.21 5.54
364 365 8.026607 TCAAAAGAGATATTTTTGGTAAAGCCG 58.973 33.333 9.95 0.00 42.75 5.52
365 366 9.358872 CTCAAAAGAGATATTTTTGGTAAAGCC 57.641 33.333 9.95 0.00 42.75 4.35
383 384 6.629128 TCAACACAAAATTGCTCTCAAAAGA 58.371 32.000 0.00 0.00 35.56 2.52
384 385 6.890663 TCAACACAAAATTGCTCTCAAAAG 57.109 33.333 0.00 0.00 35.56 2.27
385 386 7.148440 CCTTTCAACACAAAATTGCTCTCAAAA 60.148 33.333 0.00 0.00 35.56 2.44
386 387 6.313411 CCTTTCAACACAAAATTGCTCTCAAA 59.687 34.615 0.00 0.00 35.56 2.69
387 388 5.811613 CCTTTCAACACAAAATTGCTCTCAA 59.188 36.000 0.00 0.00 36.51 3.02
388 389 5.350633 CCTTTCAACACAAAATTGCTCTCA 58.649 37.500 0.00 0.00 0.00 3.27
389 390 4.746611 CCCTTTCAACACAAAATTGCTCTC 59.253 41.667 0.00 0.00 0.00 3.20
390 391 4.696455 CCCTTTCAACACAAAATTGCTCT 58.304 39.130 0.00 0.00 0.00 4.09
391 392 3.248363 GCCCTTTCAACACAAAATTGCTC 59.752 43.478 0.00 0.00 0.00 4.26
392 393 3.205338 GCCCTTTCAACACAAAATTGCT 58.795 40.909 0.00 0.00 0.00 3.91
393 394 2.941720 TGCCCTTTCAACACAAAATTGC 59.058 40.909 0.00 0.00 0.00 3.56
394 395 3.001127 CGTGCCCTTTCAACACAAAATTG 59.999 43.478 0.00 0.00 33.89 2.32
395 396 3.194062 CGTGCCCTTTCAACACAAAATT 58.806 40.909 0.00 0.00 33.89 1.82
396 397 2.167487 ACGTGCCCTTTCAACACAAAAT 59.833 40.909 0.00 0.00 33.89 1.82
397 398 1.546476 ACGTGCCCTTTCAACACAAAA 59.454 42.857 0.00 0.00 33.89 2.44
398 399 1.178276 ACGTGCCCTTTCAACACAAA 58.822 45.000 0.00 0.00 33.89 2.83
399 400 1.178276 AACGTGCCCTTTCAACACAA 58.822 45.000 0.00 0.00 33.89 3.33
400 401 1.178276 AAACGTGCCCTTTCAACACA 58.822 45.000 0.00 0.00 33.89 3.72
401 402 1.923864 CAAAACGTGCCCTTTCAACAC 59.076 47.619 0.00 0.00 0.00 3.32
402 403 1.819288 TCAAAACGTGCCCTTTCAACA 59.181 42.857 0.00 0.00 0.00 3.33
403 404 2.459934 CTCAAAACGTGCCCTTTCAAC 58.540 47.619 0.00 0.00 0.00 3.18
404 405 1.407258 CCTCAAAACGTGCCCTTTCAA 59.593 47.619 0.00 0.00 0.00 2.69
405 406 1.028905 CCTCAAAACGTGCCCTTTCA 58.971 50.000 0.00 0.00 0.00 2.69
406 407 0.313987 CCCTCAAAACGTGCCCTTTC 59.686 55.000 0.00 0.00 0.00 2.62
407 408 0.106419 TCCCTCAAAACGTGCCCTTT 60.106 50.000 0.00 0.00 0.00 3.11
408 409 0.112412 ATCCCTCAAAACGTGCCCTT 59.888 50.000 0.00 0.00 0.00 3.95
409 410 0.988832 TATCCCTCAAAACGTGCCCT 59.011 50.000 0.00 0.00 0.00 5.19
410 411 1.471287 GTTATCCCTCAAAACGTGCCC 59.529 52.381 0.00 0.00 0.00 5.36
411 412 2.418976 GAGTTATCCCTCAAAACGTGCC 59.581 50.000 0.00 0.00 0.00 5.01
412 413 2.418976 GGAGTTATCCCTCAAAACGTGC 59.581 50.000 0.00 0.00 40.03 5.34
422 423 4.354087 ACAAAAGTTGGAGGAGTTATCCCT 59.646 41.667 0.00 0.00 39.89 4.20
423 424 4.459337 CACAAAAGTTGGAGGAGTTATCCC 59.541 45.833 0.00 0.00 39.89 3.85
424 425 5.313712 TCACAAAAGTTGGAGGAGTTATCC 58.686 41.667 0.00 0.00 39.55 2.59
425 426 6.231211 TCTCACAAAAGTTGGAGGAGTTATC 58.769 40.000 0.00 0.00 32.70 1.75
426 427 6.187727 TCTCACAAAAGTTGGAGGAGTTAT 57.812 37.500 0.00 0.00 32.70 1.89
427 428 5.623956 TCTCACAAAAGTTGGAGGAGTTA 57.376 39.130 0.00 0.00 32.70 2.24
428 429 4.503714 TCTCACAAAAGTTGGAGGAGTT 57.496 40.909 0.00 0.00 32.70 3.01
429 430 4.713792 ATCTCACAAAAGTTGGAGGAGT 57.286 40.909 0.00 0.00 32.70 3.85
430 431 7.011857 GCTATAATCTCACAAAAGTTGGAGGAG 59.988 40.741 0.00 0.00 32.38 3.69
431 432 6.823689 GCTATAATCTCACAAAAGTTGGAGGA 59.176 38.462 0.00 0.00 32.38 3.71
432 433 6.825721 AGCTATAATCTCACAAAAGTTGGAGG 59.174 38.462 0.00 0.00 32.38 4.30
433 434 7.856145 AGCTATAATCTCACAAAAGTTGGAG 57.144 36.000 0.00 0.00 34.12 3.86
438 439 8.598041 CCCCTATAGCTATAATCTCACAAAAGT 58.402 37.037 14.30 0.00 0.00 2.66
439 440 8.816894 TCCCCTATAGCTATAATCTCACAAAAG 58.183 37.037 14.30 0.48 0.00 2.27
440 441 8.736097 TCCCCTATAGCTATAATCTCACAAAA 57.264 34.615 14.30 0.00 0.00 2.44
441 442 8.736097 TTCCCCTATAGCTATAATCTCACAAA 57.264 34.615 14.30 0.09 0.00 2.83
442 443 7.956315 ACTTCCCCTATAGCTATAATCTCACAA 59.044 37.037 14.30 1.77 0.00 3.33
443 444 7.479579 ACTTCCCCTATAGCTATAATCTCACA 58.520 38.462 14.30 0.00 0.00 3.58
444 445 7.964666 ACTTCCCCTATAGCTATAATCTCAC 57.035 40.000 14.30 0.00 0.00 3.51
445 446 8.402683 AGAACTTCCCCTATAGCTATAATCTCA 58.597 37.037 14.30 0.00 0.00 3.27
446 447 8.832458 AGAACTTCCCCTATAGCTATAATCTC 57.168 38.462 14.30 3.87 0.00 2.75
447 448 9.930158 CTAGAACTTCCCCTATAGCTATAATCT 57.070 37.037 14.30 9.70 0.00 2.40
448 449 8.635328 GCTAGAACTTCCCCTATAGCTATAATC 58.365 40.741 14.30 4.01 34.27 1.75
449 450 7.565768 GGCTAGAACTTCCCCTATAGCTATAAT 59.434 40.741 14.30 0.00 36.67 1.28
450 451 6.896307 GGCTAGAACTTCCCCTATAGCTATAA 59.104 42.308 14.30 0.70 36.67 0.98
451 452 6.011007 TGGCTAGAACTTCCCCTATAGCTATA 60.011 42.308 12.84 12.84 36.67 1.31
452 453 5.222568 TGGCTAGAACTTCCCCTATAGCTAT 60.223 44.000 11.77 11.77 36.67 2.97
453 454 4.107473 TGGCTAGAACTTCCCCTATAGCTA 59.893 45.833 0.00 0.00 36.67 3.32
454 455 3.116707 TGGCTAGAACTTCCCCTATAGCT 60.117 47.826 0.00 0.00 36.67 3.32
455 456 3.007074 GTGGCTAGAACTTCCCCTATAGC 59.993 52.174 0.00 0.00 35.91 2.97
456 457 4.039366 GTGTGGCTAGAACTTCCCCTATAG 59.961 50.000 0.00 0.00 0.00 1.31
457 458 3.965347 GTGTGGCTAGAACTTCCCCTATA 59.035 47.826 0.00 0.00 0.00 1.31
458 459 2.772515 GTGTGGCTAGAACTTCCCCTAT 59.227 50.000 0.00 0.00 0.00 2.57
459 460 2.185387 GTGTGGCTAGAACTTCCCCTA 58.815 52.381 0.00 0.00 0.00 3.53
460 461 0.984995 GTGTGGCTAGAACTTCCCCT 59.015 55.000 0.00 0.00 0.00 4.79
461 462 0.035343 GGTGTGGCTAGAACTTCCCC 60.035 60.000 0.00 0.00 0.00 4.81
462 463 0.690762 TGGTGTGGCTAGAACTTCCC 59.309 55.000 0.00 0.00 0.00 3.97
463 464 2.789409 ATGGTGTGGCTAGAACTTCC 57.211 50.000 0.00 0.00 0.00 3.46
464 465 6.759497 AAAATATGGTGTGGCTAGAACTTC 57.241 37.500 0.00 0.00 0.00 3.01
465 466 8.823220 ATAAAAATATGGTGTGGCTAGAACTT 57.177 30.769 0.00 0.00 0.00 2.66
466 467 8.823220 AATAAAAATATGGTGTGGCTAGAACT 57.177 30.769 0.00 0.00 0.00 3.01
467 468 9.516314 GAAATAAAAATATGGTGTGGCTAGAAC 57.484 33.333 0.00 0.00 0.00 3.01
468 469 9.474313 AGAAATAAAAATATGGTGTGGCTAGAA 57.526 29.630 0.00 0.00 0.00 2.10
469 470 9.474313 AAGAAATAAAAATATGGTGTGGCTAGA 57.526 29.630 0.00 0.00 0.00 2.43
484 485 9.575783 GGGTCGCAAACATATAAGAAATAAAAA 57.424 29.630 0.00 0.00 0.00 1.94
485 486 8.962679 AGGGTCGCAAACATATAAGAAATAAAA 58.037 29.630 0.00 0.00 0.00 1.52
486 487 8.514330 AGGGTCGCAAACATATAAGAAATAAA 57.486 30.769 0.00 0.00 0.00 1.40
487 488 9.048446 GTAGGGTCGCAAACATATAAGAAATAA 57.952 33.333 0.00 0.00 0.00 1.40
488 489 8.426489 AGTAGGGTCGCAAACATATAAGAAATA 58.574 33.333 0.00 0.00 0.00 1.40
489 490 7.280356 AGTAGGGTCGCAAACATATAAGAAAT 58.720 34.615 0.00 0.00 0.00 2.17
490 491 6.646267 AGTAGGGTCGCAAACATATAAGAAA 58.354 36.000 0.00 0.00 0.00 2.52
491 492 6.229936 AGTAGGGTCGCAAACATATAAGAA 57.770 37.500 0.00 0.00 0.00 2.52
492 493 5.864418 AGTAGGGTCGCAAACATATAAGA 57.136 39.130 0.00 0.00 0.00 2.10
493 494 6.238374 CCAAAGTAGGGTCGCAAACATATAAG 60.238 42.308 0.00 0.00 0.00 1.73
494 495 5.587043 CCAAAGTAGGGTCGCAAACATATAA 59.413 40.000 0.00 0.00 0.00 0.98
495 496 5.120399 CCAAAGTAGGGTCGCAAACATATA 58.880 41.667 0.00 0.00 0.00 0.86
496 497 3.945285 CCAAAGTAGGGTCGCAAACATAT 59.055 43.478 0.00 0.00 0.00 1.78
497 498 3.340034 CCAAAGTAGGGTCGCAAACATA 58.660 45.455 0.00 0.00 0.00 2.29
498 499 2.159382 CCAAAGTAGGGTCGCAAACAT 58.841 47.619 0.00 0.00 0.00 2.71
499 500 1.600023 CCAAAGTAGGGTCGCAAACA 58.400 50.000 0.00 0.00 0.00 2.83
500 501 0.240145 GCCAAAGTAGGGTCGCAAAC 59.760 55.000 0.00 0.00 0.00 2.93
501 502 0.179015 TGCCAAAGTAGGGTCGCAAA 60.179 50.000 0.00 0.00 0.00 3.68
502 503 0.887387 GTGCCAAAGTAGGGTCGCAA 60.887 55.000 0.00 0.00 0.00 4.85
503 504 1.302192 GTGCCAAAGTAGGGTCGCA 60.302 57.895 0.00 0.00 0.00 5.10
504 505 0.887387 TTGTGCCAAAGTAGGGTCGC 60.887 55.000 0.00 0.00 0.00 5.19
505 506 1.156736 CTTGTGCCAAAGTAGGGTCG 58.843 55.000 0.00 0.00 0.00 4.79
506 507 2.561478 TCTTGTGCCAAAGTAGGGTC 57.439 50.000 0.00 0.00 0.00 4.46
507 508 2.290960 GGATCTTGTGCCAAAGTAGGGT 60.291 50.000 0.00 0.00 0.00 4.34
508 509 2.290896 TGGATCTTGTGCCAAAGTAGGG 60.291 50.000 0.00 0.00 0.00 3.53
509 510 3.071874 TGGATCTTGTGCCAAAGTAGG 57.928 47.619 0.00 0.00 0.00 3.18
510 511 4.012374 ACATGGATCTTGTGCCAAAGTAG 58.988 43.478 0.00 0.00 37.78 2.57
511 512 3.758023 CACATGGATCTTGTGCCAAAGTA 59.242 43.478 13.77 0.00 38.18 2.24
512 513 2.559668 CACATGGATCTTGTGCCAAAGT 59.440 45.455 13.77 0.00 38.18 2.66
513 514 2.821378 TCACATGGATCTTGTGCCAAAG 59.179 45.455 18.66 0.00 43.29 2.77
514 515 2.874014 TCACATGGATCTTGTGCCAAA 58.126 42.857 18.66 5.05 43.29 3.28
515 516 2.583024 TCACATGGATCTTGTGCCAA 57.417 45.000 18.66 5.32 43.29 4.52
516 517 2.812836 ATCACATGGATCTTGTGCCA 57.187 45.000 18.66 8.15 43.29 4.92
517 518 4.460948 AAAATCACATGGATCTTGTGCC 57.539 40.909 18.66 0.00 43.29 5.01
518 519 6.311200 GGTTAAAAATCACATGGATCTTGTGC 59.689 38.462 18.66 7.27 43.29 4.57
519 520 7.605449 AGGTTAAAAATCACATGGATCTTGTG 58.395 34.615 17.84 17.84 44.62 3.33
520 521 7.781324 AGGTTAAAAATCACATGGATCTTGT 57.219 32.000 0.00 0.00 34.28 3.16
521 522 8.190784 GGTAGGTTAAAAATCACATGGATCTTG 58.809 37.037 0.00 0.00 34.28 3.02
522 523 8.116026 AGGTAGGTTAAAAATCACATGGATCTT 58.884 33.333 0.00 0.00 34.28 2.40
523 524 7.643123 AGGTAGGTTAAAAATCACATGGATCT 58.357 34.615 0.00 0.00 34.28 2.75
524 525 7.013369 GGAGGTAGGTTAAAAATCACATGGATC 59.987 40.741 0.00 0.00 34.28 3.36
525 526 6.833933 GGAGGTAGGTTAAAAATCACATGGAT 59.166 38.462 0.00 0.00 38.05 3.41
526 527 6.184789 GGAGGTAGGTTAAAAATCACATGGA 58.815 40.000 0.00 0.00 0.00 3.41
527 528 5.949354 TGGAGGTAGGTTAAAAATCACATGG 59.051 40.000 0.00 0.00 0.00 3.66
528 529 6.403200 CGTGGAGGTAGGTTAAAAATCACATG 60.403 42.308 0.00 0.00 0.00 3.21
529 530 5.646360 CGTGGAGGTAGGTTAAAAATCACAT 59.354 40.000 0.00 0.00 0.00 3.21
530 531 4.998672 CGTGGAGGTAGGTTAAAAATCACA 59.001 41.667 0.00 0.00 0.00 3.58
531 532 4.999311 ACGTGGAGGTAGGTTAAAAATCAC 59.001 41.667 0.00 0.00 0.00 3.06
532 533 5.231702 ACGTGGAGGTAGGTTAAAAATCA 57.768 39.130 0.00 0.00 0.00 2.57
533 534 6.401394 AGTACGTGGAGGTAGGTTAAAAATC 58.599 40.000 0.00 0.00 0.00 2.17
534 535 6.364568 AGTACGTGGAGGTAGGTTAAAAAT 57.635 37.500 0.00 0.00 0.00 1.82
535 536 5.806654 AGTACGTGGAGGTAGGTTAAAAA 57.193 39.130 0.00 0.00 0.00 1.94
536 537 6.909550 TTAGTACGTGGAGGTAGGTTAAAA 57.090 37.500 0.00 0.00 0.00 1.52
537 538 8.766994 ATATTAGTACGTGGAGGTAGGTTAAA 57.233 34.615 0.00 0.00 0.00 1.52
538 539 9.507329 CTATATTAGTACGTGGAGGTAGGTTAA 57.493 37.037 0.00 0.00 0.00 2.01
539 540 8.660435 ACTATATTAGTACGTGGAGGTAGGTTA 58.340 37.037 0.00 0.00 37.23 2.85
540 541 7.521669 ACTATATTAGTACGTGGAGGTAGGTT 58.478 38.462 0.00 0.00 37.23 3.50
541 542 7.084268 ACTATATTAGTACGTGGAGGTAGGT 57.916 40.000 0.00 0.00 37.23 3.08
542 543 7.992754 AACTATATTAGTACGTGGAGGTAGG 57.007 40.000 0.00 0.00 38.26 3.18
543 544 9.160496 CCTAACTATATTAGTACGTGGAGGTAG 57.840 40.741 0.00 0.00 38.26 3.18
544 545 8.103305 CCCTAACTATATTAGTACGTGGAGGTA 58.897 40.741 0.00 0.00 38.26 3.08
545 546 6.944862 CCCTAACTATATTAGTACGTGGAGGT 59.055 42.308 0.00 0.00 38.26 3.85
546 547 6.944862 ACCCTAACTATATTAGTACGTGGAGG 59.055 42.308 0.00 0.00 38.26 4.30
547 548 7.992754 ACCCTAACTATATTAGTACGTGGAG 57.007 40.000 0.00 0.00 38.26 3.86
548 549 9.860650 TTAACCCTAACTATATTAGTACGTGGA 57.139 33.333 0.00 0.00 38.26 4.02
561 562 9.363401 GGCAAAAGGATAATTAACCCTAACTAT 57.637 33.333 8.09 0.00 0.00 2.12
562 563 7.781219 GGGCAAAAGGATAATTAACCCTAACTA 59.219 37.037 8.09 0.00 31.84 2.24
563 564 6.610020 GGGCAAAAGGATAATTAACCCTAACT 59.390 38.462 8.09 0.00 31.84 2.24
564 565 6.610020 AGGGCAAAAGGATAATTAACCCTAAC 59.390 38.462 8.09 0.00 43.36 2.34
889 892 1.422179 CGTCGTGCTCTCGCTCTCTA 61.422 60.000 0.00 0.00 36.97 2.43
940 945 0.545309 TCCACAGCTAGCTTCCCACT 60.545 55.000 16.46 0.00 0.00 4.00
1063 1070 1.292061 CACCACGGACAAACGAAGAA 58.708 50.000 0.00 0.00 37.61 2.52
1071 1078 4.947147 GCCTGGCACCACGGACAA 62.947 66.667 15.17 0.00 0.00 3.18
1085 1092 3.417275 CTCCGATCAACGCTCGCCT 62.417 63.158 0.00 0.00 41.07 5.52
1204 1211 2.440409 ACAGATCAACCCATTGCTCAC 58.560 47.619 0.00 0.00 34.09 3.51
1237 1244 4.761739 CCAAAGAAAGAAGCATGTCACCTA 59.238 41.667 0.00 0.00 0.00 3.08
1468 1477 4.071423 GCCCAAAAGTATTTGCAAATGGT 58.929 39.130 30.43 16.65 43.73 3.55
1530 1539 7.039574 TCCATAATTCATGCCTTTCCATACATG 60.040 37.037 0.00 0.00 40.97 3.21
1713 1732 5.072741 TGGCTCTGGAATAATTCATTAGCC 58.927 41.667 13.71 13.71 43.57 3.93
1786 1805 9.716507 CGGTGTATTTGAATTGGATTACTTAAG 57.283 33.333 0.00 0.00 0.00 1.85
1969 1989 2.162906 AAGTCCCCAGCCACACCAT 61.163 57.895 0.00 0.00 0.00 3.55
1975 1995 2.840753 GGGTTCAAGTCCCCAGCCA 61.841 63.158 0.00 0.00 40.88 4.75
1987 2007 4.308458 CACGCGGTCCTGGGTTCA 62.308 66.667 12.47 0.00 32.02 3.18
2373 2410 4.160439 ACCAAGTCATGAAGCTCGAGAATA 59.840 41.667 18.75 0.00 0.00 1.75
2374 2411 3.055530 ACCAAGTCATGAAGCTCGAGAAT 60.056 43.478 18.75 2.82 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.