Multiple sequence alignment - TraesCS3B01G569600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G569600 chr3B 100.000 3487 0 0 1 3487 801188152 801191638 0.000000e+00 6440.0
1 TraesCS3B01G569600 chr3B 94.380 1815 65 12 639 2442 803042362 803044150 0.000000e+00 2752.0
2 TraesCS3B01G569600 chr3B 93.803 710 19 6 2792 3487 803044642 803045340 0.000000e+00 1044.0
3 TraesCS3B01G569600 chr3B 93.074 231 16 0 2435 2665 803044410 803044640 4.310000e-89 339.0
4 TraesCS3B01G569600 chr3B 90.421 261 12 3 274 528 803042116 803042369 7.210000e-87 331.0
5 TraesCS3B01G569600 chr3B 88.278 273 18 4 1 273 803041699 803041957 7.270000e-82 315.0
6 TraesCS3B01G569600 chr3B 92.800 125 4 5 527 648 52884934 52884812 3.580000e-40 176.0
7 TraesCS3B01G569600 chr3B 89.474 114 9 3 529 639 220756788 220756675 1.300000e-29 141.0
8 TraesCS3B01G569600 chr3B 89.286 112 8 4 529 637 219442289 219442179 1.690000e-28 137.0
9 TraesCS3B01G569600 chr3D 90.939 1512 81 32 2003 3487 596853868 596852386 0.000000e+00 1982.0
10 TraesCS3B01G569600 chr3D 94.010 1202 63 5 799 2000 596865005 596863813 0.000000e+00 1812.0
11 TraesCS3B01G569600 chr3D 89.904 208 21 0 66 273 577210606 577210813 5.740000e-68 268.0
12 TraesCS3B01G569600 chr3D 89.474 209 20 1 65 273 40757507 40757301 2.670000e-66 263.0
13 TraesCS3B01G569600 chr6D 90.909 209 19 0 65 273 345293437 345293229 7.370000e-72 281.0
14 TraesCS3B01G569600 chr6D 84.127 189 9 7 279 446 90927437 90927625 2.780000e-36 163.0
15 TraesCS3B01G569600 chr6D 82.609 184 12 11 282 446 456338484 456338302 1.010000e-30 145.0
16 TraesCS3B01G569600 chr6D 82.114 123 14 6 3048 3167 459239216 459239333 7.970000e-17 99.0
17 TraesCS3B01G569600 chr2A 90.909 209 19 0 65 273 376112512 376112304 7.370000e-72 281.0
18 TraesCS3B01G569600 chr2A 88.995 209 23 0 65 273 768446591 768446383 3.450000e-65 259.0
19 TraesCS3B01G569600 chr1D 90.521 211 17 2 65 273 7063667 7063458 3.430000e-70 276.0
20 TraesCS3B01G569600 chr1D 84.791 263 36 2 15 273 390426149 390425887 9.600000e-66 261.0
21 TraesCS3B01G569600 chr1D 81.771 192 14 9 276 446 41444914 41445105 1.300000e-29 141.0
22 TraesCS3B01G569600 chr4D 90.047 211 20 1 63 273 477228282 477228073 4.430000e-69 272.0
23 TraesCS3B01G569600 chr2D 85.227 176 14 9 279 449 567673543 567673711 1.660000e-38 171.0
24 TraesCS3B01G569600 chr2D 84.181 177 8 8 276 449 536206954 536207113 1.680000e-33 154.0
25 TraesCS3B01G569600 chr7D 84.971 173 15 4 279 450 623362135 623361973 7.740000e-37 165.0
26 TraesCS3B01G569600 chr5D 84.000 175 18 8 279 448 69408523 69408354 3.600000e-35 159.0
27 TraesCS3B01G569600 chr7B 83.422 187 11 4 282 448 3022332 3022146 4.660000e-34 156.0
28 TraesCS3B01G569600 chr7B 83.246 191 10 9 279 449 128340373 128340185 4.660000e-34 156.0
29 TraesCS3B01G569600 chr4A 92.035 113 6 3 529 638 714057573 714057461 4.660000e-34 156.0
30 TraesCS3B01G569600 chr4A 80.729 192 15 6 279 450 511076462 511076651 2.820000e-26 130.0
31 TraesCS3B01G569600 chr1B 91.964 112 7 2 529 638 180813398 180813287 4.660000e-34 156.0
32 TraesCS3B01G569600 chr1B 100.000 29 0 0 1346 1374 679623596 679623568 2.000000e-03 54.7
33 TraesCS3B01G569600 chr6B 93.396 106 4 3 535 637 1900645 1900750 1.680000e-33 154.0
34 TraesCS3B01G569600 chr6B 92.523 107 4 4 535 637 1904068 1904174 2.170000e-32 150.0
35 TraesCS3B01G569600 chr6B 81.982 111 14 5 3060 3167 698961256 698961363 4.790000e-14 89.8
36 TraesCS3B01G569600 chrUn 92.453 106 5 3 535 637 378646691 378646796 7.800000e-32 148.0
37 TraesCS3B01G569600 chr5A 82.011 189 13 12 281 449 52414161 52414348 1.300000e-29 141.0
38 TraesCS3B01G569600 chr1A 81.915 188 13 9 282 448 10952516 10952703 4.690000e-29 139.0
39 TraesCS3B01G569600 chr1A 85.000 60 7 2 1345 1402 586296846 586296787 3.760000e-05 60.2
40 TraesCS3B01G569600 chr2B 89.815 108 6 5 531 633 787813114 787813007 2.180000e-27 134.0
41 TraesCS3B01G569600 chr2B 84.252 127 18 2 1028 1153 76073347 76073472 4.730000e-24 122.0
42 TraesCS3B01G569600 chr2B 91.209 91 7 1 360 449 798665352 798665262 4.730000e-24 122.0
43 TraesCS3B01G569600 chr2B 89.247 93 5 3 360 449 111306355 111306445 1.020000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G569600 chr3B 801188152 801191638 3486 False 6440.0 6440 100.0000 1 3487 1 chr3B.!!$F1 3486
1 TraesCS3B01G569600 chr3B 803041699 803045340 3641 False 956.2 2752 91.9912 1 3487 5 chr3B.!!$F2 3486
2 TraesCS3B01G569600 chr3D 596852386 596853868 1482 True 1982.0 1982 90.9390 2003 3487 1 chr3D.!!$R2 1484
3 TraesCS3B01G569600 chr3D 596863813 596865005 1192 True 1812.0 1812 94.0100 799 2000 1 chr3D.!!$R3 1201

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
588 753 0.038526 CATATACCCCCGTCGCTGTC 60.039 60.0 0.0 0.0 0.00 3.51 F
598 763 0.109551 CGTCGCTGTCTCTGACATGT 60.110 55.0 0.0 0.0 41.94 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2452 2897 0.119358 AGGAAGCTCCCCTAACCAGT 59.881 55.0 5.87 0.0 37.19 4.00 R
2595 3040 2.868583 CAAACCAGAGATAGGCATGTCG 59.131 50.0 0.00 0.0 29.82 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 4.058124 GCATCTCCAACAATCGTGCTATA 58.942 43.478 0.00 0.00 0.00 1.31
64 65 0.525455 GCCGCGCTGAAAAATAAGGG 60.525 55.000 5.56 0.00 0.00 3.95
65 66 0.525455 CCGCGCTGAAAAATAAGGGC 60.525 55.000 5.56 1.98 45.89 5.19
66 67 0.451783 CGCGCTGAAAAATAAGGGCT 59.548 50.000 5.56 0.00 46.83 5.19
67 68 1.531883 CGCGCTGAAAAATAAGGGCTC 60.532 52.381 5.56 0.00 46.83 4.70
68 69 1.745653 GCGCTGAAAAATAAGGGCTCT 59.254 47.619 0.00 0.00 45.88 4.09
69 70 2.943033 GCGCTGAAAAATAAGGGCTCTA 59.057 45.455 0.00 0.00 45.88 2.43
70 71 3.002759 GCGCTGAAAAATAAGGGCTCTAG 59.997 47.826 0.00 0.00 45.88 2.43
71 72 3.002759 CGCTGAAAAATAAGGGCTCTAGC 59.997 47.826 0.00 0.00 41.14 3.42
72 73 3.002759 GCTGAAAAATAAGGGCTCTAGCG 59.997 47.826 0.00 0.00 43.26 4.26
73 74 4.442706 CTGAAAAATAAGGGCTCTAGCGA 58.557 43.478 0.00 0.00 43.26 4.93
74 75 4.839121 TGAAAAATAAGGGCTCTAGCGAA 58.161 39.130 0.00 0.00 43.26 4.70
75 76 4.876107 TGAAAAATAAGGGCTCTAGCGAAG 59.124 41.667 0.00 0.00 43.26 3.79
76 77 3.477210 AAATAAGGGCTCTAGCGAAGG 57.523 47.619 0.00 0.00 43.26 3.46
205 206 2.983592 CGCAACTCCACCAACCCC 60.984 66.667 0.00 0.00 0.00 4.95
215 216 1.928567 ACCAACCCCATCCATCCGT 60.929 57.895 0.00 0.00 0.00 4.69
301 460 4.385146 TGAAATGCATATGTTGTTTGTGCG 59.615 37.500 0.00 0.00 38.58 5.34
308 467 2.017138 TGTTGTTTGTGCGAGAGTCA 57.983 45.000 0.00 0.00 0.00 3.41
334 493 3.107661 GCATTTTTGCGCGCTGCT 61.108 55.556 33.29 9.52 46.63 4.24
335 494 2.767059 CATTTTTGCGCGCTGCTG 59.233 55.556 33.29 17.58 46.63 4.41
336 495 2.431260 ATTTTTGCGCGCTGCTGG 60.431 55.556 33.29 0.43 46.63 4.85
337 496 2.918345 ATTTTTGCGCGCTGCTGGA 61.918 52.632 33.29 13.45 46.63 3.86
338 497 2.419057 ATTTTTGCGCGCTGCTGGAA 62.419 50.000 33.29 14.36 46.63 3.53
339 498 2.419057 TTTTTGCGCGCTGCTGGAAT 62.419 50.000 33.29 0.00 46.63 3.01
340 499 2.419057 TTTTGCGCGCTGCTGGAATT 62.419 50.000 33.29 0.00 46.63 2.17
415 575 1.465187 GGCAAAGTAGTTTTAGCGCGG 60.465 52.381 8.83 0.00 0.00 6.46
416 576 1.878373 CAAAGTAGTTTTAGCGCGGC 58.122 50.000 8.83 0.00 0.00 6.53
500 665 3.302365 GCAAGTGCAAGCAATTTAGGA 57.698 42.857 4.87 0.00 41.59 2.94
522 687 6.094603 AGGATGCAGTCATTCAGTTTTGTATC 59.905 38.462 0.00 0.00 30.25 2.24
528 693 3.616821 TCATTCAGTTTTGTATCGAGGCG 59.383 43.478 0.00 0.00 0.00 5.52
529 694 2.004583 TCAGTTTTGTATCGAGGCGG 57.995 50.000 0.00 0.00 0.00 6.13
530 695 1.006832 CAGTTTTGTATCGAGGCGGG 58.993 55.000 0.00 0.00 0.00 6.13
531 696 0.899720 AGTTTTGTATCGAGGCGGGA 59.100 50.000 0.00 0.00 0.00 5.14
532 697 1.485066 AGTTTTGTATCGAGGCGGGAT 59.515 47.619 0.00 0.00 0.00 3.85
533 698 2.696707 AGTTTTGTATCGAGGCGGGATA 59.303 45.455 0.00 0.00 0.00 2.59
534 699 3.133362 AGTTTTGTATCGAGGCGGGATAA 59.867 43.478 0.00 0.00 0.00 1.75
535 700 4.062991 GTTTTGTATCGAGGCGGGATAAT 58.937 43.478 0.00 0.00 0.00 1.28
536 701 4.345859 TTTGTATCGAGGCGGGATAATT 57.654 40.909 0.00 0.00 0.00 1.40
537 702 3.313012 TGTATCGAGGCGGGATAATTG 57.687 47.619 0.00 0.00 0.00 2.32
538 703 2.894765 TGTATCGAGGCGGGATAATTGA 59.105 45.455 0.00 0.00 0.00 2.57
539 704 3.322541 TGTATCGAGGCGGGATAATTGAA 59.677 43.478 0.00 0.00 0.00 2.69
540 705 2.526304 TCGAGGCGGGATAATTGAAG 57.474 50.000 0.00 0.00 0.00 3.02
541 706 2.036387 TCGAGGCGGGATAATTGAAGA 58.964 47.619 0.00 0.00 0.00 2.87
542 707 2.632996 TCGAGGCGGGATAATTGAAGAT 59.367 45.455 0.00 0.00 0.00 2.40
543 708 3.830178 TCGAGGCGGGATAATTGAAGATA 59.170 43.478 0.00 0.00 0.00 1.98
544 709 4.282449 TCGAGGCGGGATAATTGAAGATAA 59.718 41.667 0.00 0.00 0.00 1.75
545 710 5.046591 TCGAGGCGGGATAATTGAAGATAAT 60.047 40.000 0.00 0.00 0.00 1.28
546 711 5.292101 CGAGGCGGGATAATTGAAGATAATC 59.708 44.000 0.00 0.00 0.00 1.75
547 712 5.501156 AGGCGGGATAATTGAAGATAATCC 58.499 41.667 0.00 0.00 36.23 3.01
552 717 7.709149 GGGATAATTGAAGATAATCCCCTTG 57.291 40.000 8.49 0.00 46.88 3.61
553 718 7.241628 GGGATAATTGAAGATAATCCCCTTGT 58.758 38.462 8.49 0.00 46.88 3.16
554 719 7.730332 GGGATAATTGAAGATAATCCCCTTGTT 59.270 37.037 8.49 0.00 46.88 2.83
555 720 8.797438 GGATAATTGAAGATAATCCCCTTGTTC 58.203 37.037 0.00 0.00 31.71 3.18
556 721 6.699575 AATTGAAGATAATCCCCTTGTTCG 57.300 37.500 0.00 0.00 0.00 3.95
557 722 3.541632 TGAAGATAATCCCCTTGTTCGC 58.458 45.455 0.00 0.00 0.00 4.70
558 723 3.054728 TGAAGATAATCCCCTTGTTCGCA 60.055 43.478 0.00 0.00 0.00 5.10
559 724 3.644966 AGATAATCCCCTTGTTCGCAA 57.355 42.857 0.00 0.00 35.53 4.85
560 725 3.963129 AGATAATCCCCTTGTTCGCAAA 58.037 40.909 0.00 0.00 36.56 3.68
561 726 4.536765 AGATAATCCCCTTGTTCGCAAAT 58.463 39.130 0.00 0.00 36.56 2.32
562 727 4.580580 AGATAATCCCCTTGTTCGCAAATC 59.419 41.667 0.00 0.00 36.56 2.17
563 728 1.474330 ATCCCCTTGTTCGCAAATCC 58.526 50.000 0.00 0.00 36.56 3.01
564 729 0.404040 TCCCCTTGTTCGCAAATCCT 59.596 50.000 0.00 0.00 36.56 3.24
565 730 1.203001 TCCCCTTGTTCGCAAATCCTT 60.203 47.619 0.00 0.00 36.56 3.36
566 731 1.067635 CCCCTTGTTCGCAAATCCTTG 60.068 52.381 0.00 0.00 36.56 3.61
567 732 1.885887 CCCTTGTTCGCAAATCCTTGA 59.114 47.619 0.00 0.00 36.56 3.02
568 733 2.493278 CCCTTGTTCGCAAATCCTTGAT 59.507 45.455 0.00 0.00 36.56 2.57
569 734 3.428045 CCCTTGTTCGCAAATCCTTGATC 60.428 47.826 0.00 0.00 36.56 2.92
570 735 3.191162 CCTTGTTCGCAAATCCTTGATCA 59.809 43.478 0.00 0.00 36.56 2.92
571 736 4.142315 CCTTGTTCGCAAATCCTTGATCAT 60.142 41.667 0.00 0.00 36.56 2.45
572 737 5.066375 CCTTGTTCGCAAATCCTTGATCATA 59.934 40.000 0.00 0.00 36.56 2.15
573 738 6.238842 CCTTGTTCGCAAATCCTTGATCATAT 60.239 38.462 0.00 0.00 36.56 1.78
574 739 7.041167 CCTTGTTCGCAAATCCTTGATCATATA 60.041 37.037 0.00 0.00 36.56 0.86
575 740 7.189693 TGTTCGCAAATCCTTGATCATATAC 57.810 36.000 0.00 0.00 34.14 1.47
576 741 6.204688 TGTTCGCAAATCCTTGATCATATACC 59.795 38.462 0.00 0.00 34.14 2.73
577 742 5.245531 TCGCAAATCCTTGATCATATACCC 58.754 41.667 0.00 0.00 34.14 3.69
578 743 4.396166 CGCAAATCCTTGATCATATACCCC 59.604 45.833 0.00 0.00 34.14 4.95
579 744 4.706962 GCAAATCCTTGATCATATACCCCC 59.293 45.833 0.00 0.00 34.14 5.40
580 745 4.844349 AATCCTTGATCATATACCCCCG 57.156 45.455 0.00 0.00 0.00 5.73
581 746 3.269592 TCCTTGATCATATACCCCCGT 57.730 47.619 0.00 0.00 0.00 5.28
582 747 3.170717 TCCTTGATCATATACCCCCGTC 58.829 50.000 0.00 0.00 0.00 4.79
583 748 2.094182 CCTTGATCATATACCCCCGTCG 60.094 54.545 0.00 0.00 0.00 5.12
584 749 0.892755 TGATCATATACCCCCGTCGC 59.107 55.000 0.00 0.00 0.00 5.19
585 750 1.183549 GATCATATACCCCCGTCGCT 58.816 55.000 0.00 0.00 0.00 4.93
586 751 0.895530 ATCATATACCCCCGTCGCTG 59.104 55.000 0.00 0.00 0.00 5.18
587 752 0.468585 TCATATACCCCCGTCGCTGT 60.469 55.000 0.00 0.00 0.00 4.40
588 753 0.038526 CATATACCCCCGTCGCTGTC 60.039 60.000 0.00 0.00 0.00 3.51
589 754 0.178970 ATATACCCCCGTCGCTGTCT 60.179 55.000 0.00 0.00 0.00 3.41
590 755 0.820891 TATACCCCCGTCGCTGTCTC 60.821 60.000 0.00 0.00 0.00 3.36
591 756 2.569218 ATACCCCCGTCGCTGTCTCT 62.569 60.000 0.00 0.00 0.00 3.10
592 757 4.135153 CCCCCGTCGCTGTCTCTG 62.135 72.222 0.00 0.00 0.00 3.35
593 758 3.062466 CCCCGTCGCTGTCTCTGA 61.062 66.667 0.00 0.00 0.00 3.27
594 759 2.179517 CCCGTCGCTGTCTCTGAC 59.820 66.667 0.00 0.00 0.00 3.51
595 760 2.626780 CCCGTCGCTGTCTCTGACA 61.627 63.158 0.37 0.37 40.50 3.58
596 761 1.508545 CCGTCGCTGTCTCTGACAT 59.491 57.895 0.65 0.00 41.94 3.06
597 762 0.799917 CCGTCGCTGTCTCTGACATG 60.800 60.000 0.65 0.00 41.94 3.21
598 763 0.109551 CGTCGCTGTCTCTGACATGT 60.110 55.000 0.00 0.00 41.94 3.21
599 764 1.344458 GTCGCTGTCTCTGACATGTG 58.656 55.000 1.15 0.00 41.94 3.21
600 765 1.068264 GTCGCTGTCTCTGACATGTGA 60.068 52.381 1.15 0.00 41.94 3.58
601 766 1.200948 TCGCTGTCTCTGACATGTGAG 59.799 52.381 1.15 3.88 41.94 3.51
602 767 1.735038 CGCTGTCTCTGACATGTGAGG 60.735 57.143 12.62 3.67 41.94 3.86
603 768 1.274728 GCTGTCTCTGACATGTGAGGT 59.725 52.381 12.62 0.00 41.94 3.85
604 769 2.289320 GCTGTCTCTGACATGTGAGGTT 60.289 50.000 12.62 0.00 41.94 3.50
605 770 3.805108 GCTGTCTCTGACATGTGAGGTTT 60.805 47.826 12.62 0.00 41.94 3.27
606 771 4.561530 GCTGTCTCTGACATGTGAGGTTTA 60.562 45.833 12.62 0.00 41.94 2.01
607 772 5.541845 CTGTCTCTGACATGTGAGGTTTAA 58.458 41.667 12.62 0.00 41.94 1.52
608 773 5.541845 TGTCTCTGACATGTGAGGTTTAAG 58.458 41.667 12.62 2.22 37.67 1.85
609 774 5.070446 TGTCTCTGACATGTGAGGTTTAAGT 59.930 40.000 12.62 0.00 37.67 2.24
610 775 5.406780 GTCTCTGACATGTGAGGTTTAAGTG 59.593 44.000 12.62 0.00 32.09 3.16
611 776 4.641396 TCTGACATGTGAGGTTTAAGTGG 58.359 43.478 12.62 0.00 0.00 4.00
612 777 3.146066 TGACATGTGAGGTTTAAGTGGC 58.854 45.455 1.15 0.00 0.00 5.01
613 778 2.488153 GACATGTGAGGTTTAAGTGGCC 59.512 50.000 1.15 0.00 0.00 5.36
614 779 2.108250 ACATGTGAGGTTTAAGTGGCCT 59.892 45.455 3.32 0.00 34.93 5.19
615 780 2.270352 TGTGAGGTTTAAGTGGCCTG 57.730 50.000 3.32 0.00 31.89 4.85
616 781 1.202879 TGTGAGGTTTAAGTGGCCTGG 60.203 52.381 3.32 0.00 31.89 4.45
617 782 0.404040 TGAGGTTTAAGTGGCCTGGG 59.596 55.000 3.32 0.00 31.89 4.45
618 783 0.323451 GAGGTTTAAGTGGCCTGGGG 60.323 60.000 3.32 0.00 31.89 4.96
619 784 1.304962 GGTTTAAGTGGCCTGGGGG 60.305 63.158 3.32 0.00 0.00 5.40
636 801 2.945456 GGGGGTTACATCAAATCTCCC 58.055 52.381 0.00 0.00 0.00 4.30
637 802 2.572290 GGGGTTACATCAAATCTCCCG 58.428 52.381 0.00 0.00 34.78 5.14
638 803 2.171870 GGGGTTACATCAAATCTCCCGA 59.828 50.000 0.00 0.00 34.78 5.14
639 804 3.181443 GGGGTTACATCAAATCTCCCGAT 60.181 47.826 0.00 0.00 34.78 4.18
640 805 3.815401 GGGTTACATCAAATCTCCCGATG 59.185 47.826 0.00 0.00 41.84 3.84
641 806 3.815401 GGTTACATCAAATCTCCCGATGG 59.185 47.826 0.00 0.00 40.68 3.51
642 807 4.444306 GGTTACATCAAATCTCCCGATGGA 60.444 45.833 0.00 0.00 40.68 3.41
655 820 1.502163 CGATGGAGGCTCCGAATTGC 61.502 60.000 27.58 12.03 40.17 3.56
735 900 1.923227 GCTGTTAGCTTGAACGGGCC 61.923 60.000 9.68 0.00 38.45 5.80
736 901 0.321653 CTGTTAGCTTGAACGGGCCT 60.322 55.000 0.84 0.00 32.89 5.19
772 937 0.584876 CGACGTTGGAAAACAGGTCC 59.415 55.000 0.00 0.00 33.38 4.46
778 943 2.434774 GAAAACAGGTCCGGGGCT 59.565 61.111 0.00 0.00 0.00 5.19
779 944 1.674651 GAAAACAGGTCCGGGGCTC 60.675 63.158 0.00 0.00 0.00 4.70
780 945 2.125766 GAAAACAGGTCCGGGGCTCT 62.126 60.000 0.00 0.00 0.00 4.09
781 946 2.411765 AAAACAGGTCCGGGGCTCTG 62.412 60.000 13.43 13.43 0.00 3.35
791 956 3.661648 GGGCTCTGGGCTCCCAAA 61.662 66.667 9.23 0.00 46.63 3.28
792 957 2.685999 GGCTCTGGGCTCCCAAAT 59.314 61.111 9.23 0.00 46.63 2.32
793 958 1.755783 GGCTCTGGGCTCCCAAATG 60.756 63.158 9.23 3.52 46.63 2.32
915 1083 3.515286 CCGCCCTGCTGATTGCTG 61.515 66.667 0.00 0.00 43.37 4.41
916 1084 4.189188 CGCCCTGCTGATTGCTGC 62.189 66.667 0.00 0.00 43.37 5.25
917 1085 2.754658 GCCCTGCTGATTGCTGCT 60.755 61.111 0.00 0.00 43.37 4.24
918 1086 2.772691 GCCCTGCTGATTGCTGCTC 61.773 63.158 0.00 0.00 43.37 4.26
1164 1332 3.710722 CCTCTCAAGCTGGGCGGT 61.711 66.667 0.00 0.00 0.00 5.68
1337 1505 2.262774 AATGGCCTCCTCTTGCTCCG 62.263 60.000 3.32 0.00 0.00 4.63
1616 1788 2.514803 GACATTTTATCGGGATGGGGG 58.485 52.381 0.00 0.00 0.00 5.40
1659 1831 1.061546 TGGTTGGGGTAAGACTGGAC 58.938 55.000 0.00 0.00 0.00 4.02
1787 1959 7.734942 TGAGCACCATATGTATGTTATTCTGA 58.265 34.615 1.24 0.00 31.82 3.27
1835 2007 7.541783 TCCAATTTTTGTTCTTGCAGAATATCG 59.458 33.333 2.61 0.00 36.50 2.92
1969 2141 0.710567 GCATCAAGAGTCACGTCACG 59.289 55.000 0.00 0.00 0.00 4.35
2012 2184 4.202377 TGGTTCCTTAATGACCTGAACGAA 60.202 41.667 0.00 0.00 36.93 3.85
2068 2240 2.766263 TCCTGCCAAATCTCGACTATGT 59.234 45.455 0.00 0.00 0.00 2.29
2096 2271 4.019860 CCATATGGACCTTGGATCCTACAG 60.020 50.000 17.49 6.26 37.13 2.74
2240 2415 6.315144 CGGACAATGATAATGTACTTGAACCA 59.685 38.462 0.00 0.00 28.96 3.67
2249 2424 6.435292 AATGTACTTGAACCAGGAAGTAGT 57.565 37.500 0.00 0.00 35.76 2.73
2341 2519 4.305769 GACAGAGTGCTAGCCTATCATTG 58.694 47.826 13.29 5.60 0.00 2.82
2431 2609 1.003580 CTGGCATACACAGGTGGAAGT 59.996 52.381 4.24 0.00 34.19 3.01
2452 2897 3.830755 GTGTCTTTCCTGTACACTCCCTA 59.169 47.826 0.00 0.00 40.25 3.53
2519 2964 7.333174 GGTATCCTAGAAGATTAGAATGCTTGC 59.667 40.741 0.00 0.00 0.00 4.01
2595 3040 4.918588 TGTTCCCTGGGAAACTAAATCTC 58.081 43.478 29.09 13.93 43.86 2.75
2613 3062 1.959985 CTCGACATGCCTATCTCTGGT 59.040 52.381 0.00 0.00 0.00 4.00
2657 3106 3.755112 TGTTTTGATCGAGTACCACCA 57.245 42.857 0.00 0.00 0.00 4.17
2686 3135 1.838112 TTCCTGCATTGACCATGACC 58.162 50.000 0.00 0.00 34.31 4.02
2697 3146 0.038744 ACCATGACCAAGAGGGCTTG 59.961 55.000 0.00 0.00 46.30 4.01
2714 3163 2.479656 GCTTGTTGCTCTTGTCTCTCAG 59.520 50.000 0.00 0.00 38.95 3.35
2720 3169 1.066914 CTCTTGTCTCTCAGCGCAAC 58.933 55.000 11.47 0.00 0.00 4.17
2785 3238 2.932663 CGGAGCTTTTGAGCTTGGA 58.067 52.632 2.06 0.00 46.36 3.53
2908 3368 1.453015 TGGCTTGTTGTTCCTGCGT 60.453 52.632 0.00 0.00 0.00 5.24
2918 3378 5.933790 TGTTGTTCCTGCGTATTGTATTTC 58.066 37.500 0.00 0.00 0.00 2.17
2923 3383 4.385825 TCCTGCGTATTGTATTTCCCATC 58.614 43.478 0.00 0.00 0.00 3.51
2928 3388 6.734137 TGCGTATTGTATTTCCCATCAATTC 58.266 36.000 0.00 0.00 33.48 2.17
2983 3468 0.601046 CTGCACTTCTCTGCCGAACA 60.601 55.000 0.00 0.00 36.21 3.18
3127 3612 0.647410 CGACAACATGACTCCGATGC 59.353 55.000 0.00 0.00 0.00 3.91
3160 3645 4.333690 TGTCTCTACACTCTACCAGAACC 58.666 47.826 0.00 0.00 0.00 3.62
3162 3647 2.089980 TCTACACTCTACCAGAACCGC 58.910 52.381 0.00 0.00 0.00 5.68
3237 3723 6.381420 ACCACCCAGAGTATATATGCTGTATC 59.619 42.308 8.17 0.00 0.00 2.24
3372 3858 3.152400 GACGATGGCCCGGTAGGT 61.152 66.667 0.00 0.00 38.26 3.08
3395 3881 2.680339 GTGTTGAGAAGCTAATGGGCTC 59.320 50.000 0.00 0.00 42.24 4.70
3411 3897 2.482490 GGGCTCAAATGAATGGATGTGC 60.482 50.000 0.00 0.00 0.00 4.57
3412 3898 2.456989 GCTCAAATGAATGGATGTGCG 58.543 47.619 0.00 0.00 0.00 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 3.002759 GCTAGAGCCCTTATTTTTCAGCG 59.997 47.826 0.00 0.00 34.31 5.18
59 60 1.735376 CGCCTTCGCTAGAGCCCTTA 61.735 60.000 0.00 0.00 37.91 2.69
60 61 2.904131 GCCTTCGCTAGAGCCCTT 59.096 61.111 0.00 0.00 37.91 3.95
71 72 3.097114 GCGGTTTTTGCGCCTTCG 61.097 61.111 4.18 1.41 39.07 3.79
94 95 2.469826 CGCGTTGAACTAGATATGCCA 58.530 47.619 0.00 0.00 0.00 4.92
161 162 1.588403 CTCGAGAGTCCAGCGCATG 60.588 63.158 11.47 4.88 0.00 4.06
162 163 2.804167 CTCGAGAGTCCAGCGCAT 59.196 61.111 11.47 0.00 0.00 4.73
163 164 4.121669 GCTCGAGAGTCCAGCGCA 62.122 66.667 18.75 0.00 0.00 6.09
264 265 3.003480 GCATTTCATACTCGGATAGGCC 58.997 50.000 0.00 0.00 0.00 5.19
280 439 4.554292 TCGCACAAACAACATATGCATTT 58.446 34.783 3.54 0.00 36.02 2.32
308 467 3.098958 CAAAAATGCAGCGCGCGT 61.099 55.556 32.35 15.53 46.97 6.01
389 548 3.588891 AAACTACTTTGCCGCGCGC 62.589 57.895 27.36 23.91 38.31 6.86
396 555 1.878373 CCGCGCTAAAACTACTTTGC 58.122 50.000 5.56 0.00 0.00 3.68
500 665 5.643348 TCGATACAAAACTGAATGACTGCAT 59.357 36.000 0.00 0.00 35.92 3.96
522 687 2.526304 TCTTCAATTATCCCGCCTCG 57.474 50.000 0.00 0.00 0.00 4.63
529 694 8.712228 AACAAGGGGATTATCTTCAATTATCC 57.288 34.615 0.00 0.00 35.18 2.59
530 695 8.507249 CGAACAAGGGGATTATCTTCAATTATC 58.493 37.037 0.00 0.00 0.00 1.75
531 696 7.040409 GCGAACAAGGGGATTATCTTCAATTAT 60.040 37.037 0.00 0.00 0.00 1.28
532 697 6.262273 GCGAACAAGGGGATTATCTTCAATTA 59.738 38.462 0.00 0.00 0.00 1.40
533 698 5.067805 GCGAACAAGGGGATTATCTTCAATT 59.932 40.000 0.00 0.00 0.00 2.32
534 699 4.580580 GCGAACAAGGGGATTATCTTCAAT 59.419 41.667 0.00 0.00 0.00 2.57
535 700 3.945285 GCGAACAAGGGGATTATCTTCAA 59.055 43.478 0.00 0.00 0.00 2.69
536 701 3.054728 TGCGAACAAGGGGATTATCTTCA 60.055 43.478 0.00 0.00 0.00 3.02
537 702 3.541632 TGCGAACAAGGGGATTATCTTC 58.458 45.455 0.00 0.00 0.00 2.87
538 703 3.644966 TGCGAACAAGGGGATTATCTT 57.355 42.857 0.00 0.00 0.00 2.40
539 704 3.644966 TTGCGAACAAGGGGATTATCT 57.355 42.857 0.00 0.00 0.00 1.98
540 705 4.261614 GGATTTGCGAACAAGGGGATTATC 60.262 45.833 0.00 0.00 37.04 1.75
541 706 3.636764 GGATTTGCGAACAAGGGGATTAT 59.363 43.478 0.00 0.00 37.04 1.28
542 707 3.020984 GGATTTGCGAACAAGGGGATTA 58.979 45.455 0.00 0.00 37.04 1.75
543 708 1.824852 GGATTTGCGAACAAGGGGATT 59.175 47.619 0.00 0.00 37.04 3.01
544 709 1.005924 AGGATTTGCGAACAAGGGGAT 59.994 47.619 0.00 0.00 37.04 3.85
545 710 0.404040 AGGATTTGCGAACAAGGGGA 59.596 50.000 0.00 0.00 37.04 4.81
546 711 1.067635 CAAGGATTTGCGAACAAGGGG 60.068 52.381 0.00 0.00 37.04 4.79
547 712 1.885887 TCAAGGATTTGCGAACAAGGG 59.114 47.619 0.00 0.00 37.04 3.95
548 713 3.191162 TGATCAAGGATTTGCGAACAAGG 59.809 43.478 0.00 0.00 37.04 3.61
549 714 4.424061 TGATCAAGGATTTGCGAACAAG 57.576 40.909 0.00 0.00 37.04 3.16
550 715 6.698008 ATATGATCAAGGATTTGCGAACAA 57.302 33.333 0.00 0.00 34.21 2.83
551 716 6.204688 GGTATATGATCAAGGATTTGCGAACA 59.795 38.462 0.00 0.00 34.21 3.18
552 717 6.348540 GGGTATATGATCAAGGATTTGCGAAC 60.349 42.308 0.00 0.00 34.21 3.95
553 718 5.705441 GGGTATATGATCAAGGATTTGCGAA 59.295 40.000 0.00 0.00 34.21 4.70
554 719 5.245531 GGGTATATGATCAAGGATTTGCGA 58.754 41.667 0.00 0.00 34.21 5.10
555 720 4.396166 GGGGTATATGATCAAGGATTTGCG 59.604 45.833 0.00 0.00 34.21 4.85
556 721 4.706962 GGGGGTATATGATCAAGGATTTGC 59.293 45.833 0.00 0.00 34.21 3.68
557 722 4.943705 CGGGGGTATATGATCAAGGATTTG 59.056 45.833 0.00 0.00 35.57 2.32
558 723 4.601857 ACGGGGGTATATGATCAAGGATTT 59.398 41.667 0.00 0.00 0.00 2.17
559 724 4.175962 ACGGGGGTATATGATCAAGGATT 58.824 43.478 0.00 0.00 0.00 3.01
560 725 3.775316 GACGGGGGTATATGATCAAGGAT 59.225 47.826 0.00 0.00 0.00 3.24
561 726 3.170717 GACGGGGGTATATGATCAAGGA 58.829 50.000 0.00 0.00 0.00 3.36
562 727 2.094182 CGACGGGGGTATATGATCAAGG 60.094 54.545 0.00 0.00 0.00 3.61
563 728 2.674177 GCGACGGGGGTATATGATCAAG 60.674 54.545 0.00 0.00 0.00 3.02
564 729 1.274167 GCGACGGGGGTATATGATCAA 59.726 52.381 0.00 0.00 0.00 2.57
565 730 0.892755 GCGACGGGGGTATATGATCA 59.107 55.000 0.00 0.00 0.00 2.92
566 731 1.135083 CAGCGACGGGGGTATATGATC 60.135 57.143 0.00 0.00 0.00 2.92
567 732 0.895530 CAGCGACGGGGGTATATGAT 59.104 55.000 0.00 0.00 0.00 2.45
568 733 0.468585 ACAGCGACGGGGGTATATGA 60.469 55.000 0.00 0.00 0.00 2.15
569 734 0.038526 GACAGCGACGGGGGTATATG 60.039 60.000 0.00 0.00 0.00 1.78
570 735 0.178970 AGACAGCGACGGGGGTATAT 60.179 55.000 0.00 0.00 0.00 0.86
571 736 0.820891 GAGACAGCGACGGGGGTATA 60.821 60.000 0.00 0.00 0.00 1.47
572 737 2.043248 AGACAGCGACGGGGGTAT 60.043 61.111 0.00 0.00 0.00 2.73
573 738 2.753043 GAGACAGCGACGGGGGTA 60.753 66.667 0.00 0.00 0.00 3.69
574 739 4.680537 AGAGACAGCGACGGGGGT 62.681 66.667 0.00 0.00 0.00 4.95
575 740 4.135153 CAGAGACAGCGACGGGGG 62.135 72.222 0.00 0.00 0.00 5.40
576 741 3.062466 TCAGAGACAGCGACGGGG 61.062 66.667 0.00 0.00 0.00 5.73
577 742 1.938657 ATGTCAGAGACAGCGACGGG 61.939 60.000 6.01 0.00 46.04 5.28
578 743 0.799917 CATGTCAGAGACAGCGACGG 60.800 60.000 6.01 0.00 46.04 4.79
579 744 0.109551 ACATGTCAGAGACAGCGACG 60.110 55.000 6.01 0.00 46.04 5.12
580 745 1.068264 TCACATGTCAGAGACAGCGAC 60.068 52.381 0.00 0.00 46.04 5.19
581 746 1.200948 CTCACATGTCAGAGACAGCGA 59.799 52.381 7.28 1.88 46.04 4.93
582 747 1.626747 CTCACATGTCAGAGACAGCG 58.373 55.000 7.28 2.51 46.04 5.18
583 748 1.274728 ACCTCACATGTCAGAGACAGC 59.725 52.381 13.38 0.00 46.04 4.40
584 749 3.674528 AACCTCACATGTCAGAGACAG 57.325 47.619 13.38 1.79 46.04 3.51
585 750 5.070446 ACTTAAACCTCACATGTCAGAGACA 59.930 40.000 13.38 1.95 46.90 3.41
586 751 5.406780 CACTTAAACCTCACATGTCAGAGAC 59.593 44.000 13.38 0.00 33.74 3.36
587 752 5.511373 CCACTTAAACCTCACATGTCAGAGA 60.511 44.000 13.38 0.00 33.74 3.10
588 753 4.692625 CCACTTAAACCTCACATGTCAGAG 59.307 45.833 0.00 1.99 0.00 3.35
589 754 4.641396 CCACTTAAACCTCACATGTCAGA 58.359 43.478 0.00 0.00 0.00 3.27
590 755 3.189287 GCCACTTAAACCTCACATGTCAG 59.811 47.826 0.00 0.00 0.00 3.51
591 756 3.146066 GCCACTTAAACCTCACATGTCA 58.854 45.455 0.00 0.00 0.00 3.58
592 757 2.488153 GGCCACTTAAACCTCACATGTC 59.512 50.000 0.00 0.00 0.00 3.06
593 758 2.108250 AGGCCACTTAAACCTCACATGT 59.892 45.455 5.01 0.00 0.00 3.21
594 759 2.489329 CAGGCCACTTAAACCTCACATG 59.511 50.000 5.01 0.00 0.00 3.21
595 760 2.555227 CCAGGCCACTTAAACCTCACAT 60.555 50.000 5.01 0.00 0.00 3.21
596 761 1.202879 CCAGGCCACTTAAACCTCACA 60.203 52.381 5.01 0.00 0.00 3.58
597 762 1.534729 CCAGGCCACTTAAACCTCAC 58.465 55.000 5.01 0.00 0.00 3.51
598 763 0.404040 CCCAGGCCACTTAAACCTCA 59.596 55.000 5.01 0.00 0.00 3.86
599 764 0.323451 CCCCAGGCCACTTAAACCTC 60.323 60.000 5.01 0.00 0.00 3.85
600 765 1.774300 CCCCAGGCCACTTAAACCT 59.226 57.895 5.01 0.00 0.00 3.50
601 766 1.304962 CCCCCAGGCCACTTAAACC 60.305 63.158 5.01 0.00 0.00 3.27
602 767 4.434483 CCCCCAGGCCACTTAAAC 57.566 61.111 5.01 0.00 0.00 2.01
616 781 2.748465 CGGGAGATTTGATGTAACCCCC 60.748 54.545 0.00 0.00 33.08 5.40
617 782 2.171870 TCGGGAGATTTGATGTAACCCC 59.828 50.000 0.00 0.00 33.08 4.95
618 783 3.553828 TCGGGAGATTTGATGTAACCC 57.446 47.619 0.00 0.00 0.00 4.11
633 798 2.946988 ATTCGGAGCCTCCATCGGGA 62.947 60.000 12.13 0.00 42.29 5.14
634 799 2.044806 AATTCGGAGCCTCCATCGGG 62.045 60.000 12.13 0.00 35.91 5.14
635 800 0.882042 CAATTCGGAGCCTCCATCGG 60.882 60.000 12.13 0.00 35.91 4.18
636 801 1.502163 GCAATTCGGAGCCTCCATCG 61.502 60.000 12.13 0.00 35.91 3.84
637 802 0.464373 TGCAATTCGGAGCCTCCATC 60.464 55.000 12.13 0.00 35.91 3.51
638 803 0.034186 TTGCAATTCGGAGCCTCCAT 60.034 50.000 12.13 0.00 35.91 3.41
639 804 0.251121 TTTGCAATTCGGAGCCTCCA 60.251 50.000 12.13 0.00 35.91 3.86
640 805 1.106285 ATTTGCAATTCGGAGCCTCC 58.894 50.000 0.00 0.00 0.00 4.30
641 806 1.202336 CCATTTGCAATTCGGAGCCTC 60.202 52.381 0.00 0.00 0.00 4.70
642 807 0.819582 CCATTTGCAATTCGGAGCCT 59.180 50.000 0.00 0.00 0.00 4.58
643 808 0.179103 CCCATTTGCAATTCGGAGCC 60.179 55.000 0.00 0.00 0.00 4.70
644 809 0.807275 GCCCATTTGCAATTCGGAGC 60.807 55.000 8.90 7.71 0.00 4.70
645 810 0.179103 GGCCCATTTGCAATTCGGAG 60.179 55.000 8.90 2.51 0.00 4.63
655 820 8.389779 ACTTACAAAAATAAAAGGCCCATTTG 57.610 30.769 13.06 9.98 33.68 2.32
690 855 3.160269 CAGCCCCTTTTCAATCTCACTT 58.840 45.455 0.00 0.00 0.00 3.16
735 900 1.136363 TCGAATCGAAGCGCAAAACAG 60.136 47.619 11.47 0.00 31.06 3.16
736 901 0.862490 TCGAATCGAAGCGCAAAACA 59.138 45.000 11.47 0.00 31.06 2.83
780 945 1.075601 AGAGAACATTTGGGAGCCCA 58.924 50.000 3.58 3.58 45.63 5.36
781 946 2.095461 GAAGAGAACATTTGGGAGCCC 58.905 52.381 0.00 0.00 0.00 5.19
782 947 3.078891 AGAAGAGAACATTTGGGAGCC 57.921 47.619 0.00 0.00 0.00 4.70
783 948 4.279420 ACAAAGAAGAGAACATTTGGGAGC 59.721 41.667 0.00 0.00 37.04 4.70
784 949 6.211515 CAACAAAGAAGAGAACATTTGGGAG 58.788 40.000 0.00 0.00 37.04 4.30
785 950 5.068987 CCAACAAAGAAGAGAACATTTGGGA 59.931 40.000 0.00 0.00 37.04 4.37
786 951 5.068987 TCCAACAAAGAAGAGAACATTTGGG 59.931 40.000 0.00 0.00 37.04 4.12
787 952 6.147864 TCCAACAAAGAAGAGAACATTTGG 57.852 37.500 0.00 0.00 37.04 3.28
788 953 6.476706 GGTTCCAACAAAGAAGAGAACATTTG 59.523 38.462 0.00 0.00 36.25 2.32
789 954 6.406961 GGGTTCCAACAAAGAAGAGAACATTT 60.407 38.462 0.00 0.00 36.25 2.32
790 955 5.069119 GGGTTCCAACAAAGAAGAGAACATT 59.931 40.000 0.00 0.00 36.25 2.71
791 956 4.584743 GGGTTCCAACAAAGAAGAGAACAT 59.415 41.667 0.00 0.00 36.25 2.71
792 957 3.951680 GGGTTCCAACAAAGAAGAGAACA 59.048 43.478 0.00 0.00 36.25 3.18
793 958 4.207955 AGGGTTCCAACAAAGAAGAGAAC 58.792 43.478 0.00 0.00 34.31 3.01
909 1077 2.273449 CGAAGGGGGAGCAGCAAT 59.727 61.111 0.00 0.00 0.00 3.56
1164 1332 6.688073 AGTTGGAAGAAGTTGAGGAAGATA 57.312 37.500 0.00 0.00 0.00 1.98
1275 1443 1.274167 ACGGGCTGAAAATCGTAGTCA 59.726 47.619 0.00 0.00 33.89 3.41
1616 1788 2.184579 GTACCGTCCCTGCAGCTC 59.815 66.667 8.66 0.00 0.00 4.09
1659 1831 1.136141 GCAGACTGACGTTCATTGCAG 60.136 52.381 6.65 0.00 32.22 4.41
1706 1878 6.074888 CCTCAAAATAAAACAGTTGTCGCAAG 60.075 38.462 0.00 0.00 0.00 4.01
1840 2012 4.848562 ACTCGATAACTGTTGTCTGACA 57.151 40.909 6.36 6.36 0.00 3.58
1841 2013 8.906636 TTATTACTCGATAACTGTTGTCTGAC 57.093 34.615 14.11 0.00 0.00 3.51
2012 2184 4.344679 TCTTTGTCATGCTTCAAAACCCAT 59.655 37.500 10.14 0.00 33.99 4.00
2068 2240 2.567862 TCCAAGGTCCATATGGGTTGA 58.432 47.619 21.78 7.43 38.11 3.18
2096 2271 8.186163 TCAGAATGTTCATCATAGTCAAATTGC 58.814 33.333 0.00 0.00 35.48 3.56
2240 2415 0.838987 TTCCCCCGCAACTACTTCCT 60.839 55.000 0.00 0.00 0.00 3.36
2249 2424 0.916086 ATGTATCAGTTCCCCCGCAA 59.084 50.000 0.00 0.00 0.00 4.85
2297 2472 2.267426 CACAGAGTCACGAACACAACA 58.733 47.619 0.00 0.00 0.00 3.33
2407 2585 2.640332 TCCACCTGTGTATGCCAGTAAA 59.360 45.455 0.00 0.00 0.00 2.01
2431 2609 2.972348 AGGGAGTGTACAGGAAAGACA 58.028 47.619 0.00 0.00 0.00 3.41
2452 2897 0.119358 AGGAAGCTCCCCTAACCAGT 59.881 55.000 5.87 0.00 37.19 4.00
2519 2964 3.242413 CCATTCTTCGAATAGTTGCCACG 60.242 47.826 0.00 0.00 0.00 4.94
2595 3040 2.868583 CAAACCAGAGATAGGCATGTCG 59.131 50.000 0.00 0.00 29.82 4.35
2613 3062 9.160496 ACAACAGTGAAAATAAGCAAATTCAAA 57.840 25.926 0.00 0.00 33.93 2.69
2657 3106 3.760684 GTCAATGCAGGAAACTCAGGATT 59.239 43.478 0.00 0.00 40.21 3.01
2697 3146 1.066914 CGCTGAGAGACAAGAGCAAC 58.933 55.000 0.00 0.00 0.00 4.17
2702 3151 0.319900 GGTTGCGCTGAGAGACAAGA 60.320 55.000 9.73 0.00 0.00 3.02
2714 3163 2.855963 CTGAATGAATGAATGGTTGCGC 59.144 45.455 0.00 0.00 0.00 6.09
2744 3197 3.822735 CTGACTCACACCAAACAATCCAT 59.177 43.478 0.00 0.00 0.00 3.41
2745 3198 3.213506 CTGACTCACACCAAACAATCCA 58.786 45.455 0.00 0.00 0.00 3.41
2747 3200 2.349817 CGCTGACTCACACCAAACAATC 60.350 50.000 0.00 0.00 0.00 2.67
2748 3201 1.603802 CGCTGACTCACACCAAACAAT 59.396 47.619 0.00 0.00 0.00 2.71
2750 3203 0.813610 CCGCTGACTCACACCAAACA 60.814 55.000 0.00 0.00 0.00 2.83
2751 3204 0.531974 TCCGCTGACTCACACCAAAC 60.532 55.000 0.00 0.00 0.00 2.93
2785 3238 3.053831 ACTTGTAAGCATACAACGCCT 57.946 42.857 10.34 0.00 44.90 5.52
2908 3368 9.919416 TTCTCAGAATTGATGGGAAATACAATA 57.081 29.630 0.97 0.00 34.25 1.90
2918 3378 3.568853 GCCAGATTCTCAGAATTGATGGG 59.431 47.826 20.57 11.73 31.83 4.00
2923 3383 3.309138 CACGAGCCAGATTCTCAGAATTG 59.691 47.826 0.16 2.42 0.00 2.32
2928 3388 1.144565 CGCACGAGCCAGATTCTCAG 61.145 60.000 0.00 0.00 37.52 3.35
2983 3468 1.086696 CCAATGTTCGCGGAGACATT 58.913 50.000 21.94 21.94 33.80 2.71
3057 3542 3.002038 TCACATGCCATGCTAATGTCA 57.998 42.857 4.17 0.00 32.27 3.58
3127 3612 7.151999 AGAGTGTAGAGACATACAGACAAAG 57.848 40.000 0.00 0.00 38.04 2.77
3160 3645 2.093306 TGAAGTGAGGTGGTAATGCG 57.907 50.000 0.00 0.00 0.00 4.73
3162 3647 7.921786 TTCTATTTGAAGTGAGGTGGTAATG 57.078 36.000 0.00 0.00 0.00 1.90
3191 3676 7.360361 GTGGTAATGTGGTTCTTCTTTACTTG 58.640 38.462 0.00 0.00 0.00 3.16
3237 3723 7.725818 ATGCTGAATATATTGTGAGTGACAG 57.274 36.000 1.78 2.79 35.44 3.51
3372 3858 2.879756 GCCCATTAGCTTCTCAACACCA 60.880 50.000 0.00 0.00 0.00 4.17
3395 3881 1.803625 GCCCGCACATCCATTCATTTG 60.804 52.381 0.00 0.00 0.00 2.32
3433 3926 3.006537 CACTAAGTGAGGAAAGGTTCGGA 59.993 47.826 0.00 0.00 35.23 4.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.