Multiple sequence alignment - TraesCS3B01G573100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G573100 chr3B 100.000 3481 0 0 1 3481 804114451 804110971 0.000000e+00 6429
1 TraesCS3B01G573100 chr3B 86.711 1520 171 17 984 2492 803513072 803511573 0.000000e+00 1659
2 TraesCS3B01G573100 chr3B 88.530 959 94 8 1542 2492 803334573 803333623 0.000000e+00 1147
3 TraesCS3B01G573100 chr3B 88.321 959 97 7 1542 2492 803364464 803363513 0.000000e+00 1136
4 TraesCS3B01G573100 chr3B 87.708 960 95 10 1542 2492 803462197 803461252 0.000000e+00 1098
5 TraesCS3B01G573100 chr3B 84.037 758 75 26 2745 3480 803540625 803541358 0.000000e+00 688
6 TraesCS3B01G573100 chr3B 84.069 521 57 17 2766 3268 803363473 803362961 2.430000e-131 479
7 TraesCS3B01G573100 chr3B 84.078 515 56 17 2772 3268 803511522 803511016 1.130000e-129 473
8 TraesCS3B01G573100 chr3B 83.685 521 59 17 2766 3268 803461212 803460700 5.260000e-128 468
9 TraesCS3B01G573100 chr3B 87.955 357 39 3 1114 1466 803426232 803425876 5.370000e-113 418
10 TraesCS3B01G573100 chr3B 82.857 350 40 10 2933 3268 803561584 803561927 2.630000e-76 296
11 TraesCS3B01G573100 chr3B 88.785 214 19 5 3267 3480 803324888 803324680 1.240000e-64 257
12 TraesCS3B01G573100 chr3B 88.263 213 20 5 3267 3479 803496995 803496788 2.070000e-62 250
13 TraesCS3B01G573100 chr3B 87.273 110 7 3 2745 2852 803561471 803561575 6.100000e-23 119
14 TraesCS3B01G573100 chr2A 91.196 1840 114 18 725 2545 605310663 605312473 0.000000e+00 2457
15 TraesCS3B01G573100 chr2A 93.864 766 27 8 2728 3481 605312465 605313222 0.000000e+00 1136
16 TraesCS3B01G573100 chr2A 91.617 334 28 0 3 336 605209655 605209988 2.450000e-126 462
17 TraesCS3B01G573100 chr2A 91.018 334 30 0 3 336 605657188 605657521 5.300000e-123 451
18 TraesCS3B01G573100 chr2A 88.393 336 17 1 1 336 605593254 605592941 5.450000e-103 385
19 TraesCS3B01G573100 chr2A 84.190 253 21 10 334 586 605310231 605310464 9.720000e-56 228
20 TraesCS3B01G573100 chr2A 94.937 79 4 0 648 726 605310460 605310538 1.310000e-24 124
21 TraesCS3B01G573100 chr3D 91.627 1684 113 15 879 2545 597266059 597264387 0.000000e+00 2303
22 TraesCS3B01G573100 chr3D 87.771 1521 155 18 983 2492 596993903 596995403 0.000000e+00 1749
23 TraesCS3B01G573100 chr3D 86.656 637 62 15 2783 3407 596995429 596996054 0.000000e+00 684
24 TraesCS3B01G573100 chr3D 94.904 314 11 4 2728 3036 597264395 597264082 1.450000e-133 486
25 TraesCS3B01G573100 chr3D 92.582 337 23 2 1 336 597290544 597290209 1.880000e-132 483
26 TraesCS3B01G573100 chr3D 87.277 393 29 3 334 726 597266644 597266273 2.480000e-116 429
27 TraesCS3B01G573100 chr3D 93.069 101 5 1 742 840 597266155 597266055 2.800000e-31 147
28 TraesCS3B01G573100 chr3A 85.910 1533 170 25 1015 2517 727180666 727182182 0.000000e+00 1592
29 TraesCS3B01G573100 chr3A 89.879 909 59 9 964 1872 727365361 727366236 0.000000e+00 1138
30 TraesCS3B01G573100 chr3A 87.003 1031 106 15 1544 2547 727185498 727186527 0.000000e+00 1136
31 TraesCS3B01G573100 chr3A 85.893 560 49 13 2772 3326 727186563 727187097 1.400000e-158 569
32 TraesCS3B01G573100 chr3A 93.036 359 18 3 2997 3355 727371945 727372296 5.150000e-143 518
33 TraesCS3B01G573100 chr3A 92.239 335 24 2 3 336 727387778 727387445 1.130000e-129 473
34 TraesCS3B01G573100 chr3A 85.533 394 35 8 333 726 727364357 727364728 3.260000e-105 392
35 TraesCS3B01G573100 chr3A 89.730 185 18 1 2544 2728 738953721 738953904 5.810000e-58 235
36 TraesCS3B01G573100 chr3A 96.875 128 4 0 3354 3481 727372511 727372638 7.570000e-52 215
37 TraesCS3B01G573100 chr3A 88.189 127 6 4 722 840 727364849 727364974 3.620000e-30 143
38 TraesCS3B01G573100 chr4B 84.124 1518 189 29 997 2484 86359292 86360787 0.000000e+00 1421
39 TraesCS3B01G573100 chr4A 83.323 1589 195 31 1012 2545 538906752 538905179 0.000000e+00 1402
40 TraesCS3B01G573100 chrUn 88.193 974 99 8 1527 2492 303788917 303789882 0.000000e+00 1147
41 TraesCS3B01G573100 chrUn 88.193 974 99 8 1527 2492 308985222 308986187 0.000000e+00 1147
42 TraesCS3B01G573100 chrUn 86.944 1034 107 15 1544 2550 277309201 277308169 0.000000e+00 1136
43 TraesCS3B01G573100 chrUn 87.885 974 103 7 1527 2492 291468965 291469931 0.000000e+00 1131
44 TraesCS3B01G573100 chrUn 85.893 560 49 13 2772 3326 277308136 277307602 1.400000e-158 569
45 TraesCS3B01G573100 chrUn 87.955 357 39 3 1114 1466 412425619 412425975 5.370000e-113 418
46 TraesCS3B01G573100 chrUn 87.850 214 21 5 3267 3480 292088138 292087930 2.680000e-61 246
47 TraesCS3B01G573100 chrUn 87.850 214 21 5 3267 3480 312304713 312304505 2.680000e-61 246
48 TraesCS3B01G573100 chr7D 78.923 427 50 18 334 725 472686188 472685767 1.600000e-63 254
49 TraesCS3B01G573100 chr2D 90.860 186 17 0 2544 2729 630131404 630131589 2.070000e-62 250
50 TraesCS3B01G573100 chr2D 89.247 186 19 1 2543 2727 520741963 520742148 7.510000e-57 231
51 TraesCS3B01G573100 chr2D 90.789 76 5 2 357 431 341665027 341665101 2.210000e-17 100
52 TraesCS3B01G573100 chr2D 90.789 76 5 2 357 431 611910309 611910383 2.210000e-17 100
53 TraesCS3B01G573100 chr1D 91.209 182 16 0 2547 2728 23372043 23371862 7.460000e-62 248
54 TraesCS3B01G573100 chr1D 91.477 176 15 0 2547 2722 471758257 471758432 3.470000e-60 243
55 TraesCS3B01G573100 chr1A 88.601 193 19 3 2538 2729 553880537 553880347 7.510000e-57 231
56 TraesCS3B01G573100 chr2B 89.444 180 19 0 2547 2726 621966492 621966313 9.720000e-56 228
57 TraesCS3B01G573100 chr2B 88.587 184 17 3 2547 2730 446108873 446108694 1.630000e-53 220
58 TraesCS3B01G573100 chr2B 87.895 190 17 3 2547 2735 609150354 609150538 5.850000e-53 219


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G573100 chr3B 804110971 804114451 3480 True 6429.000000 6429 100.000000 1 3481 1 chr3B.!!$R5 3480
1 TraesCS3B01G573100 chr3B 803333623 803334573 950 True 1147.000000 1147 88.530000 1542 2492 1 chr3B.!!$R2 950
2 TraesCS3B01G573100 chr3B 803511016 803513072 2056 True 1066.000000 1659 85.394500 984 3268 2 chr3B.!!$R8 2284
3 TraesCS3B01G573100 chr3B 803362961 803364464 1503 True 807.500000 1136 86.195000 1542 3268 2 chr3B.!!$R6 1726
4 TraesCS3B01G573100 chr3B 803460700 803462197 1497 True 783.000000 1098 85.696500 1542 3268 2 chr3B.!!$R7 1726
5 TraesCS3B01G573100 chr3B 803540625 803541358 733 False 688.000000 688 84.037000 2745 3480 1 chr3B.!!$F1 735
6 TraesCS3B01G573100 chr2A 605310231 605313222 2991 False 986.250000 2457 91.046750 334 3481 4 chr2A.!!$F3 3147
7 TraesCS3B01G573100 chr3D 596993903 596996054 2151 False 1216.500000 1749 87.213500 983 3407 2 chr3D.!!$F1 2424
8 TraesCS3B01G573100 chr3D 597264082 597266644 2562 True 841.250000 2303 91.719250 334 3036 4 chr3D.!!$R2 2702
9 TraesCS3B01G573100 chr3A 727180666 727187097 6431 False 1099.000000 1592 86.268667 1015 3326 3 chr3A.!!$F2 2311
10 TraesCS3B01G573100 chr3A 727364357 727366236 1879 False 557.666667 1138 87.867000 333 1872 3 chr3A.!!$F3 1539
11 TraesCS3B01G573100 chr3A 727371945 727372638 693 False 366.500000 518 94.955500 2997 3481 2 chr3A.!!$F4 484
12 TraesCS3B01G573100 chr4B 86359292 86360787 1495 False 1421.000000 1421 84.124000 997 2484 1 chr4B.!!$F1 1487
13 TraesCS3B01G573100 chr4A 538905179 538906752 1573 True 1402.000000 1402 83.323000 1012 2545 1 chr4A.!!$R1 1533
14 TraesCS3B01G573100 chrUn 303788917 303789882 965 False 1147.000000 1147 88.193000 1527 2492 1 chrUn.!!$F2 965
15 TraesCS3B01G573100 chrUn 308985222 308986187 965 False 1147.000000 1147 88.193000 1527 2492 1 chrUn.!!$F3 965
16 TraesCS3B01G573100 chrUn 291468965 291469931 966 False 1131.000000 1131 87.885000 1527 2492 1 chrUn.!!$F1 965
17 TraesCS3B01G573100 chrUn 277307602 277309201 1599 True 852.500000 1136 86.418500 1544 3326 2 chrUn.!!$R3 1782

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
456 457 0.108377 TAGTGTTGCGACGATGGCAT 60.108 50.0 0.0 0.0 40.62 4.40 F
899 1042 0.624254 TCCTTCCCTGAGACGAGCTA 59.376 55.0 0.0 0.0 0.00 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1306 1764 0.176680 ATCCACGCCTTGCTGTCTAG 59.823 55.0 0.00 0.0 0.00 2.43 R
2507 7377 0.445436 CAAGAAGATGCTCGCGCTTT 59.555 50.0 5.56 0.0 36.97 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.683365 GGATTGCCCTGAAACAACAAT 57.317 42.857 0.00 0.00 33.82 2.71
30 31 4.799564 GGATTGCCCTGAAACAACAATA 57.200 40.909 0.00 0.00 31.40 1.90
31 32 4.494484 GGATTGCCCTGAAACAACAATAC 58.506 43.478 0.00 0.00 31.40 1.89
32 33 4.021544 GGATTGCCCTGAAACAACAATACA 60.022 41.667 0.00 0.00 32.82 2.29
33 34 5.337491 GGATTGCCCTGAAACAACAATACAT 60.337 40.000 0.00 0.00 32.82 2.29
34 35 4.782019 TGCCCTGAAACAACAATACATC 57.218 40.909 0.00 0.00 0.00 3.06
35 36 4.148079 TGCCCTGAAACAACAATACATCA 58.852 39.130 0.00 0.00 0.00 3.07
36 37 4.586421 TGCCCTGAAACAACAATACATCAA 59.414 37.500 0.00 0.00 0.00 2.57
37 38 5.163513 GCCCTGAAACAACAATACATCAAG 58.836 41.667 0.00 0.00 0.00 3.02
38 39 5.048083 GCCCTGAAACAACAATACATCAAGA 60.048 40.000 0.00 0.00 0.00 3.02
39 40 6.516527 GCCCTGAAACAACAATACATCAAGAA 60.517 38.462 0.00 0.00 0.00 2.52
40 41 7.432869 CCCTGAAACAACAATACATCAAGAAA 58.567 34.615 0.00 0.00 0.00 2.52
41 42 7.925483 CCCTGAAACAACAATACATCAAGAAAA 59.075 33.333 0.00 0.00 0.00 2.29
42 43 8.971321 CCTGAAACAACAATACATCAAGAAAAG 58.029 33.333 0.00 0.00 0.00 2.27
43 44 8.351495 TGAAACAACAATACATCAAGAAAAGC 57.649 30.769 0.00 0.00 0.00 3.51
44 45 7.437862 TGAAACAACAATACATCAAGAAAAGCC 59.562 33.333 0.00 0.00 0.00 4.35
45 46 5.460646 ACAACAATACATCAAGAAAAGCCG 58.539 37.500 0.00 0.00 0.00 5.52
46 47 5.240623 ACAACAATACATCAAGAAAAGCCGA 59.759 36.000 0.00 0.00 0.00 5.54
47 48 6.071952 ACAACAATACATCAAGAAAAGCCGAT 60.072 34.615 0.00 0.00 0.00 4.18
48 49 6.515272 ACAATACATCAAGAAAAGCCGATT 57.485 33.333 0.00 0.00 0.00 3.34
49 50 6.324819 ACAATACATCAAGAAAAGCCGATTG 58.675 36.000 0.00 0.00 0.00 2.67
50 51 3.221964 ACATCAAGAAAAGCCGATTGC 57.778 42.857 0.00 0.00 41.71 3.56
51 52 2.094545 ACATCAAGAAAAGCCGATTGCC 60.095 45.455 0.00 0.00 42.71 4.52
52 53 0.887933 TCAAGAAAAGCCGATTGCCC 59.112 50.000 0.00 0.00 42.71 5.36
53 54 0.456653 CAAGAAAAGCCGATTGCCCG 60.457 55.000 0.00 0.00 42.71 6.13
54 55 0.608035 AAGAAAAGCCGATTGCCCGA 60.608 50.000 0.00 0.00 42.71 5.14
55 56 0.394352 AGAAAAGCCGATTGCCCGAT 60.394 50.000 0.00 0.00 42.71 4.18
56 57 0.248621 GAAAAGCCGATTGCCCGATG 60.249 55.000 0.00 0.00 42.71 3.84
57 58 0.679640 AAAAGCCGATTGCCCGATGA 60.680 50.000 0.00 0.00 42.71 2.92
58 59 1.097547 AAAGCCGATTGCCCGATGAG 61.098 55.000 0.00 0.00 42.71 2.90
59 60 1.971505 AAGCCGATTGCCCGATGAGA 61.972 55.000 0.00 0.00 42.71 3.27
60 61 2.247437 GCCGATTGCCCGATGAGAC 61.247 63.158 0.00 0.00 0.00 3.36
61 62 1.951130 CCGATTGCCCGATGAGACG 60.951 63.158 0.00 0.00 0.00 4.18
62 63 2.589492 CGATTGCCCGATGAGACGC 61.589 63.158 0.00 0.00 0.00 5.19
63 64 2.203070 ATTGCCCGATGAGACGCC 60.203 61.111 0.00 0.00 0.00 5.68
64 65 3.757248 ATTGCCCGATGAGACGCCC 62.757 63.158 0.00 0.00 0.00 6.13
66 67 4.241555 GCCCGATGAGACGCCCAT 62.242 66.667 0.00 0.00 0.00 4.00
67 68 2.029666 CCCGATGAGACGCCCATC 59.970 66.667 0.00 0.00 37.60 3.51
68 69 2.796193 CCCGATGAGACGCCCATCA 61.796 63.158 11.22 0.00 40.17 3.07
69 70 1.300465 CCGATGAGACGCCCATCAG 60.300 63.158 11.22 5.62 40.17 2.90
70 71 1.300465 CGATGAGACGCCCATCAGG 60.300 63.158 11.22 0.00 40.17 3.86
79 80 4.095590 CCCATCAGGCGGTTGTTT 57.904 55.556 0.00 0.00 0.00 2.83
80 81 1.586028 CCCATCAGGCGGTTGTTTG 59.414 57.895 0.00 0.00 0.00 2.93
81 82 1.586028 CCATCAGGCGGTTGTTTGG 59.414 57.895 0.00 0.00 0.00 3.28
82 83 1.586028 CATCAGGCGGTTGTTTGGG 59.414 57.895 0.00 0.00 0.00 4.12
83 84 2.275380 ATCAGGCGGTTGTTTGGGC 61.275 57.895 0.00 0.00 0.00 5.36
84 85 2.713531 ATCAGGCGGTTGTTTGGGCT 62.714 55.000 0.00 0.00 36.99 5.19
85 86 1.602323 CAGGCGGTTGTTTGGGCTA 60.602 57.895 0.00 0.00 34.92 3.93
86 87 1.151908 AGGCGGTTGTTTGGGCTAA 59.848 52.632 0.00 0.00 34.52 3.09
87 88 0.468400 AGGCGGTTGTTTGGGCTAAA 60.468 50.000 0.00 0.00 34.52 1.85
88 89 0.606096 GGCGGTTGTTTGGGCTAAAT 59.394 50.000 0.00 0.00 0.00 1.40
89 90 1.001520 GGCGGTTGTTTGGGCTAAATT 59.998 47.619 0.00 0.00 0.00 1.82
90 91 2.549134 GGCGGTTGTTTGGGCTAAATTT 60.549 45.455 0.00 0.00 0.00 1.82
91 92 3.135225 GCGGTTGTTTGGGCTAAATTTT 58.865 40.909 0.00 0.00 0.00 1.82
92 93 3.059257 GCGGTTGTTTGGGCTAAATTTTG 60.059 43.478 0.00 0.00 0.00 2.44
93 94 4.372656 CGGTTGTTTGGGCTAAATTTTGA 58.627 39.130 3.69 0.00 0.00 2.69
94 95 4.447389 CGGTTGTTTGGGCTAAATTTTGAG 59.553 41.667 3.69 0.00 0.00 3.02
95 96 4.754618 GGTTGTTTGGGCTAAATTTTGAGG 59.245 41.667 3.69 0.00 0.00 3.86
96 97 5.364778 GTTGTTTGGGCTAAATTTTGAGGT 58.635 37.500 3.69 0.00 0.00 3.85
97 98 4.954875 TGTTTGGGCTAAATTTTGAGGTG 58.045 39.130 3.69 0.00 0.00 4.00
98 99 4.407296 TGTTTGGGCTAAATTTTGAGGTGT 59.593 37.500 3.69 0.00 0.00 4.16
99 100 4.864704 TTGGGCTAAATTTTGAGGTGTC 57.135 40.909 3.69 0.00 0.00 3.67
100 101 3.838565 TGGGCTAAATTTTGAGGTGTCA 58.161 40.909 3.69 0.00 0.00 3.58
101 102 3.572255 TGGGCTAAATTTTGAGGTGTCAC 59.428 43.478 3.69 0.00 30.10 3.67
102 103 3.572255 GGGCTAAATTTTGAGGTGTCACA 59.428 43.478 5.12 0.00 30.10 3.58
103 104 4.546570 GGCTAAATTTTGAGGTGTCACAC 58.453 43.478 0.00 0.00 30.10 3.82
104 105 4.219033 GCTAAATTTTGAGGTGTCACACG 58.781 43.478 0.73 0.00 34.83 4.49
105 106 3.708563 AAATTTTGAGGTGTCACACGG 57.291 42.857 0.73 0.00 34.83 4.94
106 107 0.951558 ATTTTGAGGTGTCACACGGC 59.048 50.000 0.73 0.00 34.83 5.68
107 108 0.393132 TTTTGAGGTGTCACACGGCA 60.393 50.000 0.73 0.00 34.83 5.69
108 109 1.092921 TTTGAGGTGTCACACGGCAC 61.093 55.000 0.73 0.00 34.83 5.01
123 124 4.623814 CACGAGGTGCATGTCCAT 57.376 55.556 10.70 0.00 0.00 3.41
124 125 2.858622 CACGAGGTGCATGTCCATT 58.141 52.632 10.70 0.00 0.00 3.16
125 126 0.729116 CACGAGGTGCATGTCCATTC 59.271 55.000 10.70 1.67 0.00 2.67
126 127 0.615331 ACGAGGTGCATGTCCATTCT 59.385 50.000 10.70 0.00 0.00 2.40
127 128 1.831106 ACGAGGTGCATGTCCATTCTA 59.169 47.619 10.70 0.00 0.00 2.10
128 129 2.435805 ACGAGGTGCATGTCCATTCTAT 59.564 45.455 10.70 0.00 0.00 1.98
129 130 2.804527 CGAGGTGCATGTCCATTCTATG 59.195 50.000 10.70 0.00 0.00 2.23
143 144 6.754702 CCATTCTATGGTCATGATCAATCC 57.245 41.667 13.76 2.21 45.54 3.01
144 145 5.353400 CCATTCTATGGTCATGATCAATCCG 59.647 44.000 13.76 2.01 45.54 4.18
145 146 5.806654 TTCTATGGTCATGATCAATCCGA 57.193 39.130 13.76 4.41 0.00 4.55
146 147 6.364568 TTCTATGGTCATGATCAATCCGAT 57.635 37.500 13.76 0.00 36.91 4.18
153 154 2.832931 GATCAATCCGATCCAGGCG 58.167 57.895 0.00 0.00 44.25 5.52
154 155 1.294659 GATCAATCCGATCCAGGCGC 61.295 60.000 0.00 0.00 44.25 6.53
155 156 2.043604 ATCAATCCGATCCAGGCGCA 62.044 55.000 10.83 0.00 0.00 6.09
156 157 2.203070 AATCCGATCCAGGCGCAC 60.203 61.111 10.83 0.00 0.00 5.34
157 158 3.757248 AATCCGATCCAGGCGCACC 62.757 63.158 10.83 0.00 0.00 5.01
171 172 3.353836 CACCCCGAACACGCCTTG 61.354 66.667 0.00 0.00 0.00 3.61
174 175 3.423154 CCCGAACACGCCTTGCTC 61.423 66.667 0.00 0.00 0.00 4.26
175 176 3.777925 CCGAACACGCCTTGCTCG 61.778 66.667 0.00 0.00 42.41 5.03
176 177 2.733218 CGAACACGCCTTGCTCGA 60.733 61.111 0.55 0.00 45.02 4.04
177 178 2.720758 CGAACACGCCTTGCTCGAG 61.721 63.158 8.45 8.45 45.02 4.04
178 179 1.372997 GAACACGCCTTGCTCGAGA 60.373 57.895 18.75 0.00 0.00 4.04
179 180 1.347817 GAACACGCCTTGCTCGAGAG 61.348 60.000 18.75 5.26 0.00 3.20
190 191 1.365633 CTCGAGAGCCCAGTATGCC 59.634 63.158 6.58 0.00 31.97 4.40
191 192 1.381191 TCGAGAGCCCAGTATGCCA 60.381 57.895 0.00 0.00 31.97 4.92
192 193 1.227380 CGAGAGCCCAGTATGCCAC 60.227 63.158 0.00 0.00 31.97 5.01
193 194 1.147153 GAGAGCCCAGTATGCCACC 59.853 63.158 0.00 0.00 31.97 4.61
194 195 2.193248 GAGCCCAGTATGCCACCC 59.807 66.667 0.00 0.00 31.97 4.61
195 196 3.420482 AGCCCAGTATGCCACCCC 61.420 66.667 0.00 0.00 31.97 4.95
196 197 3.738481 GCCCAGTATGCCACCCCA 61.738 66.667 0.00 0.00 31.97 4.96
197 198 2.275418 CCCAGTATGCCACCCCAC 59.725 66.667 0.00 0.00 31.97 4.61
198 199 2.124736 CCAGTATGCCACCCCACG 60.125 66.667 0.00 0.00 31.97 4.94
199 200 2.124736 CAGTATGCCACCCCACGG 60.125 66.667 0.00 0.00 0.00 4.94
200 201 2.609610 AGTATGCCACCCCACGGT 60.610 61.111 0.00 0.00 46.31 4.83
208 209 3.618750 ACCCCACGGTGTACCACG 61.619 66.667 7.45 4.94 42.48 4.94
209 210 4.382320 CCCCACGGTGTACCACGG 62.382 72.222 7.45 0.00 39.91 4.94
211 212 4.302509 CCACGGTGTACCACGGCA 62.303 66.667 7.45 0.00 38.06 5.69
212 213 2.736995 CACGGTGTACCACGGCAG 60.737 66.667 10.44 0.00 38.06 4.85
213 214 2.913578 ACGGTGTACCACGGCAGA 60.914 61.111 10.44 0.00 38.06 4.26
214 215 2.126071 CGGTGTACCACGGCAGAG 60.126 66.667 1.50 0.00 34.83 3.35
215 216 2.632544 CGGTGTACCACGGCAGAGA 61.633 63.158 1.50 0.00 34.83 3.10
216 217 1.080025 GGTGTACCACGGCAGAGAC 60.080 63.158 0.00 0.00 34.83 3.36
217 218 1.443872 GTGTACCACGGCAGAGACG 60.444 63.158 0.00 0.00 41.40 4.18
218 219 1.601477 TGTACCACGGCAGAGACGA 60.601 57.895 0.00 0.00 35.20 4.20
219 220 0.963856 TGTACCACGGCAGAGACGAT 60.964 55.000 0.00 0.00 35.20 3.73
220 221 0.525668 GTACCACGGCAGAGACGATG 60.526 60.000 0.00 0.00 35.20 3.84
221 222 0.963856 TACCACGGCAGAGACGATGT 60.964 55.000 0.00 0.00 35.20 3.06
222 223 1.079819 CCACGGCAGAGACGATGTT 60.080 57.895 0.00 0.00 35.20 2.71
223 224 1.354337 CCACGGCAGAGACGATGTTG 61.354 60.000 0.00 0.00 35.20 3.33
224 225 1.738099 ACGGCAGAGACGATGTTGC 60.738 57.895 0.00 0.00 35.20 4.17
225 226 2.792290 CGGCAGAGACGATGTTGCG 61.792 63.158 0.00 0.00 35.20 4.85
226 227 2.456119 GGCAGAGACGATGTTGCGG 61.456 63.158 0.00 0.00 37.43 5.69
227 228 1.446099 GCAGAGACGATGTTGCGGA 60.446 57.895 0.00 0.00 35.12 5.54
228 229 0.807667 GCAGAGACGATGTTGCGGAT 60.808 55.000 0.00 0.00 35.12 4.18
229 230 1.203928 CAGAGACGATGTTGCGGATC 58.796 55.000 0.00 0.00 35.12 3.36
230 231 1.107114 AGAGACGATGTTGCGGATCT 58.893 50.000 0.00 0.00 35.12 2.75
231 232 1.478510 AGAGACGATGTTGCGGATCTT 59.521 47.619 0.00 0.00 35.12 2.40
232 233 1.590238 GAGACGATGTTGCGGATCTTG 59.410 52.381 0.00 0.00 35.12 3.02
233 234 1.204704 AGACGATGTTGCGGATCTTGA 59.795 47.619 0.00 0.00 35.12 3.02
234 235 1.999735 GACGATGTTGCGGATCTTGAA 59.000 47.619 0.00 0.00 35.12 2.69
235 236 2.415168 GACGATGTTGCGGATCTTGAAA 59.585 45.455 0.00 0.00 35.12 2.69
236 237 2.159627 ACGATGTTGCGGATCTTGAAAC 59.840 45.455 0.00 0.00 35.12 2.78
237 238 2.416547 CGATGTTGCGGATCTTGAAACT 59.583 45.455 9.73 0.00 0.00 2.66
238 239 3.616821 CGATGTTGCGGATCTTGAAACTA 59.383 43.478 9.73 0.13 0.00 2.24
239 240 4.259970 CGATGTTGCGGATCTTGAAACTAG 60.260 45.833 9.73 0.00 0.00 2.57
240 241 3.334691 TGTTGCGGATCTTGAAACTAGG 58.665 45.455 9.73 0.00 0.00 3.02
241 242 3.244422 TGTTGCGGATCTTGAAACTAGGT 60.244 43.478 9.73 0.00 0.00 3.08
242 243 4.020928 TGTTGCGGATCTTGAAACTAGGTA 60.021 41.667 9.73 0.00 0.00 3.08
243 244 5.116882 GTTGCGGATCTTGAAACTAGGTAT 58.883 41.667 0.00 0.00 0.00 2.73
244 245 4.945246 TGCGGATCTTGAAACTAGGTATC 58.055 43.478 0.00 0.00 0.00 2.24
245 246 4.649674 TGCGGATCTTGAAACTAGGTATCT 59.350 41.667 0.00 0.00 0.00 1.98
246 247 5.128827 TGCGGATCTTGAAACTAGGTATCTT 59.871 40.000 0.00 0.00 0.00 2.40
247 248 5.463724 GCGGATCTTGAAACTAGGTATCTTG 59.536 44.000 0.00 0.00 0.00 3.02
248 249 6.683110 GCGGATCTTGAAACTAGGTATCTTGA 60.683 42.308 0.00 0.00 0.00 3.02
249 250 6.697892 CGGATCTTGAAACTAGGTATCTTGAC 59.302 42.308 0.00 0.00 0.00 3.18
250 251 7.556844 GGATCTTGAAACTAGGTATCTTGACA 58.443 38.462 0.00 0.00 0.00 3.58
251 252 8.041323 GGATCTTGAAACTAGGTATCTTGACAA 58.959 37.037 0.00 0.00 0.00 3.18
252 253 9.606631 GATCTTGAAACTAGGTATCTTGACAAT 57.393 33.333 0.00 0.00 0.00 2.71
253 254 8.777865 TCTTGAAACTAGGTATCTTGACAATG 57.222 34.615 0.00 0.00 0.00 2.82
254 255 7.824289 TCTTGAAACTAGGTATCTTGACAATGG 59.176 37.037 0.00 0.00 0.00 3.16
255 256 7.252612 TGAAACTAGGTATCTTGACAATGGA 57.747 36.000 0.00 0.00 0.00 3.41
256 257 7.861629 TGAAACTAGGTATCTTGACAATGGAT 58.138 34.615 0.00 0.00 0.00 3.41
257 258 8.328758 TGAAACTAGGTATCTTGACAATGGATT 58.671 33.333 0.00 0.00 0.00 3.01
258 259 8.738645 AAACTAGGTATCTTGACAATGGATTC 57.261 34.615 0.00 0.00 0.00 2.52
259 260 7.437713 ACTAGGTATCTTGACAATGGATTCA 57.562 36.000 0.00 0.00 0.00 2.57
260 261 7.861629 ACTAGGTATCTTGACAATGGATTCAA 58.138 34.615 0.00 0.00 0.00 2.69
261 262 8.497745 ACTAGGTATCTTGACAATGGATTCAAT 58.502 33.333 0.00 0.00 31.41 2.57
262 263 7.814264 AGGTATCTTGACAATGGATTCAATC 57.186 36.000 0.00 0.00 31.41 2.67
263 264 7.580910 AGGTATCTTGACAATGGATTCAATCT 58.419 34.615 0.00 0.00 31.41 2.40
264 265 7.718753 AGGTATCTTGACAATGGATTCAATCTC 59.281 37.037 0.00 0.00 31.41 2.75
265 266 6.956202 ATCTTGACAATGGATTCAATCTCC 57.044 37.500 0.00 0.00 31.41 3.71
266 267 4.877823 TCTTGACAATGGATTCAATCTCCG 59.122 41.667 0.00 0.00 35.41 4.63
267 268 3.544684 TGACAATGGATTCAATCTCCGG 58.455 45.455 0.00 0.00 35.41 5.14
268 269 3.054434 TGACAATGGATTCAATCTCCGGT 60.054 43.478 0.00 0.00 35.41 5.28
269 270 3.545703 ACAATGGATTCAATCTCCGGTC 58.454 45.455 0.00 0.00 35.41 4.79
270 271 2.880890 CAATGGATTCAATCTCCGGTCC 59.119 50.000 0.00 0.00 35.41 4.46
271 272 0.837272 TGGATTCAATCTCCGGTCCC 59.163 55.000 0.00 0.00 35.41 4.46
272 273 0.108774 GGATTCAATCTCCGGTCCCC 59.891 60.000 0.00 0.00 0.00 4.81
273 274 0.837272 GATTCAATCTCCGGTCCCCA 59.163 55.000 0.00 0.00 0.00 4.96
274 275 0.839946 ATTCAATCTCCGGTCCCCAG 59.160 55.000 0.00 0.00 0.00 4.45
275 276 1.910580 TTCAATCTCCGGTCCCCAGC 61.911 60.000 0.00 0.00 0.00 4.85
276 277 3.470888 AATCTCCGGTCCCCAGCG 61.471 66.667 0.00 0.00 43.40 5.18
294 295 2.753043 GCCCGTGTCCGAGGAGTA 60.753 66.667 0.00 0.00 35.63 2.59
295 296 2.772691 GCCCGTGTCCGAGGAGTAG 61.773 68.421 0.00 0.00 35.63 2.57
296 297 2.772691 CCCGTGTCCGAGGAGTAGC 61.773 68.421 0.00 0.00 35.63 3.58
297 298 2.044555 CCGTGTCCGAGGAGTAGCA 61.045 63.158 0.00 0.00 35.63 3.49
298 299 1.136984 CGTGTCCGAGGAGTAGCAC 59.863 63.158 0.00 0.00 35.63 4.40
299 300 1.511768 GTGTCCGAGGAGTAGCACC 59.488 63.158 0.00 0.00 0.00 5.01
300 301 2.044555 TGTCCGAGGAGTAGCACCG 61.045 63.158 0.00 0.00 0.00 4.94
301 302 2.439701 TCCGAGGAGTAGCACCGG 60.440 66.667 0.00 0.00 41.36 5.28
302 303 2.439701 CCGAGGAGTAGCACCGGA 60.440 66.667 9.46 0.00 42.49 5.14
303 304 2.482333 CCGAGGAGTAGCACCGGAG 61.482 68.421 9.46 0.00 42.49 4.63
304 305 2.809010 GAGGAGTAGCACCGGAGC 59.191 66.667 16.88 16.88 0.00 4.70
305 306 2.037367 AGGAGTAGCACCGGAGCA 59.963 61.111 26.04 9.17 36.85 4.26
306 307 2.184579 GGAGTAGCACCGGAGCAC 59.815 66.667 26.04 19.71 36.85 4.40
307 308 2.184579 GAGTAGCACCGGAGCACC 59.815 66.667 26.04 14.91 36.85 5.01
375 376 1.815003 TGCTTGGATGATCACGGCG 60.815 57.895 4.80 4.80 0.00 6.46
394 395 1.450531 GATGCTCCAATGAAGGCCCG 61.451 60.000 0.00 0.00 0.00 6.13
396 397 1.152881 GCTCCAATGAAGGCCCGAT 60.153 57.895 0.00 0.00 0.00 4.18
456 457 0.108377 TAGTGTTGCGACGATGGCAT 60.108 50.000 0.00 0.00 40.62 4.40
469 470 2.368439 GATGGCATGGCTGTTTCTACA 58.632 47.619 21.08 0.00 0.00 2.74
470 471 2.284754 TGGCATGGCTGTTTCTACAA 57.715 45.000 21.08 0.00 32.92 2.41
471 472 2.806434 TGGCATGGCTGTTTCTACAAT 58.194 42.857 21.08 0.00 32.92 2.71
472 473 3.961849 TGGCATGGCTGTTTCTACAATA 58.038 40.909 21.08 0.00 32.92 1.90
473 474 3.694072 TGGCATGGCTGTTTCTACAATAC 59.306 43.478 21.08 0.00 32.92 1.89
474 475 3.947834 GGCATGGCTGTTTCTACAATACT 59.052 43.478 12.86 0.00 32.92 2.12
475 476 5.123227 GGCATGGCTGTTTCTACAATACTA 58.877 41.667 12.86 0.00 32.92 1.82
476 477 5.007724 GGCATGGCTGTTTCTACAATACTAC 59.992 44.000 12.86 0.00 32.92 2.73
477 478 5.276868 GCATGGCTGTTTCTACAATACTACG 60.277 44.000 0.00 0.00 32.92 3.51
478 479 5.648178 TGGCTGTTTCTACAATACTACGA 57.352 39.130 0.00 0.00 32.92 3.43
479 480 6.216801 TGGCTGTTTCTACAATACTACGAT 57.783 37.500 0.00 0.00 32.92 3.73
480 481 6.040247 TGGCTGTTTCTACAATACTACGATG 58.960 40.000 0.00 0.00 32.92 3.84
481 482 5.462398 GGCTGTTTCTACAATACTACGATGG 59.538 44.000 0.00 0.00 32.92 3.51
482 483 5.050972 GCTGTTTCTACAATACTACGATGGC 60.051 44.000 0.00 0.00 32.92 4.40
483 484 5.968254 TGTTTCTACAATACTACGATGGCA 58.032 37.500 0.00 0.00 0.00 4.92
484 485 6.040247 TGTTTCTACAATACTACGATGGCAG 58.960 40.000 0.00 0.00 0.00 4.85
485 486 4.848562 TCTACAATACTACGATGGCAGG 57.151 45.455 0.00 0.00 0.00 4.85
486 487 2.240493 ACAATACTACGATGGCAGGC 57.760 50.000 0.00 0.00 0.00 4.85
487 488 1.202651 ACAATACTACGATGGCAGGCC 60.203 52.381 2.62 2.62 0.00 5.19
497 498 4.704833 GGCAGGCCAGCTTCGACA 62.705 66.667 20.55 0.00 35.81 4.35
539 540 1.088340 CAGAGGCGTCAAGGATGCTG 61.088 60.000 9.41 0.00 43.35 4.41
577 578 1.089920 CCAAGCAAATCAGGACTCCG 58.910 55.000 0.00 0.00 0.00 4.63
609 610 5.918576 GCTAGTACCAAATTCAACAAACACC 59.081 40.000 0.00 0.00 0.00 4.16
649 650 6.586844 TGTTATTTTTAATGCCGTTTAGTGCC 59.413 34.615 0.00 0.00 0.00 5.01
702 703 2.547913 CGTGCATGTGTAGGTACGTA 57.452 50.000 0.00 0.00 40.82 3.57
787 926 5.011982 TCCTATGGAAATCGGATCCTAGT 57.988 43.478 10.75 0.00 37.85 2.57
788 927 5.403512 TCCTATGGAAATCGGATCCTAGTT 58.596 41.667 10.75 4.10 37.85 2.24
789 928 5.844516 TCCTATGGAAATCGGATCCTAGTTT 59.155 40.000 10.75 7.80 37.85 2.66
790 929 5.934625 CCTATGGAAATCGGATCCTAGTTTG 59.065 44.000 10.75 0.00 37.85 2.93
791 930 4.837093 TGGAAATCGGATCCTAGTTTGT 57.163 40.909 10.75 0.00 37.85 2.83
792 931 5.174037 TGGAAATCGGATCCTAGTTTGTT 57.826 39.130 10.75 0.00 37.85 2.83
793 932 5.566469 TGGAAATCGGATCCTAGTTTGTTT 58.434 37.500 10.75 0.00 37.85 2.83
842 985 4.156008 GTGGGATGTGACTTGTATTCCAAC 59.844 45.833 0.00 0.00 31.44 3.77
853 996 5.422970 ACTTGTATTCCAACCGTATAGTGGA 59.577 40.000 0.00 0.00 0.00 4.02
855 998 4.957954 TGTATTCCAACCGTATAGTGGACT 59.042 41.667 0.00 0.00 0.00 3.85
856 999 4.667519 ATTCCAACCGTATAGTGGACTC 57.332 45.455 0.00 0.00 0.00 3.36
857 1000 2.381911 TCCAACCGTATAGTGGACTCC 58.618 52.381 0.00 0.00 0.00 3.85
858 1001 2.024655 TCCAACCGTATAGTGGACTCCT 60.025 50.000 0.00 0.00 0.00 3.69
859 1002 3.202818 TCCAACCGTATAGTGGACTCCTA 59.797 47.826 0.00 0.00 0.00 2.94
860 1003 3.956199 CCAACCGTATAGTGGACTCCTAA 59.044 47.826 0.00 0.00 0.00 2.69
871 1014 2.037251 TGGACTCCTAATCCTAATGCGC 59.963 50.000 0.00 0.00 37.13 6.09
874 1017 4.127171 GACTCCTAATCCTAATGCGCAAA 58.873 43.478 17.11 4.61 0.00 3.68
899 1042 0.624254 TCCTTCCCTGAGACGAGCTA 59.376 55.000 0.00 0.00 0.00 3.32
900 1043 1.215673 TCCTTCCCTGAGACGAGCTAT 59.784 52.381 0.00 0.00 0.00 2.97
934 1078 3.987868 GGATCAATATAAAGCAGCGACGA 59.012 43.478 0.00 0.00 0.00 4.20
935 1079 4.143305 GGATCAATATAAAGCAGCGACGAC 60.143 45.833 0.00 0.00 0.00 4.34
936 1080 2.787129 TCAATATAAAGCAGCGACGACG 59.213 45.455 2.12 2.12 42.93 5.12
947 1091 3.104766 GACGACGGTCGCCATAGA 58.895 61.111 28.67 0.00 45.12 1.98
1038 1490 3.730761 CTGCTGCTGGTGGCGTTC 61.731 66.667 0.00 0.00 45.43 3.95
1050 1502 3.649986 GCGTTCACGGCACTGCTT 61.650 61.111 0.00 0.00 40.23 3.91
1059 1511 2.715005 GCACTGCTTGCGTTGACA 59.285 55.556 0.00 0.00 42.79 3.58
1083 1541 0.672401 CGGCGGAGTACAATGTGGTT 60.672 55.000 0.00 0.00 0.00 3.67
1095 1553 2.356553 GTGGTTGACTACGGCGCA 60.357 61.111 10.83 0.00 0.00 6.09
1164 1622 2.638719 GCAGCGTGCAATGACACA 59.361 55.556 0.00 0.00 44.26 3.72
1316 1774 2.047274 GCCGGCACTAGACAGCAA 60.047 61.111 24.80 0.00 0.00 3.91
1401 1859 1.078426 GCAGGAGTATTGGGCGTGT 60.078 57.895 0.00 0.00 0.00 4.49
1422 1886 1.154225 GAAGGTCGGCAATTGCACG 60.154 57.895 30.32 27.69 44.36 5.34
1425 1889 3.361977 GTCGGCAATTGCACGGGT 61.362 61.111 30.32 0.00 44.36 5.28
1465 1940 6.963796 AGTGATGACATGAACTTCTTGTTTC 58.036 36.000 10.72 10.99 39.30 2.78
1466 1941 6.769822 AGTGATGACATGAACTTCTTGTTTCT 59.230 34.615 10.72 1.40 39.30 2.52
1467 1942 7.284034 AGTGATGACATGAACTTCTTGTTTCTT 59.716 33.333 10.72 0.36 39.30 2.52
1468 1943 7.589221 GTGATGACATGAACTTCTTGTTTCTTC 59.411 37.037 10.72 7.91 39.30 2.87
1469 1944 7.500227 TGATGACATGAACTTCTTGTTTCTTCT 59.500 33.333 10.72 0.00 39.30 2.85
1470 1945 7.630242 TGACATGAACTTCTTGTTTCTTCTT 57.370 32.000 10.72 0.00 39.30 2.52
1471 1946 7.697691 TGACATGAACTTCTTGTTTCTTCTTC 58.302 34.615 10.72 0.00 39.30 2.87
1472 1947 7.554118 TGACATGAACTTCTTGTTTCTTCTTCT 59.446 33.333 10.72 0.00 39.30 2.85
1473 1948 8.286191 ACATGAACTTCTTGTTTCTTCTTCTT 57.714 30.769 0.00 0.00 39.30 2.52
1474 1949 8.743714 ACATGAACTTCTTGTTTCTTCTTCTTT 58.256 29.630 0.00 0.00 39.30 2.52
1475 1950 9.578439 CATGAACTTCTTGTTTCTTCTTCTTTT 57.422 29.630 0.00 0.00 39.30 2.27
1477 1952 9.626045 TGAACTTCTTGTTTCTTCTTCTTTTTC 57.374 29.630 0.00 0.00 39.30 2.29
1662 2145 2.220586 TGACGGTCCAAGGCATCCA 61.221 57.895 5.55 0.00 0.00 3.41
1801 2284 3.832704 CACCTCCAACGTGCTCATA 57.167 52.632 0.00 0.00 0.00 2.15
1840 2323 4.408821 GGCCACGGCATCAGGTGA 62.409 66.667 10.83 0.00 44.11 4.02
1892 2384 1.001293 TGTGTTTGCTTGTGGTTTGCA 59.999 42.857 0.00 0.00 34.69 4.08
1913 2411 4.557301 GCACAACGTAATAGCATTGGTTTC 59.443 41.667 0.00 0.00 0.00 2.78
1926 2424 5.048083 AGCATTGGTTTCGTGTATTCATTGT 60.048 36.000 0.00 0.00 0.00 2.71
1930 2428 5.874831 TGGTTTCGTGTATTCATTGTATGC 58.125 37.500 0.00 0.00 0.00 3.14
2211 2753 4.345859 TTCAAGTTCCCTACACGTCAAT 57.654 40.909 0.00 0.00 0.00 2.57
2217 2766 1.760613 TCCCTACACGTCAATCCATCC 59.239 52.381 0.00 0.00 0.00 3.51
2237 2788 2.223595 CCGTCGACTGTATCATGAGCTT 60.224 50.000 14.70 0.00 0.00 3.74
2377 2928 2.467826 GCAGCGGGATCAAGCTCAC 61.468 63.158 10.68 3.95 42.52 3.51
2391 2942 1.009829 GCTCACGAACATTAGGCTGG 58.990 55.000 0.00 0.00 0.00 4.85
2492 7362 1.272781 GCTTCTGACGATCGGAGTTG 58.727 55.000 20.98 11.99 32.62 3.16
2540 7410 6.436532 AGCATCTTCTTGATTTGATGGTTTCT 59.563 34.615 0.00 0.00 42.56 2.52
2541 7411 6.530534 GCATCTTCTTGATTTGATGGTTTCTG 59.469 38.462 0.00 0.00 37.40 3.02
2542 7412 7.600065 CATCTTCTTGATTTGATGGTTTCTGT 58.400 34.615 0.00 0.00 34.40 3.41
2543 7413 8.733458 CATCTTCTTGATTTGATGGTTTCTGTA 58.267 33.333 0.00 0.00 34.40 2.74
2544 7414 8.690203 TCTTCTTGATTTGATGGTTTCTGTAA 57.310 30.769 0.00 0.00 0.00 2.41
2545 7415 9.300681 TCTTCTTGATTTGATGGTTTCTGTAAT 57.699 29.630 0.00 0.00 0.00 1.89
2548 7418 9.739276 TCTTGATTTGATGGTTTCTGTAATAGT 57.261 29.630 0.00 0.00 0.00 2.12
2553 7423 8.810652 TTTGATGGTTTCTGTAATAGTTTTGC 57.189 30.769 0.00 0.00 0.00 3.68
2554 7424 7.759489 TGATGGTTTCTGTAATAGTTTTGCT 57.241 32.000 0.00 0.00 0.00 3.91
2555 7425 8.856153 TGATGGTTTCTGTAATAGTTTTGCTA 57.144 30.769 0.00 0.00 0.00 3.49
2556 7426 9.290988 TGATGGTTTCTGTAATAGTTTTGCTAA 57.709 29.630 0.00 0.00 32.72 3.09
2557 7427 9.774742 GATGGTTTCTGTAATAGTTTTGCTAAG 57.225 33.333 0.00 0.00 32.72 2.18
2558 7428 8.685838 TGGTTTCTGTAATAGTTTTGCTAAGT 57.314 30.769 0.00 0.00 32.72 2.24
2559 7429 8.780249 TGGTTTCTGTAATAGTTTTGCTAAGTC 58.220 33.333 0.00 0.00 32.72 3.01
2560 7430 8.780249 GGTTTCTGTAATAGTTTTGCTAAGTCA 58.220 33.333 0.00 0.00 32.72 3.41
2566 7436 9.297586 TGTAATAGTTTTGCTAAGTCATAGTCG 57.702 33.333 0.00 0.00 33.87 4.18
2567 7437 9.512435 GTAATAGTTTTGCTAAGTCATAGTCGA 57.488 33.333 0.00 0.00 33.87 4.20
2568 7438 7.988904 ATAGTTTTGCTAAGTCATAGTCGAC 57.011 36.000 7.70 7.70 33.87 4.20
2586 7456 5.867166 GTCGACTTAGACTTCGTTATGTCT 58.133 41.667 8.70 0.00 44.56 3.41
2587 7457 5.958949 GTCGACTTAGACTTCGTTATGTCTC 59.041 44.000 8.70 0.00 41.92 3.36
2588 7458 5.640783 TCGACTTAGACTTCGTTATGTCTCA 59.359 40.000 0.00 0.00 41.92 3.27
2589 7459 5.960683 CGACTTAGACTTCGTTATGTCTCAG 59.039 44.000 0.00 0.00 41.92 3.35
2590 7460 6.402334 CGACTTAGACTTCGTTATGTCTCAGT 60.402 42.308 8.97 8.97 45.06 3.41
2591 7461 6.844254 ACTTAGACTTCGTTATGTCTCAGTC 58.156 40.000 0.00 0.00 41.23 3.51
2592 7462 4.343811 AGACTTCGTTATGTCTCAGTCG 57.656 45.455 0.00 0.00 39.04 4.18
2593 7463 4.001652 AGACTTCGTTATGTCTCAGTCGA 58.998 43.478 0.00 0.00 39.04 4.20
2594 7464 4.636648 AGACTTCGTTATGTCTCAGTCGAT 59.363 41.667 0.00 0.00 39.04 3.59
2595 7465 5.816258 AGACTTCGTTATGTCTCAGTCGATA 59.184 40.000 0.00 0.00 39.04 2.92
2596 7466 6.018588 AGACTTCGTTATGTCTCAGTCGATAG 60.019 42.308 0.00 0.00 39.04 2.08
2597 7467 5.585445 ACTTCGTTATGTCTCAGTCGATAGT 59.415 40.000 0.00 0.00 37.40 2.12
2598 7468 6.760298 ACTTCGTTATGTCTCAGTCGATAGTA 59.240 38.462 0.00 0.00 37.40 1.82
2599 7469 7.441760 ACTTCGTTATGTCTCAGTCGATAGTAT 59.558 37.037 0.00 0.00 37.40 2.12
2600 7470 7.725818 TCGTTATGTCTCAGTCGATAGTATT 57.274 36.000 0.00 0.00 37.40 1.89
2601 7471 8.151141 TCGTTATGTCTCAGTCGATAGTATTT 57.849 34.615 0.00 0.00 37.40 1.40
2602 7472 8.618677 TCGTTATGTCTCAGTCGATAGTATTTT 58.381 33.333 0.00 0.00 37.40 1.82
2603 7473 8.682895 CGTTATGTCTCAGTCGATAGTATTTTG 58.317 37.037 0.00 0.00 37.40 2.44
2604 7474 8.480853 GTTATGTCTCAGTCGATAGTATTTTGC 58.519 37.037 0.00 0.00 37.40 3.68
2605 7475 6.208988 TGTCTCAGTCGATAGTATTTTGCT 57.791 37.500 0.00 0.00 37.40 3.91
2606 7476 6.631016 TGTCTCAGTCGATAGTATTTTGCTT 58.369 36.000 0.00 0.00 37.40 3.91
2607 7477 7.097192 TGTCTCAGTCGATAGTATTTTGCTTT 58.903 34.615 0.00 0.00 37.40 3.51
2608 7478 7.063426 TGTCTCAGTCGATAGTATTTTGCTTTG 59.937 37.037 0.00 0.00 37.40 2.77
2609 7479 7.275779 GTCTCAGTCGATAGTATTTTGCTTTGA 59.724 37.037 0.00 0.00 37.40 2.69
2610 7480 7.981789 TCTCAGTCGATAGTATTTTGCTTTGAT 59.018 33.333 0.00 0.00 37.40 2.57
2611 7481 8.492673 TCAGTCGATAGTATTTTGCTTTGATT 57.507 30.769 0.00 0.00 37.40 2.57
2612 7482 8.946085 TCAGTCGATAGTATTTTGCTTTGATTT 58.054 29.630 0.00 0.00 37.40 2.17
2613 7483 9.559958 CAGTCGATAGTATTTTGCTTTGATTTT 57.440 29.630 0.00 0.00 37.40 1.82
2614 7484 9.559958 AGTCGATAGTATTTTGCTTTGATTTTG 57.440 29.630 0.00 0.00 37.40 2.44
2615 7485 8.313931 GTCGATAGTATTTTGCTTTGATTTTGC 58.686 33.333 0.00 0.00 37.40 3.68
2616 7486 8.026026 TCGATAGTATTTTGCTTTGATTTTGCA 58.974 29.630 0.00 0.00 34.07 4.08
2617 7487 8.810427 CGATAGTATTTTGCTTTGATTTTGCAT 58.190 29.630 0.00 0.00 36.55 3.96
2618 7488 9.910511 GATAGTATTTTGCTTTGATTTTGCATG 57.089 29.630 0.00 0.00 36.55 4.06
2619 7489 7.136289 AGTATTTTGCTTTGATTTTGCATGG 57.864 32.000 0.00 0.00 36.55 3.66
2620 7490 6.935771 AGTATTTTGCTTTGATTTTGCATGGA 59.064 30.769 0.00 0.00 36.55 3.41
2621 7491 5.676532 TTTTGCTTTGATTTTGCATGGAG 57.323 34.783 0.00 0.00 36.55 3.86
2622 7492 4.603989 TTGCTTTGATTTTGCATGGAGA 57.396 36.364 0.00 0.00 36.55 3.71
2623 7493 4.811969 TGCTTTGATTTTGCATGGAGAT 57.188 36.364 0.00 0.00 0.00 2.75
2624 7494 5.155278 TGCTTTGATTTTGCATGGAGATT 57.845 34.783 0.00 0.00 0.00 2.40
2625 7495 5.172934 TGCTTTGATTTTGCATGGAGATTC 58.827 37.500 0.00 0.00 0.00 2.52
2626 7496 4.266976 GCTTTGATTTTGCATGGAGATTCG 59.733 41.667 0.00 0.00 0.00 3.34
2627 7497 5.389859 TTTGATTTTGCATGGAGATTCGT 57.610 34.783 0.00 0.00 0.00 3.85
2628 7498 4.359971 TGATTTTGCATGGAGATTCGTG 57.640 40.909 0.00 0.00 0.00 4.35
2629 7499 2.634982 TTTTGCATGGAGATTCGTGC 57.365 45.000 0.00 0.00 46.61 5.34
2633 7503 2.634982 GCATGGAGATTCGTGCAAAA 57.365 45.000 0.23 0.00 45.94 2.44
2634 7504 2.945278 GCATGGAGATTCGTGCAAAAA 58.055 42.857 0.23 0.00 45.94 1.94
2679 7549 9.515226 TTTTTCTTCTTACATACCATAGCACTT 57.485 29.630 0.00 0.00 0.00 3.16
2680 7550 8.492673 TTTCTTCTTACATACCATAGCACTTG 57.507 34.615 0.00 0.00 0.00 3.16
2681 7551 7.418337 TCTTCTTACATACCATAGCACTTGA 57.582 36.000 0.00 0.00 0.00 3.02
2682 7552 7.265673 TCTTCTTACATACCATAGCACTTGAC 58.734 38.462 0.00 0.00 0.00 3.18
2683 7553 6.791867 TCTTACATACCATAGCACTTGACT 57.208 37.500 0.00 0.00 0.00 3.41
2684 7554 7.182817 TCTTACATACCATAGCACTTGACTT 57.817 36.000 0.00 0.00 0.00 3.01
2685 7555 8.301252 TCTTACATACCATAGCACTTGACTTA 57.699 34.615 0.00 0.00 0.00 2.24
2686 7556 8.414003 TCTTACATACCATAGCACTTGACTTAG 58.586 37.037 0.00 0.00 0.00 2.18
2687 7557 6.791867 ACATACCATAGCACTTGACTTAGA 57.208 37.500 0.00 0.00 0.00 2.10
2688 7558 6.574350 ACATACCATAGCACTTGACTTAGAC 58.426 40.000 0.00 0.00 0.00 2.59
2689 7559 6.381420 ACATACCATAGCACTTGACTTAGACT 59.619 38.462 0.00 0.00 0.00 3.24
2690 7560 5.746990 ACCATAGCACTTGACTTAGACTT 57.253 39.130 0.00 0.00 0.00 3.01
2691 7561 5.482908 ACCATAGCACTTGACTTAGACTTG 58.517 41.667 0.00 0.00 0.00 3.16
2692 7562 4.872691 CCATAGCACTTGACTTAGACTTGG 59.127 45.833 0.00 0.00 0.00 3.61
2693 7563 5.482908 CATAGCACTTGACTTAGACTTGGT 58.517 41.667 0.00 0.00 0.00 3.67
2694 7564 4.423625 AGCACTTGACTTAGACTTGGTT 57.576 40.909 0.00 0.00 0.00 3.67
2695 7565 5.546621 AGCACTTGACTTAGACTTGGTTA 57.453 39.130 0.00 0.00 0.00 2.85
2696 7566 5.925509 AGCACTTGACTTAGACTTGGTTAA 58.074 37.500 0.00 0.00 0.00 2.01
2697 7567 5.992217 AGCACTTGACTTAGACTTGGTTAAG 59.008 40.000 9.08 9.08 39.86 1.85
2709 7579 5.470047 ACTTGGTTAAGTCTCAGTCGATT 57.530 39.130 0.00 0.00 43.53 3.34
2710 7580 6.585695 ACTTGGTTAAGTCTCAGTCGATTA 57.414 37.500 0.00 0.00 43.53 1.75
2711 7581 6.989659 ACTTGGTTAAGTCTCAGTCGATTAA 58.010 36.000 0.00 0.00 43.53 1.40
2712 7582 7.091443 ACTTGGTTAAGTCTCAGTCGATTAAG 58.909 38.462 0.00 0.00 43.53 1.85
2713 7583 6.829229 TGGTTAAGTCTCAGTCGATTAAGA 57.171 37.500 0.00 0.00 0.00 2.10
2714 7584 6.618811 TGGTTAAGTCTCAGTCGATTAAGAC 58.381 40.000 3.05 3.05 41.23 3.01
2715 7585 6.035217 GGTTAAGTCTCAGTCGATTAAGACC 58.965 44.000 7.56 0.00 41.83 3.85
2716 7586 6.127675 GGTTAAGTCTCAGTCGATTAAGACCT 60.128 42.308 7.56 0.00 41.83 3.85
2717 7587 7.066766 GGTTAAGTCTCAGTCGATTAAGACCTA 59.933 40.741 7.56 0.00 41.83 3.08
2718 7588 8.457261 GTTAAGTCTCAGTCGATTAAGACCTAA 58.543 37.037 7.56 3.29 41.83 2.69
2719 7589 6.439675 AGTCTCAGTCGATTAAGACCTAAC 57.560 41.667 7.56 0.00 41.83 2.34
2720 7590 5.357596 AGTCTCAGTCGATTAAGACCTAACC 59.642 44.000 7.56 0.00 41.83 2.85
2721 7591 5.125097 GTCTCAGTCGATTAAGACCTAACCA 59.875 44.000 0.00 0.00 41.83 3.67
2722 7592 5.125097 TCTCAGTCGATTAAGACCTAACCAC 59.875 44.000 0.00 0.00 41.83 4.16
2723 7593 4.768448 TCAGTCGATTAAGACCTAACCACA 59.232 41.667 0.00 0.00 41.83 4.17
2724 7594 4.863131 CAGTCGATTAAGACCTAACCACAC 59.137 45.833 0.00 0.00 41.83 3.82
2725 7595 4.081807 AGTCGATTAAGACCTAACCACACC 60.082 45.833 0.00 0.00 41.83 4.16
2726 7596 3.196254 TCGATTAAGACCTAACCACACCC 59.804 47.826 0.00 0.00 0.00 4.61
2727 7597 3.197116 CGATTAAGACCTAACCACACCCT 59.803 47.826 0.00 0.00 0.00 4.34
2728 7598 4.323257 CGATTAAGACCTAACCACACCCTT 60.323 45.833 0.00 0.00 0.00 3.95
2766 7672 2.795121 GCACAGTTGCGTAAGATCAG 57.205 50.000 0.00 0.00 39.50 2.90
2812 7722 3.507233 TCATTGCTTGGTGGATCTCAAAC 59.493 43.478 0.00 0.00 0.00 2.93
3021 7934 3.306364 GCGTATAGGTCTACGGGAGTCTA 60.306 52.174 5.87 0.00 45.66 2.59
3029 7942 2.106166 TCTACGGGAGTCTAGATGTCCC 59.894 54.545 24.37 24.37 45.91 4.46
3138 8069 3.415212 CTCACCAAGAGCAGAAATTCCA 58.585 45.455 0.00 0.00 37.59 3.53
3139 8070 3.822735 CTCACCAAGAGCAGAAATTCCAA 59.177 43.478 0.00 0.00 37.59 3.53
3140 8071 4.410099 TCACCAAGAGCAGAAATTCCAAT 58.590 39.130 0.00 0.00 0.00 3.16
3190 8122 4.036518 AGAGGCCTATGTCATCTTTGTCT 58.963 43.478 4.42 0.00 0.00 3.41
3410 8565 3.612423 GCGAGTGGCATGGAAAAATTAAC 59.388 43.478 0.00 0.00 42.87 2.01
3429 8584 9.734984 AAATTAACTAGGCTTAGTTTAGCAGAA 57.265 29.630 24.25 12.87 45.57 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 3.683365 ATTGTTGTTTCAGGGCAATCC 57.317 42.857 0.00 0.00 0.00 3.01
10 11 5.132897 TGTATTGTTGTTTCAGGGCAATC 57.867 39.130 0.00 0.00 32.79 2.67
11 12 5.245751 TGATGTATTGTTGTTTCAGGGCAAT 59.754 36.000 0.00 0.00 34.62 3.56
12 13 4.586421 TGATGTATTGTTGTTTCAGGGCAA 59.414 37.500 0.00 0.00 0.00 4.52
13 14 4.148079 TGATGTATTGTTGTTTCAGGGCA 58.852 39.130 0.00 0.00 0.00 5.36
14 15 4.782019 TGATGTATTGTTGTTTCAGGGC 57.218 40.909 0.00 0.00 0.00 5.19
15 16 6.573664 TCTTGATGTATTGTTGTTTCAGGG 57.426 37.500 0.00 0.00 0.00 4.45
16 17 8.870160 TTTTCTTGATGTATTGTTGTTTCAGG 57.130 30.769 0.00 0.00 0.00 3.86
17 18 8.482429 GCTTTTCTTGATGTATTGTTGTTTCAG 58.518 33.333 0.00 0.00 0.00 3.02
18 19 7.437862 GGCTTTTCTTGATGTATTGTTGTTTCA 59.562 33.333 0.00 0.00 0.00 2.69
19 20 7.358352 CGGCTTTTCTTGATGTATTGTTGTTTC 60.358 37.037 0.00 0.00 0.00 2.78
20 21 6.420604 CGGCTTTTCTTGATGTATTGTTGTTT 59.579 34.615 0.00 0.00 0.00 2.83
21 22 5.920273 CGGCTTTTCTTGATGTATTGTTGTT 59.080 36.000 0.00 0.00 0.00 2.83
22 23 5.240623 TCGGCTTTTCTTGATGTATTGTTGT 59.759 36.000 0.00 0.00 0.00 3.32
23 24 5.698832 TCGGCTTTTCTTGATGTATTGTTG 58.301 37.500 0.00 0.00 0.00 3.33
24 25 5.957842 TCGGCTTTTCTTGATGTATTGTT 57.042 34.783 0.00 0.00 0.00 2.83
25 26 6.324819 CAATCGGCTTTTCTTGATGTATTGT 58.675 36.000 0.00 0.00 0.00 2.71
26 27 5.230726 GCAATCGGCTTTTCTTGATGTATTG 59.769 40.000 0.00 0.00 40.25 1.90
27 28 5.343249 GCAATCGGCTTTTCTTGATGTATT 58.657 37.500 0.00 0.00 40.25 1.89
28 29 4.202050 GGCAATCGGCTTTTCTTGATGTAT 60.202 41.667 0.00 0.00 44.01 2.29
29 30 3.128589 GGCAATCGGCTTTTCTTGATGTA 59.871 43.478 0.00 0.00 44.01 2.29
30 31 2.094545 GGCAATCGGCTTTTCTTGATGT 60.095 45.455 0.00 0.00 44.01 3.06
31 32 2.533266 GGCAATCGGCTTTTCTTGATG 58.467 47.619 0.00 0.00 44.01 3.07
32 33 1.478105 GGGCAATCGGCTTTTCTTGAT 59.522 47.619 0.00 0.00 44.01 2.57
33 34 0.887933 GGGCAATCGGCTTTTCTTGA 59.112 50.000 0.00 0.00 44.01 3.02
34 35 0.456653 CGGGCAATCGGCTTTTCTTG 60.457 55.000 0.00 0.00 44.01 3.02
35 36 0.608035 TCGGGCAATCGGCTTTTCTT 60.608 50.000 0.00 0.00 44.01 2.52
36 37 0.394352 ATCGGGCAATCGGCTTTTCT 60.394 50.000 0.00 0.00 44.01 2.52
37 38 0.248621 CATCGGGCAATCGGCTTTTC 60.249 55.000 0.00 0.00 44.01 2.29
38 39 0.679640 TCATCGGGCAATCGGCTTTT 60.680 50.000 0.00 0.00 44.01 2.27
39 40 1.077787 TCATCGGGCAATCGGCTTT 60.078 52.632 0.00 0.00 44.01 3.51
40 41 1.524621 CTCATCGGGCAATCGGCTT 60.525 57.895 0.00 0.00 44.01 4.35
41 42 2.109799 CTCATCGGGCAATCGGCT 59.890 61.111 0.00 0.00 44.01 5.52
42 43 2.108976 TCTCATCGGGCAATCGGC 59.891 61.111 0.00 0.00 43.74 5.54
43 44 1.951130 CGTCTCATCGGGCAATCGG 60.951 63.158 0.00 0.00 0.00 4.18
44 45 2.589492 GCGTCTCATCGGGCAATCG 61.589 63.158 0.00 0.00 0.00 3.34
45 46 2.247437 GGCGTCTCATCGGGCAATC 61.247 63.158 0.00 0.00 0.00 2.67
46 47 2.203070 GGCGTCTCATCGGGCAAT 60.203 61.111 0.00 0.00 0.00 3.56
47 48 4.467084 GGGCGTCTCATCGGGCAA 62.467 66.667 0.00 0.00 0.00 4.52
49 50 4.241555 ATGGGCGTCTCATCGGGC 62.242 66.667 0.00 0.00 0.00 6.13
50 51 2.029666 GATGGGCGTCTCATCGGG 59.970 66.667 4.34 0.00 32.83 5.14
51 52 1.300465 CTGATGGGCGTCTCATCGG 60.300 63.158 12.21 12.21 42.73 4.18
52 53 1.300465 CCTGATGGGCGTCTCATCG 60.300 63.158 12.86 8.80 42.73 3.84
53 54 4.766970 CCTGATGGGCGTCTCATC 57.233 61.111 11.38 11.38 40.85 2.92
62 63 1.586028 CAAACAACCGCCTGATGGG 59.414 57.895 0.00 0.00 38.36 4.00
63 64 1.586028 CCAAACAACCGCCTGATGG 59.414 57.895 0.00 0.00 0.00 3.51
64 65 1.586028 CCCAAACAACCGCCTGATG 59.414 57.895 0.00 0.00 0.00 3.07
65 66 2.275380 GCCCAAACAACCGCCTGAT 61.275 57.895 0.00 0.00 0.00 2.90
66 67 2.058125 TAGCCCAAACAACCGCCTGA 62.058 55.000 0.00 0.00 0.00 3.86
67 68 1.175983 TTAGCCCAAACAACCGCCTG 61.176 55.000 0.00 0.00 0.00 4.85
68 69 0.468400 TTTAGCCCAAACAACCGCCT 60.468 50.000 0.00 0.00 0.00 5.52
69 70 0.606096 ATTTAGCCCAAACAACCGCC 59.394 50.000 0.00 0.00 0.00 6.13
70 71 2.448926 AATTTAGCCCAAACAACCGC 57.551 45.000 0.00 0.00 0.00 5.68
71 72 4.372656 TCAAAATTTAGCCCAAACAACCG 58.627 39.130 0.00 0.00 0.00 4.44
72 73 4.754618 CCTCAAAATTTAGCCCAAACAACC 59.245 41.667 0.00 0.00 0.00 3.77
73 74 5.236263 CACCTCAAAATTTAGCCCAAACAAC 59.764 40.000 0.00 0.00 0.00 3.32
74 75 5.104735 ACACCTCAAAATTTAGCCCAAACAA 60.105 36.000 0.00 0.00 0.00 2.83
75 76 4.407296 ACACCTCAAAATTTAGCCCAAACA 59.593 37.500 0.00 0.00 0.00 2.83
76 77 4.956085 ACACCTCAAAATTTAGCCCAAAC 58.044 39.130 0.00 0.00 0.00 2.93
77 78 4.651503 TGACACCTCAAAATTTAGCCCAAA 59.348 37.500 0.00 0.00 0.00 3.28
78 79 4.038642 GTGACACCTCAAAATTTAGCCCAA 59.961 41.667 0.00 0.00 0.00 4.12
79 80 3.572255 GTGACACCTCAAAATTTAGCCCA 59.428 43.478 0.00 0.00 0.00 5.36
80 81 3.572255 TGTGACACCTCAAAATTTAGCCC 59.428 43.478 2.45 0.00 0.00 5.19
81 82 4.546570 GTGTGACACCTCAAAATTTAGCC 58.453 43.478 3.92 0.00 0.00 3.93
82 83 4.219033 CGTGTGACACCTCAAAATTTAGC 58.781 43.478 10.52 0.00 0.00 3.09
83 84 4.783242 CCGTGTGACACCTCAAAATTTAG 58.217 43.478 10.52 0.00 0.00 1.85
84 85 3.003897 GCCGTGTGACACCTCAAAATTTA 59.996 43.478 10.52 0.00 0.00 1.40
85 86 2.223711 GCCGTGTGACACCTCAAAATTT 60.224 45.455 10.52 0.00 0.00 1.82
86 87 1.336755 GCCGTGTGACACCTCAAAATT 59.663 47.619 10.52 0.00 0.00 1.82
87 88 0.951558 GCCGTGTGACACCTCAAAAT 59.048 50.000 10.52 0.00 0.00 1.82
88 89 0.393132 TGCCGTGTGACACCTCAAAA 60.393 50.000 10.52 0.00 0.00 2.44
89 90 1.092921 GTGCCGTGTGACACCTCAAA 61.093 55.000 10.52 0.00 0.00 2.69
90 91 1.522806 GTGCCGTGTGACACCTCAA 60.523 57.895 10.52 0.00 0.00 3.02
91 92 2.108157 GTGCCGTGTGACACCTCA 59.892 61.111 10.52 5.33 0.00 3.86
92 93 3.036084 CGTGCCGTGTGACACCTC 61.036 66.667 10.52 2.57 33.09 3.85
93 94 3.499929 CTCGTGCCGTGTGACACCT 62.500 63.158 10.52 0.00 33.09 4.00
94 95 3.036084 CTCGTGCCGTGTGACACC 61.036 66.667 10.52 0.00 33.09 4.16
95 96 3.036084 CCTCGTGCCGTGTGACAC 61.036 66.667 5.47 5.47 0.00 3.67
96 97 3.533105 ACCTCGTGCCGTGTGACA 61.533 61.111 0.00 0.00 0.00 3.58
97 98 3.036084 CACCTCGTGCCGTGTGAC 61.036 66.667 11.40 0.00 34.61 3.67
106 107 0.729116 GAATGGACATGCACCTCGTG 59.271 55.000 10.23 0.00 37.70 4.35
107 108 0.615331 AGAATGGACATGCACCTCGT 59.385 50.000 10.23 0.00 0.00 4.18
108 109 2.602257 TAGAATGGACATGCACCTCG 57.398 50.000 10.23 0.00 0.00 4.63
120 121 8.065930 ATCGGATTGATCATGACCATAGAATGG 61.066 40.741 0.00 4.36 44.85 3.16
121 122 6.168389 TCGGATTGATCATGACCATAGAATG 58.832 40.000 0.00 0.00 0.00 2.67
122 123 6.364568 TCGGATTGATCATGACCATAGAAT 57.635 37.500 0.00 0.00 0.00 2.40
123 124 5.806654 TCGGATTGATCATGACCATAGAA 57.193 39.130 0.00 0.00 0.00 2.10
136 137 1.302033 GCGCCTGGATCGGATTGAT 60.302 57.895 0.00 0.00 41.06 2.57
137 138 2.108976 GCGCCTGGATCGGATTGA 59.891 61.111 0.00 0.00 0.00 2.57
138 139 2.203056 TGCGCCTGGATCGGATTG 60.203 61.111 4.18 0.00 0.00 2.67
139 140 2.203070 GTGCGCCTGGATCGGATT 60.203 61.111 4.18 0.00 0.00 3.01
140 141 4.241555 GGTGCGCCTGGATCGGAT 62.242 66.667 9.68 0.00 0.00 4.18
154 155 3.353836 CAAGGCGTGTTCGGGGTG 61.354 66.667 0.00 0.00 37.56 4.61
157 158 3.423154 GAGCAAGGCGTGTTCGGG 61.423 66.667 1.22 0.00 37.56 5.14
160 161 1.347817 CTCTCGAGCAAGGCGTGTTC 61.348 60.000 7.81 7.18 34.28 3.18
161 162 1.373497 CTCTCGAGCAAGGCGTGTT 60.373 57.895 7.81 0.00 0.00 3.32
162 163 2.259818 CTCTCGAGCAAGGCGTGT 59.740 61.111 7.81 0.00 0.00 4.49
172 173 1.365633 GGCATACTGGGCTCTCGAG 59.634 63.158 5.93 5.93 0.00 4.04
173 174 1.381191 TGGCATACTGGGCTCTCGA 60.381 57.895 0.00 0.00 0.00 4.04
174 175 1.227380 GTGGCATACTGGGCTCTCG 60.227 63.158 0.00 0.00 0.00 4.04
175 176 1.147153 GGTGGCATACTGGGCTCTC 59.853 63.158 0.00 0.00 0.00 3.20
176 177 2.378634 GGGTGGCATACTGGGCTCT 61.379 63.158 0.00 0.00 0.00 4.09
177 178 2.193248 GGGTGGCATACTGGGCTC 59.807 66.667 0.00 0.00 0.00 4.70
178 179 3.420482 GGGGTGGCATACTGGGCT 61.420 66.667 0.00 0.00 0.00 5.19
179 180 3.738481 TGGGGTGGCATACTGGGC 61.738 66.667 0.00 0.00 0.00 5.36
180 181 2.275418 GTGGGGTGGCATACTGGG 59.725 66.667 0.00 0.00 0.00 4.45
181 182 2.124736 CGTGGGGTGGCATACTGG 60.125 66.667 0.00 0.00 0.00 4.00
182 183 2.124736 CCGTGGGGTGGCATACTG 60.125 66.667 0.00 0.00 0.00 2.74
200 201 0.963856 ATCGTCTCTGCCGTGGTACA 60.964 55.000 0.00 0.00 0.00 2.90
201 202 0.525668 CATCGTCTCTGCCGTGGTAC 60.526 60.000 0.00 0.00 0.00 3.34
202 203 0.963856 ACATCGTCTCTGCCGTGGTA 60.964 55.000 0.00 0.00 0.00 3.25
203 204 1.816863 AACATCGTCTCTGCCGTGGT 61.817 55.000 0.00 0.00 0.00 4.16
204 205 1.079819 AACATCGTCTCTGCCGTGG 60.080 57.895 0.00 0.00 0.00 4.94
205 206 1.959899 GCAACATCGTCTCTGCCGTG 61.960 60.000 0.00 0.00 0.00 4.94
206 207 1.738099 GCAACATCGTCTCTGCCGT 60.738 57.895 0.00 0.00 0.00 5.68
207 208 2.792290 CGCAACATCGTCTCTGCCG 61.792 63.158 0.00 0.00 0.00 5.69
208 209 2.456119 CCGCAACATCGTCTCTGCC 61.456 63.158 0.00 0.00 0.00 4.85
209 210 0.807667 ATCCGCAACATCGTCTCTGC 60.808 55.000 0.00 0.00 0.00 4.26
210 211 1.202348 AGATCCGCAACATCGTCTCTG 60.202 52.381 0.00 0.00 0.00 3.35
211 212 1.107114 AGATCCGCAACATCGTCTCT 58.893 50.000 0.00 0.00 0.00 3.10
212 213 1.590238 CAAGATCCGCAACATCGTCTC 59.410 52.381 0.00 0.00 0.00 3.36
213 214 1.204704 TCAAGATCCGCAACATCGTCT 59.795 47.619 0.00 0.00 0.00 4.18
214 215 1.640428 TCAAGATCCGCAACATCGTC 58.360 50.000 0.00 0.00 0.00 4.20
215 216 2.093306 TTCAAGATCCGCAACATCGT 57.907 45.000 0.00 0.00 0.00 3.73
216 217 2.416547 AGTTTCAAGATCCGCAACATCG 59.583 45.455 0.00 0.00 0.00 3.84
217 218 4.034510 CCTAGTTTCAAGATCCGCAACATC 59.965 45.833 0.00 0.00 0.00 3.06
218 219 3.941483 CCTAGTTTCAAGATCCGCAACAT 59.059 43.478 0.00 0.00 0.00 2.71
219 220 3.244422 ACCTAGTTTCAAGATCCGCAACA 60.244 43.478 0.00 0.00 0.00 3.33
220 221 3.335579 ACCTAGTTTCAAGATCCGCAAC 58.664 45.455 0.00 0.00 0.00 4.17
221 222 3.695830 ACCTAGTTTCAAGATCCGCAA 57.304 42.857 0.00 0.00 0.00 4.85
222 223 4.649674 AGATACCTAGTTTCAAGATCCGCA 59.350 41.667 0.00 0.00 0.00 5.69
223 224 5.203060 AGATACCTAGTTTCAAGATCCGC 57.797 43.478 0.00 0.00 0.00 5.54
224 225 6.697892 GTCAAGATACCTAGTTTCAAGATCCG 59.302 42.308 0.00 0.00 0.00 4.18
225 226 7.556844 TGTCAAGATACCTAGTTTCAAGATCC 58.443 38.462 0.00 0.00 0.00 3.36
226 227 9.606631 ATTGTCAAGATACCTAGTTTCAAGATC 57.393 33.333 0.00 0.00 0.00 2.75
227 228 9.388506 CATTGTCAAGATACCTAGTTTCAAGAT 57.611 33.333 0.00 0.00 0.00 2.40
228 229 7.824289 CCATTGTCAAGATACCTAGTTTCAAGA 59.176 37.037 0.00 0.00 0.00 3.02
229 230 7.824289 TCCATTGTCAAGATACCTAGTTTCAAG 59.176 37.037 0.00 0.00 0.00 3.02
230 231 7.685481 TCCATTGTCAAGATACCTAGTTTCAA 58.315 34.615 0.00 0.00 0.00 2.69
231 232 7.252612 TCCATTGTCAAGATACCTAGTTTCA 57.747 36.000 0.00 0.00 0.00 2.69
232 233 8.738645 AATCCATTGTCAAGATACCTAGTTTC 57.261 34.615 0.00 0.00 0.00 2.78
233 234 8.328758 TGAATCCATTGTCAAGATACCTAGTTT 58.671 33.333 0.00 0.00 0.00 2.66
234 235 7.861629 TGAATCCATTGTCAAGATACCTAGTT 58.138 34.615 0.00 0.00 0.00 2.24
235 236 7.437713 TGAATCCATTGTCAAGATACCTAGT 57.562 36.000 0.00 0.00 0.00 2.57
236 237 8.915057 ATTGAATCCATTGTCAAGATACCTAG 57.085 34.615 0.00 0.00 37.19 3.02
237 238 8.717717 AGATTGAATCCATTGTCAAGATACCTA 58.282 33.333 0.75 0.00 37.19 3.08
238 239 7.580910 AGATTGAATCCATTGTCAAGATACCT 58.419 34.615 0.75 0.00 37.19 3.08
239 240 7.040823 GGAGATTGAATCCATTGTCAAGATACC 60.041 40.741 0.75 0.00 37.19 2.73
240 241 7.307632 CGGAGATTGAATCCATTGTCAAGATAC 60.308 40.741 0.75 0.00 37.19 2.24
241 242 6.707608 CGGAGATTGAATCCATTGTCAAGATA 59.292 38.462 0.75 0.00 37.19 1.98
242 243 5.530171 CGGAGATTGAATCCATTGTCAAGAT 59.470 40.000 0.75 0.00 37.19 2.40
243 244 4.877823 CGGAGATTGAATCCATTGTCAAGA 59.122 41.667 0.75 0.00 37.19 3.02
244 245 4.036027 CCGGAGATTGAATCCATTGTCAAG 59.964 45.833 0.00 0.00 37.19 3.02
245 246 3.947196 CCGGAGATTGAATCCATTGTCAA 59.053 43.478 0.00 0.00 38.09 3.18
246 247 3.054434 ACCGGAGATTGAATCCATTGTCA 60.054 43.478 9.46 0.00 36.57 3.58
247 248 3.545703 ACCGGAGATTGAATCCATTGTC 58.454 45.455 9.46 0.00 36.57 3.18
248 249 3.545703 GACCGGAGATTGAATCCATTGT 58.454 45.455 9.46 0.00 36.57 2.71
249 250 2.880890 GGACCGGAGATTGAATCCATTG 59.119 50.000 9.46 0.00 36.57 2.82
250 251 2.158608 GGGACCGGAGATTGAATCCATT 60.159 50.000 9.46 0.00 36.57 3.16
251 252 1.421646 GGGACCGGAGATTGAATCCAT 59.578 52.381 9.46 0.00 36.57 3.41
252 253 0.837272 GGGACCGGAGATTGAATCCA 59.163 55.000 9.46 0.00 36.57 3.41
253 254 0.108774 GGGGACCGGAGATTGAATCC 59.891 60.000 9.46 0.58 40.86 3.01
254 255 3.708013 GGGGACCGGAGATTGAATC 57.292 57.895 9.46 0.00 40.86 2.52
277 278 2.753043 TACTCCTCGGACACGGGC 60.753 66.667 0.00 0.00 39.92 6.13
278 279 2.772691 GCTACTCCTCGGACACGGG 61.773 68.421 0.00 0.00 41.28 5.28
279 280 2.044555 TGCTACTCCTCGGACACGG 61.045 63.158 0.00 0.00 41.39 4.94
280 281 1.136984 GTGCTACTCCTCGGACACG 59.863 63.158 0.00 0.00 42.74 4.49
281 282 1.511768 GGTGCTACTCCTCGGACAC 59.488 63.158 0.00 0.00 0.00 3.67
282 283 2.044555 CGGTGCTACTCCTCGGACA 61.045 63.158 0.00 0.00 0.00 4.02
283 284 2.772691 CCGGTGCTACTCCTCGGAC 61.773 68.421 0.00 0.00 42.94 4.79
284 285 2.439701 CCGGTGCTACTCCTCGGA 60.440 66.667 0.00 0.00 42.94 4.55
285 286 2.439701 TCCGGTGCTACTCCTCGG 60.440 66.667 0.00 0.00 41.80 4.63
286 287 3.111939 CTCCGGTGCTACTCCTCG 58.888 66.667 0.00 0.00 0.00 4.63
287 288 2.052690 TGCTCCGGTGCTACTCCTC 61.053 63.158 27.24 0.00 0.00 3.71
288 289 2.037367 TGCTCCGGTGCTACTCCT 59.963 61.111 27.24 0.00 0.00 3.69
289 290 2.184579 GTGCTCCGGTGCTACTCC 59.815 66.667 27.24 8.19 0.00 3.85
290 291 2.184579 GGTGCTCCGGTGCTACTC 59.815 66.667 27.24 15.07 0.00 2.59
327 328 4.388499 ATCACCGCGACCACCACC 62.388 66.667 8.23 0.00 0.00 4.61
328 329 3.118454 CATCACCGCGACCACCAC 61.118 66.667 8.23 0.00 0.00 4.16
330 331 4.760047 AGCATCACCGCGACCACC 62.760 66.667 8.23 0.00 36.85 4.61
331 332 3.490759 CAGCATCACCGCGACCAC 61.491 66.667 8.23 0.00 36.85 4.16
353 354 2.019249 CCGTGATCATCCAAGCACATT 58.981 47.619 0.00 0.00 0.00 2.71
375 376 1.450531 CGGGCCTTCATTGGAGCATC 61.451 60.000 0.84 0.00 0.00 3.91
394 395 2.030823 TCGCAACATCATCGAAGCAATC 59.969 45.455 0.00 0.00 0.00 2.67
396 397 1.128507 GTCGCAACATCATCGAAGCAA 59.871 47.619 0.00 0.00 33.81 3.91
456 457 5.648178 TCGTAGTATTGTAGAAACAGCCA 57.352 39.130 0.00 0.00 36.83 4.75
469 470 1.070758 CTGGCCTGCCATCGTAGTATT 59.929 52.381 11.98 0.00 46.15 1.89
470 471 0.681733 CTGGCCTGCCATCGTAGTAT 59.318 55.000 11.98 0.00 46.15 2.12
471 472 2.028125 GCTGGCCTGCCATCGTAGTA 62.028 60.000 23.24 0.00 46.15 1.82
472 473 2.903357 CTGGCCTGCCATCGTAGT 59.097 61.111 11.98 0.00 46.15 2.73
473 474 2.590007 GCTGGCCTGCCATCGTAG 60.590 66.667 23.24 0.39 46.15 3.51
474 475 2.593468 GAAGCTGGCCTGCCATCGTA 62.593 60.000 28.96 0.00 46.15 3.43
475 476 3.984193 GAAGCTGGCCTGCCATCGT 62.984 63.158 28.96 9.22 46.15 3.73
476 477 3.207669 GAAGCTGGCCTGCCATCG 61.208 66.667 28.96 1.96 46.15 3.84
477 478 3.207669 CGAAGCTGGCCTGCCATC 61.208 66.667 28.96 24.56 46.15 3.51
478 479 3.720601 TCGAAGCTGGCCTGCCAT 61.721 61.111 28.96 19.29 46.15 4.40
479 480 4.704833 GTCGAAGCTGGCCTGCCA 62.705 66.667 28.96 10.98 45.02 4.92
480 481 4.704833 TGTCGAAGCTGGCCTGCC 62.705 66.667 28.96 14.98 0.00 4.85
481 482 3.123620 CTGTCGAAGCTGGCCTGC 61.124 66.667 25.96 25.96 0.00 4.85
515 516 0.975556 TCCTTGACGCCTCTGCCATA 60.976 55.000 0.00 0.00 0.00 2.74
539 540 5.163774 GCTTGGATATAGCAATGCTTAGAGC 60.164 44.000 14.85 9.92 40.44 4.09
577 578 6.737254 TGAATTTGGTACTAGCAAGCTTAC 57.263 37.500 0.00 0.00 36.89 2.34
628 629 5.167845 CAGGCACTAAACGGCATTAAAAAT 58.832 37.500 0.00 0.00 36.02 1.82
629 630 4.038162 ACAGGCACTAAACGGCATTAAAAA 59.962 37.500 0.00 0.00 36.02 1.94
630 631 3.570550 ACAGGCACTAAACGGCATTAAAA 59.429 39.130 0.00 0.00 36.02 1.52
637 638 0.040425 CAACACAGGCACTAAACGGC 60.040 55.000 0.00 0.00 36.02 5.68
649 650 3.937079 TGCTGCAGATAATCTCAACACAG 59.063 43.478 20.43 0.00 0.00 3.66
702 703 5.353678 CCGTACTTCACTAGTAGTGCTTAGT 59.646 44.000 23.14 23.49 45.54 2.24
787 926 6.264832 TCGAGACTACTTCACGTAAAACAAA 58.735 36.000 0.00 0.00 39.17 2.83
788 927 5.820131 TCGAGACTACTTCACGTAAAACAA 58.180 37.500 0.00 0.00 39.17 2.83
789 928 5.422666 TCGAGACTACTTCACGTAAAACA 57.577 39.130 0.00 0.00 39.17 2.83
790 929 6.924629 AATCGAGACTACTTCACGTAAAAC 57.075 37.500 0.00 0.00 39.17 2.43
791 930 6.738200 CGTAATCGAGACTACTTCACGTAAAA 59.262 38.462 0.00 0.00 39.17 1.52
792 931 6.090763 TCGTAATCGAGACTACTTCACGTAAA 59.909 38.462 0.00 0.00 41.35 2.01
793 932 5.576774 TCGTAATCGAGACTACTTCACGTAA 59.423 40.000 0.00 0.00 41.35 3.18
842 985 4.664392 AGGATTAGGAGTCCACTATACGG 58.336 47.826 12.86 0.00 38.25 4.02
853 996 3.838244 TTGCGCATTAGGATTAGGAGT 57.162 42.857 12.75 0.00 0.00 3.85
855 998 3.476552 CCTTTGCGCATTAGGATTAGGA 58.523 45.455 26.65 0.00 0.00 2.94
856 999 2.554032 CCCTTTGCGCATTAGGATTAGG 59.446 50.000 30.33 17.79 0.00 2.69
857 1000 3.476552 TCCCTTTGCGCATTAGGATTAG 58.523 45.455 30.33 18.32 0.00 1.73
858 1001 3.569194 TCCCTTTGCGCATTAGGATTA 57.431 42.857 30.33 17.44 0.00 1.75
859 1002 2.435372 TCCCTTTGCGCATTAGGATT 57.565 45.000 30.33 0.00 0.00 3.01
860 1003 2.664402 ATCCCTTTGCGCATTAGGAT 57.336 45.000 30.33 26.61 0.00 3.24
899 1042 2.198827 TTGATCCAAACGACCTGCAT 57.801 45.000 0.00 0.00 0.00 3.96
900 1043 2.198827 ATTGATCCAAACGACCTGCA 57.801 45.000 0.00 0.00 0.00 4.41
911 1055 3.740832 CGTCGCTGCTTTATATTGATCCA 59.259 43.478 0.00 0.00 0.00 3.41
934 1078 0.739813 GCAACTTCTATGGCGACCGT 60.740 55.000 0.00 0.00 0.00 4.83
935 1079 0.739462 TGCAACTTCTATGGCGACCG 60.739 55.000 0.00 0.00 0.00 4.79
936 1080 0.727398 GTGCAACTTCTATGGCGACC 59.273 55.000 0.00 0.00 0.00 4.79
988 1440 1.416813 CTGCTCATCTTCCGCACGAC 61.417 60.000 0.00 0.00 0.00 4.34
1059 1511 3.305177 ATTGTACTCCGCCGCCGTT 62.305 57.895 0.00 0.00 0.00 4.44
1306 1764 0.176680 ATCCACGCCTTGCTGTCTAG 59.823 55.000 0.00 0.00 0.00 2.43
1308 1766 1.078848 GATCCACGCCTTGCTGTCT 60.079 57.895 0.00 0.00 0.00 3.41
1316 1774 1.990424 TGGAACATGATCCACGCCT 59.010 52.632 19.99 0.00 44.52 5.52
1401 1859 1.810151 GTGCAATTGCCGACCTTCTTA 59.190 47.619 26.94 1.64 41.18 2.10
1425 1889 2.935481 CTCACCCTGGGGCCTTGA 60.935 66.667 18.88 10.55 39.32 3.02
1801 2284 2.227089 GACCGCACTCGATGTCCCTT 62.227 60.000 0.00 0.00 38.10 3.95
1840 2323 3.838244 TGAACTAGCAACTGAAGGTGT 57.162 42.857 0.00 0.00 0.00 4.16
1892 2384 4.453136 ACGAAACCAATGCTATTACGTTGT 59.547 37.500 0.00 0.00 35.23 3.32
1926 2424 1.277495 CGATGCTGCGATCGTGCATA 61.277 55.000 33.38 18.47 45.90 3.14
1930 2428 3.333189 CCCGATGCTGCGATCGTG 61.333 66.667 17.81 11.16 43.07 4.35
2211 2753 2.047002 TGATACAGTCGACGGATGGA 57.953 50.000 22.71 6.69 0.00 3.41
2217 2766 2.765108 AGCTCATGATACAGTCGACG 57.235 50.000 10.46 7.86 0.00 5.12
2237 2788 1.067354 TGCATGCACACACAACAACAA 60.067 42.857 18.46 0.00 0.00 2.83
2377 2928 0.928229 GTACGCCAGCCTAATGTTCG 59.072 55.000 0.00 0.00 0.00 3.95
2391 2942 2.173382 CCGCTTGTGCTTGTACGC 59.827 61.111 0.00 0.00 36.97 4.42
2502 7372 2.740714 GATGCTCGCGCTTTTCCGT 61.741 57.895 5.56 0.00 36.97 4.69
2507 7377 0.445436 CAAGAAGATGCTCGCGCTTT 59.555 50.000 5.56 0.00 36.97 3.51
2530 7400 7.759489 AGCAAAACTATTACAGAAACCATCA 57.241 32.000 0.00 0.00 0.00 3.07
2540 7410 9.297586 CGACTATGACTTAGCAAAACTATTACA 57.702 33.333 0.00 0.00 0.00 2.41
2541 7411 9.512435 TCGACTATGACTTAGCAAAACTATTAC 57.488 33.333 0.00 0.00 0.00 1.89
2542 7412 9.512435 GTCGACTATGACTTAGCAAAACTATTA 57.488 33.333 8.70 0.00 35.95 0.98
2543 7413 8.251721 AGTCGACTATGACTTAGCAAAACTATT 58.748 33.333 18.46 0.00 46.85 1.73
2544 7414 7.773149 AGTCGACTATGACTTAGCAAAACTAT 58.227 34.615 18.46 0.00 46.85 2.12
2545 7415 7.154435 AGTCGACTATGACTTAGCAAAACTA 57.846 36.000 18.46 0.00 46.85 2.24
2546 7416 6.026947 AGTCGACTATGACTTAGCAAAACT 57.973 37.500 18.46 0.00 46.85 2.66
2556 7426 5.177326 ACGAAGTCTAAGTCGACTATGACT 58.823 41.667 30.94 30.94 45.70 3.41
2557 7427 5.467902 ACGAAGTCTAAGTCGACTATGAC 57.532 43.478 28.62 28.62 43.14 3.06
2558 7428 7.279536 ACATAACGAAGTCTAAGTCGACTATGA 59.720 37.037 20.39 16.58 45.00 2.15
2559 7429 7.408123 ACATAACGAAGTCTAAGTCGACTATG 58.592 38.462 20.39 15.57 45.00 2.23
2560 7430 7.495279 AGACATAACGAAGTCTAAGTCGACTAT 59.505 37.037 20.39 11.63 45.00 2.12
2561 7431 6.815641 AGACATAACGAAGTCTAAGTCGACTA 59.184 38.462 20.39 0.00 45.00 2.59
2562 7432 5.642919 AGACATAACGAAGTCTAAGTCGACT 59.357 40.000 13.58 13.58 45.00 4.18
2563 7433 5.867166 AGACATAACGAAGTCTAAGTCGAC 58.133 41.667 7.70 7.70 45.00 4.20
2564 7434 5.640783 TGAGACATAACGAAGTCTAAGTCGA 59.359 40.000 0.00 0.00 45.00 4.20
2565 7435 5.866075 TGAGACATAACGAAGTCTAAGTCG 58.134 41.667 0.00 0.00 45.00 4.18
2567 7437 6.821031 ACTGAGACATAACGAAGTCTAAGT 57.179 37.500 6.74 6.74 46.82 2.24
2568 7438 5.960683 CGACTGAGACATAACGAAGTCTAAG 59.039 44.000 5.59 5.59 45.00 2.18
2569 7439 5.640783 TCGACTGAGACATAACGAAGTCTAA 59.359 40.000 0.00 0.00 45.00 2.10
2570 7440 5.173664 TCGACTGAGACATAACGAAGTCTA 58.826 41.667 0.00 0.00 45.00 2.59
2571 7441 4.001652 TCGACTGAGACATAACGAAGTCT 58.998 43.478 0.00 0.00 45.00 3.24
2572 7442 4.337985 TCGACTGAGACATAACGAAGTC 57.662 45.455 0.00 0.00 45.00 3.01
2574 7444 6.050454 ACTATCGACTGAGACATAACGAAG 57.950 41.667 0.00 0.00 33.77 3.79
2575 7445 7.725818 ATACTATCGACTGAGACATAACGAA 57.274 36.000 0.00 0.00 33.77 3.85
2576 7446 7.725818 AATACTATCGACTGAGACATAACGA 57.274 36.000 0.00 0.00 0.00 3.85
2577 7447 8.682895 CAAAATACTATCGACTGAGACATAACG 58.317 37.037 0.00 0.00 0.00 3.18
2578 7448 8.480853 GCAAAATACTATCGACTGAGACATAAC 58.519 37.037 0.00 0.00 0.00 1.89
2579 7449 8.414003 AGCAAAATACTATCGACTGAGACATAA 58.586 33.333 0.00 0.00 0.00 1.90
2580 7450 7.941919 AGCAAAATACTATCGACTGAGACATA 58.058 34.615 0.00 0.00 0.00 2.29
2581 7451 6.810911 AGCAAAATACTATCGACTGAGACAT 58.189 36.000 0.00 0.00 0.00 3.06
2582 7452 6.208988 AGCAAAATACTATCGACTGAGACA 57.791 37.500 0.00 0.00 0.00 3.41
2583 7453 7.275779 TCAAAGCAAAATACTATCGACTGAGAC 59.724 37.037 0.00 0.00 0.00 3.36
2584 7454 7.320399 TCAAAGCAAAATACTATCGACTGAGA 58.680 34.615 0.00 0.00 0.00 3.27
2585 7455 7.525688 TCAAAGCAAAATACTATCGACTGAG 57.474 36.000 0.00 0.00 0.00 3.35
2586 7456 8.492673 AATCAAAGCAAAATACTATCGACTGA 57.507 30.769 0.00 0.00 0.00 3.41
2587 7457 9.559958 AAAATCAAAGCAAAATACTATCGACTG 57.440 29.630 0.00 0.00 0.00 3.51
2588 7458 9.559958 CAAAATCAAAGCAAAATACTATCGACT 57.440 29.630 0.00 0.00 0.00 4.18
2589 7459 8.313931 GCAAAATCAAAGCAAAATACTATCGAC 58.686 33.333 0.00 0.00 0.00 4.20
2590 7460 8.026026 TGCAAAATCAAAGCAAAATACTATCGA 58.974 29.630 0.00 0.00 34.97 3.59
2591 7461 8.172159 TGCAAAATCAAAGCAAAATACTATCG 57.828 30.769 0.00 0.00 34.97 2.92
2592 7462 9.910511 CATGCAAAATCAAAGCAAAATACTATC 57.089 29.630 0.00 0.00 42.15 2.08
2593 7463 8.885722 CCATGCAAAATCAAAGCAAAATACTAT 58.114 29.630 0.00 0.00 42.15 2.12
2594 7464 8.093307 TCCATGCAAAATCAAAGCAAAATACTA 58.907 29.630 0.00 0.00 42.15 1.82
2595 7465 6.935771 TCCATGCAAAATCAAAGCAAAATACT 59.064 30.769 0.00 0.00 42.15 2.12
2596 7466 7.118101 TCTCCATGCAAAATCAAAGCAAAATAC 59.882 33.333 0.00 0.00 42.15 1.89
2597 7467 7.160049 TCTCCATGCAAAATCAAAGCAAAATA 58.840 30.769 0.00 0.00 42.15 1.40
2598 7468 5.998981 TCTCCATGCAAAATCAAAGCAAAAT 59.001 32.000 0.00 0.00 42.15 1.82
2599 7469 5.366460 TCTCCATGCAAAATCAAAGCAAAA 58.634 33.333 0.00 0.00 42.15 2.44
2600 7470 4.958509 TCTCCATGCAAAATCAAAGCAAA 58.041 34.783 0.00 0.00 42.15 3.68
2601 7471 4.603989 TCTCCATGCAAAATCAAAGCAA 57.396 36.364 0.00 0.00 42.15 3.91
2602 7472 4.811969 ATCTCCATGCAAAATCAAAGCA 57.188 36.364 0.00 0.00 43.14 3.91
2603 7473 4.266976 CGAATCTCCATGCAAAATCAAAGC 59.733 41.667 0.00 0.00 0.00 3.51
2604 7474 5.287752 CACGAATCTCCATGCAAAATCAAAG 59.712 40.000 0.00 0.00 0.00 2.77
2605 7475 5.162794 CACGAATCTCCATGCAAAATCAAA 58.837 37.500 0.00 0.00 0.00 2.69
2606 7476 4.735985 CACGAATCTCCATGCAAAATCAA 58.264 39.130 0.00 0.00 0.00 2.57
2607 7477 3.427909 GCACGAATCTCCATGCAAAATCA 60.428 43.478 0.00 0.00 38.00 2.57
2608 7478 3.111098 GCACGAATCTCCATGCAAAATC 58.889 45.455 0.00 0.00 38.00 2.17
2609 7479 2.492881 TGCACGAATCTCCATGCAAAAT 59.507 40.909 0.00 0.00 44.72 1.82
2610 7480 1.885233 TGCACGAATCTCCATGCAAAA 59.115 42.857 0.00 0.00 44.72 2.44
2611 7481 1.532523 TGCACGAATCTCCATGCAAA 58.467 45.000 0.00 0.00 44.72 3.68
2612 7482 3.246403 TGCACGAATCTCCATGCAA 57.754 47.368 0.00 0.00 44.72 4.08
2613 7483 1.532523 TTTGCACGAATCTCCATGCA 58.467 45.000 0.00 0.00 45.94 3.96
2614 7484 2.634982 TTTTGCACGAATCTCCATGC 57.365 45.000 0.00 0.00 38.59 4.06
2653 7523 9.515226 AAGTGCTATGGTATGTAAGAAGAAAAA 57.485 29.630 0.00 0.00 0.00 1.94
2654 7524 8.946085 CAAGTGCTATGGTATGTAAGAAGAAAA 58.054 33.333 0.00 0.00 0.00 2.29
2655 7525 8.318412 TCAAGTGCTATGGTATGTAAGAAGAAA 58.682 33.333 0.00 0.00 0.00 2.52
2656 7526 7.764443 GTCAAGTGCTATGGTATGTAAGAAGAA 59.236 37.037 0.00 0.00 0.00 2.52
2657 7527 7.124298 AGTCAAGTGCTATGGTATGTAAGAAGA 59.876 37.037 0.00 0.00 0.00 2.87
2658 7528 7.268586 AGTCAAGTGCTATGGTATGTAAGAAG 58.731 38.462 0.00 0.00 0.00 2.85
2659 7529 7.182817 AGTCAAGTGCTATGGTATGTAAGAA 57.817 36.000 0.00 0.00 0.00 2.52
2660 7530 6.791867 AGTCAAGTGCTATGGTATGTAAGA 57.208 37.500 0.00 0.00 0.00 2.10
2661 7531 8.414003 TCTAAGTCAAGTGCTATGGTATGTAAG 58.586 37.037 0.00 0.00 0.00 2.34
2662 7532 8.195436 GTCTAAGTCAAGTGCTATGGTATGTAA 58.805 37.037 0.00 0.00 0.00 2.41
2663 7533 7.560262 AGTCTAAGTCAAGTGCTATGGTATGTA 59.440 37.037 0.00 0.00 0.00 2.29
2664 7534 6.381420 AGTCTAAGTCAAGTGCTATGGTATGT 59.619 38.462 0.00 0.00 0.00 2.29
2665 7535 6.810911 AGTCTAAGTCAAGTGCTATGGTATG 58.189 40.000 0.00 0.00 0.00 2.39
2666 7536 7.268586 CAAGTCTAAGTCAAGTGCTATGGTAT 58.731 38.462 0.00 0.00 0.00 2.73
2667 7537 6.351033 CCAAGTCTAAGTCAAGTGCTATGGTA 60.351 42.308 0.00 0.00 0.00 3.25
2668 7538 5.482908 CAAGTCTAAGTCAAGTGCTATGGT 58.517 41.667 0.00 0.00 0.00 3.55
2669 7539 4.872691 CCAAGTCTAAGTCAAGTGCTATGG 59.127 45.833 0.00 0.00 0.00 2.74
2670 7540 5.482908 ACCAAGTCTAAGTCAAGTGCTATG 58.517 41.667 0.00 0.00 0.00 2.23
2671 7541 5.746990 ACCAAGTCTAAGTCAAGTGCTAT 57.253 39.130 0.00 0.00 0.00 2.97
2672 7542 5.546621 AACCAAGTCTAAGTCAAGTGCTA 57.453 39.130 0.00 0.00 0.00 3.49
2673 7543 4.423625 AACCAAGTCTAAGTCAAGTGCT 57.576 40.909 0.00 0.00 0.00 4.40
2674 7544 5.758784 ACTTAACCAAGTCTAAGTCAAGTGC 59.241 40.000 0.00 0.00 41.25 4.40
2688 7558 7.273815 GTCTTAATCGACTGAGACTTAACCAAG 59.726 40.741 11.11 0.00 36.47 3.61
2689 7559 7.088905 GTCTTAATCGACTGAGACTTAACCAA 58.911 38.462 11.11 0.00 36.47 3.67
2690 7560 6.349944 GGTCTTAATCGACTGAGACTTAACCA 60.350 42.308 16.82 0.00 38.77 3.67
2691 7561 6.035217 GGTCTTAATCGACTGAGACTTAACC 58.965 44.000 16.82 0.00 38.77 2.85
2692 7562 6.854778 AGGTCTTAATCGACTGAGACTTAAC 58.145 40.000 16.82 2.42 38.77 2.01
2693 7563 8.457261 GTTAGGTCTTAATCGACTGAGACTTAA 58.543 37.037 15.95 15.95 37.94 1.85
2694 7564 7.066766 GGTTAGGTCTTAATCGACTGAGACTTA 59.933 40.741 16.82 11.74 38.77 2.24
2695 7565 6.127675 GGTTAGGTCTTAATCGACTGAGACTT 60.128 42.308 16.82 12.69 38.77 3.01
2696 7566 5.357596 GGTTAGGTCTTAATCGACTGAGACT 59.642 44.000 16.82 7.21 38.77 3.24
2697 7567 5.125097 TGGTTAGGTCTTAATCGACTGAGAC 59.875 44.000 10.04 10.04 38.19 3.36
2698 7568 5.125097 GTGGTTAGGTCTTAATCGACTGAGA 59.875 44.000 0.00 0.00 34.38 3.27
2699 7569 5.105877 TGTGGTTAGGTCTTAATCGACTGAG 60.106 44.000 0.00 0.00 34.38 3.35
2700 7570 4.768448 TGTGGTTAGGTCTTAATCGACTGA 59.232 41.667 0.00 0.00 34.38 3.41
2701 7571 4.863131 GTGTGGTTAGGTCTTAATCGACTG 59.137 45.833 0.00 0.00 34.38 3.51
2702 7572 4.081807 GGTGTGGTTAGGTCTTAATCGACT 60.082 45.833 0.00 0.00 34.38 4.18
2703 7573 4.179298 GGTGTGGTTAGGTCTTAATCGAC 58.821 47.826 0.00 0.00 0.00 4.20
2704 7574 3.196254 GGGTGTGGTTAGGTCTTAATCGA 59.804 47.826 0.00 0.00 0.00 3.59
2705 7575 3.197116 AGGGTGTGGTTAGGTCTTAATCG 59.803 47.826 0.00 0.00 0.00 3.34
2706 7576 4.838904 AGGGTGTGGTTAGGTCTTAATC 57.161 45.455 0.00 0.00 0.00 1.75
2707 7577 5.312443 AGAAAGGGTGTGGTTAGGTCTTAAT 59.688 40.000 0.00 0.00 0.00 1.40
2708 7578 4.661709 AGAAAGGGTGTGGTTAGGTCTTAA 59.338 41.667 0.00 0.00 0.00 1.85
2709 7579 4.041198 CAGAAAGGGTGTGGTTAGGTCTTA 59.959 45.833 0.00 0.00 0.00 2.10
2710 7580 3.053826 AGAAAGGGTGTGGTTAGGTCTT 58.946 45.455 0.00 0.00 0.00 3.01
2711 7581 2.372172 CAGAAAGGGTGTGGTTAGGTCT 59.628 50.000 0.00 0.00 0.00 3.85
2712 7582 2.105993 ACAGAAAGGGTGTGGTTAGGTC 59.894 50.000 0.00 0.00 0.00 3.85
2713 7583 2.132686 ACAGAAAGGGTGTGGTTAGGT 58.867 47.619 0.00 0.00 0.00 3.08
2714 7584 2.951229 ACAGAAAGGGTGTGGTTAGG 57.049 50.000 0.00 0.00 0.00 2.69
2715 7585 7.166167 AGTATTTACAGAAAGGGTGTGGTTAG 58.834 38.462 0.00 0.00 0.00 2.34
2716 7586 7.081857 AGTATTTACAGAAAGGGTGTGGTTA 57.918 36.000 0.00 0.00 0.00 2.85
2717 7587 5.948842 AGTATTTACAGAAAGGGTGTGGTT 58.051 37.500 0.00 0.00 0.00 3.67
2718 7588 5.578157 AGTATTTACAGAAAGGGTGTGGT 57.422 39.130 0.00 0.00 0.00 4.16
2719 7589 6.238648 AGAAGTATTTACAGAAAGGGTGTGG 58.761 40.000 0.00 0.00 0.00 4.17
2720 7590 7.162082 AGAGAAGTATTTACAGAAAGGGTGTG 58.838 38.462 0.00 0.00 0.00 3.82
2721 7591 7.317722 AGAGAAGTATTTACAGAAAGGGTGT 57.682 36.000 0.00 0.00 0.00 4.16
2722 7592 7.361286 GCAAGAGAAGTATTTACAGAAAGGGTG 60.361 40.741 0.00 0.00 0.00 4.61
2723 7593 6.655425 GCAAGAGAAGTATTTACAGAAAGGGT 59.345 38.462 0.00 0.00 0.00 4.34
2724 7594 6.655003 TGCAAGAGAAGTATTTACAGAAAGGG 59.345 38.462 0.00 0.00 0.00 3.95
2725 7595 7.173218 TGTGCAAGAGAAGTATTTACAGAAAGG 59.827 37.037 0.00 0.00 0.00 3.11
2726 7596 8.087982 TGTGCAAGAGAAGTATTTACAGAAAG 57.912 34.615 0.00 0.00 0.00 2.62
2727 7597 7.715249 ACTGTGCAAGAGAAGTATTTACAGAAA 59.285 33.333 0.00 0.00 37.16 2.52
2728 7598 7.217200 ACTGTGCAAGAGAAGTATTTACAGAA 58.783 34.615 0.00 0.00 37.16 3.02
2812 7722 2.490903 CCGGACTACATATAAGGGTCGG 59.509 54.545 0.00 0.00 0.00 4.79
3021 7934 4.585162 CACGGATTAGTTAGAGGGACATCT 59.415 45.833 0.00 0.00 0.00 2.90
3029 7942 4.557690 CGACACAACACGGATTAGTTAGAG 59.442 45.833 0.00 0.00 0.00 2.43
3135 8066 6.155565 TCGGGAATAGAGAGTTAAACATTGGA 59.844 38.462 0.00 0.00 0.00 3.53
3136 8067 6.346096 TCGGGAATAGAGAGTTAAACATTGG 58.654 40.000 0.00 0.00 0.00 3.16
3137 8068 6.018669 GCTCGGGAATAGAGAGTTAAACATTG 60.019 42.308 0.00 0.00 37.93 2.82
3138 8069 6.049790 GCTCGGGAATAGAGAGTTAAACATT 58.950 40.000 0.00 0.00 37.93 2.71
3139 8070 5.364157 AGCTCGGGAATAGAGAGTTAAACAT 59.636 40.000 0.00 0.00 37.93 2.71
3140 8071 4.710375 AGCTCGGGAATAGAGAGTTAAACA 59.290 41.667 0.00 0.00 37.93 2.83
3190 8122 0.250467 GCAAGTTGAGGAGGCTGTCA 60.250 55.000 7.16 0.00 0.00 3.58
3456 8617 3.692690 TCACCCAAACTAACCCTAATGC 58.307 45.455 0.00 0.00 0.00 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.