Multiple sequence alignment - TraesCS3B01G572700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G572700 chr3B 100.000 2426 0 0 1 2426 803539158 803541583 0.000000e+00 4481
1 TraesCS3B01G572700 chr3B 94.295 1560 68 10 457 2001 803512559 803511006 0.000000e+00 2368
2 TraesCS3B01G572700 chr3B 92.992 1541 76 18 479 2001 803364477 803362951 0.000000e+00 2218
3 TraesCS3B01G572700 chr3B 92.862 1541 74 20 479 2001 803334586 803333064 0.000000e+00 2204
4 TraesCS3B01G572700 chr3B 92.278 1541 81 20 479 2001 803462210 803460690 0.000000e+00 2152
5 TraesCS3B01G572700 chr3B 92.082 1124 64 16 479 1589 803415343 803414232 0.000000e+00 1559
6 TraesCS3B01G572700 chr3B 96.311 488 16 2 1 488 803468130 803467645 0.000000e+00 800
7 TraesCS3B01G572700 chr3B 96.107 488 17 2 1 488 803421272 803420787 0.000000e+00 795
8 TraesCS3B01G572700 chr3B 83.912 777 75 28 1468 2220 804111707 804110957 0.000000e+00 697
9 TraesCS3B01G572700 chr3B 92.511 227 15 1 1993 2217 803324890 803324664 8.370000e-85 324
10 TraesCS3B01G572700 chr3B 92.070 227 16 1 1993 2217 803354510 803354284 3.890000e-83 318
11 TraesCS3B01G572700 chr3B 92.661 218 14 2 2209 2426 803442570 803442355 1.810000e-81 313
12 TraesCS3B01G572700 chr3B 92.661 218 15 1 2209 2426 803487208 803486992 1.810000e-81 313
13 TraesCS3B01G572700 chr3B 94.872 117 5 1 2209 2325 803315080 803314965 5.330000e-42 182
14 TraesCS3B01G572700 chrUn 92.819 1504 75 19 479 1964 303788919 303790407 0.000000e+00 2148
15 TraesCS3B01G572700 chrUn 92.819 1504 75 19 479 1964 308985224 308986712 0.000000e+00 2148
16 TraesCS3B01G572700 chrUn 92.349 1124 61 16 479 1589 291468967 291470078 0.000000e+00 1576
17 TraesCS3B01G572700 chrUn 96.107 488 17 2 1 488 291859025 291858540 0.000000e+00 795
18 TraesCS3B01G572700 chrUn 95.902 488 18 2 1 488 290626811 290626326 0.000000e+00 789
19 TraesCS3B01G572700 chrUn 92.875 393 17 8 1331 1720 480700978 480700594 5.860000e-156 560
20 TraesCS3B01G572700 chrUn 85.867 375 47 4 2053 2422 277306936 277306563 6.290000e-106 394
21 TraesCS3B01G572700 chrUn 92.952 227 14 1 1993 2217 292088140 292087914 1.800000e-86 329
22 TraesCS3B01G572700 chrUn 92.952 227 14 1 1993 2217 312304715 312304489 1.800000e-86 329
23 TraesCS3B01G572700 chrUn 93.119 218 14 1 2209 2426 306347977 306348193 3.890000e-83 318
24 TraesCS3B01G572700 chrUn 94.872 117 5 1 2209 2325 362123840 362123955 5.330000e-42 182
25 TraesCS3B01G572700 chrUn 94.872 117 5 1 2209 2325 362125891 362126006 5.330000e-42 182
26 TraesCS3B01G572700 chr3D 94.283 997 43 4 454 1440 596994414 596995406 0.000000e+00 1513
27 TraesCS3B01G572700 chr3D 89.457 645 47 5 1499 2137 596995429 596996058 0.000000e+00 795
28 TraesCS3B01G572700 chr3D 91.016 256 22 1 1489 1743 597264349 597264094 6.420000e-91 344
29 TraesCS3B01G572700 chr3A 93.124 1018 34 12 454 1438 727181145 727182159 0.000000e+00 1459
30 TraesCS3B01G572700 chr3A 92.974 982 32 13 491 1438 727185494 727186472 0.000000e+00 1397
31 TraesCS3B01G572700 chr3A 86.133 375 45 5 2053 2422 727187763 727188135 4.860000e-107 398
32 TraesCS3B01G572700 chr2D 95.111 450 22 0 3 452 400304419 400303970 0.000000e+00 710
33 TraesCS3B01G572700 chr2A 83.905 758 80 25 1489 2229 605312513 605313245 0.000000e+00 686
34 TraesCS3B01G572700 chr2A 90.000 460 36 7 1 453 755270009 755270465 9.660000e-164 586
35 TraesCS3B01G572700 chr1D 91.868 455 29 7 3 451 302733093 302732641 1.580000e-176 628
36 TraesCS3B01G572700 chr1A 89.520 458 38 5 1 451 482222990 482222536 2.710000e-159 571
37 TraesCS3B01G572700 chr6B 83.929 392 49 11 1 389 47462357 47462737 1.770000e-96 363


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G572700 chr3B 803539158 803541583 2425 False 4481.000000 4481 100.000000 1 2426 1 chr3B.!!$F1 2425
1 TraesCS3B01G572700 chr3B 803511006 803512559 1553 True 2368.000000 2368 94.295000 457 2001 1 chr3B.!!$R12 1544
2 TraesCS3B01G572700 chr3B 803362951 803364477 1526 True 2218.000000 2218 92.992000 479 2001 1 chr3B.!!$R5 1522
3 TraesCS3B01G572700 chr3B 803333064 803334586 1522 True 2204.000000 2204 92.862000 479 2001 1 chr3B.!!$R3 1522
4 TraesCS3B01G572700 chr3B 803460690 803462210 1520 True 2152.000000 2152 92.278000 479 2001 1 chr3B.!!$R9 1522
5 TraesCS3B01G572700 chr3B 803414232 803415343 1111 True 1559.000000 1559 92.082000 479 1589 1 chr3B.!!$R6 1110
6 TraesCS3B01G572700 chr3B 804110957 804111707 750 True 697.000000 697 83.912000 1468 2220 1 chr3B.!!$R13 752
7 TraesCS3B01G572700 chrUn 303788919 303790407 1488 False 2148.000000 2148 92.819000 479 1964 1 chrUn.!!$F2 1485
8 TraesCS3B01G572700 chrUn 308985224 308986712 1488 False 2148.000000 2148 92.819000 479 1964 1 chrUn.!!$F4 1485
9 TraesCS3B01G572700 chrUn 291468967 291470078 1111 False 1576.000000 1576 92.349000 479 1589 1 chrUn.!!$F1 1110
10 TraesCS3B01G572700 chr3D 596994414 596996058 1644 False 1154.000000 1513 91.870000 454 2137 2 chr3D.!!$F1 1683
11 TraesCS3B01G572700 chr3A 727181145 727188135 6990 False 1084.666667 1459 90.743667 454 2422 3 chr3A.!!$F1 1968
12 TraesCS3B01G572700 chr2A 605312513 605313245 732 False 686.000000 686 83.905000 1489 2229 1 chr2A.!!$F1 740

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
363 364 0.034059 CCGATCTCTTGGGGATTCGG 59.966 60.0 0.0 0.0 40.58 4.30 F
400 401 0.106419 AGGAGAAGCTACGGGAGAGG 60.106 60.0 0.0 0.0 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1239 1273 0.321564 CCGACAAGCCCTTGATGTCA 60.322 55.000 14.46 0.0 42.76 3.58 R
1881 6309 2.289133 GGCCTCTCTCAATATCGGGAAC 60.289 54.545 0.00 0.0 0.00 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.494918 GGTGGCGCTACGTCTGAT 59.505 61.111 18.14 0.00 30.55 2.90
18 19 1.589196 GGTGGCGCTACGTCTGATC 60.589 63.158 18.14 0.00 30.55 2.92
19 20 1.589196 GTGGCGCTACGTCTGATCC 60.589 63.158 8.55 0.00 30.55 3.36
20 21 2.353607 GGCGCTACGTCTGATCCG 60.354 66.667 7.64 0.00 0.00 4.18
21 22 2.408022 GCGCTACGTCTGATCCGT 59.592 61.111 0.00 1.23 42.06 4.69
22 23 1.654743 GCGCTACGTCTGATCCGTC 60.655 63.158 0.00 0.00 39.60 4.79
23 24 2.015382 CGCTACGTCTGATCCGTCT 58.985 57.895 0.00 0.00 39.60 4.18
24 25 1.215244 CGCTACGTCTGATCCGTCTA 58.785 55.000 0.00 0.00 39.60 2.59
25 26 1.192757 CGCTACGTCTGATCCGTCTAG 59.807 57.143 0.00 0.00 39.60 2.43
26 27 1.532007 GCTACGTCTGATCCGTCTAGG 59.468 57.143 0.00 0.00 39.60 3.02
34 35 3.736224 TCCGTCTAGGAGGCCGGT 61.736 66.667 1.90 0.00 45.98 5.28
35 36 3.528370 CCGTCTAGGAGGCCGGTG 61.528 72.222 1.90 0.00 45.00 4.94
36 37 2.439701 CGTCTAGGAGGCCGGTGA 60.440 66.667 1.90 0.00 0.00 4.02
37 38 1.828660 CGTCTAGGAGGCCGGTGAT 60.829 63.158 1.90 0.00 0.00 3.06
38 39 1.797211 CGTCTAGGAGGCCGGTGATC 61.797 65.000 1.90 0.00 0.00 2.92
39 40 0.468400 GTCTAGGAGGCCGGTGATCT 60.468 60.000 1.90 0.00 0.00 2.75
40 41 0.468214 TCTAGGAGGCCGGTGATCTG 60.468 60.000 1.90 0.00 0.00 2.90
41 42 2.093537 CTAGGAGGCCGGTGATCTGC 62.094 65.000 1.90 1.37 0.00 4.26
42 43 4.899239 GGAGGCCGGTGATCTGCG 62.899 72.222 1.90 0.00 0.00 5.18
47 48 3.842923 CCGGTGATCTGCGCTCCT 61.843 66.667 9.73 0.00 0.00 3.69
48 49 2.279120 CGGTGATCTGCGCTCCTC 60.279 66.667 9.73 2.63 0.00 3.71
49 50 2.279120 GGTGATCTGCGCTCCTCG 60.279 66.667 9.73 0.00 42.12 4.63
75 76 3.595819 GCATGACCTGTGCCTTCC 58.404 61.111 0.00 0.00 36.61 3.46
76 77 1.303561 GCATGACCTGTGCCTTCCA 60.304 57.895 0.00 0.00 36.61 3.53
77 78 0.682209 GCATGACCTGTGCCTTCCAT 60.682 55.000 0.00 0.00 36.61 3.41
78 79 1.408683 GCATGACCTGTGCCTTCCATA 60.409 52.381 0.00 0.00 36.61 2.74
79 80 2.569059 CATGACCTGTGCCTTCCATAG 58.431 52.381 0.00 0.00 32.91 2.23
95 96 7.035840 CTTCCATAGGATGAAATTGGTCTTG 57.964 40.000 0.00 0.00 0.00 3.02
96 97 5.448654 TCCATAGGATGAAATTGGTCTTGG 58.551 41.667 0.00 0.00 0.00 3.61
97 98 5.044179 TCCATAGGATGAAATTGGTCTTGGT 60.044 40.000 0.00 0.00 0.00 3.67
98 99 5.068198 CCATAGGATGAAATTGGTCTTGGTG 59.932 44.000 0.00 0.00 0.00 4.17
99 100 4.387026 AGGATGAAATTGGTCTTGGTGA 57.613 40.909 0.00 0.00 0.00 4.02
100 101 4.338879 AGGATGAAATTGGTCTTGGTGAG 58.661 43.478 0.00 0.00 0.00 3.51
101 102 3.119352 GGATGAAATTGGTCTTGGTGAGC 60.119 47.826 0.00 0.00 43.03 4.26
102 103 3.228188 TGAAATTGGTCTTGGTGAGCT 57.772 42.857 0.00 0.00 43.13 4.09
103 104 3.565307 TGAAATTGGTCTTGGTGAGCTT 58.435 40.909 0.00 0.00 43.13 3.74
104 105 3.569701 TGAAATTGGTCTTGGTGAGCTTC 59.430 43.478 0.00 0.00 43.13 3.86
105 106 3.515602 AATTGGTCTTGGTGAGCTTCT 57.484 42.857 0.00 0.00 43.13 2.85
106 107 2.550830 TTGGTCTTGGTGAGCTTCTC 57.449 50.000 0.00 0.00 43.13 2.87
107 108 1.722034 TGGTCTTGGTGAGCTTCTCT 58.278 50.000 0.00 0.00 43.13 3.10
108 109 1.345741 TGGTCTTGGTGAGCTTCTCTG 59.654 52.381 0.00 0.00 43.13 3.35
109 110 1.620819 GGTCTTGGTGAGCTTCTCTGA 59.379 52.381 0.00 0.00 39.86 3.27
110 111 2.235898 GGTCTTGGTGAGCTTCTCTGAT 59.764 50.000 0.00 0.00 39.86 2.90
111 112 3.260740 GTCTTGGTGAGCTTCTCTGATG 58.739 50.000 0.00 0.00 0.00 3.07
112 113 2.235650 TCTTGGTGAGCTTCTCTGATGG 59.764 50.000 0.00 0.00 0.00 3.51
113 114 0.907486 TGGTGAGCTTCTCTGATGGG 59.093 55.000 0.00 0.00 0.00 4.00
114 115 1.198713 GGTGAGCTTCTCTGATGGGA 58.801 55.000 0.00 0.00 0.00 4.37
115 116 1.138661 GGTGAGCTTCTCTGATGGGAG 59.861 57.143 0.00 0.00 34.88 4.30
116 117 2.106566 GTGAGCTTCTCTGATGGGAGA 58.893 52.381 0.00 0.00 40.16 3.71
117 118 2.101249 GTGAGCTTCTCTGATGGGAGAG 59.899 54.545 0.00 0.00 42.37 3.20
118 119 1.069049 GAGCTTCTCTGATGGGAGAGC 59.931 57.143 0.00 0.00 42.37 4.09
119 120 0.249405 GCTTCTCTGATGGGAGAGCG 60.249 60.000 0.00 0.00 42.37 5.03
120 121 0.249405 CTTCTCTGATGGGAGAGCGC 60.249 60.000 0.00 0.00 42.37 5.92
121 122 1.680522 TTCTCTGATGGGAGAGCGCC 61.681 60.000 2.29 0.00 42.37 6.53
122 123 2.364186 TCTGATGGGAGAGCGCCA 60.364 61.111 2.29 0.00 0.00 5.69
123 124 1.964608 CTCTGATGGGAGAGCGCCAA 61.965 60.000 2.29 0.00 33.37 4.52
124 125 1.523258 CTGATGGGAGAGCGCCAAG 60.523 63.158 2.29 0.00 0.00 3.61
125 126 2.203126 GATGGGAGAGCGCCAAGG 60.203 66.667 2.29 0.00 0.00 3.61
126 127 3.011517 ATGGGAGAGCGCCAAGGT 61.012 61.111 2.29 0.00 0.00 3.50
127 128 2.543067 GATGGGAGAGCGCCAAGGTT 62.543 60.000 2.29 0.00 0.00 3.50
128 129 2.747855 GGGAGAGCGCCAAGGTTG 60.748 66.667 2.29 0.00 0.00 3.77
129 130 2.347490 GGAGAGCGCCAAGGTTGA 59.653 61.111 2.29 0.00 0.00 3.18
130 131 1.743252 GGAGAGCGCCAAGGTTGAG 60.743 63.158 2.29 0.00 0.00 3.02
131 132 1.743252 GAGAGCGCCAAGGTTGAGG 60.743 63.158 2.29 0.00 0.00 3.86
132 133 2.747855 GAGCGCCAAGGTTGAGGG 60.748 66.667 2.29 0.00 0.00 4.30
133 134 3.249189 AGCGCCAAGGTTGAGGGA 61.249 61.111 2.29 0.00 0.00 4.20
134 135 2.747855 GCGCCAAGGTTGAGGGAG 60.748 66.667 0.00 0.00 0.00 4.30
135 136 3.068881 CGCCAAGGTTGAGGGAGA 58.931 61.111 0.00 0.00 0.00 3.71
136 137 1.376037 CGCCAAGGTTGAGGGAGAC 60.376 63.158 0.00 0.00 0.00 3.36
137 138 1.376037 GCCAAGGTTGAGGGAGACG 60.376 63.158 0.00 0.00 0.00 4.18
138 139 1.296715 CCAAGGTTGAGGGAGACGG 59.703 63.158 0.00 0.00 0.00 4.79
139 140 1.481056 CCAAGGTTGAGGGAGACGGT 61.481 60.000 0.00 0.00 0.00 4.83
140 141 0.396811 CAAGGTTGAGGGAGACGGTT 59.603 55.000 0.00 0.00 0.00 4.44
141 142 0.396811 AAGGTTGAGGGAGACGGTTG 59.603 55.000 0.00 0.00 0.00 3.77
142 143 0.471211 AGGTTGAGGGAGACGGTTGA 60.471 55.000 0.00 0.00 0.00 3.18
143 144 0.613777 GGTTGAGGGAGACGGTTGAT 59.386 55.000 0.00 0.00 0.00 2.57
144 145 1.676014 GGTTGAGGGAGACGGTTGATG 60.676 57.143 0.00 0.00 0.00 3.07
145 146 1.275291 GTTGAGGGAGACGGTTGATGA 59.725 52.381 0.00 0.00 0.00 2.92
146 147 0.895530 TGAGGGAGACGGTTGATGAC 59.104 55.000 0.00 0.00 0.00 3.06
147 148 0.179134 GAGGGAGACGGTTGATGACG 60.179 60.000 0.00 0.00 0.00 4.35
148 149 0.611062 AGGGAGACGGTTGATGACGA 60.611 55.000 0.00 0.00 0.00 4.20
149 150 0.458025 GGGAGACGGTTGATGACGAC 60.458 60.000 0.00 0.00 0.00 4.34
150 151 0.797249 GGAGACGGTTGATGACGACG 60.797 60.000 0.00 0.00 0.00 5.12
151 152 0.167470 GAGACGGTTGATGACGACGA 59.833 55.000 0.00 0.00 0.00 4.20
152 153 0.109873 AGACGGTTGATGACGACGAC 60.110 55.000 0.00 0.00 0.00 4.34
153 154 0.386352 GACGGTTGATGACGACGACA 60.386 55.000 0.00 0.88 0.00 4.35
154 155 0.242825 ACGGTTGATGACGACGACAT 59.757 50.000 12.50 12.50 0.00 3.06
155 156 0.640262 CGGTTGATGACGACGACATG 59.360 55.000 17.19 0.00 0.00 3.21
156 157 0.999406 GGTTGATGACGACGACATGG 59.001 55.000 17.19 0.00 0.00 3.66
157 158 0.370273 GTTGATGACGACGACATGGC 59.630 55.000 17.19 4.98 0.00 4.40
158 159 1.075979 TTGATGACGACGACATGGCG 61.076 55.000 21.98 21.98 37.29 5.69
159 160 1.226575 GATGACGACGACATGGCGA 60.227 57.895 31.27 4.41 34.83 5.54
160 161 1.202973 GATGACGACGACATGGCGAG 61.203 60.000 31.27 22.82 34.83 5.03
161 162 2.579787 GACGACGACATGGCGAGG 60.580 66.667 31.27 20.69 34.83 4.63
162 163 4.129737 ACGACGACATGGCGAGGG 62.130 66.667 31.27 18.01 34.83 4.30
163 164 4.129737 CGACGACATGGCGAGGGT 62.130 66.667 31.27 4.17 34.83 4.34
164 165 2.509336 GACGACATGGCGAGGGTG 60.509 66.667 31.27 0.00 34.83 4.61
165 166 2.994995 ACGACATGGCGAGGGTGA 60.995 61.111 31.27 0.00 34.83 4.02
166 167 2.202797 CGACATGGCGAGGGTGAG 60.203 66.667 18.41 0.00 0.00 3.51
167 168 2.512515 GACATGGCGAGGGTGAGC 60.513 66.667 0.00 0.00 0.00 4.26
168 169 4.457496 ACATGGCGAGGGTGAGCG 62.457 66.667 0.00 0.00 0.00 5.03
169 170 4.147449 CATGGCGAGGGTGAGCGA 62.147 66.667 0.00 0.00 0.00 4.93
170 171 3.842923 ATGGCGAGGGTGAGCGAG 61.843 66.667 0.00 0.00 0.00 5.03
173 174 3.760035 GCGAGGGTGAGCGAGGAA 61.760 66.667 0.00 0.00 0.00 3.36
174 175 2.492090 CGAGGGTGAGCGAGGAAG 59.508 66.667 0.00 0.00 0.00 3.46
175 176 2.896443 GAGGGTGAGCGAGGAAGG 59.104 66.667 0.00 0.00 0.00 3.46
176 177 1.682684 GAGGGTGAGCGAGGAAGGA 60.683 63.158 0.00 0.00 0.00 3.36
177 178 1.002274 AGGGTGAGCGAGGAAGGAT 59.998 57.895 0.00 0.00 0.00 3.24
178 179 1.144936 GGGTGAGCGAGGAAGGATG 59.855 63.158 0.00 0.00 0.00 3.51
179 180 1.144936 GGTGAGCGAGGAAGGATGG 59.855 63.158 0.00 0.00 0.00 3.51
180 181 1.522580 GTGAGCGAGGAAGGATGGC 60.523 63.158 0.00 0.00 0.00 4.40
181 182 2.279784 GAGCGAGGAAGGATGGCG 60.280 66.667 0.00 0.00 0.00 5.69
182 183 2.759973 AGCGAGGAAGGATGGCGA 60.760 61.111 0.00 0.00 0.00 5.54
183 184 2.279784 GCGAGGAAGGATGGCGAG 60.280 66.667 0.00 0.00 0.00 5.03
184 185 2.419198 CGAGGAAGGATGGCGAGG 59.581 66.667 0.00 0.00 0.00 4.63
185 186 2.825264 GAGGAAGGATGGCGAGGG 59.175 66.667 0.00 0.00 0.00 4.30
186 187 3.468326 GAGGAAGGATGGCGAGGGC 62.468 68.421 0.00 0.00 38.90 5.19
187 188 4.918201 GGAAGGATGGCGAGGGCG 62.918 72.222 0.00 0.00 41.24 6.13
188 189 3.849951 GAAGGATGGCGAGGGCGA 61.850 66.667 0.00 0.00 41.24 5.54
189 190 3.164269 AAGGATGGCGAGGGCGAT 61.164 61.111 0.00 0.00 40.58 4.58
192 193 3.978491 GATGGCGAGGGCGATCGA 61.978 66.667 21.57 0.00 43.07 3.59
193 194 3.905705 GATGGCGAGGGCGATCGAG 62.906 68.421 21.57 4.99 43.07 4.04
196 197 3.900892 GCGAGGGCGATCGAGGAA 61.901 66.667 21.57 0.00 45.56 3.36
197 198 2.333225 CGAGGGCGATCGAGGAAG 59.667 66.667 21.57 2.43 45.56 3.46
198 199 2.731374 GAGGGCGATCGAGGAAGG 59.269 66.667 21.57 0.00 0.00 3.46
199 200 1.828660 GAGGGCGATCGAGGAAGGA 60.829 63.158 21.57 0.00 0.00 3.36
200 201 1.801309 GAGGGCGATCGAGGAAGGAG 61.801 65.000 21.57 0.00 0.00 3.69
201 202 2.731374 GGCGATCGAGGAAGGAGG 59.269 66.667 21.57 0.00 0.00 4.30
202 203 2.128507 GGCGATCGAGGAAGGAGGT 61.129 63.158 21.57 0.00 0.00 3.85
203 204 0.822532 GGCGATCGAGGAAGGAGGTA 60.823 60.000 21.57 0.00 0.00 3.08
204 205 0.594110 GCGATCGAGGAAGGAGGTAG 59.406 60.000 21.57 0.00 0.00 3.18
205 206 0.594110 CGATCGAGGAAGGAGGTAGC 59.406 60.000 10.26 0.00 0.00 3.58
206 207 1.816183 CGATCGAGGAAGGAGGTAGCT 60.816 57.143 10.26 0.00 0.00 3.32
207 208 1.611491 GATCGAGGAAGGAGGTAGCTG 59.389 57.143 0.00 0.00 0.00 4.24
208 209 0.395862 TCGAGGAAGGAGGTAGCTGG 60.396 60.000 0.00 0.00 0.00 4.85
209 210 1.826709 GAGGAAGGAGGTAGCTGGC 59.173 63.158 0.00 0.00 0.00 4.85
210 211 0.689412 GAGGAAGGAGGTAGCTGGCT 60.689 60.000 0.00 0.00 0.00 4.75
211 212 0.637195 AGGAAGGAGGTAGCTGGCTA 59.363 55.000 0.00 0.00 0.00 3.93
212 213 1.044611 GGAAGGAGGTAGCTGGCTAG 58.955 60.000 0.00 0.00 0.00 3.42
213 214 1.411787 GGAAGGAGGTAGCTGGCTAGA 60.412 57.143 0.00 0.00 0.00 2.43
214 215 2.604139 GAAGGAGGTAGCTGGCTAGAT 58.396 52.381 0.00 0.00 0.00 1.98
215 216 2.302587 AGGAGGTAGCTGGCTAGATC 57.697 55.000 0.00 4.40 0.00 2.75
216 217 0.885196 GGAGGTAGCTGGCTAGATCG 59.115 60.000 0.00 0.00 0.00 3.69
217 218 1.545875 GGAGGTAGCTGGCTAGATCGA 60.546 57.143 0.00 0.00 0.00 3.59
218 219 2.442413 GAGGTAGCTGGCTAGATCGAT 58.558 52.381 0.00 0.00 0.00 3.59
219 220 3.611970 GAGGTAGCTGGCTAGATCGATA 58.388 50.000 0.00 0.00 0.00 2.92
220 221 3.616219 AGGTAGCTGGCTAGATCGATAG 58.384 50.000 0.00 0.00 0.00 2.08
221 222 2.685897 GGTAGCTGGCTAGATCGATAGG 59.314 54.545 0.00 0.00 0.00 2.57
222 223 2.889170 AGCTGGCTAGATCGATAGGA 57.111 50.000 0.00 0.00 0.00 2.94
223 224 3.162147 AGCTGGCTAGATCGATAGGAA 57.838 47.619 0.00 0.00 0.00 3.36
224 225 3.088532 AGCTGGCTAGATCGATAGGAAG 58.911 50.000 0.00 0.00 0.00 3.46
225 226 3.085533 GCTGGCTAGATCGATAGGAAGA 58.914 50.000 0.00 0.00 0.00 2.87
226 227 3.128589 GCTGGCTAGATCGATAGGAAGAG 59.871 52.174 0.00 0.00 0.00 2.85
227 228 3.691575 TGGCTAGATCGATAGGAAGAGG 58.308 50.000 0.00 0.00 0.00 3.69
228 229 3.330998 TGGCTAGATCGATAGGAAGAGGA 59.669 47.826 0.00 0.00 0.00 3.71
229 230 4.017958 TGGCTAGATCGATAGGAAGAGGAT 60.018 45.833 0.00 0.00 0.00 3.24
230 231 4.338118 GGCTAGATCGATAGGAAGAGGATG 59.662 50.000 0.00 0.00 0.00 3.51
231 232 4.338118 GCTAGATCGATAGGAAGAGGATGG 59.662 50.000 0.00 0.00 0.00 3.51
232 233 3.096092 AGATCGATAGGAAGAGGATGGC 58.904 50.000 0.00 0.00 0.00 4.40
233 234 2.685106 TCGATAGGAAGAGGATGGCT 57.315 50.000 0.00 0.00 0.00 4.75
234 235 2.520069 TCGATAGGAAGAGGATGGCTC 58.480 52.381 0.00 0.00 0.00 4.70
235 236 2.109128 TCGATAGGAAGAGGATGGCTCT 59.891 50.000 0.00 0.00 0.00 4.09
236 237 2.230992 CGATAGGAAGAGGATGGCTCTG 59.769 54.545 0.00 0.00 0.00 3.35
237 238 2.856760 TAGGAAGAGGATGGCTCTGT 57.143 50.000 0.00 0.00 0.00 3.41
238 239 2.856760 AGGAAGAGGATGGCTCTGTA 57.143 50.000 0.00 0.00 0.00 2.74
239 240 3.342926 AGGAAGAGGATGGCTCTGTAT 57.657 47.619 0.00 0.00 0.00 2.29
240 241 4.477536 AGGAAGAGGATGGCTCTGTATA 57.522 45.455 0.00 0.00 0.00 1.47
241 242 4.156477 AGGAAGAGGATGGCTCTGTATAC 58.844 47.826 0.00 0.00 0.00 1.47
242 243 3.259625 GGAAGAGGATGGCTCTGTATACC 59.740 52.174 0.00 0.00 0.00 2.73
243 244 3.619900 AGAGGATGGCTCTGTATACCA 57.380 47.619 0.00 0.00 37.99 3.25
244 245 4.139162 AGAGGATGGCTCTGTATACCAT 57.861 45.455 0.00 0.00 46.82 3.55
245 246 3.837146 AGAGGATGGCTCTGTATACCATG 59.163 47.826 0.00 0.00 44.20 3.66
246 247 3.580458 GAGGATGGCTCTGTATACCATGT 59.420 47.826 0.00 0.00 44.20 3.21
247 248 3.976654 AGGATGGCTCTGTATACCATGTT 59.023 43.478 0.00 0.00 44.20 2.71
248 249 5.155161 AGGATGGCTCTGTATACCATGTTA 58.845 41.667 0.00 0.00 44.20 2.41
249 250 5.247110 AGGATGGCTCTGTATACCATGTTAG 59.753 44.000 0.00 0.00 44.20 2.34
250 251 5.246203 GGATGGCTCTGTATACCATGTTAGA 59.754 44.000 0.00 0.00 44.20 2.10
251 252 6.070538 GGATGGCTCTGTATACCATGTTAGAT 60.071 42.308 0.00 0.00 44.20 1.98
252 253 6.101650 TGGCTCTGTATACCATGTTAGATG 57.898 41.667 0.00 0.00 0.00 2.90
253 254 5.012046 TGGCTCTGTATACCATGTTAGATGG 59.988 44.000 6.86 6.86 44.54 3.51
254 255 5.482908 GCTCTGTATACCATGTTAGATGGG 58.517 45.833 13.08 0.00 43.32 4.00
255 256 5.246203 GCTCTGTATACCATGTTAGATGGGA 59.754 44.000 13.08 4.34 43.32 4.37
256 257 6.239600 GCTCTGTATACCATGTTAGATGGGAA 60.240 42.308 13.08 1.02 43.32 3.97
257 258 7.303182 TCTGTATACCATGTTAGATGGGAAG 57.697 40.000 13.08 0.00 43.32 3.46
258 259 5.865085 TGTATACCATGTTAGATGGGAAGC 58.135 41.667 13.08 2.56 43.32 3.86
259 260 5.368230 TGTATACCATGTTAGATGGGAAGCA 59.632 40.000 13.08 5.06 43.32 3.91
260 261 3.959495 ACCATGTTAGATGGGAAGCAT 57.041 42.857 13.08 0.00 43.32 3.79
261 262 4.255510 ACCATGTTAGATGGGAAGCATT 57.744 40.909 13.08 0.00 43.32 3.56
262 263 4.210331 ACCATGTTAGATGGGAAGCATTC 58.790 43.478 13.08 0.00 46.67 2.67
275 276 3.737850 GAAGCATTCCTACTCCCTCATG 58.262 50.000 0.00 0.00 39.83 3.07
276 277 3.051940 AGCATTCCTACTCCCTCATGA 57.948 47.619 0.00 0.00 0.00 3.07
277 278 2.971330 AGCATTCCTACTCCCTCATGAG 59.029 50.000 16.24 16.24 38.37 2.90
278 279 7.483356 GAAGCATTCCTACTCCCTCATGAGG 62.483 52.000 31.69 31.69 43.19 3.86
286 287 4.598894 CCTCATGAGGGAGCCGCG 62.599 72.222 31.14 0.00 44.87 6.46
287 288 3.842923 CTCATGAGGGAGCCGCGT 61.843 66.667 15.38 0.00 0.00 6.01
288 289 4.147449 TCATGAGGGAGCCGCGTG 62.147 66.667 4.92 0.00 40.78 5.34
299 300 3.850207 GCCGCGTGCGTATATATTG 57.150 52.632 13.70 0.00 37.81 1.90
300 301 1.342555 GCCGCGTGCGTATATATTGA 58.657 50.000 13.70 0.00 37.81 2.57
301 302 1.924524 GCCGCGTGCGTATATATTGAT 59.075 47.619 13.70 0.00 37.81 2.57
302 303 2.034842 GCCGCGTGCGTATATATTGATC 60.035 50.000 13.70 0.00 37.81 2.92
303 304 3.435566 CCGCGTGCGTATATATTGATCT 58.564 45.455 13.70 0.00 37.81 2.75
304 305 3.240631 CCGCGTGCGTATATATTGATCTG 59.759 47.826 13.70 0.00 37.81 2.90
305 306 4.095610 CGCGTGCGTATATATTGATCTGA 58.904 43.478 6.00 0.00 34.35 3.27
306 307 4.203160 CGCGTGCGTATATATTGATCTGAG 59.797 45.833 6.00 0.00 34.35 3.35
307 308 4.500837 GCGTGCGTATATATTGATCTGAGG 59.499 45.833 0.00 0.00 0.00 3.86
308 309 4.500837 CGTGCGTATATATTGATCTGAGGC 59.499 45.833 0.00 0.00 0.00 4.70
309 310 5.410924 GTGCGTATATATTGATCTGAGGCA 58.589 41.667 0.00 0.00 0.00 4.75
310 311 5.518128 GTGCGTATATATTGATCTGAGGCAG 59.482 44.000 0.00 0.00 0.00 4.85
311 312 5.046529 GCGTATATATTGATCTGAGGCAGG 58.953 45.833 0.00 0.00 31.51 4.85
312 313 5.163509 GCGTATATATTGATCTGAGGCAGGA 60.164 44.000 0.00 0.00 31.51 3.86
313 314 6.628175 GCGTATATATTGATCTGAGGCAGGAA 60.628 42.308 0.00 0.00 31.51 3.36
314 315 7.323420 CGTATATATTGATCTGAGGCAGGAAA 58.677 38.462 0.00 0.00 31.51 3.13
315 316 7.490725 CGTATATATTGATCTGAGGCAGGAAAG 59.509 40.741 0.00 0.00 31.51 2.62
316 317 2.795231 TTGATCTGAGGCAGGAAAGG 57.205 50.000 0.00 0.00 31.51 3.11
317 318 0.254178 TGATCTGAGGCAGGAAAGGC 59.746 55.000 0.00 0.00 31.51 4.35
334 335 4.028490 CCCCTGCCGTGGCTTACA 62.028 66.667 12.84 0.00 42.51 2.41
335 336 2.033448 CCCTGCCGTGGCTTACAA 59.967 61.111 12.84 0.00 42.51 2.41
336 337 2.040544 CCCTGCCGTGGCTTACAAG 61.041 63.158 12.84 0.17 42.51 3.16
345 346 2.740447 CGTGGCTTACAAGGAGTTTACC 59.260 50.000 0.00 0.00 0.00 2.85
346 347 2.740447 GTGGCTTACAAGGAGTTTACCG 59.260 50.000 0.00 0.00 34.73 4.02
347 348 2.633967 TGGCTTACAAGGAGTTTACCGA 59.366 45.455 0.00 0.00 34.73 4.69
348 349 3.262405 TGGCTTACAAGGAGTTTACCGAT 59.738 43.478 0.00 0.00 34.73 4.18
349 350 3.869832 GGCTTACAAGGAGTTTACCGATC 59.130 47.826 0.00 0.00 34.73 3.69
350 351 4.382793 GGCTTACAAGGAGTTTACCGATCT 60.383 45.833 0.00 0.00 34.73 2.75
351 352 4.804665 GCTTACAAGGAGTTTACCGATCTC 59.195 45.833 0.00 0.00 34.73 2.75
352 353 5.394333 GCTTACAAGGAGTTTACCGATCTCT 60.394 44.000 0.00 0.00 34.73 3.10
353 354 6.600882 TTACAAGGAGTTTACCGATCTCTT 57.399 37.500 0.00 0.00 34.73 2.85
354 355 4.822026 ACAAGGAGTTTACCGATCTCTTG 58.178 43.478 0.00 0.00 34.73 3.02
355 356 4.184629 CAAGGAGTTTACCGATCTCTTGG 58.815 47.826 0.00 0.00 34.73 3.61
356 357 2.766828 AGGAGTTTACCGATCTCTTGGG 59.233 50.000 0.00 0.00 34.73 4.12
357 358 2.158943 GGAGTTTACCGATCTCTTGGGG 60.159 54.545 0.00 0.00 0.00 4.96
358 359 2.764572 GAGTTTACCGATCTCTTGGGGA 59.235 50.000 0.00 0.00 0.00 4.81
359 360 3.385115 AGTTTACCGATCTCTTGGGGAT 58.615 45.455 0.00 0.00 0.00 3.85
360 361 3.780850 AGTTTACCGATCTCTTGGGGATT 59.219 43.478 0.00 0.00 0.00 3.01
361 362 4.127907 GTTTACCGATCTCTTGGGGATTC 58.872 47.826 0.00 0.00 0.00 2.52
362 363 0.753262 ACCGATCTCTTGGGGATTCG 59.247 55.000 0.00 0.00 32.69 3.34
363 364 0.034059 CCGATCTCTTGGGGATTCGG 59.966 60.000 0.00 0.00 40.58 4.30
364 365 0.753262 CGATCTCTTGGGGATTCGGT 59.247 55.000 0.00 0.00 0.00 4.69
365 366 1.139058 CGATCTCTTGGGGATTCGGTT 59.861 52.381 0.00 0.00 0.00 4.44
366 367 2.420129 CGATCTCTTGGGGATTCGGTTT 60.420 50.000 0.00 0.00 0.00 3.27
367 368 2.489938 TCTCTTGGGGATTCGGTTTG 57.510 50.000 0.00 0.00 0.00 2.93
368 369 1.702957 TCTCTTGGGGATTCGGTTTGT 59.297 47.619 0.00 0.00 0.00 2.83
369 370 2.107552 TCTCTTGGGGATTCGGTTTGTT 59.892 45.455 0.00 0.00 0.00 2.83
370 371 3.328343 TCTCTTGGGGATTCGGTTTGTTA 59.672 43.478 0.00 0.00 0.00 2.41
371 372 3.414269 TCTTGGGGATTCGGTTTGTTAC 58.586 45.455 0.00 0.00 0.00 2.50
372 373 2.953284 TGGGGATTCGGTTTGTTACA 57.047 45.000 0.00 0.00 0.00 2.41
373 374 3.225177 TGGGGATTCGGTTTGTTACAA 57.775 42.857 0.00 0.00 0.00 2.41
374 375 3.563223 TGGGGATTCGGTTTGTTACAAA 58.437 40.909 6.41 6.41 0.00 2.83
375 376 3.570550 TGGGGATTCGGTTTGTTACAAAG 59.429 43.478 11.07 0.83 0.00 2.77
376 377 3.057104 GGGGATTCGGTTTGTTACAAAGG 60.057 47.826 11.07 6.62 0.00 3.11
377 378 3.822167 GGGATTCGGTTTGTTACAAAGGA 59.178 43.478 11.07 8.83 0.00 3.36
378 379 4.082949 GGGATTCGGTTTGTTACAAAGGAG 60.083 45.833 11.07 5.88 0.00 3.69
379 380 4.758165 GGATTCGGTTTGTTACAAAGGAGA 59.242 41.667 11.07 8.02 0.00 3.71
380 381 5.414765 GGATTCGGTTTGTTACAAAGGAGAT 59.585 40.000 11.07 3.95 0.00 2.75
381 382 6.596497 GGATTCGGTTTGTTACAAAGGAGATA 59.404 38.462 11.07 0.00 0.00 1.98
382 383 7.201617 GGATTCGGTTTGTTACAAAGGAGATAG 60.202 40.741 11.07 0.00 0.00 2.08
383 384 5.484715 TCGGTTTGTTACAAAGGAGATAGG 58.515 41.667 11.07 0.00 0.00 2.57
384 385 5.246656 TCGGTTTGTTACAAAGGAGATAGGA 59.753 40.000 11.07 0.00 0.00 2.94
385 386 5.581085 CGGTTTGTTACAAAGGAGATAGGAG 59.419 44.000 11.07 0.00 0.00 3.69
386 387 6.573680 CGGTTTGTTACAAAGGAGATAGGAGA 60.574 42.308 11.07 0.00 0.00 3.71
387 388 7.166167 GGTTTGTTACAAAGGAGATAGGAGAA 58.834 38.462 11.07 0.00 0.00 2.87
388 389 7.334671 GGTTTGTTACAAAGGAGATAGGAGAAG 59.665 40.741 11.07 0.00 0.00 2.85
389 390 5.978814 TGTTACAAAGGAGATAGGAGAAGC 58.021 41.667 0.00 0.00 0.00 3.86
390 391 5.721960 TGTTACAAAGGAGATAGGAGAAGCT 59.278 40.000 0.00 0.00 0.00 3.74
391 392 6.895756 TGTTACAAAGGAGATAGGAGAAGCTA 59.104 38.462 0.00 0.00 0.00 3.32
392 393 5.862678 ACAAAGGAGATAGGAGAAGCTAC 57.137 43.478 0.00 0.00 0.00 3.58
393 394 4.339814 ACAAAGGAGATAGGAGAAGCTACG 59.660 45.833 0.00 0.00 0.00 3.51
394 395 3.149005 AGGAGATAGGAGAAGCTACGG 57.851 52.381 0.00 0.00 0.00 4.02
395 396 2.164338 GGAGATAGGAGAAGCTACGGG 58.836 57.143 0.00 0.00 0.00 5.28
396 397 2.224818 GGAGATAGGAGAAGCTACGGGA 60.225 54.545 0.00 0.00 0.00 5.14
397 398 3.078837 GAGATAGGAGAAGCTACGGGAG 58.921 54.545 0.00 0.00 0.00 4.30
398 399 2.712087 AGATAGGAGAAGCTACGGGAGA 59.288 50.000 0.00 0.00 0.00 3.71
399 400 2.642154 TAGGAGAAGCTACGGGAGAG 57.358 55.000 0.00 0.00 0.00 3.20
400 401 0.106419 AGGAGAAGCTACGGGAGAGG 60.106 60.000 0.00 0.00 0.00 3.69
401 402 0.106619 GGAGAAGCTACGGGAGAGGA 60.107 60.000 0.00 0.00 0.00 3.71
402 403 1.685491 GGAGAAGCTACGGGAGAGGAA 60.685 57.143 0.00 0.00 0.00 3.36
403 404 1.679153 GAGAAGCTACGGGAGAGGAAG 59.321 57.143 0.00 0.00 0.00 3.46
404 405 1.285373 AGAAGCTACGGGAGAGGAAGA 59.715 52.381 0.00 0.00 0.00 2.87
405 406 2.091555 AGAAGCTACGGGAGAGGAAGAT 60.092 50.000 0.00 0.00 0.00 2.40
406 407 1.698506 AGCTACGGGAGAGGAAGATG 58.301 55.000 0.00 0.00 0.00 2.90
407 408 1.063567 AGCTACGGGAGAGGAAGATGT 60.064 52.381 0.00 0.00 0.00 3.06
408 409 2.175069 AGCTACGGGAGAGGAAGATGTA 59.825 50.000 0.00 0.00 0.00 2.29
409 410 2.554893 GCTACGGGAGAGGAAGATGTAG 59.445 54.545 0.00 0.00 0.00 2.74
410 411 3.748027 GCTACGGGAGAGGAAGATGTAGA 60.748 52.174 0.00 0.00 31.75 2.59
411 412 3.383698 ACGGGAGAGGAAGATGTAGAA 57.616 47.619 0.00 0.00 0.00 2.10
412 413 3.917300 ACGGGAGAGGAAGATGTAGAAT 58.083 45.455 0.00 0.00 0.00 2.40
413 414 3.892588 ACGGGAGAGGAAGATGTAGAATC 59.107 47.826 0.00 0.00 0.00 2.52
414 415 3.891977 CGGGAGAGGAAGATGTAGAATCA 59.108 47.826 0.00 0.00 0.00 2.57
415 416 4.022416 CGGGAGAGGAAGATGTAGAATCAG 60.022 50.000 0.00 0.00 0.00 2.90
416 417 4.898861 GGGAGAGGAAGATGTAGAATCAGT 59.101 45.833 0.00 0.00 0.00 3.41
417 418 5.365314 GGGAGAGGAAGATGTAGAATCAGTT 59.635 44.000 0.00 0.00 0.00 3.16
418 419 6.126911 GGGAGAGGAAGATGTAGAATCAGTTT 60.127 42.308 0.00 0.00 0.00 2.66
419 420 7.334858 GGAGAGGAAGATGTAGAATCAGTTTT 58.665 38.462 0.00 0.00 0.00 2.43
420 421 8.478877 GGAGAGGAAGATGTAGAATCAGTTTTA 58.521 37.037 0.00 0.00 0.00 1.52
421 422 9.528018 GAGAGGAAGATGTAGAATCAGTTTTAG 57.472 37.037 0.00 0.00 0.00 1.85
422 423 9.261035 AGAGGAAGATGTAGAATCAGTTTTAGA 57.739 33.333 0.00 0.00 0.00 2.10
610 611 2.280592 GTGACGGTCCAAGGCGTT 60.281 61.111 5.55 0.00 0.00 4.84
751 752 1.434622 GCACCTCCGACATGCTCATG 61.435 60.000 8.21 8.21 44.15 3.07
769 770 2.045926 AGGGACATCAAGTGCGGC 60.046 61.111 0.00 0.00 39.86 6.53
862 873 8.815912 ACCTTTTGATAGATAGCATTGGTTTTT 58.184 29.630 0.00 0.00 0.00 1.94
874 885 3.795561 TTGGTTTTTGTGTTTGCGTTG 57.204 38.095 0.00 0.00 0.00 4.10
1101 1112 2.033602 AACTACTGCCCCCGCAAC 59.966 61.111 0.00 0.00 46.66 4.17
1161 1181 4.816392 TCTACATGCAACTACACGTGATT 58.184 39.130 25.01 10.53 0.00 2.57
1174 1208 8.543862 ACTACACGTGATTGATCGACTATATA 57.456 34.615 25.01 0.00 0.00 0.86
1293 1327 0.463654 TGAAGTTCAACTGCAGCGGT 60.464 50.000 15.27 0.00 25.97 5.68
1299 1333 0.036164 TCAACTGCAGCGGTACCAAT 59.964 50.000 15.27 0.00 0.00 3.16
1487 5908 2.673368 CCTTCCACAGTTGCGTAAGATC 59.327 50.000 0.00 0.00 43.02 2.75
1733 6154 7.528481 AATTTGTGAGCGTATATGTTTACGA 57.472 32.000 8.08 0.00 46.02 3.43
1903 6332 0.610687 CCCGATATTGAGAGAGGCCC 59.389 60.000 0.00 0.00 0.00 5.80
1931 6361 1.876156 CTTTGTCAACAGCCTCCTCAC 59.124 52.381 0.00 0.00 0.00 3.51
1951 6385 6.182507 TCACCTTACTATGTCAAACAACCT 57.817 37.500 0.00 0.00 0.00 3.50
1952 6386 7.305813 TCACCTTACTATGTCAAACAACCTA 57.694 36.000 0.00 0.00 0.00 3.08
2022 6456 8.826710 TGTTATAACGATCAAAATGCCTTCTAG 58.173 33.333 10.92 0.00 0.00 2.43
2027 6461 1.004277 TCAAAATGCCTTCTAGCCGGT 59.996 47.619 1.90 0.00 0.00 5.28
2125 7228 3.254024 AACCCGAGCGAGTGCCATT 62.254 57.895 0.00 0.00 44.31 3.16
2127 7230 3.197790 CCGAGCGAGTGCCATTGG 61.198 66.667 0.00 0.00 44.31 3.16
2146 7249 7.922811 GCCATTGGAAAATCAATTAGACTTAGG 59.077 37.037 6.95 0.00 35.40 2.69
2201 7315 2.670019 AGGGTTAGTTTGGGTGAACC 57.330 50.000 0.00 0.00 40.58 3.62
2202 7316 1.202842 AGGGTTAGTTTGGGTGAACCG 60.203 52.381 0.00 0.00 44.64 4.44
2205 7319 3.475575 GGTTAGTTTGGGTGAACCGTAA 58.524 45.455 0.00 0.00 44.64 3.18
2225 7339 8.819974 ACCGTAAGTATATTTAAAACCGTGATG 58.180 33.333 0.00 0.00 0.00 3.07
2238 7352 4.280436 ACCGTGATGATGTAAAACCTCA 57.720 40.909 0.00 0.00 0.00 3.86
2248 7362 9.736023 GATGATGTAAAACCTCAATATTCCAAC 57.264 33.333 0.00 0.00 0.00 3.77
2249 7363 7.757526 TGATGTAAAACCTCAATATTCCAACG 58.242 34.615 0.00 0.00 0.00 4.10
2251 7365 7.136289 TGTAAAACCTCAATATTCCAACGTC 57.864 36.000 0.00 0.00 0.00 4.34
2252 7366 6.938030 TGTAAAACCTCAATATTCCAACGTCT 59.062 34.615 0.00 0.00 0.00 4.18
2258 7372 6.070995 ACCTCAATATTCCAACGTCTGAGTAA 60.071 38.462 0.00 0.00 0.00 2.24
2268 7382 7.383687 TCCAACGTCTGAGTAATGAATACTTT 58.616 34.615 0.00 0.00 45.00 2.66
2269 7383 7.876068 TCCAACGTCTGAGTAATGAATACTTTT 59.124 33.333 0.00 0.00 45.00 2.27
2270 7384 7.957484 CCAACGTCTGAGTAATGAATACTTTTG 59.043 37.037 0.00 0.00 45.00 2.44
2296 7410 9.575783 GTTTATGAAAACTTGTGTGGTTTAGAA 57.424 29.630 0.00 0.00 41.52 2.10
2351 7466 6.599445 ACTACAGTATTGGAGATACTACGGT 58.401 40.000 4.15 0.00 37.46 4.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.589196 GATCAGACGTAGCGCCACC 60.589 63.158 2.29 0.00 0.00 4.61
1 2 1.589196 GGATCAGACGTAGCGCCAC 60.589 63.158 2.29 0.00 0.00 5.01
2 3 2.805546 GGATCAGACGTAGCGCCA 59.194 61.111 2.29 0.00 0.00 5.69
3 4 2.353607 CGGATCAGACGTAGCGCC 60.354 66.667 2.29 0.00 0.00 6.53
4 5 1.654743 GACGGATCAGACGTAGCGC 60.655 63.158 0.00 0.00 45.68 5.92
5 6 1.192757 CTAGACGGATCAGACGTAGCG 59.807 57.143 0.00 0.00 45.68 4.26
6 7 1.532007 CCTAGACGGATCAGACGTAGC 59.468 57.143 0.00 0.00 45.68 3.58
7 8 3.061322 CTCCTAGACGGATCAGACGTAG 58.939 54.545 0.00 0.00 45.68 3.51
8 9 2.224233 CCTCCTAGACGGATCAGACGTA 60.224 54.545 0.00 0.00 45.68 3.57
10 11 1.231221 CCTCCTAGACGGATCAGACG 58.769 60.000 0.00 0.00 42.12 4.18
11 12 0.955905 GCCTCCTAGACGGATCAGAC 59.044 60.000 0.00 0.00 42.12 3.51
12 13 0.178987 GGCCTCCTAGACGGATCAGA 60.179 60.000 0.00 0.00 42.12 3.27
13 14 1.519751 CGGCCTCCTAGACGGATCAG 61.520 65.000 0.00 0.00 42.12 2.90
14 15 1.528542 CGGCCTCCTAGACGGATCA 60.529 63.158 0.00 0.00 42.12 2.92
15 16 3.356837 CGGCCTCCTAGACGGATC 58.643 66.667 0.00 0.00 42.12 3.36
19 20 1.797211 GATCACCGGCCTCCTAGACG 61.797 65.000 0.00 0.00 0.00 4.18
20 21 0.468400 AGATCACCGGCCTCCTAGAC 60.468 60.000 0.00 0.00 0.00 2.59
21 22 0.468214 CAGATCACCGGCCTCCTAGA 60.468 60.000 0.00 0.00 0.00 2.43
22 23 2.045280 CAGATCACCGGCCTCCTAG 58.955 63.158 0.00 0.00 0.00 3.02
23 24 2.134287 GCAGATCACCGGCCTCCTA 61.134 63.158 0.00 0.00 0.00 2.94
24 25 3.474570 GCAGATCACCGGCCTCCT 61.475 66.667 0.00 0.00 0.00 3.69
25 26 4.899239 CGCAGATCACCGGCCTCC 62.899 72.222 0.00 0.00 32.06 4.30
58 59 0.682209 ATGGAAGGCACAGGTCATGC 60.682 55.000 0.00 0.00 42.62 4.06
59 60 2.569059 CTATGGAAGGCACAGGTCATG 58.431 52.381 0.00 0.00 0.00 3.07
60 61 1.492176 CCTATGGAAGGCACAGGTCAT 59.508 52.381 0.00 0.00 38.97 3.06
61 62 0.911769 CCTATGGAAGGCACAGGTCA 59.088 55.000 0.00 0.00 38.97 4.02
62 63 1.204146 TCCTATGGAAGGCACAGGTC 58.796 55.000 0.00 0.00 46.10 3.85
63 64 1.492176 CATCCTATGGAAGGCACAGGT 59.508 52.381 0.00 0.00 46.10 4.00
64 65 1.770658 TCATCCTATGGAAGGCACAGG 59.229 52.381 0.00 0.00 46.10 4.00
65 66 3.565764 TTCATCCTATGGAAGGCACAG 57.434 47.619 0.00 0.00 46.10 3.66
66 67 4.524802 ATTTCATCCTATGGAAGGCACA 57.475 40.909 0.00 0.00 46.10 4.57
67 68 4.038402 CCAATTTCATCCTATGGAAGGCAC 59.962 45.833 0.00 0.00 46.10 5.01
68 69 4.217510 CCAATTTCATCCTATGGAAGGCA 58.782 43.478 0.00 0.00 46.10 4.75
69 70 4.218312 ACCAATTTCATCCTATGGAAGGC 58.782 43.478 0.00 0.00 46.10 4.35
71 72 6.040166 CCAAGACCAATTTCATCCTATGGAAG 59.960 42.308 0.00 0.00 34.34 3.46
72 73 5.893255 CCAAGACCAATTTCATCCTATGGAA 59.107 40.000 0.00 0.00 34.34 3.53
73 74 5.044179 ACCAAGACCAATTTCATCCTATGGA 60.044 40.000 0.00 0.00 35.16 3.41
74 75 5.068198 CACCAAGACCAATTTCATCCTATGG 59.932 44.000 0.00 0.00 37.19 2.74
75 76 5.887598 TCACCAAGACCAATTTCATCCTATG 59.112 40.000 0.00 0.00 0.00 2.23
76 77 6.078456 TCACCAAGACCAATTTCATCCTAT 57.922 37.500 0.00 0.00 0.00 2.57
77 78 5.500234 CTCACCAAGACCAATTTCATCCTA 58.500 41.667 0.00 0.00 0.00 2.94
78 79 4.338879 CTCACCAAGACCAATTTCATCCT 58.661 43.478 0.00 0.00 0.00 3.24
79 80 3.119352 GCTCACCAAGACCAATTTCATCC 60.119 47.826 0.00 0.00 0.00 3.51
80 81 3.760684 AGCTCACCAAGACCAATTTCATC 59.239 43.478 0.00 0.00 0.00 2.92
81 82 3.771216 AGCTCACCAAGACCAATTTCAT 58.229 40.909 0.00 0.00 0.00 2.57
82 83 3.228188 AGCTCACCAAGACCAATTTCA 57.772 42.857 0.00 0.00 0.00 2.69
83 84 3.823304 AGAAGCTCACCAAGACCAATTTC 59.177 43.478 0.00 0.00 0.00 2.17
84 85 3.823304 GAGAAGCTCACCAAGACCAATTT 59.177 43.478 0.00 0.00 0.00 1.82
85 86 3.073650 AGAGAAGCTCACCAAGACCAATT 59.926 43.478 0.00 0.00 32.06 2.32
86 87 2.641815 AGAGAAGCTCACCAAGACCAAT 59.358 45.455 0.00 0.00 32.06 3.16
87 88 2.050144 AGAGAAGCTCACCAAGACCAA 58.950 47.619 0.00 0.00 32.06 3.67
88 89 1.345741 CAGAGAAGCTCACCAAGACCA 59.654 52.381 0.00 0.00 32.06 4.02
89 90 1.620819 TCAGAGAAGCTCACCAAGACC 59.379 52.381 0.00 0.00 32.06 3.85
90 91 3.260740 CATCAGAGAAGCTCACCAAGAC 58.739 50.000 0.00 0.00 32.06 3.01
91 92 2.235650 CCATCAGAGAAGCTCACCAAGA 59.764 50.000 0.00 0.00 32.06 3.02
92 93 2.630158 CCATCAGAGAAGCTCACCAAG 58.370 52.381 0.00 0.00 32.06 3.61
93 94 1.280133 CCCATCAGAGAAGCTCACCAA 59.720 52.381 0.00 0.00 32.06 3.67
94 95 0.907486 CCCATCAGAGAAGCTCACCA 59.093 55.000 0.00 0.00 32.06 4.17
95 96 1.138661 CTCCCATCAGAGAAGCTCACC 59.861 57.143 0.00 0.00 35.82 4.02
96 97 2.101249 CTCTCCCATCAGAGAAGCTCAC 59.899 54.545 0.00 0.00 42.44 3.51
97 98 2.386779 CTCTCCCATCAGAGAAGCTCA 58.613 52.381 0.00 0.00 42.44 4.26
98 99 1.069049 GCTCTCCCATCAGAGAAGCTC 59.931 57.143 1.53 0.00 42.44 4.09
99 100 1.122227 GCTCTCCCATCAGAGAAGCT 58.878 55.000 1.53 0.00 42.44 3.74
100 101 0.249405 CGCTCTCCCATCAGAGAAGC 60.249 60.000 1.53 0.00 42.44 3.86
101 102 0.249405 GCGCTCTCCCATCAGAGAAG 60.249 60.000 0.00 0.00 42.44 2.85
102 103 1.680522 GGCGCTCTCCCATCAGAGAA 61.681 60.000 7.64 0.00 42.44 2.87
103 104 2.130426 GGCGCTCTCCCATCAGAGA 61.130 63.158 7.64 0.00 42.44 3.10
104 105 1.964608 TTGGCGCTCTCCCATCAGAG 61.965 60.000 7.64 0.00 42.68 3.35
105 106 1.964608 CTTGGCGCTCTCCCATCAGA 61.965 60.000 7.64 0.00 31.26 3.27
106 107 1.523258 CTTGGCGCTCTCCCATCAG 60.523 63.158 7.64 0.00 31.26 2.90
107 108 2.586245 CTTGGCGCTCTCCCATCA 59.414 61.111 7.64 0.00 31.26 3.07
108 109 2.203126 CCTTGGCGCTCTCCCATC 60.203 66.667 7.64 0.00 31.26 3.51
109 110 2.606587 AACCTTGGCGCTCTCCCAT 61.607 57.895 7.64 0.00 31.26 4.00
110 111 3.249189 AACCTTGGCGCTCTCCCA 61.249 61.111 7.64 0.00 0.00 4.37
111 112 2.747855 CAACCTTGGCGCTCTCCC 60.748 66.667 7.64 0.00 0.00 4.30
112 113 1.743252 CTCAACCTTGGCGCTCTCC 60.743 63.158 7.64 0.00 0.00 3.71
113 114 1.743252 CCTCAACCTTGGCGCTCTC 60.743 63.158 7.64 0.00 0.00 3.20
114 115 2.348998 CCTCAACCTTGGCGCTCT 59.651 61.111 7.64 0.00 0.00 4.09
115 116 2.747855 CCCTCAACCTTGGCGCTC 60.748 66.667 7.64 0.00 0.00 5.03
116 117 3.249189 TCCCTCAACCTTGGCGCT 61.249 61.111 7.64 0.00 0.00 5.92
117 118 2.747855 CTCCCTCAACCTTGGCGC 60.748 66.667 0.00 0.00 0.00 6.53
118 119 1.376037 GTCTCCCTCAACCTTGGCG 60.376 63.158 0.00 0.00 0.00 5.69
119 120 1.376037 CGTCTCCCTCAACCTTGGC 60.376 63.158 0.00 0.00 0.00 4.52
120 121 1.296715 CCGTCTCCCTCAACCTTGG 59.703 63.158 0.00 0.00 0.00 3.61
121 122 0.396811 AACCGTCTCCCTCAACCTTG 59.603 55.000 0.00 0.00 0.00 3.61
122 123 0.396811 CAACCGTCTCCCTCAACCTT 59.603 55.000 0.00 0.00 0.00 3.50
123 124 0.471211 TCAACCGTCTCCCTCAACCT 60.471 55.000 0.00 0.00 0.00 3.50
124 125 0.613777 ATCAACCGTCTCCCTCAACC 59.386 55.000 0.00 0.00 0.00 3.77
125 126 1.275291 TCATCAACCGTCTCCCTCAAC 59.725 52.381 0.00 0.00 0.00 3.18
126 127 1.275291 GTCATCAACCGTCTCCCTCAA 59.725 52.381 0.00 0.00 0.00 3.02
127 128 0.895530 GTCATCAACCGTCTCCCTCA 59.104 55.000 0.00 0.00 0.00 3.86
128 129 0.179134 CGTCATCAACCGTCTCCCTC 60.179 60.000 0.00 0.00 0.00 4.30
129 130 0.611062 TCGTCATCAACCGTCTCCCT 60.611 55.000 0.00 0.00 0.00 4.20
130 131 0.458025 GTCGTCATCAACCGTCTCCC 60.458 60.000 0.00 0.00 0.00 4.30
131 132 0.797249 CGTCGTCATCAACCGTCTCC 60.797 60.000 0.00 0.00 0.00 3.71
132 133 0.167470 TCGTCGTCATCAACCGTCTC 59.833 55.000 0.00 0.00 0.00 3.36
133 134 0.109873 GTCGTCGTCATCAACCGTCT 60.110 55.000 0.00 0.00 0.00 4.18
134 135 0.386352 TGTCGTCGTCATCAACCGTC 60.386 55.000 0.00 0.00 0.00 4.79
135 136 0.242825 ATGTCGTCGTCATCAACCGT 59.757 50.000 0.00 0.00 0.00 4.83
136 137 0.640262 CATGTCGTCGTCATCAACCG 59.360 55.000 1.83 0.00 0.00 4.44
137 138 0.999406 CCATGTCGTCGTCATCAACC 59.001 55.000 1.83 0.00 0.00 3.77
138 139 0.370273 GCCATGTCGTCGTCATCAAC 59.630 55.000 1.83 0.00 0.00 3.18
139 140 1.075979 CGCCATGTCGTCGTCATCAA 61.076 55.000 1.83 0.00 0.00 2.57
140 141 1.516169 CGCCATGTCGTCGTCATCA 60.516 57.895 1.83 0.00 0.00 3.07
141 142 1.202973 CTCGCCATGTCGTCGTCATC 61.203 60.000 1.83 0.00 0.00 2.92
142 143 1.226688 CTCGCCATGTCGTCGTCAT 60.227 57.895 0.00 0.00 0.00 3.06
143 144 2.178273 CTCGCCATGTCGTCGTCA 59.822 61.111 0.00 0.00 0.00 4.35
144 145 2.579787 CCTCGCCATGTCGTCGTC 60.580 66.667 0.00 0.00 0.00 4.20
145 146 4.129737 CCCTCGCCATGTCGTCGT 62.130 66.667 0.00 0.00 0.00 4.34
146 147 4.129737 ACCCTCGCCATGTCGTCG 62.130 66.667 0.00 0.00 0.00 5.12
147 148 2.509336 CACCCTCGCCATGTCGTC 60.509 66.667 0.00 0.00 0.00 4.20
148 149 2.994995 TCACCCTCGCCATGTCGT 60.995 61.111 0.00 0.00 0.00 4.34
149 150 2.202797 CTCACCCTCGCCATGTCG 60.203 66.667 0.00 0.00 0.00 4.35
150 151 2.512515 GCTCACCCTCGCCATGTC 60.513 66.667 0.00 0.00 0.00 3.06
151 152 4.457496 CGCTCACCCTCGCCATGT 62.457 66.667 0.00 0.00 0.00 3.21
152 153 4.147449 TCGCTCACCCTCGCCATG 62.147 66.667 0.00 0.00 0.00 3.66
153 154 3.842923 CTCGCTCACCCTCGCCAT 61.843 66.667 0.00 0.00 0.00 4.40
156 157 3.708220 CTTCCTCGCTCACCCTCGC 62.708 68.421 0.00 0.00 0.00 5.03
157 158 2.492090 CTTCCTCGCTCACCCTCG 59.508 66.667 0.00 0.00 0.00 4.63
158 159 1.045911 ATCCTTCCTCGCTCACCCTC 61.046 60.000 0.00 0.00 0.00 4.30
159 160 1.002274 ATCCTTCCTCGCTCACCCT 59.998 57.895 0.00 0.00 0.00 4.34
160 161 1.144936 CATCCTTCCTCGCTCACCC 59.855 63.158 0.00 0.00 0.00 4.61
161 162 1.144936 CCATCCTTCCTCGCTCACC 59.855 63.158 0.00 0.00 0.00 4.02
162 163 1.522580 GCCATCCTTCCTCGCTCAC 60.523 63.158 0.00 0.00 0.00 3.51
163 164 2.903357 GCCATCCTTCCTCGCTCA 59.097 61.111 0.00 0.00 0.00 4.26
164 165 2.279784 CGCCATCCTTCCTCGCTC 60.280 66.667 0.00 0.00 0.00 5.03
165 166 2.759973 TCGCCATCCTTCCTCGCT 60.760 61.111 0.00 0.00 0.00 4.93
166 167 2.279784 CTCGCCATCCTTCCTCGC 60.280 66.667 0.00 0.00 0.00 5.03
167 168 2.419198 CCTCGCCATCCTTCCTCG 59.581 66.667 0.00 0.00 0.00 4.63
168 169 2.825264 CCCTCGCCATCCTTCCTC 59.175 66.667 0.00 0.00 0.00 3.71
169 170 3.483869 GCCCTCGCCATCCTTCCT 61.484 66.667 0.00 0.00 0.00 3.36
170 171 4.918201 CGCCCTCGCCATCCTTCC 62.918 72.222 0.00 0.00 0.00 3.46
171 172 3.170490 ATCGCCCTCGCCATCCTTC 62.170 63.158 0.00 0.00 35.26 3.46
172 173 3.164269 ATCGCCCTCGCCATCCTT 61.164 61.111 0.00 0.00 35.26 3.36
173 174 3.620785 GATCGCCCTCGCCATCCT 61.621 66.667 0.00 0.00 35.26 3.24
175 176 3.905705 CTCGATCGCCCTCGCCATC 62.906 68.421 11.09 0.00 38.52 3.51
176 177 3.983494 CTCGATCGCCCTCGCCAT 61.983 66.667 11.09 0.00 38.52 4.40
179 180 3.832720 CTTCCTCGATCGCCCTCGC 62.833 68.421 11.09 0.00 38.52 5.03
180 181 2.333225 CTTCCTCGATCGCCCTCG 59.667 66.667 11.09 0.00 39.99 4.63
181 182 1.801309 CTCCTTCCTCGATCGCCCTC 61.801 65.000 11.09 0.00 0.00 4.30
182 183 1.830408 CTCCTTCCTCGATCGCCCT 60.830 63.158 11.09 0.00 0.00 5.19
183 184 2.731374 CTCCTTCCTCGATCGCCC 59.269 66.667 11.09 0.00 0.00 6.13
184 185 0.822532 TACCTCCTTCCTCGATCGCC 60.823 60.000 11.09 0.00 0.00 5.54
185 186 0.594110 CTACCTCCTTCCTCGATCGC 59.406 60.000 11.09 0.00 0.00 4.58
186 187 0.594110 GCTACCTCCTTCCTCGATCG 59.406 60.000 9.36 9.36 0.00 3.69
187 188 1.611491 CAGCTACCTCCTTCCTCGATC 59.389 57.143 0.00 0.00 0.00 3.69
188 189 1.698506 CAGCTACCTCCTTCCTCGAT 58.301 55.000 0.00 0.00 0.00 3.59
189 190 0.395862 CCAGCTACCTCCTTCCTCGA 60.396 60.000 0.00 0.00 0.00 4.04
190 191 2.022240 GCCAGCTACCTCCTTCCTCG 62.022 65.000 0.00 0.00 0.00 4.63
191 192 0.689412 AGCCAGCTACCTCCTTCCTC 60.689 60.000 0.00 0.00 0.00 3.71
192 193 0.637195 TAGCCAGCTACCTCCTTCCT 59.363 55.000 0.00 0.00 0.00 3.36
193 194 1.044611 CTAGCCAGCTACCTCCTTCC 58.955 60.000 0.00 0.00 0.00 3.46
194 195 2.074729 TCTAGCCAGCTACCTCCTTC 57.925 55.000 0.00 0.00 0.00 3.46
195 196 2.604139 GATCTAGCCAGCTACCTCCTT 58.396 52.381 0.00 0.00 0.00 3.36
196 197 1.546773 CGATCTAGCCAGCTACCTCCT 60.547 57.143 0.00 0.00 0.00 3.69
197 198 0.885196 CGATCTAGCCAGCTACCTCC 59.115 60.000 0.00 0.00 0.00 4.30
198 199 1.898902 TCGATCTAGCCAGCTACCTC 58.101 55.000 0.00 0.00 0.00 3.85
199 200 2.595750 ATCGATCTAGCCAGCTACCT 57.404 50.000 0.00 0.00 0.00 3.08
200 201 2.685897 CCTATCGATCTAGCCAGCTACC 59.314 54.545 0.00 0.00 0.00 3.18
201 202 3.611970 TCCTATCGATCTAGCCAGCTAC 58.388 50.000 0.00 0.00 0.00 3.58
202 203 4.019231 TCTTCCTATCGATCTAGCCAGCTA 60.019 45.833 0.00 0.00 0.00 3.32
203 204 2.889170 TCCTATCGATCTAGCCAGCT 57.111 50.000 0.00 0.00 0.00 4.24
204 205 3.085533 TCTTCCTATCGATCTAGCCAGC 58.914 50.000 0.00 0.00 0.00 4.85
205 206 3.694072 CCTCTTCCTATCGATCTAGCCAG 59.306 52.174 0.00 0.00 0.00 4.85
206 207 3.330998 TCCTCTTCCTATCGATCTAGCCA 59.669 47.826 0.00 0.00 0.00 4.75
207 208 3.958018 TCCTCTTCCTATCGATCTAGCC 58.042 50.000 0.00 0.00 0.00 3.93
208 209 4.338118 CCATCCTCTTCCTATCGATCTAGC 59.662 50.000 0.00 0.00 0.00 3.42
209 210 4.338118 GCCATCCTCTTCCTATCGATCTAG 59.662 50.000 0.00 0.00 0.00 2.43
210 211 4.017958 AGCCATCCTCTTCCTATCGATCTA 60.018 45.833 0.00 0.00 0.00 1.98
211 212 3.096092 GCCATCCTCTTCCTATCGATCT 58.904 50.000 0.00 0.00 0.00 2.75
212 213 3.096092 AGCCATCCTCTTCCTATCGATC 58.904 50.000 0.00 0.00 0.00 3.69
213 214 3.096092 GAGCCATCCTCTTCCTATCGAT 58.904 50.000 2.16 2.16 37.60 3.59
214 215 2.520069 GAGCCATCCTCTTCCTATCGA 58.480 52.381 0.00 0.00 37.60 3.59
224 225 3.580458 ACATGGTATACAGAGCCATCCTC 59.420 47.826 5.01 0.00 40.68 3.71
225 226 3.591789 ACATGGTATACAGAGCCATCCT 58.408 45.455 5.01 0.00 40.68 3.24
226 227 4.357918 AACATGGTATACAGAGCCATCC 57.642 45.455 5.01 0.00 40.68 3.51
227 228 6.346477 TCTAACATGGTATACAGAGCCATC 57.654 41.667 5.01 0.00 40.68 3.51
228 229 6.296087 CCATCTAACATGGTATACAGAGCCAT 60.296 42.308 5.01 0.00 43.14 4.40
229 230 5.012046 CCATCTAACATGGTATACAGAGCCA 59.988 44.000 5.01 0.00 34.56 4.75
230 231 5.482908 CCATCTAACATGGTATACAGAGCC 58.517 45.833 5.01 0.00 34.56 4.70
231 232 5.246203 TCCCATCTAACATGGTATACAGAGC 59.754 44.000 5.01 0.00 37.48 4.09
232 233 6.918067 TCCCATCTAACATGGTATACAGAG 57.082 41.667 5.01 0.00 37.48 3.35
233 234 6.239600 GCTTCCCATCTAACATGGTATACAGA 60.240 42.308 5.01 0.00 37.48 3.41
234 235 5.934625 GCTTCCCATCTAACATGGTATACAG 59.065 44.000 5.01 0.00 37.48 2.74
235 236 5.368230 TGCTTCCCATCTAACATGGTATACA 59.632 40.000 5.01 0.00 37.48 2.29
236 237 5.865085 TGCTTCCCATCTAACATGGTATAC 58.135 41.667 0.00 0.00 37.48 1.47
237 238 6.702449 ATGCTTCCCATCTAACATGGTATA 57.298 37.500 0.00 0.00 37.48 1.47
238 239 5.589367 ATGCTTCCCATCTAACATGGTAT 57.411 39.130 0.00 0.00 37.48 2.73
239 240 5.376625 GAATGCTTCCCATCTAACATGGTA 58.623 41.667 0.00 0.00 37.48 3.25
240 241 3.959495 ATGCTTCCCATCTAACATGGT 57.041 42.857 0.00 0.00 37.48 3.55
241 242 3.571401 GGAATGCTTCCCATCTAACATGG 59.429 47.826 0.00 0.00 44.30 3.66
242 243 4.843220 GGAATGCTTCCCATCTAACATG 57.157 45.455 0.00 0.00 44.30 3.21
254 255 3.389329 TCATGAGGGAGTAGGAATGCTTC 59.611 47.826 0.00 0.00 0.00 3.86
255 256 3.387962 TCATGAGGGAGTAGGAATGCTT 58.612 45.455 0.00 0.00 0.00 3.91
256 257 2.971330 CTCATGAGGGAGTAGGAATGCT 59.029 50.000 15.38 0.00 0.00 3.79
257 258 2.038295 CCTCATGAGGGAGTAGGAATGC 59.962 54.545 31.14 0.00 44.87 3.56
270 271 3.842923 ACGCGGCTCCCTCATGAG 61.843 66.667 16.24 16.24 35.40 2.90
271 272 4.147449 CACGCGGCTCCCTCATGA 62.147 66.667 12.47 0.00 0.00 3.07
277 278 2.203972 TATATACGCACGCGGCTCCC 62.204 60.000 16.70 0.00 44.69 4.30
278 279 0.179145 ATATATACGCACGCGGCTCC 60.179 55.000 16.70 0.00 44.69 4.70
279 280 1.320555 CAATATATACGCACGCGGCTC 59.679 52.381 16.70 0.00 44.69 4.70
280 281 1.068125 TCAATATATACGCACGCGGCT 60.068 47.619 16.70 4.86 44.69 5.52
281 282 1.342555 TCAATATATACGCACGCGGC 58.657 50.000 16.70 10.52 44.69 6.53
282 283 3.240631 CAGATCAATATATACGCACGCGG 59.759 47.826 16.70 0.00 44.69 6.46
283 284 4.095610 TCAGATCAATATATACGCACGCG 58.904 43.478 10.36 10.36 46.03 6.01
284 285 4.500837 CCTCAGATCAATATATACGCACGC 59.499 45.833 0.00 0.00 0.00 5.34
285 286 4.500837 GCCTCAGATCAATATATACGCACG 59.499 45.833 0.00 0.00 0.00 5.34
286 287 5.410924 TGCCTCAGATCAATATATACGCAC 58.589 41.667 0.00 0.00 0.00 5.34
287 288 5.394553 CCTGCCTCAGATCAATATATACGCA 60.395 44.000 0.00 0.00 32.44 5.24
288 289 5.046529 CCTGCCTCAGATCAATATATACGC 58.953 45.833 0.00 0.00 32.44 4.42
289 290 6.456795 TCCTGCCTCAGATCAATATATACG 57.543 41.667 0.00 0.00 32.44 3.06
290 291 7.768120 CCTTTCCTGCCTCAGATCAATATATAC 59.232 40.741 0.00 0.00 32.44 1.47
291 292 7.582242 GCCTTTCCTGCCTCAGATCAATATATA 60.582 40.741 0.00 0.00 32.44 0.86
292 293 6.719301 CCTTTCCTGCCTCAGATCAATATAT 58.281 40.000 0.00 0.00 32.44 0.86
293 294 5.513788 GCCTTTCCTGCCTCAGATCAATATA 60.514 44.000 0.00 0.00 32.44 0.86
294 295 4.749166 GCCTTTCCTGCCTCAGATCAATAT 60.749 45.833 0.00 0.00 32.44 1.28
295 296 3.434167 GCCTTTCCTGCCTCAGATCAATA 60.434 47.826 0.00 0.00 32.44 1.90
296 297 2.686118 GCCTTTCCTGCCTCAGATCAAT 60.686 50.000 0.00 0.00 32.44 2.57
297 298 1.340405 GCCTTTCCTGCCTCAGATCAA 60.340 52.381 0.00 0.00 32.44 2.57
298 299 0.254178 GCCTTTCCTGCCTCAGATCA 59.746 55.000 0.00 0.00 32.44 2.92
299 300 0.465278 GGCCTTTCCTGCCTCAGATC 60.465 60.000 0.00 0.00 45.70 2.75
300 301 1.611965 GGCCTTTCCTGCCTCAGAT 59.388 57.895 0.00 0.00 45.70 2.90
301 302 3.081554 GGCCTTTCCTGCCTCAGA 58.918 61.111 0.00 0.00 45.70 3.27
317 318 3.561120 TTGTAAGCCACGGCAGGGG 62.561 63.158 11.35 0.00 46.15 4.79
318 319 2.033448 TTGTAAGCCACGGCAGGG 59.967 61.111 11.35 0.00 44.88 4.45
319 320 2.040544 CCTTGTAAGCCACGGCAGG 61.041 63.158 11.35 3.85 44.88 4.85
320 321 1.003839 TCCTTGTAAGCCACGGCAG 60.004 57.895 11.35 0.00 44.88 4.85
321 322 1.003839 CTCCTTGTAAGCCACGGCA 60.004 57.895 11.35 0.00 44.88 5.69
322 323 0.605589 AACTCCTTGTAAGCCACGGC 60.606 55.000 0.00 0.00 42.33 5.68
323 324 1.892209 AAACTCCTTGTAAGCCACGG 58.108 50.000 0.00 0.00 33.78 4.94
324 325 2.740447 GGTAAACTCCTTGTAAGCCACG 59.260 50.000 0.00 0.00 0.00 4.94
325 326 2.740447 CGGTAAACTCCTTGTAAGCCAC 59.260 50.000 0.00 0.00 0.00 5.01
326 327 2.633967 TCGGTAAACTCCTTGTAAGCCA 59.366 45.455 0.00 0.00 0.00 4.75
327 328 3.323751 TCGGTAAACTCCTTGTAAGCC 57.676 47.619 0.00 0.00 0.00 4.35
328 329 4.756502 AGATCGGTAAACTCCTTGTAAGC 58.243 43.478 0.00 0.00 0.00 3.09
329 330 6.210287 AGAGATCGGTAAACTCCTTGTAAG 57.790 41.667 0.00 0.00 0.00 2.34
330 331 6.395629 CAAGAGATCGGTAAACTCCTTGTAA 58.604 40.000 0.00 0.00 0.00 2.41
331 332 5.105473 CCAAGAGATCGGTAAACTCCTTGTA 60.105 44.000 0.00 0.00 0.00 2.41
332 333 4.322801 CCAAGAGATCGGTAAACTCCTTGT 60.323 45.833 0.00 0.00 0.00 3.16
333 334 4.184629 CCAAGAGATCGGTAAACTCCTTG 58.815 47.826 0.00 0.00 0.00 3.61
334 335 3.197983 CCCAAGAGATCGGTAAACTCCTT 59.802 47.826 0.00 0.00 0.00 3.36
335 336 2.766828 CCCAAGAGATCGGTAAACTCCT 59.233 50.000 0.00 0.00 0.00 3.69
336 337 2.158943 CCCCAAGAGATCGGTAAACTCC 60.159 54.545 0.00 0.00 0.00 3.85
337 338 2.764572 TCCCCAAGAGATCGGTAAACTC 59.235 50.000 0.00 0.00 0.00 3.01
338 339 2.829023 TCCCCAAGAGATCGGTAAACT 58.171 47.619 0.00 0.00 0.00 2.66
339 340 3.840124 ATCCCCAAGAGATCGGTAAAC 57.160 47.619 0.00 0.00 0.00 2.01
340 341 3.181469 CGAATCCCCAAGAGATCGGTAAA 60.181 47.826 0.00 0.00 35.32 2.01
341 342 2.364324 CGAATCCCCAAGAGATCGGTAA 59.636 50.000 0.00 0.00 35.32 2.85
342 343 1.961394 CGAATCCCCAAGAGATCGGTA 59.039 52.381 0.00 0.00 35.32 4.02
343 344 0.753262 CGAATCCCCAAGAGATCGGT 59.247 55.000 0.00 0.00 35.32 4.69
344 345 0.034059 CCGAATCCCCAAGAGATCGG 59.966 60.000 0.00 0.00 45.75 4.18
345 346 0.753262 ACCGAATCCCCAAGAGATCG 59.247 55.000 0.00 0.00 37.46 3.69
346 347 2.945668 CAAACCGAATCCCCAAGAGATC 59.054 50.000 0.00 0.00 0.00 2.75
347 348 2.308866 ACAAACCGAATCCCCAAGAGAT 59.691 45.455 0.00 0.00 0.00 2.75
348 349 1.702957 ACAAACCGAATCCCCAAGAGA 59.297 47.619 0.00 0.00 0.00 3.10
349 350 2.200373 ACAAACCGAATCCCCAAGAG 57.800 50.000 0.00 0.00 0.00 2.85
350 351 2.668144 AACAAACCGAATCCCCAAGA 57.332 45.000 0.00 0.00 0.00 3.02
351 352 3.150767 TGTAACAAACCGAATCCCCAAG 58.849 45.455 0.00 0.00 0.00 3.61
352 353 3.225177 TGTAACAAACCGAATCCCCAA 57.775 42.857 0.00 0.00 0.00 4.12
353 354 2.953284 TGTAACAAACCGAATCCCCA 57.047 45.000 0.00 0.00 0.00 4.96
354 355 3.057104 CCTTTGTAACAAACCGAATCCCC 60.057 47.826 0.00 0.00 0.00 4.81
355 356 3.822167 TCCTTTGTAACAAACCGAATCCC 59.178 43.478 0.00 0.00 0.00 3.85
356 357 4.758165 TCTCCTTTGTAACAAACCGAATCC 59.242 41.667 0.00 0.00 0.00 3.01
357 358 5.934935 TCTCCTTTGTAACAAACCGAATC 57.065 39.130 0.00 0.00 0.00 2.52
358 359 6.598064 CCTATCTCCTTTGTAACAAACCGAAT 59.402 38.462 0.00 0.00 0.00 3.34
359 360 5.935789 CCTATCTCCTTTGTAACAAACCGAA 59.064 40.000 0.00 0.00 0.00 4.30
360 361 5.246656 TCCTATCTCCTTTGTAACAAACCGA 59.753 40.000 0.00 0.00 0.00 4.69
361 362 5.484715 TCCTATCTCCTTTGTAACAAACCG 58.515 41.667 0.00 0.00 0.00 4.44
362 363 6.708285 TCTCCTATCTCCTTTGTAACAAACC 58.292 40.000 0.00 0.00 0.00 3.27
363 364 7.148390 GCTTCTCCTATCTCCTTTGTAACAAAC 60.148 40.741 0.00 0.00 0.00 2.93
364 365 6.879458 GCTTCTCCTATCTCCTTTGTAACAAA 59.121 38.462 0.00 0.00 0.00 2.83
365 366 6.213600 AGCTTCTCCTATCTCCTTTGTAACAA 59.786 38.462 0.00 0.00 0.00 2.83
366 367 5.721960 AGCTTCTCCTATCTCCTTTGTAACA 59.278 40.000 0.00 0.00 0.00 2.41
367 368 6.228616 AGCTTCTCCTATCTCCTTTGTAAC 57.771 41.667 0.00 0.00 0.00 2.50
368 369 6.039493 CGTAGCTTCTCCTATCTCCTTTGTAA 59.961 42.308 0.00 0.00 0.00 2.41
369 370 5.531659 CGTAGCTTCTCCTATCTCCTTTGTA 59.468 44.000 0.00 0.00 0.00 2.41
370 371 4.339814 CGTAGCTTCTCCTATCTCCTTTGT 59.660 45.833 0.00 0.00 0.00 2.83
371 372 4.261825 CCGTAGCTTCTCCTATCTCCTTTG 60.262 50.000 0.00 0.00 0.00 2.77
372 373 3.892588 CCGTAGCTTCTCCTATCTCCTTT 59.107 47.826 0.00 0.00 0.00 3.11
373 374 3.492337 CCGTAGCTTCTCCTATCTCCTT 58.508 50.000 0.00 0.00 0.00 3.36
374 375 2.224917 CCCGTAGCTTCTCCTATCTCCT 60.225 54.545 0.00 0.00 0.00 3.69
375 376 2.164338 CCCGTAGCTTCTCCTATCTCC 58.836 57.143 0.00 0.00 0.00 3.71
376 377 3.078837 CTCCCGTAGCTTCTCCTATCTC 58.921 54.545 0.00 0.00 0.00 2.75
377 378 2.712087 TCTCCCGTAGCTTCTCCTATCT 59.288 50.000 0.00 0.00 0.00 1.98
378 379 3.078837 CTCTCCCGTAGCTTCTCCTATC 58.921 54.545 0.00 0.00 0.00 2.08
379 380 2.224917 CCTCTCCCGTAGCTTCTCCTAT 60.225 54.545 0.00 0.00 0.00 2.57
380 381 1.143277 CCTCTCCCGTAGCTTCTCCTA 59.857 57.143 0.00 0.00 0.00 2.94
381 382 0.106419 CCTCTCCCGTAGCTTCTCCT 60.106 60.000 0.00 0.00 0.00 3.69
382 383 0.106619 TCCTCTCCCGTAGCTTCTCC 60.107 60.000 0.00 0.00 0.00 3.71
383 384 1.679153 CTTCCTCTCCCGTAGCTTCTC 59.321 57.143 0.00 0.00 0.00 2.87
384 385 1.285373 TCTTCCTCTCCCGTAGCTTCT 59.715 52.381 0.00 0.00 0.00 2.85
385 386 1.765230 TCTTCCTCTCCCGTAGCTTC 58.235 55.000 0.00 0.00 0.00 3.86
386 387 2.035632 CATCTTCCTCTCCCGTAGCTT 58.964 52.381 0.00 0.00 0.00 3.74
387 388 1.063567 ACATCTTCCTCTCCCGTAGCT 60.064 52.381 0.00 0.00 0.00 3.32
388 389 1.404843 ACATCTTCCTCTCCCGTAGC 58.595 55.000 0.00 0.00 0.00 3.58
389 390 4.088056 TCTACATCTTCCTCTCCCGTAG 57.912 50.000 0.00 0.00 0.00 3.51
390 391 4.515028 TTCTACATCTTCCTCTCCCGTA 57.485 45.455 0.00 0.00 0.00 4.02
391 392 3.383698 TTCTACATCTTCCTCTCCCGT 57.616 47.619 0.00 0.00 0.00 5.28
392 393 3.891977 TGATTCTACATCTTCCTCTCCCG 59.108 47.826 0.00 0.00 0.00 5.14
393 394 4.898861 ACTGATTCTACATCTTCCTCTCCC 59.101 45.833 0.00 0.00 0.00 4.30
394 395 6.478512 AACTGATTCTACATCTTCCTCTCC 57.521 41.667 0.00 0.00 0.00 3.71
395 396 9.528018 CTAAAACTGATTCTACATCTTCCTCTC 57.472 37.037 0.00 0.00 0.00 3.20
396 397 9.261035 TCTAAAACTGATTCTACATCTTCCTCT 57.739 33.333 0.00 0.00 0.00 3.69
433 434 8.986991 AGGAAACAGTGTCAGAATTAGAGATAT 58.013 33.333 0.00 0.00 0.00 1.63
434 435 8.367660 AGGAAACAGTGTCAGAATTAGAGATA 57.632 34.615 0.00 0.00 0.00 1.98
435 436 7.251321 AGGAAACAGTGTCAGAATTAGAGAT 57.749 36.000 0.00 0.00 0.00 2.75
436 437 6.672266 AGGAAACAGTGTCAGAATTAGAGA 57.328 37.500 0.00 0.00 0.00 3.10
437 438 8.877779 CATAAGGAAACAGTGTCAGAATTAGAG 58.122 37.037 0.00 0.00 0.00 2.43
438 439 8.593679 TCATAAGGAAACAGTGTCAGAATTAGA 58.406 33.333 0.00 0.00 0.00 2.10
439 440 8.660373 GTCATAAGGAAACAGTGTCAGAATTAG 58.340 37.037 0.00 0.00 0.00 1.73
440 441 7.330946 CGTCATAAGGAAACAGTGTCAGAATTA 59.669 37.037 0.00 0.00 0.00 1.40
441 442 6.147821 CGTCATAAGGAAACAGTGTCAGAATT 59.852 38.462 0.00 0.00 0.00 2.17
442 443 5.639506 CGTCATAAGGAAACAGTGTCAGAAT 59.360 40.000 0.00 0.00 0.00 2.40
443 444 4.988540 CGTCATAAGGAAACAGTGTCAGAA 59.011 41.667 0.00 0.00 0.00 3.02
444 445 4.556233 CGTCATAAGGAAACAGTGTCAGA 58.444 43.478 0.00 0.00 0.00 3.27
445 446 3.679980 CCGTCATAAGGAAACAGTGTCAG 59.320 47.826 0.00 0.00 0.00 3.51
446 447 3.322541 TCCGTCATAAGGAAACAGTGTCA 59.677 43.478 0.00 0.00 34.33 3.58
447 448 3.678548 GTCCGTCATAAGGAAACAGTGTC 59.321 47.826 0.00 0.00 39.84 3.67
448 449 3.660865 GTCCGTCATAAGGAAACAGTGT 58.339 45.455 0.00 0.00 39.84 3.55
449 450 2.666508 CGTCCGTCATAAGGAAACAGTG 59.333 50.000 0.00 0.00 39.84 3.66
450 451 2.298163 ACGTCCGTCATAAGGAAACAGT 59.702 45.455 0.00 0.00 39.84 3.55
451 452 2.921754 GACGTCCGTCATAAGGAAACAG 59.078 50.000 14.48 0.00 44.02 3.16
452 453 2.669113 CGACGTCCGTCATAAGGAAACA 60.669 50.000 18.69 0.00 44.77 2.83
477 478 7.253783 CGAGTGTCTGCAAACATAAGTATGTAG 60.254 40.741 0.00 2.72 45.55 2.74
751 752 2.109126 GCCGCACTTGATGTCCCTC 61.109 63.158 0.00 0.00 0.00 4.30
797 798 8.978874 AATAATGTATGATGAACTGGCAACTA 57.021 30.769 0.00 0.00 37.61 2.24
835 836 6.949352 ACCAATGCTATCTATCAAAAGGTG 57.051 37.500 0.00 0.00 0.00 4.00
836 837 7.961326 AAACCAATGCTATCTATCAAAAGGT 57.039 32.000 0.00 0.00 0.00 3.50
837 838 9.090692 CAAAAACCAATGCTATCTATCAAAAGG 57.909 33.333 0.00 0.00 0.00 3.11
838 839 9.643693 ACAAAAACCAATGCTATCTATCAAAAG 57.356 29.630 0.00 0.00 0.00 2.27
862 873 0.466372 TCCATCCCAACGCAAACACA 60.466 50.000 0.00 0.00 0.00 3.72
1161 1181 7.454260 ACACAGCTCATTATATAGTCGATCA 57.546 36.000 0.00 0.00 0.00 2.92
1174 1208 2.754552 ACACACAACAACACAGCTCATT 59.245 40.909 0.00 0.00 0.00 2.57
1239 1273 0.321564 CCGACAAGCCCTTGATGTCA 60.322 55.000 14.46 0.00 42.76 3.58
1293 1327 2.589540 CCGCTGCAGGGATTGGTA 59.410 61.111 30.57 0.00 0.00 3.25
1487 5908 7.758076 AGCAATGATCACACTATCATGTTTTTG 59.242 33.333 0.00 0.00 44.08 2.44
1733 6154 7.122799 GGTAAGTTATTTTGAATTCCAGGCTCT 59.877 37.037 2.27 0.00 0.00 4.09
1881 6309 2.289133 GGCCTCTCTCAATATCGGGAAC 60.289 54.545 0.00 0.00 0.00 3.62
1903 6332 6.769822 AGGAGGCTGTTGACAAAGATTATATG 59.230 38.462 0.00 0.00 0.00 1.78
2015 6449 4.202264 ACTCATATTTCACCGGCTAGAAGG 60.202 45.833 0.00 0.00 0.00 3.46
2022 6456 3.675467 GTGAACTCATATTTCACCGGC 57.325 47.619 0.00 0.00 44.79 6.13
2027 6461 8.806429 ATGTGGTAATGTGAACTCATATTTCA 57.194 30.769 6.96 4.62 38.39 2.69
2125 7228 9.174166 GCTAACCTAAGTCTAATTGATTTTCCA 57.826 33.333 0.00 0.00 0.00 3.53
2178 7290 4.703575 GGTTCACCCAAACTAACCCTAATC 59.296 45.833 0.00 0.00 36.24 1.75
2225 7339 7.758495 ACGTTGGAATATTGAGGTTTTACATC 58.242 34.615 0.00 0.00 0.00 3.06
2232 7346 5.160607 TCAGACGTTGGAATATTGAGGTT 57.839 39.130 0.00 0.00 0.00 3.50
2238 7352 8.964476 ATTCATTACTCAGACGTTGGAATATT 57.036 30.769 0.00 0.00 0.00 1.28
2268 7382 9.360093 CTAAACCACACAAGTTTTCATAAACAA 57.640 29.630 0.00 0.00 44.88 2.83
2269 7383 8.740906 TCTAAACCACACAAGTTTTCATAAACA 58.259 29.630 0.00 0.00 44.88 2.83
2270 7384 9.575783 TTCTAAACCACACAAGTTTTCATAAAC 57.424 29.630 0.00 0.00 43.19 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.