Multiple sequence alignment - TraesCS3B01G569700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G569700 chr3B 100.000 3732 0 0 647 4378 801231216 801234947 0.000000e+00 6892.0
1 TraesCS3B01G569700 chr3B 100.000 507 0 0 1 507 801230570 801231076 0.000000e+00 937.0
2 TraesCS3B01G569700 chr3B 82.969 916 130 11 2539 3442 798648190 798649091 0.000000e+00 804.0
3 TraesCS3B01G569700 chr3B 93.662 142 8 1 3706 3847 741865980 741865840 1.230000e-50 211.0
4 TraesCS3B01G569700 chr3B 95.604 91 2 2 319 409 193961298 193961386 1.270000e-30 145.0
5 TraesCS3B01G569700 chr3B 93.814 97 5 1 324 419 793269202 793269106 1.270000e-30 145.0
6 TraesCS3B01G569700 chr3D 98.370 1166 18 1 2547 3711 596718825 596717660 0.000000e+00 2047.0
7 TraesCS3B01G569700 chr3D 96.125 929 35 1 647 1574 596720688 596719760 0.000000e+00 1515.0
8 TraesCS3B01G569700 chr3D 95.075 731 34 2 1655 2384 596719758 596719029 0.000000e+00 1149.0
9 TraesCS3B01G569700 chr3D 83.139 943 131 13 2539 3469 595739017 595739943 0.000000e+00 835.0
10 TraesCS3B01G569700 chr3D 84.412 834 115 6 2641 3466 595286610 595285784 0.000000e+00 806.0
11 TraesCS3B01G569700 chr3D 81.481 918 143 15 2539 3442 595705188 595706092 0.000000e+00 728.0
12 TraesCS3B01G569700 chr3D 94.321 405 15 3 3982 4378 596714225 596713821 8.050000e-172 614.0
13 TraesCS3B01G569700 chr3D 96.024 327 9 4 1 326 596721146 596720823 3.000000e-146 529.0
14 TraesCS3B01G569700 chr3D 96.203 158 6 0 3834 3991 596717662 596717505 4.340000e-65 259.0
15 TraesCS3B01G569700 chr3D 95.333 150 6 1 2400 2548 596719062 596718913 2.040000e-58 237.0
16 TraesCS3B01G569700 chr3D 94.000 100 6 0 408 507 596720824 596720725 7.580000e-33 152.0
17 TraesCS3B01G569700 chr3D 89.091 55 4 2 412 465 175405732 175405679 2.830000e-07 67.6
18 TraesCS3B01G569700 chr3A 82.909 942 132 13 2539 3468 726515646 726516570 0.000000e+00 821.0
19 TraesCS3B01G569700 chr3A 83.852 836 119 7 2641 3468 726410804 726409977 0.000000e+00 782.0
20 TraesCS3B01G569700 chr3A 82.404 915 136 14 2539 3442 726458185 726459085 0.000000e+00 774.0
21 TraesCS3B01G569700 chr3A 82.045 841 121 17 2615 3439 726381712 726380886 0.000000e+00 689.0
22 TraesCS3B01G569700 chr3A 85.866 283 36 4 2212 2492 697605059 697604779 9.200000e-77 298.0
23 TraesCS3B01G569700 chr3A 94.074 135 7 1 3706 3840 638984858 638984991 2.060000e-48 204.0
24 TraesCS3B01G569700 chr3A 97.727 44 1 0 2184 2227 303149022 303149065 4.700000e-10 76.8
25 TraesCS3B01G569700 chr3A 95.455 44 2 0 2184 2227 303099869 303099912 2.180000e-08 71.3
26 TraesCS3B01G569700 chr1A 87.197 289 34 3 2185 2472 541517510 541517796 4.220000e-85 326.0
27 TraesCS3B01G569700 chr5B 88.593 263 26 4 2212 2472 508786412 508786152 2.540000e-82 316.0
28 TraesCS3B01G569700 chr5B 87.833 263 28 4 2212 2472 508792282 508792022 5.500000e-79 305.0
29 TraesCS3B01G569700 chr5B 87.833 263 28 4 2212 2472 508794440 508794180 5.500000e-79 305.0
30 TraesCS3B01G569700 chr5B 95.522 134 5 1 3707 3839 581144516 581144383 3.430000e-51 213.0
31 TraesCS3B01G569700 chr5B 93.617 141 8 1 3702 3842 640272875 640272736 4.440000e-50 209.0
32 TraesCS3B01G569700 chr5B 93.007 143 9 1 3701 3842 165087652 165087794 1.600000e-49 207.0
33 TraesCS3B01G569700 chr5B 92.308 104 4 4 320 421 676928193 676928092 1.270000e-30 145.0
34 TraesCS3B01G569700 chr5B 95.652 46 2 0 412 457 425880163 425880118 1.690000e-09 75.0
35 TraesCS3B01G569700 chr5B 91.837 49 4 0 412 460 693583845 693583797 7.860000e-08 69.4
36 TraesCS3B01G569700 chr5B 91.304 46 4 0 412 457 33551724 33551679 3.660000e-06 63.9
37 TraesCS3B01G569700 chr4B 88.213 263 27 4 2212 2472 384287721 384287981 1.180000e-80 311.0
38 TraesCS3B01G569700 chr4B 95.699 93 3 1 318 409 399947051 399946959 9.810000e-32 148.0
39 TraesCS3B01G569700 chr6A 87.833 263 30 2 2212 2473 539714968 539714707 1.530000e-79 307.0
40 TraesCS3B01G569700 chr6A 93.333 60 2 2 4075 4132 37058834 37058775 2.170000e-13 87.9
41 TraesCS3B01G569700 chr6A 97.727 44 1 0 2184 2227 350839376 350839419 4.700000e-10 76.8
42 TraesCS3B01G569700 chr2A 88.123 261 27 4 2214 2472 597494247 597494505 1.530000e-79 307.0
43 TraesCS3B01G569700 chr2A 93.750 48 3 0 409 456 146960307 146960354 6.070000e-09 73.1
44 TraesCS3B01G569700 chr2A 89.655 58 4 2 4075 4130 641950181 641950124 6.070000e-09 73.1
45 TraesCS3B01G569700 chr2A 88.333 60 5 2 4075 4132 539973581 539973522 2.180000e-08 71.3
46 TraesCS3B01G569700 chr2D 82.069 290 33 6 2185 2472 624018618 624018346 3.410000e-56 230.0
47 TraesCS3B01G569700 chr7B 96.923 130 4 0 3707 3836 551815273 551815402 7.370000e-53 219.0
48 TraesCS3B01G569700 chr7B 91.262 103 9 0 311 413 156955550 156955448 1.640000e-29 141.0
49 TraesCS3B01G569700 chr6B 95.522 134 5 1 3707 3839 715773222 715773355 3.430000e-51 213.0
50 TraesCS3B01G569700 chr6B 85.526 76 9 2 390 463 203933505 203933580 1.310000e-10 78.7
51 TraesCS3B01G569700 chr6B 86.207 58 6 2 401 456 657091766 657091709 1.310000e-05 62.1
52 TraesCS3B01G569700 chr4D 94.815 135 7 0 3710 3844 117644075 117643941 1.230000e-50 211.0
53 TraesCS3B01G569700 chr4D 93.269 104 4 3 312 413 16403549 16403447 2.730000e-32 150.0
54 TraesCS3B01G569700 chr4D 93.750 48 2 1 412 458 93339410 93339457 2.180000e-08 71.3
55 TraesCS3B01G569700 chr1B 91.837 147 10 2 3694 3839 633238458 633238313 2.060000e-48 204.0
56 TraesCS3B01G569700 chr1B 87.838 74 6 3 4062 4134 15559193 15559264 2.810000e-12 84.2
57 TraesCS3B01G569700 chr1B 84.146 82 10 3 4053 4132 2928380 2928460 4.700000e-10 76.8
58 TraesCS3B01G569700 chr1D 95.789 95 2 2 323 415 6790592 6790686 7.580000e-33 152.0
59 TraesCS3B01G569700 chr1D 93.333 45 3 0 412 456 84570876 84570832 2.830000e-07 67.6
60 TraesCS3B01G569700 chr1D 93.182 44 3 0 412 455 352413924 352413881 1.020000e-06 65.8
61 TraesCS3B01G569700 chr2B 91.429 105 7 2 325 427 582299517 582299621 4.560000e-30 143.0
62 TraesCS3B01G569700 chr2B 90.741 108 5 5 304 409 334693887 334693991 5.900000e-29 139.0
63 TraesCS3B01G569700 chr2B 95.556 45 2 0 412 456 768617913 768617869 6.070000e-09 73.1
64 TraesCS3B01G569700 chr4A 91.262 103 8 1 325 426 697941992 697942094 5.900000e-29 139.0
65 TraesCS3B01G569700 chrUn 91.667 60 3 2 4075 4132 108364560 108364501 1.010000e-11 82.4
66 TraesCS3B01G569700 chrUn 91.837 49 4 0 407 455 100763036 100762988 7.860000e-08 69.4
67 TraesCS3B01G569700 chr6D 91.803 61 2 2 4075 4132 32649779 32649719 1.010000e-11 82.4
68 TraesCS3B01G569700 chr5A 97.619 42 1 0 2185 2226 511876752 511876711 6.070000e-09 73.1
69 TraesCS3B01G569700 chr5A 95.122 41 1 1 4090 4129 705825791 705825831 3.660000e-06 63.9
70 TraesCS3B01G569700 chr5D 97.368 38 0 1 2186 2223 406164244 406164208 3.660000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G569700 chr3B 801230570 801234947 4377 False 3914.50 6892 100.000000 1 4378 2 chr3B.!!$F3 4377
1 TraesCS3B01G569700 chr3B 798648190 798649091 901 False 804.00 804 82.969000 2539 3442 1 chr3B.!!$F2 903
2 TraesCS3B01G569700 chr3D 595739017 595739943 926 False 835.00 835 83.139000 2539 3469 1 chr3D.!!$F2 930
3 TraesCS3B01G569700 chr3D 596713821 596721146 7325 True 812.75 2047 95.681375 1 4378 8 chr3D.!!$R3 4377
4 TraesCS3B01G569700 chr3D 595285784 595286610 826 True 806.00 806 84.412000 2641 3466 1 chr3D.!!$R2 825
5 TraesCS3B01G569700 chr3D 595705188 595706092 904 False 728.00 728 81.481000 2539 3442 1 chr3D.!!$F1 903
6 TraesCS3B01G569700 chr3A 726515646 726516570 924 False 821.00 821 82.909000 2539 3468 1 chr3A.!!$F5 929
7 TraesCS3B01G569700 chr3A 726409977 726410804 827 True 782.00 782 83.852000 2641 3468 1 chr3A.!!$R3 827
8 TraesCS3B01G569700 chr3A 726458185 726459085 900 False 774.00 774 82.404000 2539 3442 1 chr3A.!!$F4 903
9 TraesCS3B01G569700 chr3A 726380886 726381712 826 True 689.00 689 82.045000 2615 3439 1 chr3A.!!$R2 824
10 TraesCS3B01G569700 chr5B 508792022 508794440 2418 True 305.00 305 87.833000 2212 2472 2 chr5B.!!$R8 260

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
120 121 0.107361 ATTTTTCCTCCTACCCGCCG 60.107 55.0 0.00 0.00 0.00 6.46 F
716 718 0.390860 AAGGGTGCGCTAGATAGCTG 59.609 55.0 9.73 5.12 46.85 4.24 F
1447 1450 0.475906 CCTCCTTCACATCCCATCCC 59.524 60.0 0.00 0.00 0.00 3.85 F
1617 1620 0.035630 CTTTGCTGCTAGCCTGACCT 60.036 55.0 13.29 0.00 41.51 3.85 F
1618 1621 0.036010 TTTGCTGCTAGCCTGACCTC 60.036 55.0 13.29 0.00 41.51 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1598 1601 0.035630 AGGTCAGGCTAGCAGCAAAG 60.036 55.000 18.24 0.0 44.75 2.77 R
1599 1602 0.036010 GAGGTCAGGCTAGCAGCAAA 60.036 55.000 18.24 0.0 44.75 3.68 R
2608 4859 1.234615 CGCCAACAATTCCACTCGGT 61.235 55.000 0.00 0.0 0.00 4.69 R
2801 5061 1.931841 TCGAAGACGAGACGATACTGG 59.068 52.381 0.00 0.0 43.81 4.00 R
3477 5751 2.791170 GCAGAGCCAGGGATTCTTG 58.209 57.895 0.00 0.0 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 3.696548 GGATTGGGTGAATTTCCAGTCTC 59.303 47.826 14.04 6.56 39.04 3.36
55 56 3.540314 TTCCTTTGTTTGCATTGCACT 57.460 38.095 11.66 0.00 38.71 4.40
60 61 3.797451 TTGTTTGCATTGCACTCAAGA 57.203 38.095 11.66 0.00 38.71 3.02
97 98 4.270808 TGCGCTATGTAATGAATGTGACTG 59.729 41.667 9.73 0.00 0.00 3.51
98 99 4.766007 CGCTATGTAATGAATGTGACTGC 58.234 43.478 0.00 0.00 0.00 4.40
102 103 7.095481 CGCTATGTAATGAATGTGACTGCTAAT 60.095 37.037 0.00 0.00 0.00 1.73
103 104 8.562892 GCTATGTAATGAATGTGACTGCTAATT 58.437 33.333 0.00 0.00 0.00 1.40
120 121 0.107361 ATTTTTCCTCCTACCCGCCG 60.107 55.000 0.00 0.00 0.00 6.46
121 122 2.187896 TTTTTCCTCCTACCCGCCGG 62.188 60.000 0.00 0.00 0.00 6.13
178 179 2.782925 AGTCTCTCTAGAGCCTCATGGA 59.217 50.000 15.35 2.02 41.80 3.41
229 230 2.288395 GCCGGCCTCATGGAATTTATTG 60.288 50.000 18.11 0.00 34.57 1.90
296 298 8.906867 TCATAATTGGTCATCATCTTTTTCTCC 58.093 33.333 0.00 0.00 0.00 3.71
326 328 7.390027 AGAACCATCAAGCACATATATCCTAC 58.610 38.462 0.00 0.00 0.00 3.18
328 330 6.940739 ACCATCAAGCACATATATCCTACTC 58.059 40.000 0.00 0.00 0.00 2.59
330 332 6.344500 CATCAAGCACATATATCCTACTCCC 58.656 44.000 0.00 0.00 0.00 4.30
331 333 5.655394 TCAAGCACATATATCCTACTCCCT 58.345 41.667 0.00 0.00 0.00 4.20
332 334 5.717178 TCAAGCACATATATCCTACTCCCTC 59.283 44.000 0.00 0.00 0.00 4.30
333 335 4.615513 AGCACATATATCCTACTCCCTCC 58.384 47.826 0.00 0.00 0.00 4.30
334 336 3.381908 GCACATATATCCTACTCCCTCCG 59.618 52.174 0.00 0.00 0.00 4.63
335 337 4.601084 CACATATATCCTACTCCCTCCGT 58.399 47.826 0.00 0.00 0.00 4.69
336 338 5.017490 CACATATATCCTACTCCCTCCGTT 58.983 45.833 0.00 0.00 0.00 4.44
337 339 5.125739 CACATATATCCTACTCCCTCCGTTC 59.874 48.000 0.00 0.00 0.00 3.95
338 340 2.671896 TATCCTACTCCCTCCGTTCC 57.328 55.000 0.00 0.00 0.00 3.62
339 341 0.467659 ATCCTACTCCCTCCGTTCCG 60.468 60.000 0.00 0.00 0.00 4.30
340 342 1.077212 CCTACTCCCTCCGTTCCGA 60.077 63.158 0.00 0.00 0.00 4.55
341 343 0.467659 CCTACTCCCTCCGTTCCGAT 60.468 60.000 0.00 0.00 0.00 4.18
342 344 1.400737 CTACTCCCTCCGTTCCGATT 58.599 55.000 0.00 0.00 0.00 3.34
343 345 1.755380 CTACTCCCTCCGTTCCGATTT 59.245 52.381 0.00 0.00 0.00 2.17
344 346 1.856629 ACTCCCTCCGTTCCGATTTA 58.143 50.000 0.00 0.00 0.00 1.40
345 347 1.479730 ACTCCCTCCGTTCCGATTTAC 59.520 52.381 0.00 0.00 0.00 2.01
346 348 1.755380 CTCCCTCCGTTCCGATTTACT 59.245 52.381 0.00 0.00 0.00 2.24
347 349 2.167900 CTCCCTCCGTTCCGATTTACTT 59.832 50.000 0.00 0.00 0.00 2.24
348 350 2.093869 TCCCTCCGTTCCGATTTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
349 351 2.354403 CCCTCCGTTCCGATTTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
350 352 2.928116 CCTCCGTTCCGATTTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
351 353 2.597305 CTCCGTTCCGATTTACTTGTCG 59.403 50.000 0.00 0.00 37.58 4.35
352 354 2.030007 TCCGTTCCGATTTACTTGTCGT 60.030 45.455 0.00 0.00 36.17 4.34
353 355 2.091588 CCGTTCCGATTTACTTGTCGTG 59.908 50.000 0.00 0.00 36.17 4.35
354 356 2.091588 CGTTCCGATTTACTTGTCGTGG 59.908 50.000 0.00 0.00 36.17 4.94
355 357 3.062042 GTTCCGATTTACTTGTCGTGGT 58.938 45.455 0.00 0.00 36.17 4.16
356 358 3.389925 TCCGATTTACTTGTCGTGGTT 57.610 42.857 0.00 0.00 36.17 3.67
357 359 3.731089 TCCGATTTACTTGTCGTGGTTT 58.269 40.909 0.00 0.00 36.17 3.27
358 360 4.128643 TCCGATTTACTTGTCGTGGTTTT 58.871 39.130 0.00 0.00 36.17 2.43
359 361 5.295950 TCCGATTTACTTGTCGTGGTTTTA 58.704 37.500 0.00 0.00 36.17 1.52
360 362 5.406175 TCCGATTTACTTGTCGTGGTTTTAG 59.594 40.000 0.00 0.00 36.17 1.85
361 363 5.178067 CCGATTTACTTGTCGTGGTTTTAGT 59.822 40.000 0.00 0.00 36.17 2.24
362 364 6.293027 CCGATTTACTTGTCGTGGTTTTAGTT 60.293 38.462 0.00 0.00 36.17 2.24
363 365 6.788930 CGATTTACTTGTCGTGGTTTTAGTTC 59.211 38.462 0.00 0.00 33.42 3.01
364 366 6.981762 TTTACTTGTCGTGGTTTTAGTTCA 57.018 33.333 0.00 0.00 0.00 3.18
365 367 6.981762 TTACTTGTCGTGGTTTTAGTTCAA 57.018 33.333 0.00 0.00 0.00 2.69
366 368 7.556733 TTACTTGTCGTGGTTTTAGTTCAAT 57.443 32.000 0.00 0.00 0.00 2.57
367 369 6.445357 ACTTGTCGTGGTTTTAGTTCAATT 57.555 33.333 0.00 0.00 0.00 2.32
368 370 6.859017 ACTTGTCGTGGTTTTAGTTCAATTT 58.141 32.000 0.00 0.00 0.00 1.82
369 371 6.750039 ACTTGTCGTGGTTTTAGTTCAATTTG 59.250 34.615 0.00 0.00 0.00 2.32
370 372 6.438259 TGTCGTGGTTTTAGTTCAATTTGA 57.562 33.333 0.00 0.00 0.00 2.69
371 373 6.853720 TGTCGTGGTTTTAGTTCAATTTGAA 58.146 32.000 7.74 7.74 33.32 2.69
385 387 5.503498 TCAATTTGAACTAAAACCACGACG 58.497 37.500 0.00 0.00 0.00 5.12
386 388 5.293814 TCAATTTGAACTAAAACCACGACGA 59.706 36.000 0.00 0.00 0.00 4.20
387 389 4.782252 TTTGAACTAAAACCACGACGAG 57.218 40.909 0.00 0.00 0.00 4.18
388 390 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
389 391 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
390 392 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
391 393 5.347342 TGAACTAAAACCACGACGAGTAAA 58.653 37.500 0.00 0.00 0.00 2.01
392 394 5.984926 TGAACTAAAACCACGACGAGTAAAT 59.015 36.000 0.00 0.00 0.00 1.40
393 395 6.144402 TGAACTAAAACCACGACGAGTAAATC 59.856 38.462 0.00 0.00 0.00 2.17
406 408 4.048241 GAGTAAATCGGAACAGAGGGAG 57.952 50.000 0.00 0.00 0.00 4.30
407 409 3.442076 AGTAAATCGGAACAGAGGGAGT 58.558 45.455 0.00 0.00 0.00 3.85
408 410 4.607239 AGTAAATCGGAACAGAGGGAGTA 58.393 43.478 0.00 0.00 0.00 2.59
409 411 5.209659 AGTAAATCGGAACAGAGGGAGTAT 58.790 41.667 0.00 0.00 0.00 2.12
410 412 5.661759 AGTAAATCGGAACAGAGGGAGTATT 59.338 40.000 0.00 0.00 0.00 1.89
411 413 6.837568 AGTAAATCGGAACAGAGGGAGTATTA 59.162 38.462 0.00 0.00 0.00 0.98
412 414 5.793030 AATCGGAACAGAGGGAGTATTAG 57.207 43.478 0.00 0.00 0.00 1.73
413 415 4.246712 TCGGAACAGAGGGAGTATTAGT 57.753 45.455 0.00 0.00 0.00 2.24
414 416 4.607239 TCGGAACAGAGGGAGTATTAGTT 58.393 43.478 0.00 0.00 0.00 2.24
449 451 5.948992 AGACACTTATTTTTGGACAGAGC 57.051 39.130 0.00 0.00 0.00 4.09
716 718 0.390860 AAGGGTGCGCTAGATAGCTG 59.609 55.000 9.73 5.12 46.85 4.24
841 844 7.008021 ACACCATTTTGCTTTCCAATTCTAT 57.992 32.000 0.00 0.00 32.49 1.98
860 863 1.956869 TCCTCTCTCATCAGCCCAAA 58.043 50.000 0.00 0.00 0.00 3.28
936 939 6.731467 ACCAACTGGGACATAAATTACTGAT 58.269 36.000 0.00 0.00 41.15 2.90
953 956 4.858850 ACTGATTGACATAAAGATGCCCA 58.141 39.130 0.00 0.00 36.43 5.36
955 958 4.598022 TGATTGACATAAAGATGCCCACA 58.402 39.130 0.00 0.00 36.43 4.17
1015 1018 1.180029 CAGAATGCCCACAAGGAAGG 58.820 55.000 0.00 0.00 38.24 3.46
1037 1040 2.190313 GCACCCATCATCCGCTGA 59.810 61.111 0.00 0.00 38.53 4.26
1047 1050 2.502492 ATCCGCTGATCCTGACCCG 61.502 63.158 0.00 0.00 0.00 5.28
1056 1059 1.050988 ATCCTGACCCGGATGACCAG 61.051 60.000 0.73 2.19 42.13 4.00
1109 1112 3.094062 GCAGCGAGGACATAGGCCA 62.094 63.158 5.01 0.00 0.00 5.36
1195 1198 0.664767 GACACACACCTCTGACTCGC 60.665 60.000 0.00 0.00 0.00 5.03
1210 1213 2.184323 TCGCTCTGTTCGAGATGCT 58.816 52.632 0.00 0.00 42.62 3.79
1285 1288 1.202687 TGATGGGCCTAGCAGATTTCG 60.203 52.381 1.53 0.00 0.00 3.46
1344 1347 1.445942 CGACGGTAATGGCTGGGAT 59.554 57.895 0.00 0.00 0.00 3.85
1362 1365 3.330110 GGGATGATGAAGAGGGTGATGAT 59.670 47.826 0.00 0.00 0.00 2.45
1373 1376 1.269831 GGGTGATGATAGCCAGTCGTC 60.270 57.143 0.00 0.00 38.12 4.20
1418 1421 3.364889 TGAGTAAGTGAACTGTGGACG 57.635 47.619 0.00 0.00 0.00 4.79
1447 1450 0.475906 CCTCCTTCACATCCCATCCC 59.524 60.000 0.00 0.00 0.00 3.85
1467 1470 1.021390 ATCGCCTCCGTTGCTTTCTG 61.021 55.000 0.00 0.00 35.54 3.02
1477 1480 4.083324 TCCGTTGCTTTCTGTCATGATTTC 60.083 41.667 0.00 0.00 0.00 2.17
1484 1487 4.771590 TTCTGTCATGATTTCCTGTTGC 57.228 40.909 0.00 0.00 0.00 4.17
1520 1523 0.961857 TGTACGCTAGCTTCGGTCCA 60.962 55.000 13.93 0.00 0.00 4.02
1523 1526 2.415608 CGCTAGCTTCGGTCCAGGA 61.416 63.158 13.93 0.00 0.00 3.86
1531 1534 1.320344 TTCGGTCCAGGATCCAGTCG 61.320 60.000 15.82 12.77 0.00 4.18
1532 1535 1.753078 CGGTCCAGGATCCAGTCGA 60.753 63.158 15.82 0.00 0.00 4.20
1543 1546 2.477176 CCAGTCGAGAGGAGAGCCG 61.477 68.421 0.00 0.00 39.96 5.52
1545 1548 4.244802 GTCGAGAGGAGAGCCGCG 62.245 72.222 0.00 0.00 39.22 6.46
1566 1569 0.744414 CTGGTCTGGTTGGCGGTATG 60.744 60.000 0.00 0.00 0.00 2.39
1578 1581 3.199891 GGTATGGCCGGTGAACGC 61.200 66.667 1.90 0.00 42.52 4.84
1579 1582 2.435234 GTATGGCCGGTGAACGCA 60.435 61.111 1.90 0.00 42.52 5.24
1580 1583 1.817941 GTATGGCCGGTGAACGCAT 60.818 57.895 1.90 0.00 42.52 4.73
1581 1584 1.522806 TATGGCCGGTGAACGCATC 60.523 57.895 1.90 0.00 42.52 3.91
1582 1585 2.245438 TATGGCCGGTGAACGCATCA 62.245 55.000 1.90 0.00 42.52 3.07
1583 1586 2.824041 GGCCGGTGAACGCATCAT 60.824 61.111 1.90 0.00 40.97 2.45
1584 1587 2.709475 GCCGGTGAACGCATCATC 59.291 61.111 1.90 0.00 40.97 2.92
1585 1588 1.815421 GCCGGTGAACGCATCATCT 60.815 57.895 1.90 0.00 40.97 2.90
1586 1589 1.369091 GCCGGTGAACGCATCATCTT 61.369 55.000 1.90 0.00 40.97 2.40
1587 1590 1.086696 CCGGTGAACGCATCATCTTT 58.913 50.000 0.00 0.00 40.97 2.52
1588 1591 1.468520 CCGGTGAACGCATCATCTTTT 59.531 47.619 0.00 0.00 40.97 2.27
1589 1592 2.508867 CGGTGAACGCATCATCTTTTG 58.491 47.619 1.20 0.00 40.97 2.44
1590 1593 2.095768 CGGTGAACGCATCATCTTTTGT 60.096 45.455 1.20 0.00 40.97 2.83
1591 1594 3.609175 CGGTGAACGCATCATCTTTTGTT 60.609 43.478 1.20 0.00 40.97 2.83
1592 1595 3.914364 GGTGAACGCATCATCTTTTGTTC 59.086 43.478 0.00 0.00 40.97 3.18
1593 1596 4.320494 GGTGAACGCATCATCTTTTGTTCT 60.320 41.667 4.77 0.00 40.97 3.01
1594 1597 4.614284 GTGAACGCATCATCTTTTGTTCTG 59.386 41.667 4.77 0.00 40.97 3.02
1595 1598 3.837213 ACGCATCATCTTTTGTTCTGG 57.163 42.857 0.00 0.00 0.00 3.86
1596 1599 2.095059 ACGCATCATCTTTTGTTCTGGC 60.095 45.455 0.00 0.00 0.00 4.85
1597 1600 2.163010 CGCATCATCTTTTGTTCTGGCT 59.837 45.455 0.00 0.00 0.00 4.75
1598 1601 3.730061 CGCATCATCTTTTGTTCTGGCTC 60.730 47.826 0.00 0.00 0.00 4.70
1599 1602 3.442977 GCATCATCTTTTGTTCTGGCTCT 59.557 43.478 0.00 0.00 0.00 4.09
1600 1603 4.082354 GCATCATCTTTTGTTCTGGCTCTT 60.082 41.667 0.00 0.00 0.00 2.85
1601 1604 5.566230 GCATCATCTTTTGTTCTGGCTCTTT 60.566 40.000 0.00 0.00 0.00 2.52
1602 1605 5.443185 TCATCTTTTGTTCTGGCTCTTTG 57.557 39.130 0.00 0.00 0.00 2.77
1603 1606 3.715628 TCTTTTGTTCTGGCTCTTTGC 57.284 42.857 0.00 0.00 41.94 3.68
1604 1607 3.290710 TCTTTTGTTCTGGCTCTTTGCT 58.709 40.909 0.00 0.00 42.39 3.91
1605 1608 3.067180 TCTTTTGTTCTGGCTCTTTGCTG 59.933 43.478 0.00 0.00 42.39 4.41
1606 1609 0.670162 TTGTTCTGGCTCTTTGCTGC 59.330 50.000 0.00 0.00 42.39 5.25
1607 1610 0.179009 TGTTCTGGCTCTTTGCTGCT 60.179 50.000 0.00 0.00 42.39 4.24
1608 1611 1.072173 TGTTCTGGCTCTTTGCTGCTA 59.928 47.619 0.00 0.00 42.39 3.49
1609 1612 1.736681 GTTCTGGCTCTTTGCTGCTAG 59.263 52.381 0.00 0.00 42.39 3.42
1610 1613 0.392193 TCTGGCTCTTTGCTGCTAGC 60.392 55.000 8.10 8.10 42.82 3.42
1612 1615 4.633769 GCTCTTTGCTGCTAGCCT 57.366 55.556 13.29 0.00 41.51 4.58
1613 1616 2.096596 GCTCTTTGCTGCTAGCCTG 58.903 57.895 13.29 6.36 41.51 4.85
1614 1617 0.392193 GCTCTTTGCTGCTAGCCTGA 60.392 55.000 13.29 0.66 41.51 3.86
1615 1618 1.367659 CTCTTTGCTGCTAGCCTGAC 58.632 55.000 13.29 0.00 41.51 3.51
1616 1619 0.036010 TCTTTGCTGCTAGCCTGACC 60.036 55.000 13.29 0.00 41.51 4.02
1617 1620 0.035630 CTTTGCTGCTAGCCTGACCT 60.036 55.000 13.29 0.00 41.51 3.85
1618 1621 0.036010 TTTGCTGCTAGCCTGACCTC 60.036 55.000 13.29 0.00 41.51 3.85
1619 1622 0.906756 TTGCTGCTAGCCTGACCTCT 60.907 55.000 13.29 0.00 41.51 3.69
1620 1623 0.906756 TGCTGCTAGCCTGACCTCTT 60.907 55.000 13.29 0.00 41.51 2.85
1621 1624 0.461693 GCTGCTAGCCTGACCTCTTG 60.462 60.000 13.29 0.00 34.48 3.02
1622 1625 0.461693 CTGCTAGCCTGACCTCTTGC 60.462 60.000 13.29 0.00 0.00 4.01
1623 1626 1.153269 GCTAGCCTGACCTCTTGCC 60.153 63.158 2.29 0.00 0.00 4.52
1624 1627 1.621672 GCTAGCCTGACCTCTTGCCT 61.622 60.000 2.29 0.00 0.00 4.75
1625 1628 1.781786 CTAGCCTGACCTCTTGCCTA 58.218 55.000 0.00 0.00 0.00 3.93
1626 1629 1.686052 CTAGCCTGACCTCTTGCCTAG 59.314 57.143 0.00 0.00 0.00 3.02
1627 1630 1.153269 GCCTGACCTCTTGCCTAGC 60.153 63.158 0.00 0.00 0.00 3.42
1628 1631 1.903877 GCCTGACCTCTTGCCTAGCA 61.904 60.000 0.00 0.00 36.47 3.49
1629 1632 0.615331 CCTGACCTCTTGCCTAGCAA 59.385 55.000 1.57 1.57 46.80 3.91
1639 1642 2.710096 TGCCTAGCAATGGTCTTACC 57.290 50.000 0.00 0.00 35.35 2.85
1640 1643 1.912731 TGCCTAGCAATGGTCTTACCA 59.087 47.619 0.42 0.42 43.13 3.25
1649 1652 2.710096 TGGTCTTACCATGCTTAGGC 57.290 50.000 0.00 0.00 44.79 3.93
1650 1653 1.912731 TGGTCTTACCATGCTTAGGCA 59.087 47.619 0.47 0.47 44.79 4.75
1651 1654 2.355716 TGGTCTTACCATGCTTAGGCAC 60.356 50.000 0.00 0.00 44.79 5.01
1652 1655 5.515090 TGGTCTTACCATGCTTAGGCACC 62.515 52.174 0.00 0.00 44.79 5.01
1673 1676 1.341156 ATGTGGACTCCCTAGCCAGC 61.341 60.000 0.00 0.00 32.01 4.85
1702 1705 2.489329 CAGTCCACCCATGTTCATGTTC 59.511 50.000 11.13 0.00 0.00 3.18
1727 1730 0.250467 TGCTTCTGTGAAGACTGCCC 60.250 55.000 11.03 0.00 0.00 5.36
1728 1731 0.250467 GCTTCTGTGAAGACTGCCCA 60.250 55.000 11.03 0.00 0.00 5.36
1790 1793 3.073678 TGATGGTGATTGGAAACACGAG 58.926 45.455 0.00 0.00 42.67 4.18
1797 1800 4.455877 GTGATTGGAAACACGAGGAAGATT 59.544 41.667 0.00 0.00 42.67 2.40
1835 1838 3.126831 GACATAGAGTGGAGCGAAATGG 58.873 50.000 0.00 0.00 0.00 3.16
1865 1868 3.429543 GCGGAACATTAGTGTAACAACGA 59.570 43.478 0.00 0.00 41.43 3.85
1879 1882 4.336889 AACAACGATGAAACTGAGAGGA 57.663 40.909 0.00 0.00 0.00 3.71
1891 1894 2.503356 ACTGAGAGGATGATGTGGAACC 59.497 50.000 0.00 0.00 34.36 3.62
2035 2038 1.344114 CATGGTGGTGGTTTCAAAGGG 59.656 52.381 0.00 0.00 0.00 3.95
2073 2076 9.528018 AAAGACAAGTTAAAAACCATACATGTG 57.472 29.630 9.11 0.00 0.00 3.21
2137 2140 6.603237 TGAACAATGCTTCTATATGTTCCG 57.397 37.500 12.72 0.00 45.71 4.30
2149 2152 7.606135 TCTATATGTTCCGGTTCTTATTCCA 57.394 36.000 0.00 0.00 0.00 3.53
2167 2170 2.935849 TCCATTACATAGCAACGCACAG 59.064 45.455 0.00 0.00 0.00 3.66
2200 2203 1.710244 TCCAAGGGCCTCTTTGATTCA 59.290 47.619 6.46 0.00 32.41 2.57
2207 2210 4.418190 AGGGCCTCTTTGATTCATAGGATT 59.582 41.667 0.00 0.00 0.00 3.01
2246 2249 8.777578 AATAGGTTGACATGTCCTATAGTACA 57.222 34.615 22.85 0.10 41.80 2.90
2247 2250 8.958060 ATAGGTTGACATGTCCTATAGTACAT 57.042 34.615 22.85 5.18 41.14 2.29
2275 2278 5.783111 TGATTTGAGAGAATGTTCGACAGA 58.217 37.500 0.00 0.00 0.00 3.41
2284 2287 1.865865 TGTTCGACAGAGCAGGAAAC 58.134 50.000 0.00 0.00 32.57 2.78
2292 2295 3.817647 GACAGAGCAGGAAACACAAAGAT 59.182 43.478 0.00 0.00 0.00 2.40
2305 2308 8.451748 GGAAACACAAAGATATCCTACAAAGAC 58.548 37.037 0.00 0.00 0.00 3.01
2395 4556 3.495434 ACCAATCCTACGAACCAAACA 57.505 42.857 0.00 0.00 0.00 2.83
2397 4558 3.566742 ACCAATCCTACGAACCAAACAAC 59.433 43.478 0.00 0.00 0.00 3.32
2405 4566 2.955660 ACGAACCAAACAACCATCACAT 59.044 40.909 0.00 0.00 0.00 3.21
2514 4675 4.886489 TGCATGTATATTGGCTTAGTGCAA 59.114 37.500 0.00 0.00 45.15 4.08
2529 4690 7.359181 GGCTTAGTGCAACATTTTGTTTCATAC 60.359 37.037 0.00 0.00 38.77 2.39
2608 4859 6.500589 AATAATGGGCTCTTGCTTCTACTA 57.499 37.500 0.00 0.00 39.59 1.82
2611 4862 1.202428 GGGCTCTTGCTTCTACTACCG 60.202 57.143 0.00 0.00 39.59 4.02
2801 5061 2.160417 CGTCAAGGCAAAGATCCAAGAC 59.840 50.000 0.00 0.00 0.00 3.01
3605 5879 2.218603 CAAAAGCCTAACACCGTGACT 58.781 47.619 5.28 0.00 0.00 3.41
3712 5986 9.911788 ATCAGAGTTGGAATCAAAATATGTACT 57.088 29.630 0.00 0.00 34.28 2.73
3713 5987 9.383519 TCAGAGTTGGAATCAAAATATGTACTC 57.616 33.333 0.00 0.00 34.28 2.59
3714 5988 8.616076 CAGAGTTGGAATCAAAATATGTACTCC 58.384 37.037 0.00 0.00 34.28 3.85
3715 5989 7.775561 AGAGTTGGAATCAAAATATGTACTCCC 59.224 37.037 0.00 0.00 34.28 4.30
3716 5990 7.643123 AGTTGGAATCAAAATATGTACTCCCT 58.357 34.615 0.00 0.00 34.28 4.20
3717 5991 7.775561 AGTTGGAATCAAAATATGTACTCCCTC 59.224 37.037 0.00 0.00 34.28 4.30
3718 5992 6.601332 TGGAATCAAAATATGTACTCCCTCC 58.399 40.000 0.00 0.00 0.00 4.30
3719 5993 5.701290 GGAATCAAAATATGTACTCCCTCCG 59.299 44.000 0.00 0.00 0.00 4.63
3720 5994 5.888982 ATCAAAATATGTACTCCCTCCGT 57.111 39.130 0.00 0.00 0.00 4.69
3721 5995 5.272283 TCAAAATATGTACTCCCTCCGTC 57.728 43.478 0.00 0.00 0.00 4.79
3722 5996 4.100498 TCAAAATATGTACTCCCTCCGTCC 59.900 45.833 0.00 0.00 0.00 4.79
3723 5997 2.305858 ATATGTACTCCCTCCGTCCC 57.694 55.000 0.00 0.00 0.00 4.46
3724 5998 0.928505 TATGTACTCCCTCCGTCCCA 59.071 55.000 0.00 0.00 0.00 4.37
3725 5999 0.042131 ATGTACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.00 0.00 4.12
3726 6000 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
3727 6001 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
3728 6002 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
3729 6003 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
3730 6004 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
3731 6005 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
3732 6006 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
3733 6007 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
3734 6008 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
3735 6009 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
3736 6010 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
3737 6011 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
3738 6012 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
3739 6013 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
3740 6014 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
3741 6015 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
3742 6016 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
3743 6017 7.244192 CGTCCCAAAATTCTTGTCTTAGATTC 58.756 38.462 0.00 0.00 0.00 2.52
3744 6018 7.244192 GTCCCAAAATTCTTGTCTTAGATTCG 58.756 38.462 0.00 0.00 0.00 3.34
3745 6019 6.940298 TCCCAAAATTCTTGTCTTAGATTCGT 59.060 34.615 0.00 0.00 0.00 3.85
3746 6020 7.119262 TCCCAAAATTCTTGTCTTAGATTCGTC 59.881 37.037 0.00 0.00 0.00 4.20
3747 6021 7.119846 CCCAAAATTCTTGTCTTAGATTCGTCT 59.880 37.037 0.00 0.00 0.00 4.18
3748 6022 9.151471 CCAAAATTCTTGTCTTAGATTCGTCTA 57.849 33.333 0.00 0.00 0.00 2.59
3754 6028 8.074474 TCTTGTCTTAGATTCGTCTAGATACG 57.926 38.462 0.00 0.00 44.19 3.06
3792 6066 8.547967 ACTAAAACATGACTTGATACATTCGT 57.452 30.769 0.00 0.00 0.00 3.85
3793 6067 9.647797 ACTAAAACATGACTTGATACATTCGTA 57.352 29.630 0.00 0.00 0.00 3.43
3802 6076 9.863845 TGACTTGATACATTCGTATTTAGACAA 57.136 29.630 0.00 0.00 38.48 3.18
3828 6102 9.784531 AATCTAAGACAAGAATTTTGAGACAGA 57.215 29.630 7.18 5.41 0.00 3.41
3829 6103 8.824159 TCTAAGACAAGAATTTTGAGACAGAG 57.176 34.615 7.18 0.00 0.00 3.35
3830 6104 6.874288 AAGACAAGAATTTTGAGACAGAGG 57.126 37.500 7.18 0.00 0.00 3.69
3831 6105 5.312079 AGACAAGAATTTTGAGACAGAGGG 58.688 41.667 7.18 0.00 0.00 4.30
3832 6106 5.072329 AGACAAGAATTTTGAGACAGAGGGA 59.928 40.000 7.18 0.00 0.00 4.20
3833 6107 5.312079 ACAAGAATTTTGAGACAGAGGGAG 58.688 41.667 7.18 0.00 0.00 4.30
3834 6108 5.163152 ACAAGAATTTTGAGACAGAGGGAGT 60.163 40.000 7.18 0.00 0.00 3.85
3835 6109 6.043243 ACAAGAATTTTGAGACAGAGGGAGTA 59.957 38.462 7.18 0.00 0.00 2.59
4028 9591 3.362831 CACTCCGACGTGTGTATGTAAAC 59.637 47.826 0.00 0.00 0.00 2.01
4037 9600 4.024387 CGTGTGTATGTAAACTGTTGGCTT 60.024 41.667 0.00 0.00 0.00 4.35
4042 9605 5.594725 TGTATGTAAACTGTTGGCTTTGGAA 59.405 36.000 0.00 0.00 0.00 3.53
4052 9615 3.534357 TGGCTTTGGAACCTGGAAATA 57.466 42.857 0.00 0.00 0.00 1.40
4151 9719 1.455822 TTGGGATTGGAGGGAGTGTT 58.544 50.000 0.00 0.00 0.00 3.32
4226 9794 1.199327 TCAGTGGACGAGCTTTCTACG 59.801 52.381 7.01 0.00 30.17 3.51
4236 9804 1.296715 CTTTCTACGGGCCTGCAGT 59.703 57.895 12.89 5.19 0.00 4.40
4327 9895 8.359642 TGAAATTGATTAGAAAACTGGAAGGTG 58.640 33.333 0.00 0.00 39.30 4.00
4331 9899 8.477419 TTGATTAGAAAACTGGAAGGTGAAAT 57.523 30.769 0.00 0.00 39.30 2.17
4342 9910 5.599732 TGGAAGGTGAAATTTGAACACATG 58.400 37.500 9.83 0.00 36.42 3.21
4360 9931 6.169094 ACACATGTCTTATCAGAGAAACCTG 58.831 40.000 0.00 0.00 35.55 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 3.872771 AGTGCAATGCAAACAAAGGAAAG 59.127 39.130 10.44 0.00 41.47 2.62
55 56 3.008330 GCAGTAGTCTACGGAGTCTTGA 58.992 50.000 13.60 0.00 43.93 3.02
97 98 2.617308 GCGGGTAGGAGGAAAAATTAGC 59.383 50.000 0.00 0.00 0.00 3.09
98 99 3.211865 GGCGGGTAGGAGGAAAAATTAG 58.788 50.000 0.00 0.00 0.00 1.73
102 103 1.297364 CGGCGGGTAGGAGGAAAAA 59.703 57.895 0.00 0.00 0.00 1.94
103 104 2.662070 CCGGCGGGTAGGAGGAAAA 61.662 63.158 20.56 0.00 0.00 2.29
120 121 1.797537 GTGCGAACAATTGCGAGCC 60.798 57.895 5.05 0.00 38.95 4.70
121 122 0.454957 ATGTGCGAACAATTGCGAGC 60.455 50.000 0.00 8.89 38.95 5.03
229 230 6.887013 AGATGCTGAGATATATGGGATGAAC 58.113 40.000 0.00 0.00 0.00 3.18
334 336 3.062042 ACCACGACAAGTAAATCGGAAC 58.938 45.455 0.00 0.00 42.67 3.62
335 337 3.389925 ACCACGACAAGTAAATCGGAA 57.610 42.857 0.00 0.00 42.67 4.30
336 338 3.389925 AACCACGACAAGTAAATCGGA 57.610 42.857 0.00 0.00 42.67 4.55
337 339 4.477302 AAAACCACGACAAGTAAATCGG 57.523 40.909 0.00 0.00 42.67 4.18
338 340 6.219302 ACTAAAACCACGACAAGTAAATCG 57.781 37.500 0.00 0.00 43.97 3.34
339 341 7.632721 TGAACTAAAACCACGACAAGTAAATC 58.367 34.615 0.00 0.00 0.00 2.17
340 342 7.556733 TGAACTAAAACCACGACAAGTAAAT 57.443 32.000 0.00 0.00 0.00 1.40
341 343 6.981762 TGAACTAAAACCACGACAAGTAAA 57.018 33.333 0.00 0.00 0.00 2.01
342 344 6.981762 TTGAACTAAAACCACGACAAGTAA 57.018 33.333 0.00 0.00 0.00 2.24
343 345 7.556733 AATTGAACTAAAACCACGACAAGTA 57.443 32.000 0.00 0.00 0.00 2.24
344 346 6.445357 AATTGAACTAAAACCACGACAAGT 57.555 33.333 0.00 0.00 0.00 3.16
345 347 6.970043 TCAAATTGAACTAAAACCACGACAAG 59.030 34.615 0.00 0.00 0.00 3.16
346 348 6.853720 TCAAATTGAACTAAAACCACGACAA 58.146 32.000 0.00 0.00 0.00 3.18
347 349 6.438259 TCAAATTGAACTAAAACCACGACA 57.562 33.333 0.00 0.00 0.00 4.35
361 363 5.966503 CGTCGTGGTTTTAGTTCAAATTGAA 59.033 36.000 4.03 4.03 33.32 2.69
362 364 5.293814 TCGTCGTGGTTTTAGTTCAAATTGA 59.706 36.000 0.00 0.00 0.00 2.57
363 365 5.503498 TCGTCGTGGTTTTAGTTCAAATTG 58.497 37.500 0.00 0.00 0.00 2.32
364 366 5.295045 ACTCGTCGTGGTTTTAGTTCAAATT 59.705 36.000 0.00 0.00 0.00 1.82
365 367 4.812626 ACTCGTCGTGGTTTTAGTTCAAAT 59.187 37.500 0.00 0.00 0.00 2.32
366 368 4.183101 ACTCGTCGTGGTTTTAGTTCAAA 58.817 39.130 0.00 0.00 0.00 2.69
367 369 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
368 370 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
369 371 5.888412 TTTACTCGTCGTGGTTTTAGTTC 57.112 39.130 0.00 0.00 0.00 3.01
370 372 5.117592 CGATTTACTCGTCGTGGTTTTAGTT 59.882 40.000 0.00 0.00 42.56 2.24
371 373 4.618489 CGATTTACTCGTCGTGGTTTTAGT 59.382 41.667 0.00 0.00 42.56 2.24
372 374 4.030977 CCGATTTACTCGTCGTGGTTTTAG 59.969 45.833 0.00 0.00 46.18 1.85
373 375 3.919804 CCGATTTACTCGTCGTGGTTTTA 59.080 43.478 0.00 0.00 46.18 1.52
374 376 2.733026 CCGATTTACTCGTCGTGGTTTT 59.267 45.455 0.00 0.00 46.18 2.43
375 377 2.030007 TCCGATTTACTCGTCGTGGTTT 60.030 45.455 0.00 0.00 46.18 3.27
376 378 1.541147 TCCGATTTACTCGTCGTGGTT 59.459 47.619 0.00 0.00 46.18 3.67
377 379 1.167851 TCCGATTTACTCGTCGTGGT 58.832 50.000 0.00 0.00 46.18 4.16
378 380 1.916000 GTTCCGATTTACTCGTCGTGG 59.084 52.381 0.00 0.00 46.18 4.94
379 381 2.587956 TGTTCCGATTTACTCGTCGTG 58.412 47.619 0.00 0.00 46.18 4.35
380 382 2.485426 TCTGTTCCGATTTACTCGTCGT 59.515 45.455 0.00 0.00 46.18 4.34
381 383 3.099362 CTCTGTTCCGATTTACTCGTCG 58.901 50.000 0.00 0.00 46.18 5.12
382 384 3.436496 CCTCTGTTCCGATTTACTCGTC 58.564 50.000 0.00 0.00 46.18 4.20
383 385 2.165845 CCCTCTGTTCCGATTTACTCGT 59.834 50.000 0.00 0.00 46.18 4.18
385 387 3.447944 ACTCCCTCTGTTCCGATTTACTC 59.552 47.826 0.00 0.00 0.00 2.59
386 388 3.442076 ACTCCCTCTGTTCCGATTTACT 58.558 45.455 0.00 0.00 0.00 2.24
387 389 3.889520 ACTCCCTCTGTTCCGATTTAC 57.110 47.619 0.00 0.00 0.00 2.01
388 390 6.837568 ACTAATACTCCCTCTGTTCCGATTTA 59.162 38.462 0.00 0.00 0.00 1.40
389 391 5.661759 ACTAATACTCCCTCTGTTCCGATTT 59.338 40.000 0.00 0.00 0.00 2.17
390 392 5.209659 ACTAATACTCCCTCTGTTCCGATT 58.790 41.667 0.00 0.00 0.00 3.34
391 393 4.805744 ACTAATACTCCCTCTGTTCCGAT 58.194 43.478 0.00 0.00 0.00 4.18
392 394 4.246712 ACTAATACTCCCTCTGTTCCGA 57.753 45.455 0.00 0.00 0.00 4.55
393 395 5.593502 ACTAACTAATACTCCCTCTGTTCCG 59.406 44.000 0.00 0.00 0.00 4.30
394 396 7.559170 TGTACTAACTAATACTCCCTCTGTTCC 59.441 40.741 0.00 0.00 0.00 3.62
395 397 8.517062 TGTACTAACTAATACTCCCTCTGTTC 57.483 38.462 0.00 0.00 0.00 3.18
396 398 8.890410 TTGTACTAACTAATACTCCCTCTGTT 57.110 34.615 0.00 0.00 0.00 3.16
397 399 8.890410 TTTGTACTAACTAATACTCCCTCTGT 57.110 34.615 0.00 0.00 0.00 3.41
398 400 8.968969 ACTTTGTACTAACTAATACTCCCTCTG 58.031 37.037 0.00 0.00 0.00 3.35
399 401 9.544579 AACTTTGTACTAACTAATACTCCCTCT 57.455 33.333 0.00 0.00 0.00 3.69
432 434 6.313905 ACATACTCGCTCTGTCCAAAAATAAG 59.686 38.462 0.00 0.00 0.00 1.73
440 442 1.669265 CGTACATACTCGCTCTGTCCA 59.331 52.381 0.00 0.00 0.00 4.02
449 451 8.610855 TTTAGACAAGAATTCGTACATACTCG 57.389 34.615 0.00 0.00 0.00 4.18
716 718 9.023967 CAGCCAACAAAAATCTATTGTTATAGC 57.976 33.333 4.52 8.07 46.30 2.97
841 844 1.956869 TTTGGGCTGATGAGAGAGGA 58.043 50.000 0.00 0.00 0.00 3.71
906 909 5.522315 TTTATGTCCCAGTTGGTAATGGA 57.478 39.130 0.00 0.00 39.02 3.41
936 939 3.758023 CTGTGTGGGCATCTTTATGTCAA 59.242 43.478 0.00 0.00 39.62 3.18
953 956 8.918202 TTTCATGTTAGTTAAGGATTCTGTGT 57.082 30.769 0.00 0.00 0.00 3.72
984 987 3.398967 TGGGCATTCTGGCTATTAAGGAT 59.601 43.478 0.55 0.00 43.20 3.24
1047 1050 2.896685 AGATTCCTCGATCTGGTCATCC 59.103 50.000 0.00 0.00 35.13 3.51
1056 1059 0.038709 CGGGAGCAGATTCCTCGATC 60.039 60.000 0.00 0.00 37.40 3.69
1109 1112 3.488423 CTCTGTTGGCAGGGGAGT 58.512 61.111 0.00 0.00 42.78 3.85
1143 1146 2.833338 ACCACCATCAAACCAATCCATG 59.167 45.455 0.00 0.00 0.00 3.66
1195 1198 5.825650 GCGTCATAAGCATCTCGAACAGAG 61.826 50.000 0.00 0.00 40.30 3.35
1285 1288 0.326618 TCTTCCTCCTCCCCCACATC 60.327 60.000 0.00 0.00 0.00 3.06
1344 1347 3.326006 GGCTATCATCACCCTCTTCATCA 59.674 47.826 0.00 0.00 0.00 3.07
1362 1365 3.449227 CCCTGCGACGACTGGCTA 61.449 66.667 0.00 0.00 0.00 3.93
1373 1376 3.664025 TTGCCATCGTCTCCCTGCG 62.664 63.158 0.00 0.00 0.00 5.18
1418 1421 3.914426 TGTGAAGGAGGAAATAGAGGC 57.086 47.619 0.00 0.00 0.00 4.70
1447 1450 1.021390 AGAAAGCAACGGAGGCGATG 61.021 55.000 0.00 0.00 36.08 3.84
1467 1470 1.812571 ACGGCAACAGGAAATCATGAC 59.187 47.619 0.00 0.00 0.00 3.06
1477 1480 3.403057 CGACGTGACGGCAACAGG 61.403 66.667 12.83 0.00 32.52 4.00
1496 1499 0.572590 CGAAGCTAGCGTACATGTGC 59.427 55.000 9.11 6.17 0.00 4.57
1507 1510 0.676736 GGATCCTGGACCGAAGCTAG 59.323 60.000 3.84 0.00 0.00 3.42
1520 1523 1.142870 CTCTCCTCTCGACTGGATCCT 59.857 57.143 14.23 0.00 0.00 3.24
1523 1526 0.467290 GGCTCTCCTCTCGACTGGAT 60.467 60.000 2.52 0.00 0.00 3.41
1566 1569 2.823829 GATGATGCGTTCACCGGCC 61.824 63.158 0.00 0.00 37.11 6.13
1574 1577 3.612479 GCCAGAACAAAAGATGATGCGTT 60.612 43.478 0.00 0.00 0.00 4.84
1575 1578 2.095059 GCCAGAACAAAAGATGATGCGT 60.095 45.455 0.00 0.00 0.00 5.24
1576 1579 2.163010 AGCCAGAACAAAAGATGATGCG 59.837 45.455 0.00 0.00 0.00 4.73
1577 1580 3.442977 AGAGCCAGAACAAAAGATGATGC 59.557 43.478 0.00 0.00 0.00 3.91
1578 1581 5.640189 AAGAGCCAGAACAAAAGATGATG 57.360 39.130 0.00 0.00 0.00 3.07
1579 1582 5.566230 GCAAAGAGCCAGAACAAAAGATGAT 60.566 40.000 0.00 0.00 37.23 2.45
1580 1583 4.261741 GCAAAGAGCCAGAACAAAAGATGA 60.262 41.667 0.00 0.00 37.23 2.92
1581 1584 3.985925 GCAAAGAGCCAGAACAAAAGATG 59.014 43.478 0.00 0.00 37.23 2.90
1582 1585 4.248691 GCAAAGAGCCAGAACAAAAGAT 57.751 40.909 0.00 0.00 37.23 2.40
1583 1586 3.715628 GCAAAGAGCCAGAACAAAAGA 57.284 42.857 0.00 0.00 37.23 2.52
1595 1598 0.392193 TCAGGCTAGCAGCAAAGAGC 60.392 55.000 18.24 0.00 44.75 4.09
1596 1599 1.367659 GTCAGGCTAGCAGCAAAGAG 58.632 55.000 18.24 0.00 44.75 2.85
1597 1600 0.036010 GGTCAGGCTAGCAGCAAAGA 60.036 55.000 18.24 1.58 44.75 2.52
1598 1601 0.035630 AGGTCAGGCTAGCAGCAAAG 60.036 55.000 18.24 0.00 44.75 2.77
1599 1602 0.036010 GAGGTCAGGCTAGCAGCAAA 60.036 55.000 18.24 0.00 44.75 3.68
1600 1603 0.906756 AGAGGTCAGGCTAGCAGCAA 60.907 55.000 18.24 0.00 44.75 3.91
1601 1604 0.906756 AAGAGGTCAGGCTAGCAGCA 60.907 55.000 18.24 0.00 44.75 4.41
1602 1605 0.461693 CAAGAGGTCAGGCTAGCAGC 60.462 60.000 18.24 5.80 41.46 5.25
1603 1606 0.461693 GCAAGAGGTCAGGCTAGCAG 60.462 60.000 18.24 8.63 0.00 4.24
1604 1607 1.599047 GCAAGAGGTCAGGCTAGCA 59.401 57.895 18.24 0.00 0.00 3.49
1605 1608 1.153269 GGCAAGAGGTCAGGCTAGC 60.153 63.158 6.04 6.04 0.00 3.42
1606 1609 1.781786 TAGGCAAGAGGTCAGGCTAG 58.218 55.000 0.00 0.00 39.11 3.42
1607 1610 1.781786 CTAGGCAAGAGGTCAGGCTA 58.218 55.000 0.00 0.00 39.11 3.93
1608 1611 1.621672 GCTAGGCAAGAGGTCAGGCT 61.622 60.000 0.00 0.00 41.38 4.58
1609 1612 1.153269 GCTAGGCAAGAGGTCAGGC 60.153 63.158 0.00 0.00 0.00 4.85
1610 1613 0.615331 TTGCTAGGCAAGAGGTCAGG 59.385 55.000 0.51 0.00 43.99 3.86
1616 1619 7.602719 TGGTAAGACCATTGCTAGGCAAGAG 62.603 48.000 10.62 6.87 44.79 2.85
1617 1620 5.852763 TGGTAAGACCATTGCTAGGCAAGA 61.853 45.833 10.62 0.00 44.79 3.02
1618 1621 3.622206 TGGTAAGACCATTGCTAGGCAAG 60.622 47.826 10.62 1.31 44.79 4.01
1619 1622 2.307392 TGGTAAGACCATTGCTAGGCAA 59.693 45.455 7.40 7.40 44.79 4.52
1620 1623 1.912731 TGGTAAGACCATTGCTAGGCA 59.087 47.619 0.00 0.00 44.79 4.75
1621 1624 2.710096 TGGTAAGACCATTGCTAGGC 57.290 50.000 0.00 0.00 44.79 3.93
1630 1633 1.912731 TGCCTAAGCATGGTAAGACCA 59.087 47.619 0.00 0.00 45.62 4.02
1631 1634 2.710096 TGCCTAAGCATGGTAAGACC 57.290 50.000 0.00 0.00 46.52 3.85
1641 1644 1.496444 TCCACATGGGTGCCTAAGCA 61.496 55.000 0.00 0.00 43.88 3.91
1642 1645 1.032114 GTCCACATGGGTGCCTAAGC 61.032 60.000 0.00 0.00 43.88 3.09
1643 1646 0.620556 AGTCCACATGGGTGCCTAAG 59.379 55.000 0.00 0.00 43.88 2.18
1644 1647 0.618458 GAGTCCACATGGGTGCCTAA 59.382 55.000 0.00 0.00 43.88 2.69
1645 1648 1.271840 GGAGTCCACATGGGTGCCTA 61.272 60.000 3.60 0.00 43.88 3.93
1646 1649 2.606587 GGAGTCCACATGGGTGCCT 61.607 63.158 3.60 0.00 43.88 4.75
1647 1650 2.044946 GGAGTCCACATGGGTGCC 60.045 66.667 3.60 0.00 43.88 5.01
1648 1651 1.271840 TAGGGAGTCCACATGGGTGC 61.272 60.000 12.30 0.00 43.88 5.01
1649 1652 0.833287 CTAGGGAGTCCACATGGGTG 59.167 60.000 12.30 0.00 44.85 4.61
1650 1653 0.983378 GCTAGGGAGTCCACATGGGT 60.983 60.000 12.30 0.00 38.11 4.51
1651 1654 1.700042 GGCTAGGGAGTCCACATGGG 61.700 65.000 12.30 0.00 35.41 4.00
1652 1655 0.982852 TGGCTAGGGAGTCCACATGG 60.983 60.000 12.30 0.00 34.83 3.66
1653 1656 0.467384 CTGGCTAGGGAGTCCACATG 59.533 60.000 12.30 0.00 34.83 3.21
1702 1705 4.613167 GCAGTCTTCACAGAAGCATTTGAG 60.613 45.833 1.96 0.00 34.13 3.02
1764 1767 4.641989 GTGTTTCCAATCACCATCAGCTAT 59.358 41.667 0.00 0.00 0.00 2.97
1781 1784 3.186613 GTGGTGAATCTTCCTCGTGTTTC 59.813 47.826 0.00 0.00 0.00 2.78
1790 1793 1.202879 TGTGTGGGTGGTGAATCTTCC 60.203 52.381 0.00 0.00 0.00 3.46
1797 1800 0.179032 GTCATGTGTGTGGGTGGTGA 60.179 55.000 0.00 0.00 0.00 4.02
1835 1838 1.202382 ACTAATGTTCCGCTCCTACGC 60.202 52.381 0.00 0.00 0.00 4.42
1865 1868 4.472470 TCCACATCATCCTCTCAGTTTCAT 59.528 41.667 0.00 0.00 0.00 2.57
1879 1882 1.216175 CCCTCCATGGTTCCACATCAT 59.784 52.381 12.58 0.00 0.00 2.45
1891 1894 2.693864 ACCCTCTGCCCCTCCATG 60.694 66.667 0.00 0.00 0.00 3.66
2035 2038 7.812690 TTAACTTGTCTTTCTTTACTTCCCC 57.187 36.000 0.00 0.00 0.00 4.81
2073 2076 5.746721 GGTGAAAACACACATAAAGTTGGAC 59.253 40.000 0.00 0.00 41.88 4.02
2137 2140 7.352739 CGTTGCTATGTAATGGAATAAGAACC 58.647 38.462 0.00 0.00 0.00 3.62
2149 2152 3.370978 GTGTCTGTGCGTTGCTATGTAAT 59.629 43.478 0.00 0.00 0.00 1.89
2167 2170 3.542648 GCCCTTGGACTAATTAGGTGTC 58.457 50.000 16.73 6.17 0.00 3.67
2200 2203 7.668886 CCTATTCCTGCATTTTGAGAATCCTAT 59.331 37.037 0.00 0.00 0.00 2.57
2207 2210 5.415701 GTCAACCTATTCCTGCATTTTGAGA 59.584 40.000 0.00 0.00 0.00 3.27
2246 2249 8.607459 GTCGAACATTCTCTCAAATCATGTAAT 58.393 33.333 0.00 0.00 0.00 1.89
2247 2250 7.602265 TGTCGAACATTCTCTCAAATCATGTAA 59.398 33.333 0.00 0.00 0.00 2.41
2269 2272 1.581934 TTGTGTTTCCTGCTCTGTCG 58.418 50.000 0.00 0.00 0.00 4.35
2275 2278 5.184892 AGGATATCTTTGTGTTTCCTGCT 57.815 39.130 2.05 0.00 32.48 4.24
2284 2287 7.596749 AACGTCTTTGTAGGATATCTTTGTG 57.403 36.000 2.05 0.00 0.00 3.33
2292 2295 5.244402 TCCACTCAAACGTCTTTGTAGGATA 59.756 40.000 0.00 0.00 38.38 2.59
2305 2308 6.215845 AGGAAAATTTTCATCCACTCAAACG 58.784 36.000 27.53 0.00 38.92 3.60
2375 4536 3.495434 TGTTTGGTTCGTAGGATTGGT 57.505 42.857 0.00 0.00 0.00 3.67
2608 4859 1.234615 CGCCAACAATTCCACTCGGT 61.235 55.000 0.00 0.00 0.00 4.69
2611 4862 2.793278 AAACGCCAACAATTCCACTC 57.207 45.000 0.00 0.00 0.00 3.51
2639 4895 9.561069 ACACTTTTATATATTTGGGCTGTAGAG 57.439 33.333 0.00 0.00 0.00 2.43
2662 4918 5.920273 CCAAACATCACCAATTGTTAGACAC 59.080 40.000 4.43 0.00 35.09 3.67
2801 5061 1.931841 TCGAAGACGAGACGATACTGG 59.068 52.381 0.00 0.00 43.81 4.00
3477 5751 2.791170 GCAGAGCCAGGGATTCTTG 58.209 57.895 0.00 0.00 0.00 3.02
3605 5879 9.081204 AGGATACATAAATAGCATGCAAATCAA 57.919 29.630 21.98 5.26 41.41 2.57
3658 5932 1.335872 CCCAATTCCAACTTGACGTGC 60.336 52.381 0.00 0.00 0.00 5.34
3711 5985 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
3712 5986 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
3713 5987 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
3714 5988 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
3715 5989 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
3716 5990 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
3717 5991 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
3718 5992 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
3719 5993 7.094762 ACGAATCTAAGACAAGAATTTTGGGAC 60.095 37.037 0.00 0.00 0.00 4.46
3720 5994 6.940298 ACGAATCTAAGACAAGAATTTTGGGA 59.060 34.615 0.00 0.00 0.00 4.37
3721 5995 7.119846 AGACGAATCTAAGACAAGAATTTTGGG 59.880 37.037 0.00 0.00 31.46 4.12
3722 5996 8.034058 AGACGAATCTAAGACAAGAATTTTGG 57.966 34.615 0.00 0.00 31.46 3.28
3728 6002 8.549548 CGTATCTAGACGAATCTAAGACAAGAA 58.450 37.037 0.00 0.00 45.82 2.52
3729 6003 8.074474 CGTATCTAGACGAATCTAAGACAAGA 57.926 38.462 0.00 0.00 45.82 3.02
3766 6040 9.647797 ACGAATGTATCAAGTCATGTTTTAGTA 57.352 29.630 0.00 0.00 0.00 1.82
3767 6041 8.547967 ACGAATGTATCAAGTCATGTTTTAGT 57.452 30.769 0.00 0.00 0.00 2.24
3776 6050 9.863845 TTGTCTAAATACGAATGTATCAAGTCA 57.136 29.630 0.00 0.00 40.42 3.41
3802 6076 9.784531 TCTGTCTCAAAATTCTTGTCTTAGATT 57.215 29.630 0.00 0.00 0.00 2.40
3803 6077 9.434420 CTCTGTCTCAAAATTCTTGTCTTAGAT 57.566 33.333 0.00 0.00 0.00 1.98
3804 6078 7.875041 CCTCTGTCTCAAAATTCTTGTCTTAGA 59.125 37.037 0.00 0.00 0.00 2.10
3805 6079 7.118971 CCCTCTGTCTCAAAATTCTTGTCTTAG 59.881 40.741 0.00 0.00 0.00 2.18
3806 6080 6.936900 CCCTCTGTCTCAAAATTCTTGTCTTA 59.063 38.462 0.00 0.00 0.00 2.10
3807 6081 5.767168 CCCTCTGTCTCAAAATTCTTGTCTT 59.233 40.000 0.00 0.00 0.00 3.01
3808 6082 5.072329 TCCCTCTGTCTCAAAATTCTTGTCT 59.928 40.000 0.00 0.00 0.00 3.41
3809 6083 5.308825 TCCCTCTGTCTCAAAATTCTTGTC 58.691 41.667 0.00 0.00 0.00 3.18
3810 6084 5.163152 ACTCCCTCTGTCTCAAAATTCTTGT 60.163 40.000 0.00 0.00 0.00 3.16
3811 6085 5.312079 ACTCCCTCTGTCTCAAAATTCTTG 58.688 41.667 0.00 0.00 0.00 3.02
3812 6086 5.574970 ACTCCCTCTGTCTCAAAATTCTT 57.425 39.130 0.00 0.00 0.00 2.52
3813 6087 5.782845 ACTACTCCCTCTGTCTCAAAATTCT 59.217 40.000 0.00 0.00 0.00 2.40
3814 6088 6.043854 ACTACTCCCTCTGTCTCAAAATTC 57.956 41.667 0.00 0.00 0.00 2.17
3815 6089 7.741554 ATACTACTCCCTCTGTCTCAAAATT 57.258 36.000 0.00 0.00 0.00 1.82
3817 6091 9.931698 TTATATACTACTCCCTCTGTCTCAAAA 57.068 33.333 0.00 0.00 0.00 2.44
3875 6149 7.718753 TGTGGAATTGCAGAACCAAATTAATTT 59.281 29.630 7.64 7.64 34.11 1.82
3881 6155 4.686191 TTGTGGAATTGCAGAACCAAAT 57.314 36.364 5.38 0.00 34.11 2.32
3955 6229 3.077359 GGGGTCTGTTTCAATGTCAGAG 58.923 50.000 0.00 0.00 38.60 3.35
4028 9591 0.675633 CCAGGTTCCAAAGCCAACAG 59.324 55.000 0.00 0.00 0.00 3.16
4037 9600 8.434589 AATCTGATTTTATTTCCAGGTTCCAA 57.565 30.769 0.00 0.00 0.00 3.53
4210 9778 1.888018 CCCGTAGAAAGCTCGTCCA 59.112 57.895 0.00 0.00 0.00 4.02
4226 9794 2.222027 GTGATACATAACTGCAGGCCC 58.778 52.381 19.93 0.00 0.00 5.80
4236 9804 5.476091 TGTCCAGTGTGTGTGATACATAA 57.524 39.130 0.00 0.00 42.24 1.90
4302 9870 8.576442 TCACCTTCCAGTTTTCTAATCAATTTC 58.424 33.333 0.00 0.00 0.00 2.17
4327 9895 9.552114 CTCTGATAAGACATGTGTTCAAATTTC 57.448 33.333 12.09 2.46 0.00 2.17
4331 9899 8.559536 GTTTCTCTGATAAGACATGTGTTCAAA 58.440 33.333 12.09 0.00 0.00 2.69
4342 9910 2.605366 GCGCAGGTTTCTCTGATAAGAC 59.395 50.000 0.30 0.00 36.93 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.