Multiple sequence alignment - TraesCS3B01G570100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G570100 chr3B 100.000 3522 0 0 1 3522 801613140 801609619 0.000000e+00 6505
1 TraesCS3B01G570100 chr3B 96.232 637 20 4 3 635 164257215 164256579 0.000000e+00 1040
2 TraesCS3B01G570100 chr3B 95.118 635 27 4 3 635 713503615 713502983 0.000000e+00 998
3 TraesCS3B01G570100 chr3B 84.783 414 30 14 1413 1810 280585787 280586183 5.520000e-103 385
4 TraesCS3B01G570100 chr7D 97.172 1379 39 0 2144 3522 158644973 158643595 0.000000e+00 2331
5 TraesCS3B01G570100 chr7D 96.610 1062 36 0 2461 3522 139201910 139200849 0.000000e+00 1762
6 TraesCS3B01G570100 chr7D 93.147 788 33 9 610 1395 577332894 577332126 0.000000e+00 1136
7 TraesCS3B01G570100 chr7D 92.982 741 33 9 610 1347 65767243 65766519 0.000000e+00 1062
8 TraesCS3B01G570100 chr7D 95.888 608 11 1 1413 2020 158645565 158644972 0.000000e+00 972
9 TraesCS3B01G570100 chr7D 97.015 402 8 1 1413 1810 65766204 65765803 0.000000e+00 673
10 TraesCS3B01G570100 chr7D 94.724 398 7 1 1413 1810 577331838 577331455 1.080000e-169 606
11 TraesCS3B01G570100 chr6A 96.882 1379 43 0 2144 3522 580785587 580786965 0.000000e+00 2309
12 TraesCS3B01G570100 chr6A 96.232 1380 50 2 2144 3522 385570679 385569301 0.000000e+00 2259
13 TraesCS3B01G570100 chr6A 92.668 791 43 11 610 1395 385572357 385571577 0.000000e+00 1125
14 TraesCS3B01G570100 chr6A 93.887 638 34 5 1 635 56158532 56157897 0.000000e+00 957
15 TraesCS3B01G570100 chr6A 93.740 639 31 5 1 635 57135502 57134869 0.000000e+00 950
16 TraesCS3B01G570100 chr6A 93.914 608 23 3 1413 2020 385571271 385570678 0.000000e+00 905
17 TraesCS3B01G570100 chr6A 94.245 139 7 1 2018 2155 617047777 617047915 9.910000e-51 211
18 TraesCS3B01G570100 chr4D 96.519 1379 48 0 2144 3522 251092692 251091314 0.000000e+00 2281
19 TraesCS3B01G570100 chr4D 98.039 204 4 0 1817 2020 493213597 493213800 4.320000e-94 355
20 TraesCS3B01G570100 chr2A 96.447 1379 47 1 2144 3522 731837049 731838425 0.000000e+00 2274
21 TraesCS3B01G570100 chr2A 93.523 772 33 6 610 1379 731835209 731835965 0.000000e+00 1133
22 TraesCS3B01G570100 chr2A 95.664 369 11 1 1413 1781 731836284 731836647 3.920000e-164 588
23 TraesCS3B01G570100 chr2A 97.154 246 7 0 1775 2020 731836805 731837050 1.960000e-112 416
24 TraesCS3B01G570100 chr7A 95.649 1379 60 0 2144 3522 26227480 26226102 0.000000e+00 2215
25 TraesCS3B01G570100 chr7A 94.044 638 34 4 1 635 650807627 650808263 0.000000e+00 965
26 TraesCS3B01G570100 chr7A 93.374 649 32 11 1 643 432751962 432751319 0.000000e+00 950
27 TraesCS3B01G570100 chr7A 96.581 468 16 0 1413 1880 26228005 26227538 0.000000e+00 776
28 TraesCS3B01G570100 chr7A 95.588 136 6 0 2014 2149 732841422 732841287 5.920000e-53 219
29 TraesCS3B01G570100 chr7A 95.556 135 6 0 2011 2145 648146825 648146691 2.130000e-52 217
30 TraesCS3B01G570100 chr7A 95.556 135 6 0 2014 2148 736527798 736527664 2.130000e-52 217
31 TraesCS3B01G570100 chr1A 95.580 1380 59 2 2144 3522 503676463 503675085 0.000000e+00 2209
32 TraesCS3B01G570100 chr1A 93.282 774 37 6 625 1395 503678122 503677361 0.000000e+00 1127
33 TraesCS3B01G570100 chr1A 95.395 608 14 1 1413 2020 503677055 503676462 0.000000e+00 955
34 TraesCS3B01G570100 chr1A 94.928 138 5 1 2010 2145 12159674 12159811 7.660000e-52 215
35 TraesCS3B01G570100 chr2B 94.561 1379 62 5 2144 3522 733355972 733354607 0.000000e+00 2119
36 TraesCS3B01G570100 chr2B 95.620 137 5 1 2017 2152 577199748 577199884 5.920000e-53 219
37 TraesCS3B01G570100 chr1B 94.581 775 29 6 610 1379 671831306 671832072 0.000000e+00 1186
38 TraesCS3B01G570100 chr1B 96.053 608 9 10 1413 2020 671832375 671832967 0.000000e+00 976
39 TraesCS3B01G570100 chr3D 93.523 772 34 8 625 1395 584382126 584381370 0.000000e+00 1134
40 TraesCS3B01G570100 chr3D 98.039 204 4 0 1817 2020 77840945 77841148 4.320000e-94 355
41 TraesCS3B01G570100 chr3A 92.617 772 41 5 610 1379 734238829 734239586 0.000000e+00 1096
42 TraesCS3B01G570100 chr3A 94.901 608 17 1 1413 2020 734239906 734240499 0.000000e+00 939
43 TraesCS3B01G570100 chr5B 95.775 639 20 6 3 635 10092703 10092066 0.000000e+00 1024
44 TraesCS3B01G570100 chr7B 95.455 638 24 4 3 635 469016116 469016753 0.000000e+00 1013
45 TraesCS3B01G570100 chr5D 91.401 721 41 9 610 1322 556290003 556289296 0.000000e+00 968
46 TraesCS3B01G570100 chr5A 93.935 643 33 6 1 640 668527920 668528559 0.000000e+00 966
47 TraesCS3B01G570100 chr5A 92.105 152 8 4 2005 2154 81476826 81476677 9.910000e-51 211
48 TraesCS3B01G570100 chr1D 94.961 516 26 0 3007 3522 408983393 408983908 0.000000e+00 809
49 TraesCS3B01G570100 chr2D 98.039 204 4 0 1817 2020 65812175 65812378 4.320000e-94 355
50 TraesCS3B01G570100 chr6D 92.453 212 16 0 3311 3522 21354561 21354772 1.590000e-78 303
51 TraesCS3B01G570100 chr4B 96.923 130 4 0 2019 2148 438338066 438337937 5.920000e-53 219
52 TraesCS3B01G570100 chr6B 92.517 147 10 1 2007 2152 445884220 445884366 3.560000e-50 209


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G570100 chr3B 801609619 801613140 3521 True 6505.000000 6505 100.000000 1 3522 1 chr3B.!!$R3 3521
1 TraesCS3B01G570100 chr3B 164256579 164257215 636 True 1040.000000 1040 96.232000 3 635 1 chr3B.!!$R1 632
2 TraesCS3B01G570100 chr3B 713502983 713503615 632 True 998.000000 998 95.118000 3 635 1 chr3B.!!$R2 632
3 TraesCS3B01G570100 chr7D 139200849 139201910 1061 True 1762.000000 1762 96.610000 2461 3522 1 chr7D.!!$R1 1061
4 TraesCS3B01G570100 chr7D 158643595 158645565 1970 True 1651.500000 2331 96.530000 1413 3522 2 chr7D.!!$R3 2109
5 TraesCS3B01G570100 chr7D 577331455 577332894 1439 True 871.000000 1136 93.935500 610 1810 2 chr7D.!!$R4 1200
6 TraesCS3B01G570100 chr7D 65765803 65767243 1440 True 867.500000 1062 94.998500 610 1810 2 chr7D.!!$R2 1200
7 TraesCS3B01G570100 chr6A 580785587 580786965 1378 False 2309.000000 2309 96.882000 2144 3522 1 chr6A.!!$F1 1378
8 TraesCS3B01G570100 chr6A 385569301 385572357 3056 True 1429.666667 2259 94.271333 610 3522 3 chr6A.!!$R3 2912
9 TraesCS3B01G570100 chr6A 56157897 56158532 635 True 957.000000 957 93.887000 1 635 1 chr6A.!!$R1 634
10 TraesCS3B01G570100 chr6A 57134869 57135502 633 True 950.000000 950 93.740000 1 635 1 chr6A.!!$R2 634
11 TraesCS3B01G570100 chr4D 251091314 251092692 1378 True 2281.000000 2281 96.519000 2144 3522 1 chr4D.!!$R1 1378
12 TraesCS3B01G570100 chr2A 731835209 731838425 3216 False 1102.750000 2274 95.697000 610 3522 4 chr2A.!!$F1 2912
13 TraesCS3B01G570100 chr7A 26226102 26228005 1903 True 1495.500000 2215 96.115000 1413 3522 2 chr7A.!!$R5 2109
14 TraesCS3B01G570100 chr7A 650807627 650808263 636 False 965.000000 965 94.044000 1 635 1 chr7A.!!$F1 634
15 TraesCS3B01G570100 chr7A 432751319 432751962 643 True 950.000000 950 93.374000 1 643 1 chr7A.!!$R1 642
16 TraesCS3B01G570100 chr1A 503675085 503678122 3037 True 1430.333333 2209 94.752333 625 3522 3 chr1A.!!$R1 2897
17 TraesCS3B01G570100 chr2B 733354607 733355972 1365 True 2119.000000 2119 94.561000 2144 3522 1 chr2B.!!$R1 1378
18 TraesCS3B01G570100 chr1B 671831306 671832967 1661 False 1081.000000 1186 95.317000 610 2020 2 chr1B.!!$F1 1410
19 TraesCS3B01G570100 chr3D 584381370 584382126 756 True 1134.000000 1134 93.523000 625 1395 1 chr3D.!!$R1 770
20 TraesCS3B01G570100 chr3A 734238829 734240499 1670 False 1017.500000 1096 93.759000 610 2020 2 chr3A.!!$F1 1410
21 TraesCS3B01G570100 chr5B 10092066 10092703 637 True 1024.000000 1024 95.775000 3 635 1 chr5B.!!$R1 632
22 TraesCS3B01G570100 chr7B 469016116 469016753 637 False 1013.000000 1013 95.455000 3 635 1 chr7B.!!$F1 632
23 TraesCS3B01G570100 chr5D 556289296 556290003 707 True 968.000000 968 91.401000 610 1322 1 chr5D.!!$R1 712
24 TraesCS3B01G570100 chr5A 668527920 668528559 639 False 966.000000 966 93.935000 1 640 1 chr5A.!!$F1 639
25 TraesCS3B01G570100 chr1D 408983393 408983908 515 False 809.000000 809 94.961000 3007 3522 1 chr1D.!!$F1 515

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
705 717 1.078848 GCACTTCCTCACCGCATCT 60.079 57.895 0.0 0.0 0.0 2.90 F
1071 1086 0.038159 CCTTCCTCGTCGACTGCTTT 60.038 55.000 14.7 0.0 0.0 3.51 F
2035 2551 0.038744 ACTACTCCCTCCGTTCCGAA 59.961 55.000 0.0 0.0 0.0 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2129 2645 2.158295 AGCATATACTCCCTCCGTTCCT 60.158 50.000 0.0 0.0 0.0 3.36 R
2130 2646 2.249139 AGCATATACTCCCTCCGTTCC 58.751 52.381 0.0 0.0 0.0 3.62 R
3167 3687 1.011968 CGTTTGGAATCAGGCGACGA 61.012 55.000 0.0 0.0 0.0 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 5.676532 ACCATTTTGTCAATTGTGCATTG 57.323 34.783 5.13 0.00 43.51 2.82
215 219 5.936956 GCCATTCCATGTTTGTTATTTTCCA 59.063 36.000 0.00 0.00 0.00 3.53
362 368 4.757657 TGGTCATAATGTTGTACTGCGTTT 59.242 37.500 0.00 0.00 0.00 3.60
505 511 2.308866 TCTCTTCTCCCCCATTTTCCAC 59.691 50.000 0.00 0.00 0.00 4.02
654 666 3.470888 CCCCTTCCAGATCGCCGT 61.471 66.667 0.00 0.00 0.00 5.68
705 717 1.078848 GCACTTCCTCACCGCATCT 60.079 57.895 0.00 0.00 0.00 2.90
1050 1065 1.376037 GGTGGTGGCCTTCTTCGAG 60.376 63.158 3.32 0.00 0.00 4.04
1071 1086 0.038159 CCTTCCTCGTCGACTGCTTT 60.038 55.000 14.70 0.00 0.00 3.51
1163 1190 1.144913 CTACCTCTCCCTCTCCCTCTG 59.855 61.905 0.00 0.00 0.00 3.35
1164 1191 1.457455 CCTCTCCCTCTCCCTCTGC 60.457 68.421 0.00 0.00 0.00 4.26
1165 1192 1.457455 CTCTCCCTCTCCCTCTGCC 60.457 68.421 0.00 0.00 0.00 4.85
1166 1193 1.938596 TCTCCCTCTCCCTCTGCCT 60.939 63.158 0.00 0.00 0.00 4.75
1167 1194 1.457455 CTCCCTCTCCCTCTGCCTC 60.457 68.421 0.00 0.00 0.00 4.70
1168 1195 1.938596 TCCCTCTCCCTCTGCCTCT 60.939 63.158 0.00 0.00 0.00 3.69
1333 1364 3.646715 TGCCCTGGGTTTCTCGGG 61.647 66.667 15.56 0.00 39.76 5.14
1334 1365 3.647771 GCCCTGGGTTTCTCGGGT 61.648 66.667 15.56 0.00 38.97 5.28
1379 1410 0.817634 TTGGTGTGCTGTGTACCTGC 60.818 55.000 0.00 0.00 38.42 4.85
1380 1411 1.071471 GGTGTGCTGTGTACCTGCT 59.929 57.895 12.13 0.00 38.70 4.24
1381 1412 0.535102 GGTGTGCTGTGTACCTGCTT 60.535 55.000 12.13 0.00 38.70 3.91
1382 1413 0.588252 GTGTGCTGTGTACCTGCTTG 59.412 55.000 12.13 0.00 38.70 4.01
1383 1414 1.165907 TGTGCTGTGTACCTGCTTGC 61.166 55.000 12.13 0.00 38.70 4.01
1384 1415 0.886490 GTGCTGTGTACCTGCTTGCT 60.886 55.000 12.13 0.00 38.70 3.91
1385 1416 0.179020 TGCTGTGTACCTGCTTGCTT 60.179 50.000 12.13 0.00 38.70 3.91
1386 1417 0.239347 GCTGTGTACCTGCTTGCTTG 59.761 55.000 0.00 0.00 35.32 4.01
1387 1418 1.882912 CTGTGTACCTGCTTGCTTGA 58.117 50.000 0.00 0.00 0.00 3.02
1388 1419 2.221169 CTGTGTACCTGCTTGCTTGAA 58.779 47.619 0.00 0.00 0.00 2.69
1389 1420 2.816087 CTGTGTACCTGCTTGCTTGAAT 59.184 45.455 0.00 0.00 0.00 2.57
1393 1424 3.753272 TGTACCTGCTTGCTTGAATTCTC 59.247 43.478 7.05 0.00 0.00 2.87
1394 1425 3.151912 ACCTGCTTGCTTGAATTCTCT 57.848 42.857 7.05 0.00 0.00 3.10
1397 1428 3.255149 CCTGCTTGCTTGAATTCTCTTGT 59.745 43.478 7.05 0.00 0.00 3.16
1398 1429 4.474113 CTGCTTGCTTGAATTCTCTTGTC 58.526 43.478 7.05 0.00 0.00 3.18
1399 1430 4.139786 TGCTTGCTTGAATTCTCTTGTCT 58.860 39.130 7.05 0.00 0.00 3.41
1401 1432 4.214971 GCTTGCTTGAATTCTCTTGTCTGA 59.785 41.667 7.05 0.00 0.00 3.27
1402 1433 5.278169 GCTTGCTTGAATTCTCTTGTCTGAA 60.278 40.000 7.05 0.00 0.00 3.02
1403 1434 6.569994 GCTTGCTTGAATTCTCTTGTCTGAAT 60.570 38.462 7.05 0.00 34.75 2.57
1404 1435 6.889301 TGCTTGAATTCTCTTGTCTGAATT 57.111 33.333 7.05 0.00 43.13 2.17
1459 1793 5.815233 TCTCTGAATTCTCTTCTTGTGGT 57.185 39.130 7.05 0.00 0.00 4.16
1479 1827 4.003648 GGTAGTATGAACTTGCTTGCAGT 58.996 43.478 0.00 0.00 37.15 4.40
1480 1828 5.175859 GGTAGTATGAACTTGCTTGCAGTA 58.824 41.667 0.00 0.00 37.15 2.74
1481 1829 5.817816 GGTAGTATGAACTTGCTTGCAGTAT 59.182 40.000 0.00 0.00 37.15 2.12
1482 1830 6.018669 GGTAGTATGAACTTGCTTGCAGTATC 60.019 42.308 0.00 0.00 37.15 2.24
1483 1831 4.878397 AGTATGAACTTGCTTGCAGTATCC 59.122 41.667 0.00 0.00 29.00 2.59
1484 1832 3.423539 TGAACTTGCTTGCAGTATCCT 57.576 42.857 0.00 0.00 0.00 3.24
1485 1833 3.076621 TGAACTTGCTTGCAGTATCCTG 58.923 45.455 0.00 0.00 41.91 3.86
1754 2106 6.831353 TGTCTTTGGTGGAGTATTTCTTGAAA 59.169 34.615 0.00 0.00 0.00 2.69
1773 2289 6.951062 TGAAATGTGTTGTATTCCTGTGAA 57.049 33.333 0.00 0.00 34.33 3.18
1840 2356 4.286707 AGCTCCCTGTAACCTTTTGTTTT 58.713 39.130 0.00 0.00 38.42 2.43
1996 2512 8.637986 ACTCTCATGCTTACTTAGATTAGAAGG 58.362 37.037 0.00 0.00 0.00 3.46
2018 2534 7.304497 AGGATTCTGTACAAGACAAACTACT 57.696 36.000 0.00 0.00 37.70 2.57
2019 2535 8.418597 AGGATTCTGTACAAGACAAACTACTA 57.581 34.615 0.00 0.00 37.70 1.82
2020 2536 8.305317 AGGATTCTGTACAAGACAAACTACTAC 58.695 37.037 0.00 0.00 37.70 2.73
2021 2537 8.305317 GGATTCTGTACAAGACAAACTACTACT 58.695 37.037 0.00 0.00 37.70 2.57
2022 2538 9.344309 GATTCTGTACAAGACAAACTACTACTC 57.656 37.037 0.00 0.00 37.70 2.59
2023 2539 7.211966 TCTGTACAAGACAAACTACTACTCC 57.788 40.000 0.00 0.00 37.70 3.85
2024 2540 6.208204 TCTGTACAAGACAAACTACTACTCCC 59.792 42.308 0.00 0.00 37.70 4.30
2025 2541 6.073314 TGTACAAGACAAACTACTACTCCCT 58.927 40.000 0.00 0.00 34.15 4.20
2026 2542 5.725325 ACAAGACAAACTACTACTCCCTC 57.275 43.478 0.00 0.00 0.00 4.30
2027 2543 4.527427 ACAAGACAAACTACTACTCCCTCC 59.473 45.833 0.00 0.00 0.00 4.30
2028 2544 3.354467 AGACAAACTACTACTCCCTCCG 58.646 50.000 0.00 0.00 0.00 4.63
2029 2545 3.087781 GACAAACTACTACTCCCTCCGT 58.912 50.000 0.00 0.00 0.00 4.69
2030 2546 3.504375 ACAAACTACTACTCCCTCCGTT 58.496 45.455 0.00 0.00 0.00 4.44
2031 2547 3.509184 ACAAACTACTACTCCCTCCGTTC 59.491 47.826 0.00 0.00 0.00 3.95
2032 2548 2.433662 ACTACTACTCCCTCCGTTCC 57.566 55.000 0.00 0.00 0.00 3.62
2033 2549 1.307097 CTACTACTCCCTCCGTTCCG 58.693 60.000 0.00 0.00 0.00 4.30
2034 2550 0.911769 TACTACTCCCTCCGTTCCGA 59.088 55.000 0.00 0.00 0.00 4.55
2035 2551 0.038744 ACTACTCCCTCCGTTCCGAA 59.961 55.000 0.00 0.00 0.00 4.30
2036 2552 1.341778 ACTACTCCCTCCGTTCCGAAT 60.342 52.381 0.00 0.00 0.00 3.34
2037 2553 1.755380 CTACTCCCTCCGTTCCGAATT 59.245 52.381 0.00 0.00 0.00 2.17
2038 2554 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
2039 2555 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
2040 2556 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
2041 2557 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
2042 2558 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
2043 2559 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
2044 2560 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
2045 2561 3.368116 CCTCCGTTCCGAATTACTTGTCT 60.368 47.826 0.00 0.00 0.00 3.41
2046 2562 4.243270 CTCCGTTCCGAATTACTTGTCTT 58.757 43.478 0.00 0.00 0.00 3.01
2047 2563 5.389859 TCCGTTCCGAATTACTTGTCTTA 57.610 39.130 0.00 0.00 0.00 2.10
2048 2564 5.404946 TCCGTTCCGAATTACTTGTCTTAG 58.595 41.667 0.00 0.00 0.00 2.18
2049 2565 5.183713 TCCGTTCCGAATTACTTGTCTTAGA 59.816 40.000 0.00 0.00 0.00 2.10
2050 2566 6.040878 CCGTTCCGAATTACTTGTCTTAGAT 58.959 40.000 0.00 0.00 0.00 1.98
2051 2567 6.534079 CCGTTCCGAATTACTTGTCTTAGATT 59.466 38.462 0.00 0.00 0.00 2.40
2052 2568 7.064253 CCGTTCCGAATTACTTGTCTTAGATTT 59.936 37.037 0.00 0.00 0.00 2.17
2053 2569 7.898309 CGTTCCGAATTACTTGTCTTAGATTTG 59.102 37.037 0.00 0.00 0.00 2.32
2054 2570 8.718734 GTTCCGAATTACTTGTCTTAGATTTGT 58.281 33.333 0.00 0.00 0.00 2.83
2055 2571 8.475331 TCCGAATTACTTGTCTTAGATTTGTC 57.525 34.615 0.00 0.00 0.00 3.18
2056 2572 8.311836 TCCGAATTACTTGTCTTAGATTTGTCT 58.688 33.333 0.00 0.00 0.00 3.41
2057 2573 9.582431 CCGAATTACTTGTCTTAGATTTGTCTA 57.418 33.333 0.00 0.00 0.00 2.59
2064 2580 8.407064 ACTTGTCTTAGATTTGTCTAGATACGG 58.593 37.037 0.00 0.00 0.00 4.02
2065 2581 7.273320 TGTCTTAGATTTGTCTAGATACGGG 57.727 40.000 0.00 0.00 0.00 5.28
2066 2582 6.832384 TGTCTTAGATTTGTCTAGATACGGGT 59.168 38.462 0.00 0.00 0.00 5.28
2067 2583 7.140048 GTCTTAGATTTGTCTAGATACGGGTG 58.860 42.308 0.00 0.00 0.00 4.61
2068 2584 6.832384 TCTTAGATTTGTCTAGATACGGGTGT 59.168 38.462 0.00 0.00 0.00 4.16
2069 2585 7.994911 TCTTAGATTTGTCTAGATACGGGTGTA 59.005 37.037 0.00 0.00 34.45 2.90
2070 2586 8.701908 TTAGATTTGTCTAGATACGGGTGTAT 57.298 34.615 0.00 0.00 43.97 2.29
2083 2599 5.934402 ACGGGTGTATCTAGACTCATTTT 57.066 39.130 0.00 0.00 0.00 1.82
2084 2600 8.701908 ATACGGGTGTATCTAGACTCATTTTA 57.298 34.615 0.00 0.00 36.56 1.52
2085 2601 7.040473 ACGGGTGTATCTAGACTCATTTTAG 57.960 40.000 0.00 0.00 0.00 1.85
2086 2602 6.606395 ACGGGTGTATCTAGACTCATTTTAGT 59.394 38.462 0.00 0.00 0.00 2.24
2087 2603 6.918569 CGGGTGTATCTAGACTCATTTTAGTG 59.081 42.308 0.00 0.00 0.00 2.74
2088 2604 6.702282 GGGTGTATCTAGACTCATTTTAGTGC 59.298 42.308 0.00 0.00 0.00 4.40
2089 2605 7.418025 GGGTGTATCTAGACTCATTTTAGTGCT 60.418 40.741 0.00 0.00 0.00 4.40
2090 2606 8.630917 GGTGTATCTAGACTCATTTTAGTGCTA 58.369 37.037 0.00 0.00 0.00 3.49
2091 2607 9.672086 GTGTATCTAGACTCATTTTAGTGCTAG 57.328 37.037 0.00 0.00 33.34 3.42
2092 2608 9.628500 TGTATCTAGACTCATTTTAGTGCTAGA 57.372 33.333 0.00 0.00 38.76 2.43
2096 2612 9.628500 TCTAGACTCATTTTAGTGCTAGATACA 57.372 33.333 0.00 0.00 34.69 2.29
2099 2615 8.364142 AGACTCATTTTAGTGCTAGATACATCC 58.636 37.037 0.00 0.00 0.00 3.51
2100 2616 7.148641 ACTCATTTTAGTGCTAGATACATCCG 58.851 38.462 0.00 0.00 0.00 4.18
2101 2617 5.926542 TCATTTTAGTGCTAGATACATCCGC 59.073 40.000 0.00 0.00 0.00 5.54
2102 2618 4.929819 TTTAGTGCTAGATACATCCGCA 57.070 40.909 0.00 1.06 33.28 5.69
2103 2619 5.468540 TTTAGTGCTAGATACATCCGCAT 57.531 39.130 0.00 1.69 36.55 4.73
2104 2620 3.584406 AGTGCTAGATACATCCGCATC 57.416 47.619 0.00 3.10 36.55 3.91
2105 2621 3.161067 AGTGCTAGATACATCCGCATCT 58.839 45.455 0.00 0.00 36.55 2.90
2106 2622 4.336280 AGTGCTAGATACATCCGCATCTA 58.664 43.478 0.00 0.00 36.55 1.98
2112 2628 5.791336 AGATACATCCGCATCTAGACAAA 57.209 39.130 0.00 0.00 29.66 2.83
2113 2629 6.352016 AGATACATCCGCATCTAGACAAAT 57.648 37.500 0.00 0.00 29.66 2.32
2114 2630 6.393990 AGATACATCCGCATCTAGACAAATC 58.606 40.000 0.00 0.00 29.66 2.17
2115 2631 4.679373 ACATCCGCATCTAGACAAATCT 57.321 40.909 0.00 0.00 39.15 2.40
2116 2632 5.791336 ACATCCGCATCTAGACAAATCTA 57.209 39.130 0.00 0.00 36.29 1.98
2117 2633 6.161855 ACATCCGCATCTAGACAAATCTAA 57.838 37.500 0.00 0.00 36.98 2.10
2118 2634 6.219473 ACATCCGCATCTAGACAAATCTAAG 58.781 40.000 0.00 0.00 36.98 2.18
2119 2635 6.040955 ACATCCGCATCTAGACAAATCTAAGA 59.959 38.462 0.00 0.00 36.98 2.10
2120 2636 5.833082 TCCGCATCTAGACAAATCTAAGAC 58.167 41.667 0.00 0.00 36.98 3.01
2121 2637 5.359860 TCCGCATCTAGACAAATCTAAGACA 59.640 40.000 0.00 0.00 36.98 3.41
2122 2638 6.042777 CCGCATCTAGACAAATCTAAGACAA 58.957 40.000 0.00 0.00 36.98 3.18
2123 2639 6.199908 CCGCATCTAGACAAATCTAAGACAAG 59.800 42.308 0.00 0.00 36.98 3.16
2124 2640 6.754209 CGCATCTAGACAAATCTAAGACAAGT 59.246 38.462 0.00 0.00 36.98 3.16
2125 2641 7.915923 CGCATCTAGACAAATCTAAGACAAGTA 59.084 37.037 0.00 0.00 36.98 2.24
2126 2642 9.587772 GCATCTAGACAAATCTAAGACAAGTAA 57.412 33.333 0.00 0.00 36.98 2.24
2136 2652 8.943909 AATCTAAGACAAGTAATTAGGAACGG 57.056 34.615 0.00 0.00 0.00 4.44
2137 2653 7.707624 TCTAAGACAAGTAATTAGGAACGGA 57.292 36.000 0.00 0.00 0.00 4.69
2138 2654 7.769220 TCTAAGACAAGTAATTAGGAACGGAG 58.231 38.462 0.00 0.00 0.00 4.63
2139 2655 5.340439 AGACAAGTAATTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
2140 2656 4.161754 AGACAAGTAATTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
2141 2657 4.098894 ACAAGTAATTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
2142 2658 4.161754 ACAAGTAATTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
2172 2688 6.183360 TGCTAGTCTTACTTACACTGTGTGTT 60.183 38.462 22.97 9.44 45.08 3.32
2399 2916 4.142071 TGTTTTGCTTGCAGGTCATTGTTA 60.142 37.500 0.00 0.00 0.00 2.41
2505 3023 9.784680 CCTATTTTCTCTGATGATTGTTTTGAG 57.215 33.333 0.00 0.00 0.00 3.02
2510 3028 4.984295 TCTGATGATTGTTTTGAGGTGGA 58.016 39.130 0.00 0.00 0.00 4.02
2532 3050 0.555769 ACCATGTGAACAACCTGGGT 59.444 50.000 0.00 0.00 46.05 4.51
2569 3087 1.003580 GCACCAAGGAGTTCATGGAGA 59.996 52.381 0.00 0.00 37.66 3.71
2575 3093 2.194859 AGGAGTTCATGGAGATGCTGT 58.805 47.619 0.00 0.00 0.00 4.40
2637 3155 7.016153 TCGGCTTCCCTATGATTATTATTGT 57.984 36.000 0.00 0.00 0.00 2.71
2723 3241 2.534298 CCTGATGACTGTGTAGAAGCG 58.466 52.381 0.00 0.00 0.00 4.68
2818 3336 6.202954 GCACACACTAGTTAATGTTCTGTCTT 59.797 38.462 0.00 0.00 0.00 3.01
2859 3378 5.014858 TCTGTTGTCTAGTTCTATCCGGTT 58.985 41.667 0.00 0.00 0.00 4.44
3086 3606 6.817184 TGTCATACTCAATAAGCTAGTTCCC 58.183 40.000 0.00 0.00 0.00 3.97
3167 3687 2.684881 GTGATGTCCATTCGCCTGATTT 59.315 45.455 0.00 0.00 0.00 2.17
3275 3808 4.752879 GGCGCGAGTTGGTGGCTA 62.753 66.667 12.10 0.00 39.61 3.93
3281 3814 1.905512 GAGTTGGTGGCTACGGGAT 59.094 57.895 0.00 0.00 0.00 3.85
3326 3859 3.261643 TGCTTCTGACTAATCCAGCTTCA 59.738 43.478 0.00 0.00 0.00 3.02
3430 3963 4.584327 ATGTTCTTGTAGTTTGGTTGCC 57.416 40.909 0.00 0.00 0.00 4.52
3435 3968 1.989706 TGTAGTTTGGTTGCCTTCCC 58.010 50.000 0.00 0.00 0.00 3.97
3493 4026 2.993220 TGTGAATCTGTCGTGCATGTAC 59.007 45.455 5.68 3.51 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 6.014669 TGAAGGACCTTCCAAATAATTGTTGG 60.015 38.462 27.79 13.88 45.89 3.77
118 120 1.611491 TCATTTTCCGAGTGCCCAAAC 59.389 47.619 0.00 0.00 0.00 2.93
689 701 0.904865 TGGAGATGCGGTGAGGAAGT 60.905 55.000 0.00 0.00 0.00 3.01
996 1011 2.452813 CGCACACCCGCACATAGAC 61.453 63.158 0.00 0.00 0.00 2.59
1050 1065 2.182030 CAGTCGACGAGGAAGGCC 59.818 66.667 10.46 0.00 0.00 5.19
1071 1086 2.970639 CGGCGGAACCAGAAGAGA 59.029 61.111 0.00 0.00 39.03 3.10
1138 1165 1.411930 GGAGAGGGAGAGGTAGGGTTC 60.412 61.905 0.00 0.00 0.00 3.62
1333 1364 5.652744 ATACCGCGAAATCACAAATCTAC 57.347 39.130 8.23 0.00 0.00 2.59
1334 1365 5.007234 CCAATACCGCGAAATCACAAATCTA 59.993 40.000 8.23 0.00 0.00 1.98
1379 1410 5.936686 TCAGACAAGAGAATTCAAGCAAG 57.063 39.130 8.44 0.00 0.00 4.01
1380 1411 6.889301 ATTCAGACAAGAGAATTCAAGCAA 57.111 33.333 8.44 0.00 30.67 3.91
1381 1412 6.889301 AATTCAGACAAGAGAATTCAAGCA 57.111 33.333 8.44 0.00 39.54 3.91
1387 1418 7.935755 TCTGACAAGAATTCAGACAAGAGAATT 59.064 33.333 8.44 0.00 43.69 2.17
1388 1419 7.448420 TCTGACAAGAATTCAGACAAGAGAAT 58.552 34.615 8.44 0.00 43.69 2.40
1389 1420 6.820335 TCTGACAAGAATTCAGACAAGAGAA 58.180 36.000 8.44 0.00 43.69 2.87
1397 1428 5.525012 CACACTGTTCTGACAAGAATTCAGA 59.475 40.000 8.44 0.00 46.25 3.27
1398 1429 5.295292 ACACACTGTTCTGACAAGAATTCAG 59.705 40.000 8.44 2.21 44.18 3.02
1399 1430 5.065090 CACACACTGTTCTGACAAGAATTCA 59.935 40.000 8.44 0.00 44.18 2.57
1401 1432 4.943705 ACACACACTGTTCTGACAAGAATT 59.056 37.500 0.00 0.00 44.18 2.17
1402 1433 4.333649 CACACACACTGTTCTGACAAGAAT 59.666 41.667 0.00 0.00 44.18 2.40
1403 1434 3.684305 CACACACACTGTTCTGACAAGAA 59.316 43.478 0.00 0.00 40.20 2.52
1404 1435 3.261580 CACACACACTGTTCTGACAAGA 58.738 45.455 0.00 0.00 34.85 3.02
1405 1436 2.352651 CCACACACACTGTTCTGACAAG 59.647 50.000 0.00 0.00 34.85 3.16
1407 1438 1.552792 TCCACACACACTGTTCTGACA 59.447 47.619 0.00 0.00 0.00 3.58
1408 1439 2.309528 TCCACACACACTGTTCTGAC 57.690 50.000 0.00 0.00 0.00 3.51
1409 1440 2.027653 TGTTCCACACACACTGTTCTGA 60.028 45.455 0.00 0.00 0.00 3.27
1410 1441 2.352651 CTGTTCCACACACACTGTTCTG 59.647 50.000 0.00 0.00 0.00 3.02
1411 1442 2.236146 TCTGTTCCACACACACTGTTCT 59.764 45.455 0.00 0.00 0.00 3.01
1438 1772 6.696411 ACTACCACAAGAAGAGAATTCAGAG 58.304 40.000 8.44 0.00 0.00 3.35
1459 1793 6.049149 GGATACTGCAAGCAAGTTCATACTA 58.951 40.000 0.00 0.00 37.60 1.82
1479 1827 3.711190 TCCAAGATACTGCAAGCAGGATA 59.289 43.478 24.29 10.39 46.79 2.59
1484 1832 4.162131 TGATACTCCAAGATACTGCAAGCA 59.838 41.667 0.00 0.00 37.60 3.91
1485 1833 4.697514 TGATACTCCAAGATACTGCAAGC 58.302 43.478 0.00 0.00 37.60 4.01
1486 1834 6.344500 AGTTGATACTCCAAGATACTGCAAG 58.656 40.000 0.00 0.00 42.29 4.01
1487 1835 6.299805 AGTTGATACTCCAAGATACTGCAA 57.700 37.500 0.00 0.00 0.00 4.08
1488 1836 5.939764 AGTTGATACTCCAAGATACTGCA 57.060 39.130 0.00 0.00 0.00 4.41
1489 1837 5.525378 CCAAGTTGATACTCCAAGATACTGC 59.475 44.000 3.87 0.00 31.99 4.40
1490 1838 6.878317 TCCAAGTTGATACTCCAAGATACTG 58.122 40.000 3.87 0.00 31.99 2.74
1491 1839 6.407525 GCTCCAAGTTGATACTCCAAGATACT 60.408 42.308 3.87 0.00 31.99 2.12
1492 1840 5.755861 GCTCCAAGTTGATACTCCAAGATAC 59.244 44.000 3.87 0.00 31.99 2.24
1840 2356 3.621268 GCTGCTATCGTGTTTGACCAATA 59.379 43.478 0.00 0.00 0.00 1.90
1996 2512 9.344309 GAGTAGTAGTTTGTCTTGTACAGAATC 57.656 37.037 0.00 0.00 39.87 2.52
2028 2544 8.718734 ACAAATCTAAGACAAGTAATTCGGAAC 58.281 33.333 0.00 0.00 0.00 3.62
2029 2545 8.842358 ACAAATCTAAGACAAGTAATTCGGAA 57.158 30.769 0.00 0.00 0.00 4.30
2030 2546 8.311836 AGACAAATCTAAGACAAGTAATTCGGA 58.688 33.333 0.00 0.00 31.46 4.55
2031 2547 8.480643 AGACAAATCTAAGACAAGTAATTCGG 57.519 34.615 0.00 0.00 31.46 4.30
2038 2554 8.407064 CCGTATCTAGACAAATCTAAGACAAGT 58.593 37.037 0.00 0.00 36.98 3.16
2039 2555 7.863375 CCCGTATCTAGACAAATCTAAGACAAG 59.137 40.741 0.00 0.00 36.98 3.16
2040 2556 7.341256 ACCCGTATCTAGACAAATCTAAGACAA 59.659 37.037 0.00 0.00 36.98 3.18
2041 2557 6.832384 ACCCGTATCTAGACAAATCTAAGACA 59.168 38.462 0.00 0.00 36.98 3.41
2042 2558 7.140048 CACCCGTATCTAGACAAATCTAAGAC 58.860 42.308 0.00 0.00 36.98 3.01
2043 2559 6.832384 ACACCCGTATCTAGACAAATCTAAGA 59.168 38.462 0.00 0.00 36.98 2.10
2044 2560 7.040473 ACACCCGTATCTAGACAAATCTAAG 57.960 40.000 0.00 0.00 36.98 2.18
2045 2561 8.701908 ATACACCCGTATCTAGACAAATCTAA 57.298 34.615 0.00 0.00 32.66 2.10
2059 2575 7.598759 AAAATGAGTCTAGATACACCCGTAT 57.401 36.000 0.00 0.00 41.16 3.06
2060 2576 7.776969 ACTAAAATGAGTCTAGATACACCCGTA 59.223 37.037 0.00 0.00 0.00 4.02
2061 2577 5.934402 AAAATGAGTCTAGATACACCCGT 57.066 39.130 0.00 0.00 0.00 5.28
2062 2578 6.918569 CACTAAAATGAGTCTAGATACACCCG 59.081 42.308 0.00 0.00 0.00 5.28
2063 2579 6.702282 GCACTAAAATGAGTCTAGATACACCC 59.298 42.308 0.00 0.00 0.00 4.61
2064 2580 7.493367 AGCACTAAAATGAGTCTAGATACACC 58.507 38.462 0.00 0.00 0.00 4.16
2065 2581 9.672086 CTAGCACTAAAATGAGTCTAGATACAC 57.328 37.037 0.00 0.00 33.53 2.90
2066 2582 9.628500 TCTAGCACTAAAATGAGTCTAGATACA 57.372 33.333 0.00 0.00 34.65 2.29
2070 2586 9.628500 TGTATCTAGCACTAAAATGAGTCTAGA 57.372 33.333 11.59 11.59 38.76 2.43
2073 2589 8.364142 GGATGTATCTAGCACTAAAATGAGTCT 58.636 37.037 0.00 0.00 0.00 3.24
2074 2590 7.327275 CGGATGTATCTAGCACTAAAATGAGTC 59.673 40.741 0.00 0.00 0.00 3.36
2075 2591 7.148641 CGGATGTATCTAGCACTAAAATGAGT 58.851 38.462 0.00 0.00 0.00 3.41
2076 2592 6.090088 GCGGATGTATCTAGCACTAAAATGAG 59.910 42.308 7.58 0.00 33.23 2.90
2077 2593 5.926542 GCGGATGTATCTAGCACTAAAATGA 59.073 40.000 7.58 0.00 33.23 2.57
2078 2594 5.696270 TGCGGATGTATCTAGCACTAAAATG 59.304 40.000 10.00 0.00 36.26 2.32
2079 2595 5.853936 TGCGGATGTATCTAGCACTAAAAT 58.146 37.500 10.00 0.00 36.26 1.82
2080 2596 5.270893 TGCGGATGTATCTAGCACTAAAA 57.729 39.130 10.00 0.00 36.26 1.52
2081 2597 4.929819 TGCGGATGTATCTAGCACTAAA 57.070 40.909 10.00 0.00 36.26 1.85
2082 2598 4.767409 AGATGCGGATGTATCTAGCACTAA 59.233 41.667 14.18 0.00 44.50 2.24
2083 2599 4.336280 AGATGCGGATGTATCTAGCACTA 58.664 43.478 14.18 0.00 44.50 2.74
2084 2600 3.161067 AGATGCGGATGTATCTAGCACT 58.839 45.455 14.18 11.52 44.50 4.40
2085 2601 3.584406 AGATGCGGATGTATCTAGCAC 57.416 47.619 14.18 10.15 44.50 4.40
2089 2605 6.894339 TTTGTCTAGATGCGGATGTATCTA 57.106 37.500 0.00 3.63 44.50 1.98
2091 2607 6.393990 AGATTTGTCTAGATGCGGATGTATC 58.606 40.000 0.00 0.00 37.47 2.24
2092 2608 6.352016 AGATTTGTCTAGATGCGGATGTAT 57.648 37.500 0.00 0.00 0.00 2.29
2093 2609 5.791336 AGATTTGTCTAGATGCGGATGTA 57.209 39.130 0.00 0.00 0.00 2.29
2094 2610 4.679373 AGATTTGTCTAGATGCGGATGT 57.321 40.909 0.00 0.00 0.00 3.06
2095 2611 6.364706 GTCTTAGATTTGTCTAGATGCGGATG 59.635 42.308 0.00 0.00 0.00 3.51
2096 2612 6.040955 TGTCTTAGATTTGTCTAGATGCGGAT 59.959 38.462 0.00 0.00 0.00 4.18
2097 2613 5.359860 TGTCTTAGATTTGTCTAGATGCGGA 59.640 40.000 0.00 0.00 0.00 5.54
2098 2614 5.592054 TGTCTTAGATTTGTCTAGATGCGG 58.408 41.667 0.00 0.00 0.00 5.69
2099 2615 6.754209 ACTTGTCTTAGATTTGTCTAGATGCG 59.246 38.462 0.00 0.00 0.00 4.73
2100 2616 9.587772 TTACTTGTCTTAGATTTGTCTAGATGC 57.412 33.333 0.00 0.00 0.00 3.91
2110 2626 9.379791 CCGTTCCTAATTACTTGTCTTAGATTT 57.620 33.333 0.00 0.00 0.00 2.17
2111 2627 8.755977 TCCGTTCCTAATTACTTGTCTTAGATT 58.244 33.333 0.00 0.00 0.00 2.40
2112 2628 8.302515 TCCGTTCCTAATTACTTGTCTTAGAT 57.697 34.615 0.00 0.00 0.00 1.98
2113 2629 7.147949 CCTCCGTTCCTAATTACTTGTCTTAGA 60.148 40.741 0.00 0.00 0.00 2.10
2114 2630 6.979238 CCTCCGTTCCTAATTACTTGTCTTAG 59.021 42.308 0.00 0.00 0.00 2.18
2115 2631 6.127253 CCCTCCGTTCCTAATTACTTGTCTTA 60.127 42.308 0.00 0.00 0.00 2.10
2116 2632 5.338137 CCCTCCGTTCCTAATTACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
2117 2633 4.161754 CCCTCCGTTCCTAATTACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
2118 2634 4.161001 TCCCTCCGTTCCTAATTACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
2119 2635 4.098894 TCCCTCCGTTCCTAATTACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
2120 2636 4.161754 ACTCCCTCCGTTCCTAATTACTTG 59.838 45.833 0.00 0.00 0.00 3.16
2121 2637 4.359996 ACTCCCTCCGTTCCTAATTACTT 58.640 43.478 0.00 0.00 0.00 2.24
2122 2638 3.991683 ACTCCCTCCGTTCCTAATTACT 58.008 45.455 0.00 0.00 0.00 2.24
2123 2639 7.545489 CATATACTCCCTCCGTTCCTAATTAC 58.455 42.308 0.00 0.00 0.00 1.89
2124 2640 6.154021 GCATATACTCCCTCCGTTCCTAATTA 59.846 42.308 0.00 0.00 0.00 1.40
2125 2641 5.046520 GCATATACTCCCTCCGTTCCTAATT 60.047 44.000 0.00 0.00 0.00 1.40
2126 2642 4.466726 GCATATACTCCCTCCGTTCCTAAT 59.533 45.833 0.00 0.00 0.00 1.73
2127 2643 3.830755 GCATATACTCCCTCCGTTCCTAA 59.169 47.826 0.00 0.00 0.00 2.69
2128 2644 3.075582 AGCATATACTCCCTCCGTTCCTA 59.924 47.826 0.00 0.00 0.00 2.94
2129 2645 2.158295 AGCATATACTCCCTCCGTTCCT 60.158 50.000 0.00 0.00 0.00 3.36
2130 2646 2.249139 AGCATATACTCCCTCCGTTCC 58.751 52.381 0.00 0.00 0.00 3.62
2131 2647 4.080687 ACTAGCATATACTCCCTCCGTTC 58.919 47.826 0.00 0.00 0.00 3.95
2132 2648 4.080687 GACTAGCATATACTCCCTCCGTT 58.919 47.826 0.00 0.00 0.00 4.44
2133 2649 3.331294 AGACTAGCATATACTCCCTCCGT 59.669 47.826 0.00 0.00 0.00 4.69
2134 2650 3.958018 AGACTAGCATATACTCCCTCCG 58.042 50.000 0.00 0.00 0.00 4.63
2135 2651 6.486941 AGTAAGACTAGCATATACTCCCTCC 58.513 44.000 0.00 0.00 0.00 4.30
2136 2652 8.949177 GTAAGTAAGACTAGCATATACTCCCTC 58.051 40.741 0.00 0.00 0.00 4.30
2137 2653 8.446394 TGTAAGTAAGACTAGCATATACTCCCT 58.554 37.037 0.00 0.00 0.00 4.20
2138 2654 8.513774 GTGTAAGTAAGACTAGCATATACTCCC 58.486 40.741 0.00 0.00 0.00 4.30
2139 2655 9.287373 AGTGTAAGTAAGACTAGCATATACTCC 57.713 37.037 0.00 0.00 0.00 3.85
2141 2657 9.629878 ACAGTGTAAGTAAGACTAGCATATACT 57.370 33.333 0.00 0.00 0.00 2.12
2142 2658 9.666626 CACAGTGTAAGTAAGACTAGCATATAC 57.333 37.037 0.00 0.00 0.00 1.47
2172 2688 7.833285 AGAAAATTAAAGTAGAGTGCCCAAA 57.167 32.000 0.00 0.00 0.00 3.28
2399 2916 2.521958 CTTCCCGTGACGGCCTTCAT 62.522 60.000 20.39 0.00 46.86 2.57
2569 3087 3.813724 GCCCCAGCCCTACAGCAT 61.814 66.667 0.00 0.00 34.23 3.79
2637 3155 2.841215 ACACTAAAACCAGCGCTACAA 58.159 42.857 10.99 0.00 0.00 2.41
2723 3241 2.795329 ACACATGAATCCAACCACTCC 58.205 47.619 0.00 0.00 0.00 3.85
2859 3378 3.104512 CATGGGGCCCTAATCGAGTATA 58.895 50.000 25.93 0.00 0.00 1.47
3136 3656 2.064434 TGGACATCACACTTGCCAAA 57.936 45.000 0.00 0.00 0.00 3.28
3167 3687 1.011968 CGTTTGGAATCAGGCGACGA 61.012 55.000 0.00 0.00 0.00 4.20
3275 3808 4.752879 CGTGCCGTCCAATCCCGT 62.753 66.667 0.00 0.00 0.00 5.28
3281 3814 1.966901 ATATGAGCCGTGCCGTCCAA 61.967 55.000 0.00 0.00 0.00 3.53
3326 3859 2.834638 AATGCCCAGCTAGACCAAAT 57.165 45.000 0.00 0.00 0.00 2.32
3430 3963 4.196626 ACAAACATGCATGAATGGGAAG 57.803 40.909 32.75 14.42 31.46 3.46
3435 3968 4.740268 AGCTGTACAAACATGCATGAATG 58.260 39.130 32.75 27.94 34.37 2.67
3493 4026 7.092079 TGTATTCAACATTTCCTGCATTTCAG 58.908 34.615 0.00 0.00 36.45 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.