AutoCloner

Multiple sequence alignment - TraesCS3B01G573000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3B01G573000	chr3B	100.000	3131	0	0	1	3131	804007796	804010926	0.000000e+00	5782.0
1	TraesCS3B01G573000	chr3B	84.357	1189	128	29	883	2023	804108208	804109386	0.000000e+00	1112.0
2	TraesCS3B01G573000	chr3A	92.882	2557	112	31	623	3131	727352122	727354656	0.000000e+00	3650.0
3	TraesCS3B01G573000	chr3A	86.197	1449	134	33	623	2032	727374859	727373438	0.000000e+00	1507.0
4	TraesCS3B01G573000	chr3A	81.384	607	57	26	1	599	727375475	727374917	7.970000e-121	444.0
5	TraesCS3B01G573000	chr3A	81.605	511	40	12	1	497	727350509	727350979	1.060000e-99	374.0
6	TraesCS3B01G573000	chr2A	95.261	1836	77	7	1296	3131	605337067	605335242	0.000000e+00	2900.0
7	TraesCS3B01G573000	chr2A	89.833	600	24	11	627	1212	605337734	605337158	0.000000e+00	736.0
8	TraesCS3B01G573000	chr2A	88.511	618	43	18	1	601	605352672	605352066	0.000000e+00	723.0
9	TraesCS3B01G573000	chr2A	88.251	366	31	5	1294	1659	605316072	605315719	8.020000e-116	427.0
10	TraesCS3B01G573000	chr2A	87.423	326	25	9	885	1207	605316514	605316202	8.260000e-96	361.0
11	TraesCS3B01G573000	chr3D	85.272	679	42	17	648	1276	597246014	597246684	0.000000e+00	647.0
12	TraesCS3B01G573000	chr3D	86.728	324	39	4	2229	2551	600110280	600110600	1.070000e-94	357.0
13	TraesCS3B01G573000	chr3D	84.483	290	43	2	2842	3130	381881677	381881389	5.110000e-73	285.0
14	TraesCS3B01G573000	chr6D	86.280	328	41	4	2225	2551	433601012	433600688	1.380000e-93	353.0
15	TraesCS3B01G573000	chr6D	85.337	341	46	4	2212	2551	123967166	123967503	1.790000e-92	350.0
16	TraesCS3B01G573000	chr6D	85.802	324	42	4	2229	2551	463630274	463630594	1.080000e-89	340.0
17	TraesCS3B01G573000	chr7D	86.478	318	41	2	2234	2551	579247866	579248181	6.430000e-92	348.0
18	TraesCS3B01G573000	chr7D	85.933	327	42	4	2226	2551	546247577	546247254	2.310000e-91	346.0
19	TraesCS3B01G573000	chr7D	74.958	595	105	30	1	578	441986227	441986794	1.880000e-57	233.0
20	TraesCS3B01G573000	chr7A	85.893	319	41	4	2232	2550	641974555	641974241	1.390000e-88	337.0
21	TraesCS3B01G573000	chr1D	84.452	283	44	0	2842	3124	476406593	476406875	2.380000e-71	279.0
22	TraesCS3B01G573000	chr1D	82.667	75	9	4	168	241	483967722	483967793	2.610000e-06	63.9
23	TraesCS3B01G573000	chr7B	75.091	550	99	30	1	532	458616481	458617010	4.060000e-54	222.0
24	TraesCS3B01G573000	chr4D	73.600	250	38	22	106	340	419229878	419229642	1.560000e-08	71.3
25	TraesCS3B01G573000	chr4D	75.497	151	22	10	201	340	56314450	56314304	3.370000e-05	60.2

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3B01G573000	chr3B	804007796	804010926	3130	False	5782.0	5782	100.0000	1	3131	1	chr3B.!!$F1	3130
1	TraesCS3B01G573000	chr3B	804108208	804109386	1178	False	1112.0	1112	84.3570	883	2023	1	chr3B.!!$F2	1140
2	TraesCS3B01G573000	chr3A	727350509	727354656	4147	False	2012.0	3650	87.2435	1	3131	2	chr3A.!!$F1	3130
3	TraesCS3B01G573000	chr3A	727373438	727375475	2037	True	975.5	1507	83.7905	1	2032	2	chr3A.!!$R1	2031
4	TraesCS3B01G573000	chr2A	605335242	605337734	2492	True	1818.0	2900	92.5470	627	3131	2	chr2A.!!$R3	2504
5	TraesCS3B01G573000	chr2A	605352066	605352672	606	True	723.0	723	88.5110	1	601	1	chr2A.!!$R1	600
6	TraesCS3B01G573000	chr2A	605315719	605316514	795	True	394.0	427	87.8370	885	1659	2	chr2A.!!$R2	774
7	TraesCS3B01G573000	chr3D	597246014	597246684	670	False	647.0	647	85.2720	648	1276	1	chr3D.!!$F1	628
8	TraesCS3B01G573000	chr7D	441986227	441986794	567	False	233.0	233	74.9580	1	578	1	chr7D.!!$F1	577
9	TraesCS3B01G573000	chr7B	458616481	458617010	529	False	222.0	222	75.0910	1	532	1	chr7B.!!$F1	531

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
792	1885	0.179116	CGTCTGTCCAGCTCTCCATG	60.179	60.0	0.0	0.0	0.0	3.66	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2583	3759	0.179018	AAAGGGAGCACAGAAAGCGT	60.179	50.0	0.0	0.0	37.01	5.07	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
34	36	5.964887	TTTAGAGCAAAATTGTGTGCAAC	57.035	34.783	10.59	0.00	43.42	4.17
36	38	3.450578	AGAGCAAAATTGTGTGCAACTG	58.549	40.909	10.59	0.00	43.42	3.16
39	41	3.618150	AGCAAAATTGTGTGCAACTGTTC	59.382	39.130	10.59	0.00	43.42	3.18
178	193	5.620206	TGTGAGTTGCTCATTCCTTCTTAA	58.380	37.500	1.99	0.00	42.73	1.85
258	275	7.642071	AATTGCATTATTTGTCTGTTGTGTC	57.358	32.000	0.00	0.00	0.00	3.67
259	276	5.119931	TGCATTATTTGTCTGTTGTGTCC	57.880	39.130	0.00	0.00	0.00	4.02
260	277	4.582240	TGCATTATTTGTCTGTTGTGTCCA	59.418	37.500	0.00	0.00	0.00	4.02
411	446	5.914898	AGGGTAATGCCAATTTCACTAAC	57.085	39.130	0.00	0.00	39.65	2.34
438	473	8.855110	TCATTCTTCCTTACAAAAGCACATTAA	58.145	29.630	0.00	0.00	0.00	1.40
445	481	9.906660	TCCTTACAAAAGCACATTAATTAGTTG	57.093	29.630	0.00	0.00	0.00	3.16
604	1014	8.887036	AACAAACAAATTCAATTACTCTTCCC	57.113	30.769	0.00	0.00	0.00	3.97
605	1015	8.250143	ACAAACAAATTCAATTACTCTTCCCT	57.750	30.769	0.00	0.00	0.00	4.20
607	1017	9.546428	CAAACAAATTCAATTACTCTTCCCTTT	57.454	29.630	0.00	0.00	0.00	3.11
609	1019	8.477419	ACAAATTCAATTACTCTTCCCTTTCA	57.523	30.769	0.00	0.00	0.00	2.69
610	1020	8.579863	ACAAATTCAATTACTCTTCCCTTTCAG	58.420	33.333	0.00	0.00	0.00	3.02
612	1022	8.940397	AATTCAATTACTCTTCCCTTTCAGAA	57.060	30.769	0.00	0.00	0.00	3.02
620	1030	7.693969	ACTCTTCCCTTTCAGAAAATATGTG	57.306	36.000	0.00	0.00	0.00	3.21
621	1031	6.151817	ACTCTTCCCTTTCAGAAAATATGTGC	59.848	38.462	0.00	0.00	0.00	4.57
640	1715	9.874205	ATATGTGCCATATTATAAAAATGTGCC	57.126	29.630	14.72	10.34	0.00	5.01
708	1783	2.042464	AGATGTGGATGCCGATACACT	58.958	47.619	1.45	0.00	43.22	3.55
718	1793	2.205074	GCCGATACACTGTTCTCATGG	58.795	52.381	0.00	0.00	0.00	3.66
719	1794	2.826428	CCGATACACTGTTCTCATGGG	58.174	52.381	0.00	0.00	0.00	4.00
720	1795	2.430694	CCGATACACTGTTCTCATGGGA	59.569	50.000	0.00	0.00	0.00	4.37
792	1885	0.179116	CGTCTGTCCAGCTCTCCATG	60.179	60.000	0.00	0.00	0.00	3.66
809	1902	7.189693	TCTCCATGCATCAATTAATTCGTAC	57.810	36.000	0.00	0.00	0.00	3.67
838	1931	2.677875	GGGCCAGTGGGAAAGCAG	60.678	66.667	12.15	0.00	35.59	4.24
923	2033	1.810412	GCTGTTGGGTTCTTCACTCGT	60.810	52.381	0.00	0.00	0.00	4.18
990	2109	4.164843	TGACCCTGAAGCAAGTTAAGTT	57.835	40.909	0.00	0.00	0.00	2.66
1145	2265	2.038426	TCATCTTCGAAAAGTGCAGGGA	59.962	45.455	0.00	0.00	33.95	4.20
1191	2311	2.160171	CCACCTCCCCCTCAAACCA	61.160	63.158	0.00	0.00	0.00	3.67
1197	2317	1.923148	CTCCCCCTCAAACCACCTATT	59.077	52.381	0.00	0.00	0.00	1.73
1207	2327	2.304751	ACCACCTATTTTCGCGGTAG	57.695	50.000	6.13	4.09	0.00	3.18
1220	2361	1.641577	GCGGTAGCTTGAATCTTCGT	58.358	50.000	0.00	0.00	41.01	3.85
1221	2362	1.324736	GCGGTAGCTTGAATCTTCGTG	59.675	52.381	0.00	0.00	41.01	4.35
1222	2363	2.607187	CGGTAGCTTGAATCTTCGTGT	58.393	47.619	0.00	0.00	0.00	4.49
1243	2384	3.559238	AGTAGCTTGTTTGCAAATCGG	57.441	42.857	16.21	9.20	33.73	4.18
1251	2392	5.334569	GCTTGTTTGCAAATCGGTTAGAGTA	60.335	40.000	16.21	0.00	33.73	2.59
1261	2402	8.068380	GCAAATCGGTTAGAGTAATGGTAATTC	58.932	37.037	0.00	0.00	0.00	2.17
1285	2436	3.296854	ACCTCATACCATGCTCGTCTTA	58.703	45.455	0.00	0.00	0.00	2.10
1307	2475	0.028770	CCTTTTTGCAGTGCGACGAA	59.971	50.000	11.20	5.48	0.00	3.85
1889	3062	1.453155	GAGTTGCCCGTGATGACATT	58.547	50.000	0.00	0.00	0.00	2.71
1962	3135	3.198680	GCCGAAAGCGTATTTGTCG	57.801	52.632	0.00	0.00	35.23	4.35
2012	3185	2.317040	TGACAAACTCGTTCCTCCTCT	58.683	47.619	0.00	0.00	0.00	3.69
2078	3251	0.868406	GCGGTCTTCAAGTTCACAGG	59.132	55.000	0.00	0.00	0.00	4.00
2118	3291	6.206634	ACAAGAAACGAAAATCTAGCAATCCA	59.793	34.615	0.00	0.00	0.00	3.41
2157	3330	3.639094	ACAAGACCAGCTAGCTAGTATGG	59.361	47.826	30.36	30.36	37.90	2.74
2202	3375	6.642131	GCCATGTGAAATGCATCGTTTATATT	59.358	34.615	0.00	0.00	0.00	1.28
2248	3421	1.401905	GGGCCTGCTAAAAATCAGTCG	59.598	52.381	0.84	0.00	0.00	4.18
2251	3424	2.096013	GCCTGCTAAAAATCAGTCGACC	59.904	50.000	13.01	0.00	0.00	4.79
2265	3438	4.998672	TCAGTCGACCGAAATTTAACCAAT	59.001	37.500	13.01	0.00	0.00	3.16
2332	3505	0.981183	TCCTACCGGTTGCAACATCT	59.019	50.000	29.55	13.60	0.00	2.90
2350	3523	4.516698	ACATCTGTCTTGCTGGTTGTAAAG	59.483	41.667	0.00	0.00	0.00	1.85
2408	3581	5.067283	GCCGGTTACAACATCCTTTATTGAT	59.933	40.000	1.90	0.00	0.00	2.57
2409	3582	6.725246	CCGGTTACAACATCCTTTATTGATC	58.275	40.000	0.00	0.00	0.00	2.92
2410	3583	6.238648	CCGGTTACAACATCCTTTATTGATCC	60.239	42.308	0.00	0.00	0.00	3.36
2435	3608	5.302360	TGTAGCATTTCAGTTAGAACGGTT	58.698	37.500	0.00	0.00	35.56	4.44
2518	3691	2.110967	AGCCATGCTGCTTGTAGCG	61.111	57.895	13.57	0.93	46.26	4.26
2519	3692	2.108514	GCCATGCTGCTTGTAGCGA	61.109	57.895	13.57	0.00	46.26	4.93
2520	3693	1.647545	GCCATGCTGCTTGTAGCGAA	61.648	55.000	13.57	0.00	46.26	4.70
2521	3694	0.804364	CCATGCTGCTTGTAGCGAAA	59.196	50.000	13.57	0.00	46.26	3.46
2522	3695	1.199789	CCATGCTGCTTGTAGCGAAAA	59.800	47.619	13.57	0.00	46.26	2.29
2545	3721	3.570926	AAAGATGCTAACGTCACTCGA	57.429	42.857	0.00	0.00	42.86	4.04
2583	3759	8.919145	ACACACCCTTTTGTTAATCTGAAATAA	58.081	29.630	0.00	0.00	0.00	1.40
2632	3808	1.573829	CGTGCACAACCTGGCGTTAT	61.574	55.000	18.64	0.00	31.77	1.89
2637	3813	1.670811	CACAACCTGGCGTTATGGATC	59.329	52.381	0.00	0.00	31.77	3.36
2756	3932	1.927174	CGTCCTGGAAAATGCTACTCG	59.073	52.381	0.00	0.00	0.00	4.18
2809	3985	9.913451	TTTTCATGAAAAATACGAAAAGCTTTG	57.087	25.926	27.22	3.52	37.35	2.77
2814	3990	9.705290	ATGAAAAATACGAAAAGCTTTGGTATT	57.295	25.926	27.09	27.09	34.67	1.89
2896	4072	4.460263	ACAACATAGCACAAAACTCTCCA	58.540	39.130	0.00	0.00	0.00	3.86
2911	4087	0.605589	CTCCAAGCTCGAACTCCAGT	59.394	55.000	0.00	0.00	0.00	4.00
2943	4119	4.592485	AAGAGGCGAGATACAAGGTATG	57.408	45.455	0.00	0.00	0.00	2.39
3074	4250	1.741770	CAAGACCTGCCCGTAGTGC	60.742	63.158	0.00	0.00	0.00	4.40

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
34	36	7.873739	AAGACAAAGAAACAAGTTTGAACAG	57.126	32.000	2.45	0.00	37.16	3.16
36	38	8.520835	AGAAAGACAAAGAAACAAGTTTGAAC	57.479	30.769	2.45	0.00	37.16	3.18
39	41	8.748380	AGAAGAAAGACAAAGAAACAAGTTTG	57.252	30.769	2.45	0.00	39.19	2.93
141	153	3.340814	ACTCACATTGCTACCCTTGAG	57.659	47.619	0.00	0.00	37.17	3.02
237	252	4.582240	TGGACACAACAGACAAATAATGCA	59.418	37.500	0.00	0.00	0.00	3.96
386	421	5.405935	AGTGAAATTGGCATTACCCTTTC	57.594	39.130	0.00	0.00	38.58	2.62
411	446	6.317789	TGTGCTTTTGTAAGGAAGAATGAG	57.682	37.500	0.00	0.00	33.20	2.90
582	991	9.764363	GAAAGGGAAGAGTAATTGAATTTGTTT	57.236	29.630	0.00	0.00	0.00	2.83
601	1011	4.671831	TGGCACATATTTTCTGAAAGGGA	58.328	39.130	2.75	0.00	0.00	4.20
616	1026	8.377034	ATGGCACATTTTTATAATATGGCACAT	58.623	29.630	5.24	11.71	45.96	3.21
640	1715	6.863126	GTGTTCCCAGATTTTACACAGAAATG	59.137	38.462	0.00	0.00	39.05	2.32
708	1783	5.935945	TGTTTTTCTACTCCCATGAGAACA	58.064	37.500	0.00	0.00	41.42	3.18
718	1793	5.470098	TGCATGAGACTTGTTTTTCTACTCC	59.530	40.000	0.00	0.00	0.00	3.85
719	1794	6.545504	TGCATGAGACTTGTTTTTCTACTC	57.454	37.500	0.00	0.00	0.00	2.59
720	1795	7.365741	CAATGCATGAGACTTGTTTTTCTACT	58.634	34.615	0.00	0.00	0.00	2.57
792	1885	5.737290	GGTGTGTGTACGAATTAATTGATGC	59.263	40.000	5.17	0.00	0.00	3.91
838	1931	1.058284	CGCGTTTCGATTTCCGGTC	59.942	57.895	0.00	0.00	41.67	4.79
923	2033	4.146245	TGAGATTATATGGAGGCCAGGA	57.854	45.455	5.01	0.00	36.75	3.86
990	2109	2.439507	GCCATGACCCATTTCTCCTCTA	59.560	50.000	0.00	0.00	0.00	2.43
1030	2150	2.755876	ATCTCCGTCTCCTGCGCA	60.756	61.111	10.98	10.98	0.00	6.09
1034	2154	1.739049	GCCAGATCTCCGTCTCCTG	59.261	63.158	0.00	0.00	0.00	3.86
1112	2232	2.949705	GAAGATGAGGAAGGGCGGCC	62.950	65.000	22.67	22.67	0.00	6.13
1191	2311	2.093869	TCAAGCTACCGCGAAAATAGGT	60.094	45.455	8.23	6.61	42.32	3.08
1197	2317	2.380084	AGATTCAAGCTACCGCGAAA	57.620	45.000	8.23	0.00	42.32	3.46
1207	2327	4.425520	AGCTACTACACGAAGATTCAAGC	58.574	43.478	0.00	0.00	0.00	4.01
1220	2361	4.083537	CCGATTTGCAAACAAGCTACTACA	60.084	41.667	15.41	0.00	37.04	2.74
1221	2362	4.083484	ACCGATTTGCAAACAAGCTACTAC	60.083	41.667	15.41	0.00	37.04	2.73
1222	2363	4.069304	ACCGATTTGCAAACAAGCTACTA	58.931	39.130	15.41	0.00	37.04	1.82
1261	2402	3.319405	AGACGAGCATGGTATGAGGTAAG	59.681	47.826	0.00	0.00	0.00	2.34
1269	2410	5.552870	AAGGATTAAGACGAGCATGGTAT	57.447	39.130	0.00	0.00	0.00	2.73
1271	2412	3.914426	AAGGATTAAGACGAGCATGGT	57.086	42.857	0.00	0.00	0.00	3.55
1285	2436	1.334960	CGTCGCACTGCAAAAAGGATT	60.335	47.619	1.11	0.00	0.00	3.01
1313	2481	1.812922	GCAGGACGAGCACATCAGG	60.813	63.158	0.00	0.00	0.00	3.86
1687	2860	1.886585	CCATATCCTCCTCGCCGAG	59.113	63.158	7.25	7.25	0.00	4.63
1923	3096	1.154197	CGTACAGAGACGTGACCTCA	58.846	55.000	0.00	0.00	38.04	3.86
1984	3157	3.058914	GGAACGAGTTTGTCAATGTGGAG	60.059	47.826	0.00	0.00	0.00	3.86
2012	3185	2.900546	GTGTCAGAAGGAGGAGGAAGAA	59.099	50.000	0.00	0.00	0.00	2.52
2061	3234	2.158813	TGTCCCTGTGAACTTGAAGACC	60.159	50.000	0.00	0.00	0.00	3.85
2078	3251	2.783135	TCTTGTTGCCTTGATCTGTCC	58.217	47.619	0.00	0.00	0.00	4.02
2118	3291	6.056236	GGTCTTGTTTGACTAGAGTTTCCTT	58.944	40.000	0.00	0.00	37.16	3.36
2157	3330	7.766278	ACATGGCAATATAGCTAGTTACTATGC	59.234	37.037	13.56	9.45	32.63	3.14
2163	3336	9.002600	CATTTCACATGGCAATATAGCTAGTTA	57.997	33.333	0.00	0.00	34.17	2.24
2202	3375	7.978975	CCTTAACAAAAACCAAACTCATGAGAA	59.021	33.333	29.27	6.63	0.00	2.87
2248	3421	6.909909	ACTGAGAATTGGTTAAATTTCGGTC	58.090	36.000	0.00	0.00	38.64	4.79
2251	3424	7.326063	GGTTGACTGAGAATTGGTTAAATTTCG	59.674	37.037	0.00	0.00	38.64	3.46
2265	3438	2.929641	TGTTGCATGGTTGACTGAGAA	58.070	42.857	0.00	0.00	0.00	2.87
2332	3505	3.616219	ACACTTTACAACCAGCAAGACA	58.384	40.909	0.00	0.00	0.00	3.41
2350	3523	0.736325	CAACCGATGAGGGACGACAC	60.736	60.000	0.00	0.00	46.96	3.67
2408	3581	5.637810	CGTTCTAACTGAAATGCTACAAGGA	59.362	40.000	0.00	0.00	36.30	3.36
2409	3582	5.163854	CCGTTCTAACTGAAATGCTACAAGG	60.164	44.000	0.00	0.00	36.30	3.61
2410	3583	5.408604	ACCGTTCTAACTGAAATGCTACAAG	59.591	40.000	0.00	0.00	36.30	3.16
2435	3608	5.627367	GCAAGCAACAACAATAAATACGACA	59.373	36.000	0.00	0.00	0.00	4.35
2440	3613	7.274468	CGGTATTGCAAGCAACAACAATAAATA	59.726	33.333	9.97	0.00	36.90	1.40
2545	3721	3.246416	AGGGTGTGTCTAGAACTCAGT	57.754	47.619	0.00	0.00	32.30	3.41
2583	3759	0.179018	AAAGGGAGCACAGAAAGCGT	60.179	50.000	0.00	0.00	37.01	5.07
2621	3797	0.469917	CAGGATCCATAACGCCAGGT	59.530	55.000	15.82	0.00	0.00	4.00
2632	3808	6.151663	CATTCAAATGCATAACAGGATCCA	57.848	37.500	15.82	0.00	0.00	3.41
2896	4072	1.587054	CCGACTGGAGTTCGAGCTT	59.413	57.895	2.39	0.00	37.49	3.74
2911	4087	2.672996	GCCTCTTTGCCTTGCCGA	60.673	61.111	0.00	0.00	0.00	5.54
2950	4126	3.799755	GGGCATTGGTCGTGACGC	61.800	66.667	0.00	0.00	0.00	5.19
3031	4207	1.482593	CCACTTGCCGATTCTCTAGGT	59.517	52.381	0.00	0.00	0.00	3.08

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.