Multiple sequence alignment - TraesCS3B01G569300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G569300 chr3B 100.000 2639 0 0 1 2639 801084449 801081811 0.000000e+00 4874
1 TraesCS3B01G569300 chr3B 82.581 1860 297 18 4 1854 803136862 803138703 0.000000e+00 1615
2 TraesCS3B01G569300 chr3B 82.886 1788 291 11 4 1786 803066942 803068719 0.000000e+00 1592
3 TraesCS3B01G569300 chr3B 82.732 1801 282 19 4 1790 801008594 801006809 0.000000e+00 1576
4 TraesCS3B01G569300 chr3B 82.090 1809 277 18 4 1808 802673420 802675185 0.000000e+00 1502
5 TraesCS3B01G569300 chr3B 81.123 1817 311 21 4 1811 803110256 803112049 0.000000e+00 1426
6 TraesCS3B01G569300 chr3B 85.451 543 69 6 2103 2637 335830475 335831015 8.250000e-155 556
7 TraesCS3B01G569300 chr3B 84.278 547 73 7 2103 2639 224829377 224828834 3.010000e-144 521
8 TraesCS3B01G569300 chr3B 96.875 64 2 0 1791 1854 801006764 801006701 9.990000e-20 108
9 TraesCS3B01G569300 chr3B 86.316 95 13 0 1353 1447 801201761 801201855 1.290000e-18 104
10 TraesCS3B01G569300 chr3D 81.818 1430 226 21 407 1825 596303826 596302420 0.000000e+00 1170
11 TraesCS3B01G569300 chr3D 90.458 262 21 3 1854 2111 384438547 384438286 2.520000e-90 342
12 TraesCS3B01G569300 chr1D 86.188 543 60 13 2103 2635 363731799 363731262 8.190000e-160 573
13 TraesCS3B01G569300 chr3A 86.004 543 65 6 2103 2637 734150078 734150617 2.950000e-159 571
14 TraesCS3B01G569300 chr7A 85.451 543 65 12 2103 2635 174924928 174925466 1.070000e-153 553
15 TraesCS3B01G569300 chr4D 85.240 542 67 11 2103 2635 110021591 110022128 1.790000e-151 545
16 TraesCS3B01G569300 chr2A 85.185 540 68 7 2107 2637 59565181 59564645 6.420000e-151 544
17 TraesCS3B01G569300 chr7D 84.404 545 72 8 2105 2639 580896900 580896359 8.370000e-145 523
18 TraesCS3B01G569300 chr7D 89.535 258 24 2 1854 2109 249618299 249618555 9.110000e-85 324
19 TraesCS3B01G569300 chrUn 84.346 543 70 13 2103 2635 468575927 468575390 3.890000e-143 518
20 TraesCS3B01G569300 chr6D 91.538 260 19 2 1854 2111 289498613 289498871 3.230000e-94 355
21 TraesCS3B01G569300 chr6D 91.129 248 22 0 1864 2111 137122365 137122612 1.170000e-88 337
22 TraesCS3B01G569300 chr6D 88.278 273 28 3 1840 2111 417771401 417771670 9.110000e-85 324
23 TraesCS3B01G569300 chr1B 90.734 259 22 1 1854 2110 311424485 311424743 6.990000e-91 344
24 TraesCS3B01G569300 chr5D 89.299 271 24 4 1844 2111 238903435 238903167 4.210000e-88 335
25 TraesCS3B01G569300 chr5D 89.272 261 25 2 1854 2111 214925856 214925596 9.110000e-85 324
26 TraesCS3B01G569300 chr7B 87.365 277 32 2 1837 2111 750059527 750059802 5.480000e-82 315


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G569300 chr3B 801081811 801084449 2638 True 4874 4874 100.0000 1 2639 1 chr3B.!!$R2 2638
1 TraesCS3B01G569300 chr3B 803136862 803138703 1841 False 1615 1615 82.5810 4 1854 1 chr3B.!!$F6 1850
2 TraesCS3B01G569300 chr3B 803066942 803068719 1777 False 1592 1592 82.8860 4 1786 1 chr3B.!!$F4 1782
3 TraesCS3B01G569300 chr3B 802673420 802675185 1765 False 1502 1502 82.0900 4 1808 1 chr3B.!!$F3 1804
4 TraesCS3B01G569300 chr3B 803110256 803112049 1793 False 1426 1426 81.1230 4 1811 1 chr3B.!!$F5 1807
5 TraesCS3B01G569300 chr3B 801006701 801008594 1893 True 842 1576 89.8035 4 1854 2 chr3B.!!$R3 1850
6 TraesCS3B01G569300 chr3B 335830475 335831015 540 False 556 556 85.4510 2103 2637 1 chr3B.!!$F1 534
7 TraesCS3B01G569300 chr3B 224828834 224829377 543 True 521 521 84.2780 2103 2639 1 chr3B.!!$R1 536
8 TraesCS3B01G569300 chr3D 596302420 596303826 1406 True 1170 1170 81.8180 407 1825 1 chr3D.!!$R2 1418
9 TraesCS3B01G569300 chr1D 363731262 363731799 537 True 573 573 86.1880 2103 2635 1 chr1D.!!$R1 532
10 TraesCS3B01G569300 chr3A 734150078 734150617 539 False 571 571 86.0040 2103 2637 1 chr3A.!!$F1 534
11 TraesCS3B01G569300 chr7A 174924928 174925466 538 False 553 553 85.4510 2103 2635 1 chr7A.!!$F1 532
12 TraesCS3B01G569300 chr4D 110021591 110022128 537 False 545 545 85.2400 2103 2635 1 chr4D.!!$F1 532
13 TraesCS3B01G569300 chr2A 59564645 59565181 536 True 544 544 85.1850 2107 2637 1 chr2A.!!$R1 530
14 TraesCS3B01G569300 chr7D 580896359 580896900 541 True 523 523 84.4040 2105 2639 1 chr7D.!!$R1 534
15 TraesCS3B01G569300 chrUn 468575390 468575927 537 True 518 518 84.3460 2103 2635 1 chrUn.!!$R1 532

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
627 628 0.409484 AAGGTAGCAGGTTGGCCATT 59.591 50.0 6.09 0.0 37.19 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2024 2089 0.037605 GGATCAGACGACACCGGTTT 60.038 55.0 2.97 0.0 40.78 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.409975 TCCGAAGTTACGAAAGCTTGG 58.590 47.619 0.00 0.00 35.09 3.61
23 24 3.002965 CCGAAGTTACGAAAGCTTGGTTT 59.997 43.478 0.00 0.00 35.09 3.27
37 38 4.018597 AGCTTGGTTTCTTGGATCTCTCAT 60.019 41.667 0.00 0.00 0.00 2.90
55 56 6.650807 TCTCTCATACAACAAATTGTCTGTCC 59.349 38.462 14.00 0.00 46.46 4.02
72 73 0.984961 TCCTGGATGGAGAAGGCAGG 60.985 60.000 0.00 0.00 40.56 4.85
76 77 1.710244 TGGATGGAGAAGGCAGGAAAA 59.290 47.619 0.00 0.00 0.00 2.29
93 94 2.773993 AAACCGTGGTACCCATACTG 57.226 50.000 10.07 0.00 35.28 2.74
103 104 3.181457 GGTACCCATACTGCCTAAACTCC 60.181 52.174 0.00 0.00 0.00 3.85
104 105 2.557869 ACCCATACTGCCTAAACTCCA 58.442 47.619 0.00 0.00 0.00 3.86
108 109 4.157840 CCCATACTGCCTAAACTCCAAAAC 59.842 45.833 0.00 0.00 0.00 2.43
112 113 7.361799 CCATACTGCCTAAACTCCAAAACTTAC 60.362 40.741 0.00 0.00 0.00 2.34
134 135 3.740832 CGACTAGTGTCTTGCAACATGAA 59.259 43.478 0.00 0.00 40.86 2.57
169 170 7.035840 AGATTCTTGATGCATGTTAATCACC 57.964 36.000 2.46 0.00 32.63 4.02
173 174 5.587443 TCTTGATGCATGTTAATCACCTCAG 59.413 40.000 2.46 0.00 32.63 3.35
174 175 3.628942 TGATGCATGTTAATCACCTCAGC 59.371 43.478 2.46 0.00 0.00 4.26
183 184 6.604171 TGTTAATCACCTCAGCATATTGGAT 58.396 36.000 0.00 0.00 0.00 3.41
190 191 3.750130 CCTCAGCATATTGGATCTTTCGG 59.250 47.826 0.00 0.00 0.00 4.30
267 268 9.952188 GATAGCCTTACACAATTAAATCTTTCC 57.048 33.333 0.00 0.00 0.00 3.13
297 298 3.338249 ACTCACACATATGCAACTCACC 58.662 45.455 1.58 0.00 0.00 4.02
309 310 4.910195 TGCAACTCACCTCATATGTTCTT 58.090 39.130 1.90 0.00 0.00 2.52
310 311 5.316167 TGCAACTCACCTCATATGTTCTTT 58.684 37.500 1.90 0.00 0.00 2.52
314 315 7.362401 GCAACTCACCTCATATGTTCTTTCATT 60.362 37.037 1.90 0.00 0.00 2.57
327 328 7.928908 TGTTCTTTCATTCAGTTATTTGCAC 57.071 32.000 0.00 0.00 0.00 4.57
328 329 7.487484 TGTTCTTTCATTCAGTTATTTGCACA 58.513 30.769 0.00 0.00 0.00 4.57
329 330 8.143193 TGTTCTTTCATTCAGTTATTTGCACAT 58.857 29.630 0.00 0.00 0.00 3.21
356 357 6.227298 TGATCTCAGTTCCAATAGACTTCC 57.773 41.667 0.00 0.00 0.00 3.46
360 361 4.425772 TCAGTTCCAATAGACTTCCAGGA 58.574 43.478 0.00 0.00 0.00 3.86
363 364 4.597507 AGTTCCAATAGACTTCCAGGACAA 59.402 41.667 0.00 0.00 0.00 3.18
389 390 3.592059 CAATGCCAATCCTGTTGAAAGG 58.408 45.455 0.00 0.00 38.84 3.11
404 405 6.880484 TGTTGAAAGGAGTTGACACTTACTA 58.120 36.000 0.00 0.00 31.22 1.82
476 477 6.183347 ACTTCACTGCTTATCTTAGCCAAAT 58.817 36.000 0.00 0.00 40.49 2.32
477 478 6.317391 ACTTCACTGCTTATCTTAGCCAAATC 59.683 38.462 0.00 0.00 40.49 2.17
481 482 3.809832 TGCTTATCTTAGCCAAATCGCTC 59.190 43.478 0.00 0.00 40.49 5.03
486 487 4.937201 TCTTAGCCAAATCGCTCATCTA 57.063 40.909 0.00 0.00 40.39 1.98
488 489 5.858381 TCTTAGCCAAATCGCTCATCTAAT 58.142 37.500 0.00 0.00 40.39 1.73
495 496 6.148480 GCCAAATCGCTCATCTAATATTGTCT 59.852 38.462 0.00 0.00 0.00 3.41
573 574 5.013079 TGAAGTCCTTGACCTGTCATACAAT 59.987 40.000 0.03 0.00 39.64 2.71
583 584 7.450074 TGACCTGTCATACAATAACTTCAGTT 58.550 34.615 0.00 0.00 37.06 3.16
585 586 7.450074 ACCTGTCATACAATAACTTCAGTTGA 58.550 34.615 2.26 0.00 38.90 3.18
586 587 7.387948 ACCTGTCATACAATAACTTCAGTTGAC 59.612 37.037 2.26 1.31 38.90 3.18
627 628 0.409484 AAGGTAGCAGGTTGGCCATT 59.591 50.000 6.09 0.00 37.19 3.16
645 646 5.874810 GGCCATTTTAAATTTGAGGGAGAAC 59.125 40.000 0.00 0.00 0.00 3.01
667 668 6.819397 ACTACTTTTAAGGAACATTGCCTC 57.181 37.500 0.00 0.00 33.76 4.70
702 703 5.636121 TGAGCATTGCAATCTTCAAACAATC 59.364 36.000 9.53 0.00 0.00 2.67
733 734 2.687935 GGCAACAAGTTTCAAGGTCTGA 59.312 45.455 0.00 0.00 0.00 3.27
738 739 2.206576 AGTTTCAAGGTCTGATGCCC 57.793 50.000 0.00 0.00 32.78 5.36
749 750 1.988107 TCTGATGCCCAGGTCTCTTTT 59.012 47.619 3.76 0.00 43.12 2.27
753 754 4.934356 TGATGCCCAGGTCTCTTTTAAAT 58.066 39.130 0.00 0.00 0.00 1.40
759 760 4.766891 CCCAGGTCTCTTTTAAATTGCTCA 59.233 41.667 0.00 0.00 0.00 4.26
760 761 5.420104 CCCAGGTCTCTTTTAAATTGCTCAT 59.580 40.000 0.00 0.00 0.00 2.90
766 767 7.486232 GGTCTCTTTTAAATTGCTCATACTTGC 59.514 37.037 0.00 0.00 0.00 4.01
777 778 3.944015 GCTCATACTTGCAGGTTCTTGAT 59.056 43.478 6.84 0.00 0.00 2.57
786 787 6.438425 ACTTGCAGGTTCTTGATATTGGAAAT 59.562 34.615 0.00 0.00 0.00 2.17
874 875 2.173569 AGATCCAACCAGTTCTATGGCC 59.826 50.000 0.00 0.00 44.80 5.36
890 891 1.049402 GGCCCGCTTACTTATCCTCT 58.951 55.000 0.00 0.00 0.00 3.69
891 892 1.416772 GGCCCGCTTACTTATCCTCTT 59.583 52.381 0.00 0.00 0.00 2.85
911 912 5.694995 TCTTAGAGATAGCAAATTTGGGGG 58.305 41.667 19.47 0.00 0.00 5.40
954 955 8.344831 CAAATCATCGACATAGCCTCAAATAAA 58.655 33.333 0.00 0.00 0.00 1.40
960 961 6.420903 TCGACATAGCCTCAAATAAATTCTCG 59.579 38.462 0.00 0.00 0.00 4.04
966 967 4.381505 GCCTCAAATAAATTCTCGGGCAAA 60.382 41.667 0.00 0.00 37.30 3.68
998 999 6.016360 CCACAATGGTTTGAGAGTTTGACATA 60.016 38.462 0.00 0.00 36.64 2.29
1045 1046 8.375506 ACACAGGATATATTTTATGTCATCCGT 58.624 33.333 0.00 0.00 37.58 4.69
1087 1088 4.870426 ACTACCAAGATACTGTTGCAATCG 59.130 41.667 0.59 0.00 0.00 3.34
1122 1123 6.165577 GCAGTATGTGACATTTGGGAAAATT 58.834 36.000 2.29 0.00 39.31 1.82
1130 1131 6.018016 GTGACATTTGGGAAAATTTTGTCTGG 60.018 38.462 8.47 0.00 0.00 3.86
1147 1148 2.819608 TCTGGCTTAACTGCAATTGACC 59.180 45.455 10.34 0.00 34.04 4.02
1164 1165 7.318141 CAATTGACCTCTCAAATAATGCACTT 58.682 34.615 0.00 0.00 39.90 3.16
1194 1195 3.009033 ACATTCCGGAATCAGTTGGAAGA 59.991 43.478 26.95 0.00 43.25 2.87
1231 1232 6.934083 ACACATACTGAACATGTCACACAATA 59.066 34.615 0.00 0.00 34.39 1.90
1234 1235 5.673337 ACTGAACATGTCACACAATACAC 57.327 39.130 0.00 0.00 31.13 2.90
1239 1240 8.389779 TGAACATGTCACACAATACACTTAAT 57.610 30.769 0.00 0.00 0.00 1.40
1243 1244 4.457603 TGTCACACAATACACTTAATGGGC 59.542 41.667 0.00 0.00 0.00 5.36
1273 1274 2.226200 TCACAAATTGGTGAGATGCGTG 59.774 45.455 11.82 0.00 42.56 5.34
1285 1286 1.552337 AGATGCGTGAGTTGGAGTCAT 59.448 47.619 0.00 0.00 29.14 3.06
1342 1343 8.713036 AGATTCCAGAAGAGCTAACAGATTTAT 58.287 33.333 0.00 0.00 0.00 1.40
1371 1372 1.455383 GCACCCTGAACTTGTGTGGG 61.455 60.000 0.00 0.00 43.26 4.61
1386 1387 0.251341 GTGGGAACAAGCTGGATGGT 60.251 55.000 0.00 0.00 46.06 3.55
1517 1518 4.646945 TCCAAATGAGGCACAAGTAAACAA 59.353 37.500 0.00 0.00 0.00 2.83
1533 1534 7.076842 AGTAAACAAATCGAAGGATCATGTG 57.923 36.000 0.00 0.00 34.63 3.21
1560 1561 7.540299 ACGTTATTTTGTTTCTCTTTGTTGGA 58.460 30.769 0.00 0.00 0.00 3.53
1572 1574 0.260230 TTGTTGGAGTGGGCTTTGGA 59.740 50.000 0.00 0.00 0.00 3.53
1668 1670 2.791560 CGAAGACACAAGACTCACTGTG 59.208 50.000 0.17 0.17 35.44 3.66
1699 1701 1.490490 TGCTTGCTATTACTGGAGGGG 59.510 52.381 0.00 0.00 0.00 4.79
1819 1884 7.255381 GCAGGATTGTGATGCTTATACAGAAAT 60.255 37.037 0.00 0.00 37.00 2.17
1886 1951 3.013327 GGTTAAGACCCCCGGCCT 61.013 66.667 0.00 0.00 40.25 5.19
1887 1952 2.588439 GTTAAGACCCCCGGCCTC 59.412 66.667 0.00 0.00 0.00 4.70
1888 1953 1.993948 GTTAAGACCCCCGGCCTCT 60.994 63.158 0.00 0.00 0.00 3.69
1889 1954 1.993391 TTAAGACCCCCGGCCTCTG 60.993 63.158 0.00 0.00 0.00 3.35
1895 1960 4.113815 CCCCGGCCTCTGCATCAA 62.114 66.667 0.00 0.00 40.13 2.57
1896 1961 2.194056 CCCGGCCTCTGCATCAAT 59.806 61.111 0.00 0.00 40.13 2.57
1897 1962 1.895707 CCCGGCCTCTGCATCAATC 60.896 63.158 0.00 0.00 40.13 2.67
1898 1963 2.249535 CCGGCCTCTGCATCAATCG 61.250 63.158 0.00 0.00 40.13 3.34
1899 1964 1.227350 CGGCCTCTGCATCAATCGA 60.227 57.895 0.00 0.00 40.13 3.59
1900 1965 0.602106 CGGCCTCTGCATCAATCGAT 60.602 55.000 0.00 0.00 40.13 3.59
1910 1975 2.390938 CATCAATCGATGCATGCAACC 58.609 47.619 26.68 18.06 42.54 3.77
1911 1976 1.461559 TCAATCGATGCATGCAACCA 58.538 45.000 26.68 11.67 0.00 3.67
1912 1977 2.025898 TCAATCGATGCATGCAACCAT 58.974 42.857 26.68 13.76 0.00 3.55
1913 1978 2.033675 TCAATCGATGCATGCAACCATC 59.966 45.455 26.68 16.53 35.61 3.51
1914 1979 1.977056 ATCGATGCATGCAACCATCT 58.023 45.000 26.68 6.72 36.55 2.90
1915 1980 1.018910 TCGATGCATGCAACCATCTG 58.981 50.000 26.68 13.26 36.55 2.90
1916 1981 0.736636 CGATGCATGCAACCATCTGT 59.263 50.000 26.68 4.93 36.55 3.41
1917 1982 1.941975 CGATGCATGCAACCATCTGTA 59.058 47.619 26.68 0.00 36.55 2.74
1918 1983 2.551032 CGATGCATGCAACCATCTGTAT 59.449 45.455 26.68 3.17 36.55 2.29
1919 1984 3.004002 CGATGCATGCAACCATCTGTATT 59.996 43.478 26.68 2.55 36.55 1.89
1920 1985 4.213906 CGATGCATGCAACCATCTGTATTA 59.786 41.667 26.68 0.00 36.55 0.98
1921 1986 5.277925 CGATGCATGCAACCATCTGTATTAA 60.278 40.000 26.68 0.00 36.55 1.40
1922 1987 6.569035 CGATGCATGCAACCATCTGTATTAAT 60.569 38.462 26.68 1.01 36.55 1.40
1923 1988 6.468333 TGCATGCAACCATCTGTATTAATT 57.532 33.333 20.30 0.00 0.00 1.40
1924 1989 7.579761 TGCATGCAACCATCTGTATTAATTA 57.420 32.000 20.30 0.00 0.00 1.40
1925 1990 8.180706 TGCATGCAACCATCTGTATTAATTAT 57.819 30.769 20.30 0.00 0.00 1.28
1926 1991 8.640651 TGCATGCAACCATCTGTATTAATTATT 58.359 29.630 20.30 0.00 0.00 1.40
1927 1992 9.132521 GCATGCAACCATCTGTATTAATTATTC 57.867 33.333 14.21 0.00 0.00 1.75
1947 2012 9.736023 ATTATTCAACAAAAGTCTGACAAGAAC 57.264 29.630 10.88 0.00 33.05 3.01
1948 2013 6.567687 TTCAACAAAAGTCTGACAAGAACA 57.432 33.333 10.88 0.00 33.05 3.18
1949 2014 6.757897 TCAACAAAAGTCTGACAAGAACAT 57.242 33.333 10.88 0.00 33.05 2.71
1950 2015 7.857734 TCAACAAAAGTCTGACAAGAACATA 57.142 32.000 10.88 0.00 33.05 2.29
1951 2016 8.450578 TCAACAAAAGTCTGACAAGAACATAT 57.549 30.769 10.88 0.00 33.05 1.78
1952 2017 9.554395 TCAACAAAAGTCTGACAAGAACATATA 57.446 29.630 10.88 0.00 33.05 0.86
1955 2020 9.725019 ACAAAAGTCTGACAAGAACATATATGA 57.275 29.630 19.63 0.00 33.05 2.15
1958 2023 9.950496 AAAGTCTGACAAGAACATATATGAAGT 57.050 29.630 19.63 9.28 33.05 3.01
1959 2024 9.593134 AAGTCTGACAAGAACATATATGAAGTC 57.407 33.333 19.63 16.44 33.05 3.01
1960 2025 8.753133 AGTCTGACAAGAACATATATGAAGTCA 58.247 33.333 19.63 19.24 33.05 3.41
1961 2026 8.812329 GTCTGACAAGAACATATATGAAGTCAC 58.188 37.037 19.63 9.77 33.05 3.67
1962 2027 7.981789 TCTGACAAGAACATATATGAAGTCACC 59.018 37.037 19.63 4.49 31.13 4.02
1963 2028 7.047891 TGACAAGAACATATATGAAGTCACCC 58.952 38.462 19.63 3.24 0.00 4.61
1964 2029 6.049149 ACAAGAACATATATGAAGTCACCCG 58.951 40.000 19.63 6.16 0.00 5.28
1965 2030 6.127168 ACAAGAACATATATGAAGTCACCCGA 60.127 38.462 19.63 0.00 0.00 5.14
1966 2031 6.479972 AGAACATATATGAAGTCACCCGAA 57.520 37.500 19.63 0.00 0.00 4.30
1967 2032 6.516718 AGAACATATATGAAGTCACCCGAAG 58.483 40.000 19.63 0.00 0.00 3.79
1968 2033 4.632153 ACATATATGAAGTCACCCGAAGC 58.368 43.478 19.63 0.00 0.00 3.86
1969 2034 2.622064 ATATGAAGTCACCCGAAGCC 57.378 50.000 0.00 0.00 0.00 4.35
1970 2035 1.271856 TATGAAGTCACCCGAAGCCA 58.728 50.000 0.00 0.00 0.00 4.75
1971 2036 0.321653 ATGAAGTCACCCGAAGCCAC 60.322 55.000 0.00 0.00 0.00 5.01
1972 2037 1.671379 GAAGTCACCCGAAGCCACC 60.671 63.158 0.00 0.00 0.00 4.61
1973 2038 2.391724 GAAGTCACCCGAAGCCACCA 62.392 60.000 0.00 0.00 0.00 4.17
1974 2039 2.668550 GTCACCCGAAGCCACCAC 60.669 66.667 0.00 0.00 0.00 4.16
1975 2040 2.847234 TCACCCGAAGCCACCACT 60.847 61.111 0.00 0.00 0.00 4.00
1976 2041 2.358737 CACCCGAAGCCACCACTC 60.359 66.667 0.00 0.00 0.00 3.51
1977 2042 2.847234 ACCCGAAGCCACCACTCA 60.847 61.111 0.00 0.00 0.00 3.41
1978 2043 2.358737 CCCGAAGCCACCACTCAC 60.359 66.667 0.00 0.00 0.00 3.51
1979 2044 2.425592 CCGAAGCCACCACTCACA 59.574 61.111 0.00 0.00 0.00 3.58
1980 2045 1.961277 CCGAAGCCACCACTCACAC 60.961 63.158 0.00 0.00 0.00 3.82
1981 2046 1.961277 CGAAGCCACCACTCACACC 60.961 63.158 0.00 0.00 0.00 4.16
1982 2047 1.451936 GAAGCCACCACTCACACCT 59.548 57.895 0.00 0.00 0.00 4.00
1983 2048 0.685097 GAAGCCACCACTCACACCTA 59.315 55.000 0.00 0.00 0.00 3.08
1984 2049 0.396811 AAGCCACCACTCACACCTAC 59.603 55.000 0.00 0.00 0.00 3.18
1985 2050 0.762842 AGCCACCACTCACACCTACA 60.763 55.000 0.00 0.00 0.00 2.74
1986 2051 0.107831 GCCACCACTCACACCTACAA 59.892 55.000 0.00 0.00 0.00 2.41
1987 2052 1.878953 CCACCACTCACACCTACAAC 58.121 55.000 0.00 0.00 0.00 3.32
1988 2053 1.542547 CCACCACTCACACCTACAACC 60.543 57.143 0.00 0.00 0.00 3.77
1989 2054 1.416401 CACCACTCACACCTACAACCT 59.584 52.381 0.00 0.00 0.00 3.50
1990 2055 1.692519 ACCACTCACACCTACAACCTC 59.307 52.381 0.00 0.00 0.00 3.85
1991 2056 1.336887 CCACTCACACCTACAACCTCG 60.337 57.143 0.00 0.00 0.00 4.63
1992 2057 1.611977 CACTCACACCTACAACCTCGA 59.388 52.381 0.00 0.00 0.00 4.04
1993 2058 2.231478 CACTCACACCTACAACCTCGAT 59.769 50.000 0.00 0.00 0.00 3.59
1994 2059 3.442625 CACTCACACCTACAACCTCGATA 59.557 47.826 0.00 0.00 0.00 2.92
1995 2060 4.082408 CACTCACACCTACAACCTCGATAA 60.082 45.833 0.00 0.00 0.00 1.75
1996 2061 4.710375 ACTCACACCTACAACCTCGATAAT 59.290 41.667 0.00 0.00 0.00 1.28
1997 2062 5.006153 TCACACCTACAACCTCGATAATG 57.994 43.478 0.00 0.00 0.00 1.90
1998 2063 4.464951 TCACACCTACAACCTCGATAATGT 59.535 41.667 0.00 0.00 0.00 2.71
1999 2064 4.566759 CACACCTACAACCTCGATAATGTG 59.433 45.833 7.21 0.00 0.00 3.21
2000 2065 4.119862 CACCTACAACCTCGATAATGTGG 58.880 47.826 7.21 4.74 0.00 4.17
2001 2066 4.028131 ACCTACAACCTCGATAATGTGGA 58.972 43.478 8.77 0.00 0.00 4.02
2002 2067 4.099573 ACCTACAACCTCGATAATGTGGAG 59.900 45.833 8.77 0.06 32.91 3.86
2003 2068 4.099573 CCTACAACCTCGATAATGTGGAGT 59.900 45.833 8.77 3.17 31.32 3.85
2004 2069 3.861840 ACAACCTCGATAATGTGGAGTG 58.138 45.455 0.00 0.00 31.32 3.51
2005 2070 2.604046 ACCTCGATAATGTGGAGTGC 57.396 50.000 0.00 0.00 31.32 4.40
2006 2071 2.111384 ACCTCGATAATGTGGAGTGCT 58.889 47.619 0.00 0.00 31.32 4.40
2007 2072 2.101582 ACCTCGATAATGTGGAGTGCTC 59.898 50.000 0.00 0.00 31.32 4.26
2008 2073 2.363680 CCTCGATAATGTGGAGTGCTCT 59.636 50.000 0.00 0.00 31.32 4.09
2009 2074 3.551863 CCTCGATAATGTGGAGTGCTCTC 60.552 52.174 7.26 7.26 39.76 3.20
2010 2075 3.023832 TCGATAATGTGGAGTGCTCTCA 58.976 45.455 17.04 0.00 42.05 3.27
2011 2076 3.119291 CGATAATGTGGAGTGCTCTCAC 58.881 50.000 17.04 12.90 42.05 3.51
2021 2086 2.829741 GTGCTCTCACTCCCCATATC 57.170 55.000 0.00 0.00 40.03 1.63
2022 2087 2.042464 GTGCTCTCACTCCCCATATCA 58.958 52.381 0.00 0.00 40.03 2.15
2023 2088 2.435805 GTGCTCTCACTCCCCATATCAA 59.564 50.000 0.00 0.00 40.03 2.57
2024 2089 3.114606 TGCTCTCACTCCCCATATCAAA 58.885 45.455 0.00 0.00 0.00 2.69
2025 2090 3.523157 TGCTCTCACTCCCCATATCAAAA 59.477 43.478 0.00 0.00 0.00 2.44
2026 2091 4.018506 TGCTCTCACTCCCCATATCAAAAA 60.019 41.667 0.00 0.00 0.00 1.94
2027 2092 4.336713 GCTCTCACTCCCCATATCAAAAAC 59.663 45.833 0.00 0.00 0.00 2.43
2028 2093 4.855340 TCTCACTCCCCATATCAAAAACC 58.145 43.478 0.00 0.00 0.00 3.27
2029 2094 3.616219 TCACTCCCCATATCAAAAACCG 58.384 45.455 0.00 0.00 0.00 4.44
2030 2095 2.687935 CACTCCCCATATCAAAAACCGG 59.312 50.000 0.00 0.00 0.00 5.28
2031 2096 2.310647 ACTCCCCATATCAAAAACCGGT 59.689 45.455 0.00 0.00 0.00 5.28
2032 2097 2.687935 CTCCCCATATCAAAAACCGGTG 59.312 50.000 8.52 0.00 0.00 4.94
2033 2098 2.041891 TCCCCATATCAAAAACCGGTGT 59.958 45.455 8.52 0.00 0.00 4.16
2034 2099 2.425668 CCCCATATCAAAAACCGGTGTC 59.574 50.000 8.52 0.00 0.00 3.67
2035 2100 2.096819 CCCATATCAAAAACCGGTGTCG 59.903 50.000 8.52 0.00 0.00 4.35
2036 2101 2.745281 CCATATCAAAAACCGGTGTCGT 59.255 45.455 8.52 0.00 33.95 4.34
2037 2102 3.181514 CCATATCAAAAACCGGTGTCGTC 60.182 47.826 8.52 0.00 33.95 4.20
2038 2103 2.249844 ATCAAAAACCGGTGTCGTCT 57.750 45.000 8.52 0.00 33.95 4.18
2039 2104 1.292061 TCAAAAACCGGTGTCGTCTG 58.708 50.000 8.52 0.00 33.95 3.51
2040 2105 1.134759 TCAAAAACCGGTGTCGTCTGA 60.135 47.619 8.52 0.85 33.95 3.27
2041 2106 1.871039 CAAAAACCGGTGTCGTCTGAT 59.129 47.619 8.52 0.00 33.95 2.90
2042 2107 1.792006 AAAACCGGTGTCGTCTGATC 58.208 50.000 8.52 0.00 33.95 2.92
2043 2108 0.037605 AAACCGGTGTCGTCTGATCC 60.038 55.000 8.52 0.00 33.95 3.36
2044 2109 1.183030 AACCGGTGTCGTCTGATCCA 61.183 55.000 8.52 0.00 33.95 3.41
2045 2110 0.970937 ACCGGTGTCGTCTGATCCAT 60.971 55.000 6.12 0.00 33.95 3.41
2046 2111 0.249073 CCGGTGTCGTCTGATCCATC 60.249 60.000 0.00 0.00 33.95 3.51
2047 2112 0.249073 CGGTGTCGTCTGATCCATCC 60.249 60.000 0.00 0.00 0.00 3.51
2048 2113 0.824109 GGTGTCGTCTGATCCATCCA 59.176 55.000 0.00 0.00 0.00 3.41
2049 2114 1.471676 GGTGTCGTCTGATCCATCCAC 60.472 57.143 0.00 0.00 0.00 4.02
2050 2115 1.204704 GTGTCGTCTGATCCATCCACA 59.795 52.381 0.00 0.00 0.00 4.17
2051 2116 2.110578 TGTCGTCTGATCCATCCACAT 58.889 47.619 0.00 0.00 0.00 3.21
2052 2117 3.068165 GTGTCGTCTGATCCATCCACATA 59.932 47.826 0.00 0.00 0.00 2.29
2053 2118 3.704061 TGTCGTCTGATCCATCCACATAA 59.296 43.478 0.00 0.00 0.00 1.90
2054 2119 4.051922 GTCGTCTGATCCATCCACATAAC 58.948 47.826 0.00 0.00 0.00 1.89
2055 2120 3.052745 CGTCTGATCCATCCACATAACG 58.947 50.000 0.00 0.00 0.00 3.18
2056 2121 3.490933 CGTCTGATCCATCCACATAACGT 60.491 47.826 0.00 0.00 0.00 3.99
2057 2122 4.261447 CGTCTGATCCATCCACATAACGTA 60.261 45.833 0.00 0.00 0.00 3.57
2058 2123 5.564848 CGTCTGATCCATCCACATAACGTAT 60.565 44.000 0.00 0.00 0.00 3.06
2059 2124 5.864474 GTCTGATCCATCCACATAACGTATC 59.136 44.000 0.00 0.00 0.00 2.24
2060 2125 4.805219 TGATCCATCCACATAACGTATCG 58.195 43.478 0.00 0.00 0.00 2.92
2061 2126 3.653539 TCCATCCACATAACGTATCGG 57.346 47.619 0.00 0.00 0.00 4.18
2062 2127 3.224269 TCCATCCACATAACGTATCGGA 58.776 45.455 0.00 0.00 0.00 4.55
2063 2128 3.637694 TCCATCCACATAACGTATCGGAA 59.362 43.478 0.00 0.00 0.00 4.30
2064 2129 3.739300 CCATCCACATAACGTATCGGAAC 59.261 47.826 0.00 0.00 0.00 3.62
2065 2130 3.441496 TCCACATAACGTATCGGAACC 57.559 47.619 0.00 0.00 0.00 3.62
2066 2131 3.025978 TCCACATAACGTATCGGAACCT 58.974 45.455 0.00 0.00 0.00 3.50
2067 2132 4.206375 TCCACATAACGTATCGGAACCTA 58.794 43.478 0.00 0.00 0.00 3.08
2068 2133 4.036734 TCCACATAACGTATCGGAACCTAC 59.963 45.833 0.00 0.00 0.00 3.18
2069 2134 4.202040 CCACATAACGTATCGGAACCTACA 60.202 45.833 0.00 0.00 0.00 2.74
2070 2135 4.974275 CACATAACGTATCGGAACCTACAG 59.026 45.833 0.00 0.00 0.00 2.74
2071 2136 4.037208 ACATAACGTATCGGAACCTACAGG 59.963 45.833 0.00 0.00 42.17 4.00
2081 2146 2.749682 CCTACAGGTGGTGCAGCA 59.250 61.111 15.99 15.99 33.95 4.41
2082 2147 1.073025 CCTACAGGTGGTGCAGCAA 59.927 57.895 22.04 3.29 33.95 3.91
2083 2148 0.537143 CCTACAGGTGGTGCAGCAAA 60.537 55.000 22.04 0.00 33.95 3.68
2084 2149 0.593128 CTACAGGTGGTGCAGCAAAC 59.407 55.000 22.04 16.47 33.95 2.93
2085 2150 0.106967 TACAGGTGGTGCAGCAAACA 60.107 50.000 22.04 1.39 33.95 2.83
2086 2151 0.756442 ACAGGTGGTGCAGCAAACAT 60.756 50.000 22.04 3.70 33.95 2.71
2087 2152 1.246649 CAGGTGGTGCAGCAAACATA 58.753 50.000 22.04 0.00 33.95 2.29
2088 2153 1.612950 CAGGTGGTGCAGCAAACATAA 59.387 47.619 22.04 0.00 33.95 1.90
2089 2154 2.035704 CAGGTGGTGCAGCAAACATAAA 59.964 45.455 22.04 0.00 33.95 1.40
2090 2155 2.297033 AGGTGGTGCAGCAAACATAAAG 59.703 45.455 22.04 0.00 33.95 1.85
2091 2156 2.061028 GTGGTGCAGCAAACATAAAGC 58.939 47.619 22.04 0.38 0.00 3.51
2092 2157 1.335780 TGGTGCAGCAAACATAAAGCG 60.336 47.619 17.80 0.00 0.00 4.68
2093 2158 1.335872 GGTGCAGCAAACATAAAGCGT 60.336 47.619 11.86 0.00 0.00 5.07
2094 2159 2.095466 GGTGCAGCAAACATAAAGCGTA 60.095 45.455 11.86 0.00 0.00 4.42
2095 2160 2.908626 GTGCAGCAAACATAAAGCGTAC 59.091 45.455 0.00 0.00 0.00 3.67
2096 2161 2.550180 TGCAGCAAACATAAAGCGTACA 59.450 40.909 0.00 0.00 0.00 2.90
2097 2162 2.908626 GCAGCAAACATAAAGCGTACAC 59.091 45.455 0.00 0.00 0.00 2.90
2098 2163 3.488489 CAGCAAACATAAAGCGTACACC 58.512 45.455 0.00 0.00 0.00 4.16
2099 2164 3.058570 CAGCAAACATAAAGCGTACACCA 60.059 43.478 0.00 0.00 0.00 4.17
2100 2165 3.058501 AGCAAACATAAAGCGTACACCAC 60.059 43.478 0.00 0.00 0.00 4.16
2101 2166 3.304123 GCAAACATAAAGCGTACACCACA 60.304 43.478 0.00 0.00 0.00 4.17
2117 2182 1.593209 ACATGAACACGTCGCGGTT 60.593 52.632 6.13 1.34 0.00 4.44
2125 2190 3.179265 CGTCGCGGTTGCCACTAG 61.179 66.667 6.13 0.00 38.08 2.57
2131 2196 0.320073 GCGGTTGCCACTAGTACACA 60.320 55.000 0.00 0.00 33.98 3.72
2132 2197 1.425412 CGGTTGCCACTAGTACACAC 58.575 55.000 0.00 0.00 0.00 3.82
2137 2202 2.321719 TGCCACTAGTACACACCTCAA 58.678 47.619 0.00 0.00 0.00 3.02
2144 2209 3.857157 AGTACACACCTCAACACCATT 57.143 42.857 0.00 0.00 0.00 3.16
2146 2211 1.981256 ACACACCTCAACACCATTCC 58.019 50.000 0.00 0.00 0.00 3.01
2149 2214 0.606401 CACCTCAACACCATTCCGCT 60.606 55.000 0.00 0.00 0.00 5.52
2182 2247 2.032808 GCCGACACAACTTGAAGTCTTC 60.033 50.000 5.58 5.58 0.00 2.87
2188 2253 3.248602 CACAACTTGAAGTCTTCGGAAGG 59.751 47.826 17.19 2.54 0.00 3.46
2229 2294 1.229975 CGAACAGGCATGACACAGCA 61.230 55.000 4.84 0.00 0.00 4.41
2255 2320 2.512515 GTCGGCCAGGCATGACTC 60.513 66.667 22.72 1.40 34.31 3.36
2267 2332 1.135915 GCATGACTCGACATCTCCACT 59.864 52.381 0.00 0.00 0.00 4.00
2308 2373 3.005539 GCTCCACCTCCTGCCTCA 61.006 66.667 0.00 0.00 0.00 3.86
2315 2380 0.178921 ACCTCCTGCCTCAGTCTTCA 60.179 55.000 0.00 0.00 0.00 3.02
2327 2392 2.433145 TCTTCAAGCGCTGCTCCG 60.433 61.111 12.58 0.00 38.25 4.63
2352 2419 2.093764 ACGATGCTCCCAAGAGAGAAAG 60.094 50.000 0.00 0.00 43.39 2.62
2369 2436 0.178981 AAGGACATTGCAGTGCCACT 60.179 50.000 13.72 9.39 0.00 4.00
2373 2440 2.358957 GACATTGCAGTGCCACTATCA 58.641 47.619 13.72 0.00 0.00 2.15
2382 2449 3.986572 CAGTGCCACTATCATTCGATCTC 59.013 47.826 0.00 0.00 32.73 2.75
2405 2473 2.915869 ACACCAGATCCTAGGGTTTCA 58.084 47.619 9.46 0.00 31.03 2.69
2417 2485 2.032681 GTTTCACCCGGAGCAGCT 59.967 61.111 0.73 0.00 0.00 4.24
2441 2509 4.421948 GAGTGGGTCGACAATAGTTACAG 58.578 47.826 18.91 0.00 0.00 2.74
2449 2517 4.637091 TCGACAATAGTTACAGGACGATGA 59.363 41.667 0.00 0.00 0.00 2.92
2453 2521 7.400599 ACAATAGTTACAGGACGATGACTTA 57.599 36.000 0.00 0.00 0.00 2.24
2461 2529 4.122776 CAGGACGATGACTTAATCAAGGG 58.877 47.826 0.00 0.00 41.93 3.95
2473 2541 0.108615 ATCAAGGGAACGACGCAGAG 60.109 55.000 0.00 0.00 0.00 3.35
2519 2587 1.402325 GGTTTTCACCGGCAACTATGC 60.402 52.381 0.00 0.00 42.04 3.14
2520 2588 3.713951 GGTTTTCACCGGCAACTATGCT 61.714 50.000 0.00 0.00 42.26 3.79
2551 2619 1.332195 CAGCCGGGACTAGATGATGA 58.668 55.000 2.18 0.00 0.00 2.92
2558 2635 3.119673 CGGGACTAGATGATGAATCCGAG 60.120 52.174 0.00 0.00 37.43 4.63
2587 2664 2.039624 AGGCCGACCACCTCTGAT 59.960 61.111 0.00 0.00 39.06 2.90
2590 2667 1.142748 GCCGACCACCTCTGATGAG 59.857 63.158 0.00 0.00 39.92 2.90
2604 2681 2.027385 TGATGAGAGAGATGACCACCG 58.973 52.381 0.00 0.00 0.00 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.224113 ACCAAGCTTTCGTAACTTCGGA 60.224 45.455 0.00 0.00 0.00 4.55
1 2 2.140717 ACCAAGCTTTCGTAACTTCGG 58.859 47.619 0.00 0.00 0.00 4.30
2 3 3.872560 AACCAAGCTTTCGTAACTTCG 57.127 42.857 0.00 0.00 0.00 3.79
20 21 7.672983 TTGTTGTATGAGAGATCCAAGAAAC 57.327 36.000 0.00 0.00 0.00 2.78
23 24 7.884877 ACAATTTGTTGTATGAGAGATCCAAGA 59.115 33.333 0.00 0.00 32.60 3.02
37 38 5.042463 TCCAGGACAGACAATTTGTTGTA 57.958 39.130 3.08 0.00 34.90 2.41
55 56 0.914644 TTCCTGCCTTCTCCATCCAG 59.085 55.000 0.00 0.00 0.00 3.86
93 94 4.753610 AGTCGTAAGTTTTGGAGTTTAGGC 59.246 41.667 0.00 0.00 39.48 3.93
134 135 7.707624 TGCATCAAGAATCTAGGAATTGTTT 57.292 32.000 0.00 0.00 0.00 2.83
169 170 4.450419 GTCCGAAAGATCCAATATGCTGAG 59.550 45.833 0.00 0.00 0.00 3.35
173 174 4.335315 TGTTGTCCGAAAGATCCAATATGC 59.665 41.667 0.00 0.00 0.00 3.14
174 175 6.435430 TTGTTGTCCGAAAGATCCAATATG 57.565 37.500 0.00 0.00 0.00 1.78
183 184 5.048364 CCCATGTATTTTGTTGTCCGAAAGA 60.048 40.000 0.00 0.00 29.93 2.52
190 191 7.012989 GGGTATAGTCCCATGTATTTTGTTGTC 59.987 40.741 0.00 0.00 46.30 3.18
267 268 6.180771 TGCATATGTGTGAGTATGTTGTTG 57.819 37.500 4.29 0.00 32.27 3.33
277 278 3.603532 AGGTGAGTTGCATATGTGTGAG 58.396 45.455 4.29 0.00 0.00 3.51
309 310 8.358895 TCAAGAATGTGCAAATAACTGAATGAA 58.641 29.630 0.00 0.00 0.00 2.57
310 311 7.884257 TCAAGAATGTGCAAATAACTGAATGA 58.116 30.769 0.00 0.00 0.00 2.57
314 315 7.391275 TGAGATCAAGAATGTGCAAATAACTGA 59.609 33.333 0.00 0.00 0.00 3.41
325 326 6.754702 ATTGGAACTGAGATCAAGAATGTG 57.245 37.500 0.00 0.00 0.00 3.21
327 328 7.986320 AGTCTATTGGAACTGAGATCAAGAATG 59.014 37.037 0.00 0.00 0.00 2.67
328 329 8.088463 AGTCTATTGGAACTGAGATCAAGAAT 57.912 34.615 0.00 0.00 0.00 2.40
329 330 7.487822 AGTCTATTGGAACTGAGATCAAGAA 57.512 36.000 0.00 0.00 0.00 2.52
356 357 1.559368 TGGCATTGGGATTTGTCCTG 58.441 50.000 0.00 0.00 0.00 3.86
360 361 2.502538 CAGGATTGGCATTGGGATTTGT 59.497 45.455 0.00 0.00 0.00 2.83
363 364 2.502538 CAACAGGATTGGCATTGGGATT 59.497 45.455 0.00 0.00 0.00 3.01
377 378 3.199946 AGTGTCAACTCCTTTCAACAGGA 59.800 43.478 0.00 0.00 41.00 3.86
513 514 7.765695 ATCACAAATTGAGTGTGGTATTTCT 57.234 32.000 0.00 0.00 45.27 2.52
514 515 8.081633 TGAATCACAAATTGAGTGTGGTATTTC 58.918 33.333 0.00 7.71 45.27 2.17
516 517 7.523293 TGAATCACAAATTGAGTGTGGTATT 57.477 32.000 0.00 3.16 45.27 1.89
525 526 5.535333 AGGTTGCTTGAATCACAAATTGAG 58.465 37.500 0.00 0.00 37.77 3.02
573 574 9.599866 CATGATGGTATTAGTCAACTGAAGTTA 57.400 33.333 0.00 0.00 36.32 2.24
583 584 4.356405 CCAGGCATGATGGTATTAGTCA 57.644 45.455 0.00 0.00 32.85 3.41
597 598 1.765314 CTGCTACCTTCTACCAGGCAT 59.235 52.381 0.00 0.00 37.47 4.40
618 619 5.555966 TCCCTCAAATTTAAAATGGCCAAC 58.444 37.500 10.96 0.00 0.00 3.77
645 646 6.817765 TGAGGCAATGTTCCTTAAAAGTAG 57.182 37.500 0.00 0.00 33.24 2.57
667 668 7.423199 AGATTGCAATGCTCACTAACATTATG 58.577 34.615 18.59 0.00 34.80 1.90
731 732 4.380843 TTTAAAAGAGACCTGGGCATCA 57.619 40.909 0.47 0.00 0.00 3.07
733 734 4.081476 GCAATTTAAAAGAGACCTGGGCAT 60.081 41.667 0.47 0.00 0.00 4.40
738 739 8.273780 AGTATGAGCAATTTAAAAGAGACCTG 57.726 34.615 0.00 0.00 0.00 4.00
749 750 5.945784 AGAACCTGCAAGTATGAGCAATTTA 59.054 36.000 0.00 0.00 40.73 1.40
753 754 3.423539 AGAACCTGCAAGTATGAGCAA 57.576 42.857 0.00 0.00 40.73 3.91
759 760 6.662755 TCCAATATCAAGAACCTGCAAGTAT 58.337 36.000 0.00 0.00 0.00 2.12
760 761 6.061022 TCCAATATCAAGAACCTGCAAGTA 57.939 37.500 0.00 0.00 0.00 2.24
874 875 6.827586 ATCTCTAAGAGGATAAGTAAGCGG 57.172 41.667 0.00 0.00 0.00 5.52
890 891 5.725551 TCCCCCAAATTTGCTATCTCTAA 57.274 39.130 12.92 0.00 0.00 2.10
891 892 5.930209 ATCCCCCAAATTTGCTATCTCTA 57.070 39.130 12.92 0.00 0.00 2.43
911 912 9.907576 CGATGATTTGTAACTTTGAGAAGTATC 57.092 33.333 0.00 0.00 45.18 2.24
936 937 6.346919 CCGAGAATTTATTTGAGGCTATGTCG 60.347 42.308 0.00 0.00 0.00 4.35
954 955 2.310538 GGATCCAATTTGCCCGAGAAT 58.689 47.619 6.95 0.00 0.00 2.40
960 961 2.420408 CCATTGTGGATCCAATTTGCCC 60.420 50.000 18.20 2.25 40.96 5.36
966 967 4.676109 TCTCAAACCATTGTGGATCCAAT 58.324 39.130 18.20 4.24 40.96 3.16
998 999 8.510243 TGTGTCATTTGACTTTGCTATCATAT 57.490 30.769 11.67 0.00 44.99 1.78
1005 1006 3.554934 TCCTGTGTCATTTGACTTTGCT 58.445 40.909 11.67 0.00 44.99 3.91
1058 1059 7.390823 TGCAACAGTATCTTGGTAGTATGAAA 58.609 34.615 0.00 0.00 0.00 2.69
1087 1088 3.065371 GTCACATACTGCCCTTTGTATGC 59.935 47.826 11.54 0.00 45.72 3.14
1122 1123 4.340666 TCAATTGCAGTTAAGCCAGACAAA 59.659 37.500 0.00 0.00 0.00 2.83
1130 1131 3.753272 TGAGAGGTCAATTGCAGTTAAGC 59.247 43.478 0.00 0.00 0.00 3.09
1147 1148 6.094464 TCACCATCAAGTGCATTATTTGAGAG 59.906 38.462 0.00 0.00 38.25 3.20
1164 1165 2.238395 TGATTCCGGAATGTCACCATCA 59.762 45.455 33.84 20.18 0.00 3.07
1194 1195 7.948357 TGTTCAGTATGTGTAGTGAAACTAGT 58.052 34.615 7.15 0.00 46.46 2.57
1231 1232 1.283613 TGGAATCCGCCCATTAAGTGT 59.716 47.619 0.00 0.00 0.00 3.55
1234 1235 2.554032 GTGATGGAATCCGCCCATTAAG 59.446 50.000 0.00 0.00 44.73 1.85
1239 1240 0.038890 TTTGTGATGGAATCCGCCCA 59.961 50.000 0.00 0.00 44.73 5.36
1243 1244 3.443329 TCACCAATTTGTGATGGAATCCG 59.557 43.478 8.22 0.00 44.73 4.18
1273 1274 5.836358 AGGATAGGTCTAATGACTCCAACTC 59.164 44.000 0.00 0.00 42.54 3.01
1285 1286 4.820775 AGCTCATTCCAGGATAGGTCTAA 58.179 43.478 0.00 0.00 0.00 2.10
1342 1343 2.158475 AGTTCAGGGTGCCAAGAAATGA 60.158 45.455 0.00 0.00 0.00 2.57
1371 1372 3.567478 ATCCTACCATCCAGCTTGTTC 57.433 47.619 0.00 0.00 0.00 3.18
1386 1387 4.610333 ACTGATGTGACTGTGGTATCCTA 58.390 43.478 0.00 0.00 0.00 2.94
1482 1483 7.099120 GTGCCTCATTTGGATTACTCAAATTT 58.901 34.615 0.00 0.00 41.28 1.82
1487 1488 4.299586 TGTGCCTCATTTGGATTACTCA 57.700 40.909 0.00 0.00 0.00 3.41
1488 1489 4.702131 ACTTGTGCCTCATTTGGATTACTC 59.298 41.667 0.00 0.00 0.00 2.59
1517 1518 2.168521 ACGTCCACATGATCCTTCGATT 59.831 45.455 0.00 0.00 0.00 3.34
1533 1534 7.043656 CCAACAAAGAGAAACAAAATAACGTCC 60.044 37.037 0.00 0.00 0.00 4.79
1560 1561 0.779997 ATCCAACTCCAAAGCCCACT 59.220 50.000 0.00 0.00 0.00 4.00
1572 1574 4.018960 AGAATACCTGCTGTGAATCCAACT 60.019 41.667 0.00 0.00 0.00 3.16
1606 1608 4.181309 GGAACCATTTGCCGATTTTACA 57.819 40.909 0.00 0.00 0.00 2.41
1668 1670 7.169982 CCAGTAATAGCAAGCATAACTGTACTC 59.830 40.741 12.50 0.00 32.84 2.59
1679 1681 1.490490 CCCCTCCAGTAATAGCAAGCA 59.510 52.381 0.00 0.00 0.00 3.91
1680 1682 1.202818 CCCCCTCCAGTAATAGCAAGC 60.203 57.143 0.00 0.00 0.00 4.01
1681 1683 1.202818 GCCCCCTCCAGTAATAGCAAG 60.203 57.143 0.00 0.00 0.00 4.01
1699 1701 5.758784 GGGTGACATCTTACAACTTATAGCC 59.241 44.000 0.00 0.00 0.00 3.93
1855 1920 6.779049 GGGGTCTTAACCTCCTTTTCTAAAAA 59.221 38.462 0.00 0.00 45.66 1.94
1856 1921 6.309357 GGGGTCTTAACCTCCTTTTCTAAAA 58.691 40.000 0.00 0.00 45.66 1.52
1857 1922 5.884322 GGGGTCTTAACCTCCTTTTCTAAA 58.116 41.667 0.00 0.00 45.66 1.85
1858 1923 5.509832 GGGGTCTTAACCTCCTTTTCTAA 57.490 43.478 0.00 0.00 45.66 2.10
1867 1932 2.588439 GCCGGGGGTCTTAACCTC 59.412 66.667 2.18 0.00 46.40 3.85
1868 1933 3.013327 GGCCGGGGGTCTTAACCT 61.013 66.667 2.18 0.00 45.66 3.50
1869 1934 3.013327 AGGCCGGGGGTCTTAACC 61.013 66.667 2.18 0.00 45.65 2.85
1870 1935 1.993948 AGAGGCCGGGGGTCTTAAC 60.994 63.158 2.18 0.00 38.01 2.01
1871 1936 1.993391 CAGAGGCCGGGGGTCTTAA 60.993 63.158 2.18 0.00 38.01 1.85
1872 1937 2.365105 CAGAGGCCGGGGGTCTTA 60.365 66.667 2.18 0.00 38.01 2.10
1878 1943 3.426309 ATTGATGCAGAGGCCGGGG 62.426 63.158 2.18 0.00 40.13 5.73
1879 1944 1.895707 GATTGATGCAGAGGCCGGG 60.896 63.158 2.18 0.00 40.13 5.73
1880 1945 2.249535 CGATTGATGCAGAGGCCGG 61.250 63.158 0.00 0.00 40.13 6.13
1881 1946 0.602106 ATCGATTGATGCAGAGGCCG 60.602 55.000 0.00 0.00 40.13 6.13
1882 1947 0.873054 CATCGATTGATGCAGAGGCC 59.127 55.000 10.05 0.00 45.06 5.19
1891 1956 2.025898 TGGTTGCATGCATCGATTGAT 58.974 42.857 23.37 0.00 34.28 2.57
1892 1957 1.461559 TGGTTGCATGCATCGATTGA 58.538 45.000 23.37 0.58 0.00 2.57
1893 1958 2.034179 AGATGGTTGCATGCATCGATTG 59.966 45.455 23.37 0.00 0.00 2.67
1894 1959 2.034179 CAGATGGTTGCATGCATCGATT 59.966 45.455 23.37 10.95 0.00 3.34
1895 1960 1.607148 CAGATGGTTGCATGCATCGAT 59.393 47.619 23.37 22.38 0.00 3.59
1896 1961 1.018910 CAGATGGTTGCATGCATCGA 58.981 50.000 23.37 18.42 0.00 3.59
1897 1962 0.736636 ACAGATGGTTGCATGCATCG 59.263 50.000 23.37 13.80 0.00 3.84
1898 1963 4.579454 AATACAGATGGTTGCATGCATC 57.421 40.909 23.37 20.66 0.00 3.91
1899 1964 6.659745 ATTAATACAGATGGTTGCATGCAT 57.340 33.333 23.37 6.15 0.00 3.96
1900 1965 6.468333 AATTAATACAGATGGTTGCATGCA 57.532 33.333 18.46 18.46 0.00 3.96
1901 1966 9.132521 GAATAATTAATACAGATGGTTGCATGC 57.867 33.333 11.82 11.82 0.00 4.06
1921 1986 9.736023 GTTCTTGTCAGACTTTTGTTGAATAAT 57.264 29.630 1.31 0.00 0.00 1.28
1922 1987 8.735315 TGTTCTTGTCAGACTTTTGTTGAATAA 58.265 29.630 1.31 0.00 0.00 1.40
1923 1988 8.275015 TGTTCTTGTCAGACTTTTGTTGAATA 57.725 30.769 1.31 0.00 0.00 1.75
1924 1989 7.156876 TGTTCTTGTCAGACTTTTGTTGAAT 57.843 32.000 1.31 0.00 0.00 2.57
1925 1990 6.567687 TGTTCTTGTCAGACTTTTGTTGAA 57.432 33.333 1.31 0.00 0.00 2.69
1926 1991 6.757897 ATGTTCTTGTCAGACTTTTGTTGA 57.242 33.333 1.31 0.00 0.00 3.18
1929 1994 9.725019 TCATATATGTTCTTGTCAGACTTTTGT 57.275 29.630 12.42 0.00 0.00 2.83
1932 1997 9.950496 ACTTCATATATGTTCTTGTCAGACTTT 57.050 29.630 12.42 0.00 0.00 2.66
1933 1998 9.593134 GACTTCATATATGTTCTTGTCAGACTT 57.407 33.333 12.42 0.00 0.00 3.01
1934 1999 8.753133 TGACTTCATATATGTTCTTGTCAGACT 58.247 33.333 12.42 0.00 0.00 3.24
1935 2000 8.812329 GTGACTTCATATATGTTCTTGTCAGAC 58.188 37.037 12.42 0.00 33.47 3.51
1936 2001 7.981789 GGTGACTTCATATATGTTCTTGTCAGA 59.018 37.037 12.42 0.00 33.47 3.27
1937 2002 7.225538 GGGTGACTTCATATATGTTCTTGTCAG 59.774 40.741 12.42 1.09 33.47 3.51
1938 2003 7.047891 GGGTGACTTCATATATGTTCTTGTCA 58.952 38.462 12.42 15.08 0.00 3.58
1939 2004 6.201044 CGGGTGACTTCATATATGTTCTTGTC 59.799 42.308 12.42 13.20 0.00 3.18
1940 2005 6.049149 CGGGTGACTTCATATATGTTCTTGT 58.951 40.000 12.42 5.78 0.00 3.16
1941 2006 6.280643 TCGGGTGACTTCATATATGTTCTTG 58.719 40.000 12.42 3.00 0.00 3.02
1942 2007 6.479972 TCGGGTGACTTCATATATGTTCTT 57.520 37.500 12.42 0.00 0.00 2.52
1943 2008 6.479972 TTCGGGTGACTTCATATATGTTCT 57.520 37.500 12.42 0.00 0.00 3.01
1944 2009 5.177696 GCTTCGGGTGACTTCATATATGTTC 59.822 44.000 12.42 8.29 0.00 3.18
1945 2010 5.057149 GCTTCGGGTGACTTCATATATGTT 58.943 41.667 12.42 0.00 0.00 2.71
1946 2011 4.503296 GGCTTCGGGTGACTTCATATATGT 60.503 45.833 12.42 0.00 0.00 2.29
1947 2012 3.997021 GGCTTCGGGTGACTTCATATATG 59.003 47.826 6.36 6.36 0.00 1.78
1948 2013 3.646162 TGGCTTCGGGTGACTTCATATAT 59.354 43.478 0.00 0.00 0.00 0.86
1949 2014 3.035363 TGGCTTCGGGTGACTTCATATA 58.965 45.455 0.00 0.00 0.00 0.86
1950 2015 1.837439 TGGCTTCGGGTGACTTCATAT 59.163 47.619 0.00 0.00 0.00 1.78
1951 2016 1.066430 GTGGCTTCGGGTGACTTCATA 60.066 52.381 0.00 0.00 0.00 2.15
1952 2017 0.321653 GTGGCTTCGGGTGACTTCAT 60.322 55.000 0.00 0.00 0.00 2.57
1953 2018 1.070786 GTGGCTTCGGGTGACTTCA 59.929 57.895 0.00 0.00 0.00 3.02
1954 2019 1.671379 GGTGGCTTCGGGTGACTTC 60.671 63.158 0.00 0.00 0.00 3.01
1955 2020 2.430367 GGTGGCTTCGGGTGACTT 59.570 61.111 0.00 0.00 0.00 3.01
1956 2021 2.847234 TGGTGGCTTCGGGTGACT 60.847 61.111 0.00 0.00 0.00 3.41
1957 2022 2.668550 GTGGTGGCTTCGGGTGAC 60.669 66.667 0.00 0.00 0.00 3.67
1958 2023 2.847234 AGTGGTGGCTTCGGGTGA 60.847 61.111 0.00 0.00 0.00 4.02
1959 2024 2.358737 GAGTGGTGGCTTCGGGTG 60.359 66.667 0.00 0.00 0.00 4.61
1960 2025 2.847234 TGAGTGGTGGCTTCGGGT 60.847 61.111 0.00 0.00 0.00 5.28
1961 2026 2.358737 GTGAGTGGTGGCTTCGGG 60.359 66.667 0.00 0.00 0.00 5.14
1962 2027 1.961277 GTGTGAGTGGTGGCTTCGG 60.961 63.158 0.00 0.00 0.00 4.30
1963 2028 1.961277 GGTGTGAGTGGTGGCTTCG 60.961 63.158 0.00 0.00 0.00 3.79
1964 2029 0.685097 TAGGTGTGAGTGGTGGCTTC 59.315 55.000 0.00 0.00 0.00 3.86
1965 2030 0.396811 GTAGGTGTGAGTGGTGGCTT 59.603 55.000 0.00 0.00 0.00 4.35
1966 2031 0.762842 TGTAGGTGTGAGTGGTGGCT 60.763 55.000 0.00 0.00 0.00 4.75
1967 2032 0.107831 TTGTAGGTGTGAGTGGTGGC 59.892 55.000 0.00 0.00 0.00 5.01
1968 2033 1.542547 GGTTGTAGGTGTGAGTGGTGG 60.543 57.143 0.00 0.00 0.00 4.61
1969 2034 1.416401 AGGTTGTAGGTGTGAGTGGTG 59.584 52.381 0.00 0.00 0.00 4.17
1970 2035 1.692519 GAGGTTGTAGGTGTGAGTGGT 59.307 52.381 0.00 0.00 0.00 4.16
1971 2036 1.336887 CGAGGTTGTAGGTGTGAGTGG 60.337 57.143 0.00 0.00 0.00 4.00
1972 2037 1.611977 TCGAGGTTGTAGGTGTGAGTG 59.388 52.381 0.00 0.00 0.00 3.51
1973 2038 1.991121 TCGAGGTTGTAGGTGTGAGT 58.009 50.000 0.00 0.00 0.00 3.41
1974 2039 4.713824 TTATCGAGGTTGTAGGTGTGAG 57.286 45.455 0.00 0.00 0.00 3.51
1975 2040 4.464951 ACATTATCGAGGTTGTAGGTGTGA 59.535 41.667 0.00 0.00 0.00 3.58
1976 2041 4.566759 CACATTATCGAGGTTGTAGGTGTG 59.433 45.833 0.00 0.00 0.00 3.82
1977 2042 4.382685 CCACATTATCGAGGTTGTAGGTGT 60.383 45.833 0.00 0.00 0.00 4.16
1978 2043 4.119862 CCACATTATCGAGGTTGTAGGTG 58.880 47.826 0.00 0.00 0.00 4.00
1979 2044 4.028131 TCCACATTATCGAGGTTGTAGGT 58.972 43.478 0.00 0.00 0.00 3.08
1980 2045 4.099573 ACTCCACATTATCGAGGTTGTAGG 59.900 45.833 0.00 0.00 0.00 3.18
1981 2046 5.043903 CACTCCACATTATCGAGGTTGTAG 58.956 45.833 0.00 0.00 0.00 2.74
1982 2047 4.679639 GCACTCCACATTATCGAGGTTGTA 60.680 45.833 0.00 0.00 0.00 2.41
1983 2048 3.861840 CACTCCACATTATCGAGGTTGT 58.138 45.455 0.00 0.00 0.00 3.32
1984 2049 2.609459 GCACTCCACATTATCGAGGTTG 59.391 50.000 0.00 0.00 0.00 3.77
1985 2050 2.501723 AGCACTCCACATTATCGAGGTT 59.498 45.455 0.00 0.00 0.00 3.50
1986 2051 2.101582 GAGCACTCCACATTATCGAGGT 59.898 50.000 0.00 0.00 0.00 3.85
1987 2052 2.363680 AGAGCACTCCACATTATCGAGG 59.636 50.000 0.00 0.00 0.00 4.63
1988 2053 3.067320 TGAGAGCACTCCACATTATCGAG 59.933 47.826 8.77 0.00 41.99 4.04
1989 2054 3.023832 TGAGAGCACTCCACATTATCGA 58.976 45.455 8.77 0.00 41.99 3.59
1990 2055 3.119291 GTGAGAGCACTCCACATTATCG 58.881 50.000 8.77 0.00 41.84 2.92
2002 2067 2.042464 TGATATGGGGAGTGAGAGCAC 58.958 52.381 0.00 0.00 45.49 4.40
2003 2068 2.477104 TGATATGGGGAGTGAGAGCA 57.523 50.000 0.00 0.00 0.00 4.26
2004 2069 3.845781 TTTGATATGGGGAGTGAGAGC 57.154 47.619 0.00 0.00 0.00 4.09
2005 2070 4.884164 GGTTTTTGATATGGGGAGTGAGAG 59.116 45.833 0.00 0.00 0.00 3.20
2006 2071 4.625324 CGGTTTTTGATATGGGGAGTGAGA 60.625 45.833 0.00 0.00 0.00 3.27
2007 2072 3.627577 CGGTTTTTGATATGGGGAGTGAG 59.372 47.826 0.00 0.00 0.00 3.51
2008 2073 3.616219 CGGTTTTTGATATGGGGAGTGA 58.384 45.455 0.00 0.00 0.00 3.41
2009 2074 2.687935 CCGGTTTTTGATATGGGGAGTG 59.312 50.000 0.00 0.00 0.00 3.51
2010 2075 2.310647 ACCGGTTTTTGATATGGGGAGT 59.689 45.455 0.00 0.00 0.00 3.85
2011 2076 2.687935 CACCGGTTTTTGATATGGGGAG 59.312 50.000 2.97 0.00 0.00 4.30
2012 2077 2.041891 ACACCGGTTTTTGATATGGGGA 59.958 45.455 2.97 0.00 0.00 4.81
2013 2078 2.425668 GACACCGGTTTTTGATATGGGG 59.574 50.000 2.97 0.00 0.00 4.96
2014 2079 2.096819 CGACACCGGTTTTTGATATGGG 59.903 50.000 2.97 0.00 0.00 4.00
2015 2080 2.745281 ACGACACCGGTTTTTGATATGG 59.255 45.455 2.97 0.00 40.78 2.74
2016 2081 3.682858 AGACGACACCGGTTTTTGATATG 59.317 43.478 2.97 0.00 40.78 1.78
2017 2082 3.682858 CAGACGACACCGGTTTTTGATAT 59.317 43.478 2.97 0.00 40.78 1.63
2018 2083 3.061322 CAGACGACACCGGTTTTTGATA 58.939 45.455 2.97 0.00 40.78 2.15
2019 2084 1.871039 CAGACGACACCGGTTTTTGAT 59.129 47.619 2.97 0.00 40.78 2.57
2020 2085 1.134759 TCAGACGACACCGGTTTTTGA 60.135 47.619 2.97 0.18 40.78 2.69
2021 2086 1.292061 TCAGACGACACCGGTTTTTG 58.708 50.000 2.97 0.62 40.78 2.44
2022 2087 2.140717 GATCAGACGACACCGGTTTTT 58.859 47.619 2.97 0.00 40.78 1.94
2023 2088 1.607251 GGATCAGACGACACCGGTTTT 60.607 52.381 2.97 0.00 40.78 2.43
2024 2089 0.037605 GGATCAGACGACACCGGTTT 60.038 55.000 2.97 0.00 40.78 3.27
2025 2090 1.183030 TGGATCAGACGACACCGGTT 61.183 55.000 2.97 0.00 40.78 4.44
2026 2091 0.970937 ATGGATCAGACGACACCGGT 60.971 55.000 0.00 0.00 40.78 5.28
2027 2092 0.249073 GATGGATCAGACGACACCGG 60.249 60.000 0.00 0.00 40.78 5.28
2028 2093 0.249073 GGATGGATCAGACGACACCG 60.249 60.000 0.00 0.00 42.50 4.94
2029 2094 0.824109 TGGATGGATCAGACGACACC 59.176 55.000 0.00 0.00 0.00 4.16
2030 2095 1.204704 TGTGGATGGATCAGACGACAC 59.795 52.381 0.00 0.00 0.00 3.67
2031 2096 1.555967 TGTGGATGGATCAGACGACA 58.444 50.000 0.00 0.00 0.00 4.35
2032 2097 2.898729 ATGTGGATGGATCAGACGAC 57.101 50.000 0.00 0.00 0.00 4.34
2033 2098 3.243401 CGTTATGTGGATGGATCAGACGA 60.243 47.826 0.00 0.00 31.36 4.20
2034 2099 3.052745 CGTTATGTGGATGGATCAGACG 58.947 50.000 0.00 0.00 0.00 4.18
2035 2100 4.060038 ACGTTATGTGGATGGATCAGAC 57.940 45.455 0.00 0.00 0.00 3.51
2036 2101 5.335661 CGATACGTTATGTGGATGGATCAGA 60.336 44.000 0.00 0.00 0.00 3.27
2037 2102 4.859245 CGATACGTTATGTGGATGGATCAG 59.141 45.833 0.00 0.00 0.00 2.90
2038 2103 4.321675 CCGATACGTTATGTGGATGGATCA 60.322 45.833 0.00 0.00 0.00 2.92
2039 2104 4.082408 TCCGATACGTTATGTGGATGGATC 60.082 45.833 0.00 0.00 0.00 3.36
2040 2105 3.830178 TCCGATACGTTATGTGGATGGAT 59.170 43.478 0.00 0.00 0.00 3.41
2041 2106 3.224269 TCCGATACGTTATGTGGATGGA 58.776 45.455 0.00 0.00 0.00 3.41
2042 2107 3.653539 TCCGATACGTTATGTGGATGG 57.346 47.619 0.00 0.00 0.00 3.51
2043 2108 3.739300 GGTTCCGATACGTTATGTGGATG 59.261 47.826 0.00 0.00 0.00 3.51
2044 2109 3.640029 AGGTTCCGATACGTTATGTGGAT 59.360 43.478 0.00 0.00 0.00 3.41
2045 2110 3.025978 AGGTTCCGATACGTTATGTGGA 58.974 45.455 0.00 0.00 0.00 4.02
2046 2111 3.447918 AGGTTCCGATACGTTATGTGG 57.552 47.619 0.00 0.00 0.00 4.17
2047 2112 4.923893 TGTAGGTTCCGATACGTTATGTG 58.076 43.478 0.00 0.00 0.00 3.21
2048 2113 4.037208 CCTGTAGGTTCCGATACGTTATGT 59.963 45.833 0.00 0.00 0.00 2.29
2049 2114 4.543692 CCTGTAGGTTCCGATACGTTATG 58.456 47.826 0.00 0.00 0.00 1.90
2050 2115 4.843220 CCTGTAGGTTCCGATACGTTAT 57.157 45.455 0.00 0.00 0.00 1.89
2064 2129 0.537143 TTTGCTGCACCACCTGTAGG 60.537 55.000 0.00 0.00 42.17 3.18
2065 2130 0.593128 GTTTGCTGCACCACCTGTAG 59.407 55.000 0.00 0.00 35.74 2.74
2066 2131 0.106967 TGTTTGCTGCACCACCTGTA 60.107 50.000 0.00 0.00 0.00 2.74
2067 2132 0.756442 ATGTTTGCTGCACCACCTGT 60.756 50.000 0.00 0.00 0.00 4.00
2068 2133 1.246649 TATGTTTGCTGCACCACCTG 58.753 50.000 0.00 0.00 0.00 4.00
2069 2134 1.993956 TTATGTTTGCTGCACCACCT 58.006 45.000 0.00 0.00 0.00 4.00
2070 2135 2.676076 CTTTATGTTTGCTGCACCACC 58.324 47.619 0.00 0.00 0.00 4.61
2071 2136 2.061028 GCTTTATGTTTGCTGCACCAC 58.939 47.619 0.00 2.71 0.00 4.16
2072 2137 1.335780 CGCTTTATGTTTGCTGCACCA 60.336 47.619 0.00 2.29 0.00 4.17
2073 2138 1.335872 ACGCTTTATGTTTGCTGCACC 60.336 47.619 0.00 0.00 0.00 5.01
2074 2139 2.050477 ACGCTTTATGTTTGCTGCAC 57.950 45.000 0.00 0.00 0.00 4.57
2075 2140 2.550180 TGTACGCTTTATGTTTGCTGCA 59.450 40.909 0.00 0.00 0.00 4.41
2076 2141 2.908626 GTGTACGCTTTATGTTTGCTGC 59.091 45.455 0.00 0.00 0.00 5.25
2077 2142 3.058570 TGGTGTACGCTTTATGTTTGCTG 60.059 43.478 6.35 0.00 0.00 4.41
2078 2143 3.058501 GTGGTGTACGCTTTATGTTTGCT 60.059 43.478 6.35 0.00 0.00 3.91
2079 2144 3.231160 GTGGTGTACGCTTTATGTTTGC 58.769 45.455 6.35 0.00 0.00 3.68
2080 2145 4.475763 TGTGGTGTACGCTTTATGTTTG 57.524 40.909 6.35 0.00 0.00 2.93
2081 2146 4.757657 TCATGTGGTGTACGCTTTATGTTT 59.242 37.500 6.35 0.00 0.00 2.83
2082 2147 4.320023 TCATGTGGTGTACGCTTTATGTT 58.680 39.130 6.35 0.00 0.00 2.71
2083 2148 3.932822 TCATGTGGTGTACGCTTTATGT 58.067 40.909 6.35 0.00 0.00 2.29
2084 2149 4.153296 TGTTCATGTGGTGTACGCTTTATG 59.847 41.667 6.35 8.33 31.37 1.90
2085 2150 4.153475 GTGTTCATGTGGTGTACGCTTTAT 59.847 41.667 6.35 0.00 36.18 1.40
2086 2151 3.495377 GTGTTCATGTGGTGTACGCTTTA 59.505 43.478 6.35 0.00 36.18 1.85
2087 2152 2.289547 GTGTTCATGTGGTGTACGCTTT 59.710 45.455 6.35 0.00 36.18 3.51
2088 2153 1.871039 GTGTTCATGTGGTGTACGCTT 59.129 47.619 6.35 0.00 36.18 4.68
2089 2154 1.508632 GTGTTCATGTGGTGTACGCT 58.491 50.000 6.35 0.00 36.18 5.07
2090 2155 0.162933 CGTGTTCATGTGGTGTACGC 59.837 55.000 0.00 0.00 35.87 4.42
2091 2156 1.454276 GACGTGTTCATGTGGTGTACG 59.546 52.381 0.00 0.00 37.05 3.67
2092 2157 1.454276 CGACGTGTTCATGTGGTGTAC 59.546 52.381 0.00 0.00 0.00 2.90
2093 2158 1.773410 CGACGTGTTCATGTGGTGTA 58.227 50.000 0.00 0.00 0.00 2.90
2094 2159 1.495584 GCGACGTGTTCATGTGGTGT 61.496 55.000 0.00 0.00 0.00 4.16
2095 2160 1.204062 GCGACGTGTTCATGTGGTG 59.796 57.895 0.00 0.00 0.00 4.17
2096 2161 2.307309 CGCGACGTGTTCATGTGGT 61.307 57.895 0.00 0.00 0.00 4.16
2097 2162 2.469847 CGCGACGTGTTCATGTGG 59.530 61.111 0.00 2.90 0.00 4.17
2098 2163 1.827315 AACCGCGACGTGTTCATGTG 61.827 55.000 8.23 0.00 0.00 3.21
2099 2164 1.593209 AACCGCGACGTGTTCATGT 60.593 52.632 8.23 0.00 0.00 3.21
2100 2165 1.154672 CAACCGCGACGTGTTCATG 60.155 57.895 8.23 0.00 0.00 3.07
2101 2166 2.950172 GCAACCGCGACGTGTTCAT 61.950 57.895 8.23 0.00 0.00 2.57
2117 2182 2.003937 TGAGGTGTGTACTAGTGGCA 57.996 50.000 5.39 1.52 0.00 4.92
2125 2190 2.812011 GGAATGGTGTTGAGGTGTGTAC 59.188 50.000 0.00 0.00 0.00 2.90
2131 2196 0.981183 TAGCGGAATGGTGTTGAGGT 59.019 50.000 0.00 0.00 0.00 3.85
2132 2197 2.009774 CTTAGCGGAATGGTGTTGAGG 58.990 52.381 0.00 0.00 0.00 3.86
2137 2202 1.903860 TGGTACTTAGCGGAATGGTGT 59.096 47.619 0.00 0.00 0.00 4.16
2144 2209 1.610554 GGCTGGTGGTACTTAGCGGA 61.611 60.000 11.22 0.00 37.05 5.54
2146 2211 1.518572 CGGCTGGTGGTACTTAGCG 60.519 63.158 0.00 0.00 37.05 4.26
2149 2214 0.604578 GTGTCGGCTGGTGGTACTTA 59.395 55.000 0.00 0.00 0.00 2.24
2182 2247 2.191354 TACGCACGACAGACCTTCCG 62.191 60.000 0.00 0.00 0.00 4.30
2229 2294 2.903357 CTGGCCGACAGGTGCTAT 59.097 61.111 0.00 0.00 43.70 2.97
2255 2320 1.470632 GGAGCTTCAGTGGAGATGTCG 60.471 57.143 1.33 0.00 0.00 4.35
2267 2332 0.321346 TCATCTTGCACGGAGCTTCA 59.679 50.000 0.00 0.00 45.94 3.02
2308 2373 1.375268 GGAGCAGCGCTTGAAGACT 60.375 57.895 7.50 0.00 39.88 3.24
2352 2419 1.672881 GATAGTGGCACTGCAATGTCC 59.327 52.381 29.65 0.00 0.00 4.02
2382 2449 1.486211 ACCCTAGGATCTGGTGTTCG 58.514 55.000 11.48 0.00 0.00 3.95
2441 2509 4.402056 TCCCTTGATTAAGTCATCGTCC 57.598 45.455 0.00 0.00 36.54 4.79
2449 2517 2.289195 TGCGTCGTTCCCTTGATTAAGT 60.289 45.455 0.00 0.00 31.80 2.24
2453 2521 0.320374 TCTGCGTCGTTCCCTTGATT 59.680 50.000 0.00 0.00 0.00 2.57
2519 2587 2.266055 GGCTGTGAGTCGGGGAAG 59.734 66.667 0.00 0.00 0.00 3.46
2520 2588 3.691342 CGGCTGTGAGTCGGGGAA 61.691 66.667 0.00 0.00 40.10 3.97
2551 2619 3.329889 TGGCTGGGTGCTCGGATT 61.330 61.111 0.00 0.00 42.39 3.01
2568 2645 3.314331 CAGAGGTGGTCGGCCTGT 61.314 66.667 7.97 0.00 36.29 4.00
2587 2664 1.323271 GGCGGTGGTCATCTCTCTCA 61.323 60.000 0.00 0.00 0.00 3.27
2590 2667 2.105128 CGGCGGTGGTCATCTCTC 59.895 66.667 0.00 0.00 0.00 3.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.