Multiple sequence alignment - TraesCS3B01G568900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G568900 chr3B 100.000 2423 0 0 1 2423 800981672 800984094 0.000000e+00 4475.0
1 TraesCS3B01G568900 chr3B 91.042 1708 100 20 750 2422 800990875 800992564 0.000000e+00 2257.0
2 TraesCS3B01G568900 chr3B 78.396 935 146 42 813 1711 799303289 799304203 7.570000e-155 556.0
3 TraesCS3B01G568900 chr3B 87.137 241 19 4 489 729 799302791 799303019 1.850000e-66 263.0
4 TraesCS3B01G568900 chr3B 83.889 180 29 0 995 1174 799110131 799109952 3.200000e-39 172.0
5 TraesCS3B01G568900 chr3A 74.741 772 156 28 955 1696 726749649 726748887 2.340000e-80 309.0
6 TraesCS3B01G568900 chr5B 84.071 226 24 2 112 325 15344531 15344306 8.780000e-50 207.0
7 TraesCS3B01G568900 chr4A 83.871 217 31 4 112 325 733994198 733994413 1.140000e-48 204.0
8 TraesCS3B01G568900 chr5D 83.186 226 25 7 112 325 495074161 495074385 6.840000e-46 195.0
9 TraesCS3B01G568900 chr7B 81.905 210 26 4 128 325 648467786 648467995 1.490000e-37 167.0
10 TraesCS3B01G568900 chr7A 82.955 176 26 2 112 283 3634140 3633965 3.230000e-34 156.0
11 TraesCS3B01G568900 chr2A 90.000 110 11 0 216 325 689802848 689802739 2.510000e-30 143.0
12 TraesCS3B01G568900 chr2A 84.884 86 12 1 241 325 761284791 761284876 4.290000e-13 86.1
13 TraesCS3B01G568900 chr7D 86.486 74 10 0 1543 1616 573460727 573460654 5.550000e-12 82.4
14 TraesCS3B01G568900 chr2B 87.879 66 6 2 1543 1607 677879208 677879144 2.580000e-10 76.8
15 TraesCS3B01G568900 chr4D 88.525 61 7 0 265 325 496880182 496880242 9.290000e-10 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G568900 chr3B 800981672 800984094 2422 False 4475.0 4475 100.0000 1 2423 1 chr3B.!!$F1 2422
1 TraesCS3B01G568900 chr3B 800990875 800992564 1689 False 2257.0 2257 91.0420 750 2422 1 chr3B.!!$F2 1672
2 TraesCS3B01G568900 chr3B 799302791 799304203 1412 False 409.5 556 82.7665 489 1711 2 chr3B.!!$F3 1222
3 TraesCS3B01G568900 chr3A 726748887 726749649 762 True 309.0 309 74.7410 955 1696 1 chr3A.!!$R1 741

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
291 292 0.038599 AACCACATTTACCGGTCCCC 59.961 55.0 12.4 0.0 30.91 4.81 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1908 2165 0.875059 GTGCAAAAGGAAGACTCGGG 59.125 55.0 0.0 0.0 0.0 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.517650 CTAGAATCGAGTGCCCCTTC 57.482 55.000 0.00 0.00 0.00 3.46
20 21 2.035632 CTAGAATCGAGTGCCCCTTCT 58.964 52.381 0.00 0.00 0.00 2.85
21 22 1.280457 AGAATCGAGTGCCCCTTCTT 58.720 50.000 0.00 0.00 0.00 2.52
22 23 1.065854 AGAATCGAGTGCCCCTTCTTG 60.066 52.381 0.00 0.00 0.00 3.02
23 24 0.678048 AATCGAGTGCCCCTTCTTGC 60.678 55.000 0.00 0.00 0.00 4.01
24 25 1.841302 ATCGAGTGCCCCTTCTTGCA 61.841 55.000 0.00 0.00 34.54 4.08
29 30 3.222287 TGCCCCTTCTTGCACTTTT 57.778 47.368 0.00 0.00 31.31 2.27
30 31 1.494960 TGCCCCTTCTTGCACTTTTT 58.505 45.000 0.00 0.00 31.31 1.94
110 111 8.445193 AAAATAAACGAGTAGTAGAACTCACG 57.555 34.615 5.00 0.00 45.13 4.35
111 112 6.974932 ATAAACGAGTAGTAGAACTCACGA 57.025 37.500 5.00 0.00 45.13 4.35
112 113 4.660352 AACGAGTAGTAGAACTCACGAC 57.340 45.455 5.00 0.00 45.13 4.34
113 114 2.999355 ACGAGTAGTAGAACTCACGACC 59.001 50.000 5.00 0.00 45.13 4.79
114 115 3.260740 CGAGTAGTAGAACTCACGACCT 58.739 50.000 5.00 0.00 45.13 3.85
115 116 3.306703 CGAGTAGTAGAACTCACGACCTC 59.693 52.174 5.00 0.00 45.13 3.85
116 117 4.252073 GAGTAGTAGAACTCACGACCTCA 58.748 47.826 0.00 0.00 44.41 3.86
117 118 4.002316 AGTAGTAGAACTCACGACCTCAC 58.998 47.826 0.00 0.00 0.00 3.51
118 119 2.860009 AGTAGAACTCACGACCTCACA 58.140 47.619 0.00 0.00 0.00 3.58
119 120 2.814919 AGTAGAACTCACGACCTCACAG 59.185 50.000 0.00 0.00 0.00 3.66
120 121 0.315568 AGAACTCACGACCTCACAGC 59.684 55.000 0.00 0.00 0.00 4.40
121 122 0.667792 GAACTCACGACCTCACAGCC 60.668 60.000 0.00 0.00 0.00 4.85
122 123 1.115930 AACTCACGACCTCACAGCCT 61.116 55.000 0.00 0.00 0.00 4.58
123 124 1.080230 CTCACGACCTCACAGCCTG 60.080 63.158 0.00 0.00 0.00 4.85
124 125 2.740055 CACGACCTCACAGCCTGC 60.740 66.667 0.00 0.00 0.00 4.85
125 126 4.363990 ACGACCTCACAGCCTGCG 62.364 66.667 0.00 0.00 0.00 5.18
129 130 4.435436 CCTCACAGCCTGCGCGTA 62.435 66.667 8.43 0.71 41.18 4.42
130 131 2.882777 CTCACAGCCTGCGCGTAG 60.883 66.667 17.98 17.98 41.18 3.51
131 132 3.342370 CTCACAGCCTGCGCGTAGA 62.342 63.158 26.43 3.43 41.18 2.59
132 133 3.181967 CACAGCCTGCGCGTAGAC 61.182 66.667 26.43 14.94 41.18 2.59
133 134 3.680786 ACAGCCTGCGCGTAGACA 61.681 61.111 26.43 4.72 41.18 3.41
134 135 2.432456 CAGCCTGCGCGTAGACAA 60.432 61.111 26.43 0.00 41.18 3.18
135 136 1.811266 CAGCCTGCGCGTAGACAAT 60.811 57.895 26.43 5.22 41.18 2.71
136 137 1.811266 AGCCTGCGCGTAGACAATG 60.811 57.895 26.43 9.40 41.18 2.82
137 138 2.100631 GCCTGCGCGTAGACAATGT 61.101 57.895 26.43 0.00 0.00 2.71
138 139 1.635663 GCCTGCGCGTAGACAATGTT 61.636 55.000 26.43 0.00 0.00 2.71
139 140 0.370273 CCTGCGCGTAGACAATGTTC 59.630 55.000 26.43 0.00 0.00 3.18
140 141 1.350193 CTGCGCGTAGACAATGTTCT 58.650 50.000 20.27 0.00 0.00 3.01
141 142 2.526077 CTGCGCGTAGACAATGTTCTA 58.474 47.619 20.27 0.00 0.00 2.10
142 143 2.256174 TGCGCGTAGACAATGTTCTAC 58.744 47.619 8.43 10.75 43.18 2.59
143 144 2.094906 TGCGCGTAGACAATGTTCTACT 60.095 45.455 8.43 1.01 44.05 2.57
144 145 3.127376 TGCGCGTAGACAATGTTCTACTA 59.873 43.478 8.43 0.22 44.05 1.82
145 146 4.100529 GCGCGTAGACAATGTTCTACTAA 58.899 43.478 8.43 0.00 44.05 2.24
146 147 4.560035 GCGCGTAGACAATGTTCTACTAAA 59.440 41.667 8.43 0.00 44.05 1.85
147 148 5.498226 GCGCGTAGACAATGTTCTACTAAAC 60.498 44.000 8.43 6.71 44.05 2.01
148 149 5.798934 CGCGTAGACAATGTTCTACTAAACT 59.201 40.000 15.57 0.00 44.05 2.66
149 150 6.963242 CGCGTAGACAATGTTCTACTAAACTA 59.037 38.462 15.57 0.00 44.05 2.24
150 151 7.163845 CGCGTAGACAATGTTCTACTAAACTAG 59.836 40.741 15.57 0.00 44.05 2.57
151 152 8.180267 GCGTAGACAATGTTCTACTAAACTAGA 58.820 37.037 15.57 0.00 44.05 2.43
154 155 8.989653 AGACAATGTTCTACTAAACTAGAAGC 57.010 34.615 0.00 0.00 34.14 3.86
155 156 8.808092 AGACAATGTTCTACTAAACTAGAAGCT 58.192 33.333 0.00 0.00 34.14 3.74
156 157 8.989653 ACAATGTTCTACTAAACTAGAAGCTC 57.010 34.615 0.00 0.00 34.14 4.09
157 158 8.808092 ACAATGTTCTACTAAACTAGAAGCTCT 58.192 33.333 0.00 0.00 34.14 4.09
158 159 9.646427 CAATGTTCTACTAAACTAGAAGCTCTT 57.354 33.333 0.00 0.00 34.14 2.85
161 162 9.477484 TGTTCTACTAAACTAGAAGCTCTTTTG 57.523 33.333 0.00 0.00 34.14 2.44
162 163 9.478768 GTTCTACTAAACTAGAAGCTCTTTTGT 57.521 33.333 0.00 0.00 34.14 2.83
163 164 9.477484 TTCTACTAAACTAGAAGCTCTTTTGTG 57.523 33.333 0.00 0.00 30.65 3.33
164 165 8.857098 TCTACTAAACTAGAAGCTCTTTTGTGA 58.143 33.333 0.00 0.00 0.00 3.58
165 166 9.646427 CTACTAAACTAGAAGCTCTTTTGTGAT 57.354 33.333 0.00 0.00 0.00 3.06
167 168 9.998106 ACTAAACTAGAAGCTCTTTTGTGATAA 57.002 29.630 0.00 0.00 0.00 1.75
183 184 9.982291 TTTTGTGATAAATATAAGTTCGACTGC 57.018 29.630 0.00 0.00 0.00 4.40
184 185 8.942338 TTGTGATAAATATAAGTTCGACTGCT 57.058 30.769 0.00 0.00 0.00 4.24
186 187 9.459640 TGTGATAAATATAAGTTCGACTGCTAC 57.540 33.333 0.00 0.00 0.00 3.58
187 188 8.913656 GTGATAAATATAAGTTCGACTGCTACC 58.086 37.037 0.00 0.00 0.00 3.18
188 189 8.857098 TGATAAATATAAGTTCGACTGCTACCT 58.143 33.333 0.00 0.00 0.00 3.08
194 195 5.708877 AAGTTCGACTGCTACCTATATCC 57.291 43.478 0.00 0.00 0.00 2.59
195 196 4.726583 AGTTCGACTGCTACCTATATCCA 58.273 43.478 0.00 0.00 0.00 3.41
196 197 5.326069 AGTTCGACTGCTACCTATATCCAT 58.674 41.667 0.00 0.00 0.00 3.41
197 198 5.775701 AGTTCGACTGCTACCTATATCCATT 59.224 40.000 0.00 0.00 0.00 3.16
198 199 6.267928 AGTTCGACTGCTACCTATATCCATTT 59.732 38.462 0.00 0.00 0.00 2.32
199 200 6.025749 TCGACTGCTACCTATATCCATTTG 57.974 41.667 0.00 0.00 0.00 2.32
200 201 5.773176 TCGACTGCTACCTATATCCATTTGA 59.227 40.000 0.00 0.00 0.00 2.69
201 202 6.266786 TCGACTGCTACCTATATCCATTTGAA 59.733 38.462 0.00 0.00 0.00 2.69
202 203 6.929049 CGACTGCTACCTATATCCATTTGAAA 59.071 38.462 0.00 0.00 0.00 2.69
203 204 7.604164 CGACTGCTACCTATATCCATTTGAAAT 59.396 37.037 0.00 0.00 0.00 2.17
204 205 9.944376 GACTGCTACCTATATCCATTTGAAATA 57.056 33.333 0.00 0.00 0.00 1.40
250 251 7.740519 ATAATTTTCCTTCGAAATTTGCTCG 57.259 32.000 0.00 0.00 37.81 5.03
251 252 4.822036 TTTTCCTTCGAAATTTGCTCGA 57.178 36.364 0.00 0.00 43.25 4.04
265 266 6.763303 ATTTGCTCGAAATTTTGTGGTAAC 57.237 33.333 5.33 0.00 29.22 2.50
266 267 4.231718 TGCTCGAAATTTTGTGGTAACC 57.768 40.909 5.33 0.00 0.00 2.85
267 268 3.632604 TGCTCGAAATTTTGTGGTAACCA 59.367 39.130 5.33 0.00 0.00 3.67
268 269 4.279671 TGCTCGAAATTTTGTGGTAACCAT 59.720 37.500 5.33 0.00 35.28 3.55
269 270 4.621034 GCTCGAAATTTTGTGGTAACCATG 59.379 41.667 5.33 0.00 35.28 3.66
270 271 5.127693 TCGAAATTTTGTGGTAACCATGG 57.872 39.130 11.19 11.19 35.28 3.66
271 272 4.585162 TCGAAATTTTGTGGTAACCATGGT 59.415 37.500 13.00 13.00 35.28 3.55
272 273 5.768662 TCGAAATTTTGTGGTAACCATGGTA 59.231 36.000 20.12 0.00 35.28 3.25
273 274 6.264744 TCGAAATTTTGTGGTAACCATGGTAA 59.735 34.615 20.12 6.35 35.28 2.85
274 275 6.363896 CGAAATTTTGTGGTAACCATGGTAAC 59.636 38.462 20.12 14.53 35.28 2.50
275 276 5.731957 ATTTTGTGGTAACCATGGTAACC 57.268 39.130 20.12 8.82 35.28 2.85
276 277 3.878237 TTGTGGTAACCATGGTAACCA 57.122 42.857 20.12 12.88 39.66 3.67
280 281 4.390129 TGGTAACCATGGTAACCACATT 57.610 40.909 20.12 1.68 37.09 2.71
281 282 4.742012 TGGTAACCATGGTAACCACATTT 58.258 39.130 20.12 0.84 37.09 2.32
282 283 5.888901 TGGTAACCATGGTAACCACATTTA 58.111 37.500 20.12 0.00 37.09 1.40
283 284 5.711036 TGGTAACCATGGTAACCACATTTAC 59.289 40.000 20.12 12.98 37.09 2.01
289 290 2.358957 GGTAACCACATTTACCGGTCC 58.641 52.381 12.40 0.00 41.25 4.46
290 291 2.358957 GTAACCACATTTACCGGTCCC 58.641 52.381 12.40 0.00 30.91 4.46
291 292 0.038599 AACCACATTTACCGGTCCCC 59.961 55.000 12.40 0.00 30.91 4.81
292 293 1.077285 CCACATTTACCGGTCCCCC 60.077 63.158 12.40 0.00 0.00 5.40
293 294 1.568118 CCACATTTACCGGTCCCCCT 61.568 60.000 12.40 0.00 0.00 4.79
294 295 0.107361 CACATTTACCGGTCCCCCTC 60.107 60.000 12.40 0.00 0.00 4.30
295 296 1.145377 CATTTACCGGTCCCCCTCG 59.855 63.158 12.40 0.00 0.00 4.63
296 297 1.002017 ATTTACCGGTCCCCCTCGA 59.998 57.895 12.40 0.00 0.00 4.04
297 298 0.399519 ATTTACCGGTCCCCCTCGAT 60.400 55.000 12.40 0.00 0.00 3.59
298 299 0.261402 TTTACCGGTCCCCCTCGATA 59.739 55.000 12.40 0.00 0.00 2.92
299 300 0.261402 TTACCGGTCCCCCTCGATAA 59.739 55.000 12.40 0.00 0.00 1.75
300 301 0.261402 TACCGGTCCCCCTCGATAAA 59.739 55.000 12.40 0.00 0.00 1.40
301 302 0.618393 ACCGGTCCCCCTCGATAAAA 60.618 55.000 0.00 0.00 0.00 1.52
302 303 0.542805 CCGGTCCCCCTCGATAAAAA 59.457 55.000 0.00 0.00 0.00 1.94
303 304 1.142262 CCGGTCCCCCTCGATAAAAAT 59.858 52.381 0.00 0.00 0.00 1.82
304 305 2.218603 CGGTCCCCCTCGATAAAAATG 58.781 52.381 0.00 0.00 0.00 2.32
305 306 1.954382 GGTCCCCCTCGATAAAAATGC 59.046 52.381 0.00 0.00 0.00 3.56
306 307 1.954382 GTCCCCCTCGATAAAAATGCC 59.046 52.381 0.00 0.00 0.00 4.40
307 308 1.133606 TCCCCCTCGATAAAAATGCCC 60.134 52.381 0.00 0.00 0.00 5.36
308 309 1.328279 CCCCTCGATAAAAATGCCCC 58.672 55.000 0.00 0.00 0.00 5.80
309 310 1.133482 CCCCTCGATAAAAATGCCCCT 60.133 52.381 0.00 0.00 0.00 4.79
310 311 2.666317 CCCTCGATAAAAATGCCCCTT 58.334 47.619 0.00 0.00 0.00 3.95
311 312 3.031013 CCCTCGATAAAAATGCCCCTTT 58.969 45.455 0.00 0.00 0.00 3.11
312 313 3.450817 CCCTCGATAAAAATGCCCCTTTT 59.549 43.478 0.00 0.00 0.00 2.27
313 314 4.432712 CCTCGATAAAAATGCCCCTTTTG 58.567 43.478 0.00 0.00 0.00 2.44
314 315 4.432712 CTCGATAAAAATGCCCCTTTTGG 58.567 43.478 0.00 0.00 39.97 3.28
315 316 3.835395 TCGATAAAAATGCCCCTTTTGGT 59.165 39.130 0.00 0.00 38.10 3.67
316 317 5.017490 TCGATAAAAATGCCCCTTTTGGTA 58.983 37.500 0.00 0.00 38.10 3.25
317 318 5.480772 TCGATAAAAATGCCCCTTTTGGTAA 59.519 36.000 0.00 0.00 38.10 2.85
318 319 5.579119 CGATAAAAATGCCCCTTTTGGTAAC 59.421 40.000 0.00 0.00 38.10 2.50
319 320 6.573485 CGATAAAAATGCCCCTTTTGGTAACT 60.573 38.462 0.00 0.00 38.10 2.24
320 321 7.363094 CGATAAAAATGCCCCTTTTGGTAACTA 60.363 37.037 0.00 0.00 38.10 2.24
321 322 6.502074 AAAAATGCCCCTTTTGGTAACTAA 57.498 33.333 0.00 0.00 38.10 2.24
322 323 6.502074 AAAATGCCCCTTTTGGTAACTAAA 57.498 33.333 0.00 0.00 38.99 1.85
323 324 6.502074 AAATGCCCCTTTTGGTAACTAAAA 57.498 33.333 0.00 0.00 40.71 1.52
324 325 4.940905 TGCCCCTTTTGGTAACTAAAAC 57.059 40.909 0.00 0.00 40.71 2.43
325 326 4.287552 TGCCCCTTTTGGTAACTAAAACA 58.712 39.130 0.00 0.00 40.71 2.83
326 327 4.099727 TGCCCCTTTTGGTAACTAAAACAC 59.900 41.667 0.00 0.00 40.71 3.32
327 328 4.342951 GCCCCTTTTGGTAACTAAAACACT 59.657 41.667 0.00 0.00 40.71 3.55
328 329 5.737922 GCCCCTTTTGGTAACTAAAACACTG 60.738 44.000 0.00 0.00 40.71 3.66
329 330 5.595133 CCCCTTTTGGTAACTAAAACACTGA 59.405 40.000 0.00 0.00 40.71 3.41
330 331 6.266786 CCCCTTTTGGTAACTAAAACACTGAT 59.733 38.462 0.00 0.00 40.71 2.90
331 332 7.201965 CCCCTTTTGGTAACTAAAACACTGATT 60.202 37.037 0.00 0.00 40.71 2.57
332 333 7.865889 CCCTTTTGGTAACTAAAACACTGATTC 59.134 37.037 0.00 0.00 40.71 2.52
333 334 8.630037 CCTTTTGGTAACTAAAACACTGATTCT 58.370 33.333 0.00 0.00 40.71 2.40
337 338 9.787435 TTGGTAACTAAAACACTGATTCTATGT 57.213 29.630 0.00 0.00 37.61 2.29
338 339 9.431887 TGGTAACTAAAACACTGATTCTATGTC 57.568 33.333 0.00 0.00 37.61 3.06
339 340 9.431887 GGTAACTAAAACACTGATTCTATGTCA 57.568 33.333 0.00 0.00 0.00 3.58
342 343 9.561069 AACTAAAACACTGATTCTATGTCAACT 57.439 29.630 0.00 0.00 0.00 3.16
343 344 9.209175 ACTAAAACACTGATTCTATGTCAACTC 57.791 33.333 0.00 0.00 0.00 3.01
344 345 9.208022 CTAAAACACTGATTCTATGTCAACTCA 57.792 33.333 0.00 0.00 0.00 3.41
345 346 8.627208 AAAACACTGATTCTATGTCAACTCAT 57.373 30.769 0.00 0.00 0.00 2.90
346 347 7.840342 AACACTGATTCTATGTCAACTCATC 57.160 36.000 0.00 0.00 0.00 2.92
347 348 6.939622 ACACTGATTCTATGTCAACTCATCA 58.060 36.000 0.00 0.00 0.00 3.07
348 349 7.389232 ACACTGATTCTATGTCAACTCATCAA 58.611 34.615 0.00 0.00 0.00 2.57
349 350 7.879677 ACACTGATTCTATGTCAACTCATCAAA 59.120 33.333 0.00 0.00 0.00 2.69
350 351 8.724229 CACTGATTCTATGTCAACTCATCAAAA 58.276 33.333 0.00 0.00 0.00 2.44
351 352 9.458727 ACTGATTCTATGTCAACTCATCAAAAT 57.541 29.630 0.00 0.00 0.00 1.82
354 355 8.922058 ATTCTATGTCAACTCATCAAAATTGC 57.078 30.769 0.00 0.00 0.00 3.56
355 356 6.855836 TCTATGTCAACTCATCAAAATTGCC 58.144 36.000 0.00 0.00 0.00 4.52
356 357 5.733620 ATGTCAACTCATCAAAATTGCCT 57.266 34.783 0.00 0.00 0.00 4.75
357 358 6.839124 ATGTCAACTCATCAAAATTGCCTA 57.161 33.333 0.00 0.00 0.00 3.93
358 359 6.647334 TGTCAACTCATCAAAATTGCCTAA 57.353 33.333 0.00 0.00 0.00 2.69
359 360 6.446318 TGTCAACTCATCAAAATTGCCTAAC 58.554 36.000 0.00 0.00 0.00 2.34
360 361 6.265196 TGTCAACTCATCAAAATTGCCTAACT 59.735 34.615 0.00 0.00 0.00 2.24
361 362 6.583806 GTCAACTCATCAAAATTGCCTAACTG 59.416 38.462 0.00 0.00 0.00 3.16
362 363 5.649782 ACTCATCAAAATTGCCTAACTGG 57.350 39.130 0.00 0.00 39.35 4.00
375 376 3.748083 CCTAACTGGCATGCATGATAGT 58.252 45.455 30.64 26.04 0.00 2.12
376 377 4.898320 CCTAACTGGCATGCATGATAGTA 58.102 43.478 30.64 17.17 0.00 1.82
377 378 5.308014 CCTAACTGGCATGCATGATAGTAA 58.692 41.667 30.64 9.62 0.00 2.24
378 379 5.180117 CCTAACTGGCATGCATGATAGTAAC 59.820 44.000 30.64 10.15 0.00 2.50
379 380 4.428294 ACTGGCATGCATGATAGTAACT 57.572 40.909 30.64 8.04 0.00 2.24
380 381 5.551305 ACTGGCATGCATGATAGTAACTA 57.449 39.130 30.64 7.44 0.00 2.24
381 382 6.119240 ACTGGCATGCATGATAGTAACTAT 57.881 37.500 30.64 7.04 0.00 2.12
382 383 5.936372 ACTGGCATGCATGATAGTAACTATG 59.064 40.000 30.64 0.23 0.00 2.23
383 384 6.112927 TGGCATGCATGATAGTAACTATGA 57.887 37.500 30.64 0.00 0.00 2.15
384 385 6.714278 TGGCATGCATGATAGTAACTATGAT 58.286 36.000 30.64 0.00 0.00 2.45
385 386 7.850193 TGGCATGCATGATAGTAACTATGATA 58.150 34.615 30.64 0.00 0.00 2.15
386 387 7.765819 TGGCATGCATGATAGTAACTATGATAC 59.234 37.037 30.64 5.71 0.00 2.24
387 388 7.984050 GGCATGCATGATAGTAACTATGATACT 59.016 37.037 30.64 0.00 37.39 2.12
388 389 9.376075 GCATGCATGATAGTAACTATGATACTT 57.624 33.333 30.64 0.00 35.34 2.24
400 401 9.778993 GTAACTATGATACTTTCACTACGTTCA 57.221 33.333 0.00 0.00 37.11 3.18
401 402 8.912787 AACTATGATACTTTCACTACGTTCAG 57.087 34.615 0.00 0.00 37.11 3.02
402 403 8.053026 ACTATGATACTTTCACTACGTTCAGT 57.947 34.615 0.00 0.00 37.11 3.41
403 404 8.182881 ACTATGATACTTTCACTACGTTCAGTC 58.817 37.037 0.00 0.00 37.11 3.51
404 405 6.570672 TGATACTTTCACTACGTTCAGTCT 57.429 37.500 0.00 0.00 0.00 3.24
405 406 6.978338 TGATACTTTCACTACGTTCAGTCTT 58.022 36.000 0.00 0.00 0.00 3.01
406 407 8.102800 TGATACTTTCACTACGTTCAGTCTTA 57.897 34.615 0.00 0.00 0.00 2.10
407 408 8.570488 TGATACTTTCACTACGTTCAGTCTTAA 58.430 33.333 0.00 0.00 0.00 1.85
408 409 9.570488 GATACTTTCACTACGTTCAGTCTTAAT 57.430 33.333 0.00 0.00 0.00 1.40
409 410 7.870588 ACTTTCACTACGTTCAGTCTTAATC 57.129 36.000 0.00 0.00 0.00 1.75
410 411 7.431249 ACTTTCACTACGTTCAGTCTTAATCA 58.569 34.615 0.00 0.00 0.00 2.57
411 412 8.088981 ACTTTCACTACGTTCAGTCTTAATCAT 58.911 33.333 0.00 0.00 0.00 2.45
412 413 7.812309 TTCACTACGTTCAGTCTTAATCATG 57.188 36.000 0.00 0.00 0.00 3.07
413 414 6.920817 TCACTACGTTCAGTCTTAATCATGT 58.079 36.000 0.00 0.00 0.00 3.21
414 415 6.806739 TCACTACGTTCAGTCTTAATCATGTG 59.193 38.462 0.00 0.00 0.00 3.21
415 416 6.806739 CACTACGTTCAGTCTTAATCATGTGA 59.193 38.462 0.00 0.00 0.00 3.58
416 417 7.489435 CACTACGTTCAGTCTTAATCATGTGAT 59.511 37.037 0.00 0.00 36.07 3.06
417 418 6.893958 ACGTTCAGTCTTAATCATGTGATC 57.106 37.500 0.00 0.00 32.75 2.92
418 419 5.812642 ACGTTCAGTCTTAATCATGTGATCC 59.187 40.000 0.00 0.00 32.75 3.36
419 420 6.045318 CGTTCAGTCTTAATCATGTGATCCT 58.955 40.000 0.00 0.00 32.75 3.24
420 421 7.147897 ACGTTCAGTCTTAATCATGTGATCCTA 60.148 37.037 0.00 0.00 32.75 2.94
421 422 7.706607 CGTTCAGTCTTAATCATGTGATCCTAA 59.293 37.037 0.00 0.00 32.75 2.69
422 423 9.039870 GTTCAGTCTTAATCATGTGATCCTAAG 57.960 37.037 7.61 7.61 32.75 2.18
423 424 8.311395 TCAGTCTTAATCATGTGATCCTAAGT 57.689 34.615 11.40 0.00 31.57 2.24
424 425 8.762645 TCAGTCTTAATCATGTGATCCTAAGTT 58.237 33.333 11.40 0.00 31.57 2.66
425 426 9.039870 CAGTCTTAATCATGTGATCCTAAGTTC 57.960 37.037 11.40 8.13 31.57 3.01
426 427 8.762645 AGTCTTAATCATGTGATCCTAAGTTCA 58.237 33.333 11.40 0.00 31.57 3.18
427 428 9.553064 GTCTTAATCATGTGATCCTAAGTTCAT 57.447 33.333 11.40 0.00 31.57 2.57
430 431 9.904198 TTAATCATGTGATCCTAAGTTCATTGA 57.096 29.630 0.00 0.00 32.75 2.57
431 432 7.798596 ATCATGTGATCCTAAGTTCATTGAC 57.201 36.000 0.00 0.00 0.00 3.18
432 433 5.812127 TCATGTGATCCTAAGTTCATTGACG 59.188 40.000 0.00 0.00 0.00 4.35
433 434 3.932710 TGTGATCCTAAGTTCATTGACGC 59.067 43.478 0.00 0.00 0.00 5.19
434 435 3.309954 GTGATCCTAAGTTCATTGACGCC 59.690 47.826 0.00 0.00 0.00 5.68
435 436 2.004583 TCCTAAGTTCATTGACGCCG 57.995 50.000 0.00 0.00 0.00 6.46
436 437 1.006832 CCTAAGTTCATTGACGCCGG 58.993 55.000 0.00 0.00 0.00 6.13
437 438 1.674817 CCTAAGTTCATTGACGCCGGT 60.675 52.381 1.90 0.00 0.00 5.28
438 439 1.393539 CTAAGTTCATTGACGCCGGTG 59.606 52.381 14.93 14.93 0.00 4.94
439 440 1.234615 AAGTTCATTGACGCCGGTGG 61.235 55.000 21.14 6.53 0.00 4.61
440 441 2.359354 TTCATTGACGCCGGTGGG 60.359 61.111 21.14 3.67 0.00 4.61
450 451 3.006728 CCGGTGGGCCTTAGTGGA 61.007 66.667 4.53 0.00 38.35 4.02
451 452 2.267961 CGGTGGGCCTTAGTGGAC 59.732 66.667 4.53 0.00 45.48 4.02
461 462 5.718724 GGCCTTAGTGGACGTACTATTAT 57.281 43.478 0.00 0.00 38.35 1.28
462 463 6.094193 GGCCTTAGTGGACGTACTATTATT 57.906 41.667 0.00 0.00 38.35 1.40
463 464 6.519382 GGCCTTAGTGGACGTACTATTATTT 58.481 40.000 0.00 0.00 38.35 1.40
464 465 6.988580 GGCCTTAGTGGACGTACTATTATTTT 59.011 38.462 0.00 0.00 38.35 1.82
465 466 7.496920 GGCCTTAGTGGACGTACTATTATTTTT 59.503 37.037 0.00 0.00 38.35 1.94
466 467 8.333186 GCCTTAGTGGACGTACTATTATTTTTG 58.667 37.037 0.00 0.00 38.35 2.44
467 468 9.374838 CCTTAGTGGACGTACTATTATTTTTGT 57.625 33.333 0.00 0.00 38.35 2.83
469 470 7.605410 AGTGGACGTACTATTATTTTTGTGG 57.395 36.000 0.00 0.00 0.00 4.17
470 471 6.093082 AGTGGACGTACTATTATTTTTGTGGC 59.907 38.462 0.00 0.00 0.00 5.01
471 472 6.093082 GTGGACGTACTATTATTTTTGTGGCT 59.907 38.462 0.00 0.00 0.00 4.75
472 473 6.092944 TGGACGTACTATTATTTTTGTGGCTG 59.907 38.462 0.00 0.00 0.00 4.85
473 474 6.314400 GGACGTACTATTATTTTTGTGGCTGA 59.686 38.462 0.00 0.00 0.00 4.26
474 475 7.148373 GGACGTACTATTATTTTTGTGGCTGAA 60.148 37.037 0.00 0.00 0.00 3.02
475 476 8.101654 ACGTACTATTATTTTTGTGGCTGAAA 57.898 30.769 0.00 0.00 0.00 2.69
476 477 8.736244 ACGTACTATTATTTTTGTGGCTGAAAT 58.264 29.630 0.00 0.00 0.00 2.17
485 486 8.831715 ATTTTTGTGGCTGAAATAAGTTAAGG 57.168 30.769 0.00 0.00 0.00 2.69
486 487 6.969993 TTTGTGGCTGAAATAAGTTAAGGT 57.030 33.333 0.00 0.00 0.00 3.50
487 488 5.957842 TGTGGCTGAAATAAGTTAAGGTG 57.042 39.130 0.00 0.00 0.00 4.00
495 496 8.903820 GCTGAAATAAGTTAAGGTGGATATGTT 58.096 33.333 0.00 0.00 0.00 2.71
543 544 8.531622 TGAATTACCTCGTTTAATCGTTTGTA 57.468 30.769 5.88 4.13 0.00 2.41
586 587 6.512342 CGATTAGACGGAGACCCTATAAAT 57.488 41.667 0.00 0.00 0.00 1.40
587 588 6.553524 CGATTAGACGGAGACCCTATAAATC 58.446 44.000 0.00 0.00 0.00 2.17
592 593 3.646637 ACGGAGACCCTATAAATCCAAGG 59.353 47.826 0.00 0.00 0.00 3.61
605 606 1.048601 TCCAAGGGTCGCCATCTATC 58.951 55.000 0.00 0.00 0.00 2.08
621 622 4.209154 TCTATCCTTCCCGAAACCCTAT 57.791 45.455 0.00 0.00 0.00 2.57
631 632 4.534897 TCCCGAAACCCTATTTCTTCTTCT 59.465 41.667 0.00 0.00 0.00 2.85
633 634 5.816258 CCCGAAACCCTATTTCTTCTTCTAC 59.184 44.000 0.00 0.00 0.00 2.59
640 641 8.993404 ACCCTATTTCTTCTTCTACTACGTAT 57.007 34.615 0.00 0.00 0.00 3.06
700 701 1.027792 TCGACGTCGATCCATCCACA 61.028 55.000 34.97 10.59 44.22 4.17
724 725 1.615392 AGGTACGTACGGAGCTGTTTT 59.385 47.619 30.22 7.00 35.18 2.43
725 726 1.723003 GGTACGTACGGAGCTGTTTTG 59.277 52.381 22.10 0.00 0.00 2.44
726 727 1.125566 GTACGTACGGAGCTGTTTTGC 59.874 52.381 21.06 0.00 0.00 3.68
727 728 1.226030 ACGTACGGAGCTGTTTTGCC 61.226 55.000 21.06 0.00 0.00 4.52
728 729 0.949105 CGTACGGAGCTGTTTTGCCT 60.949 55.000 7.57 0.00 0.00 4.75
729 730 1.670674 CGTACGGAGCTGTTTTGCCTA 60.671 52.381 7.57 0.00 0.00 3.93
730 731 2.629051 GTACGGAGCTGTTTTGCCTAT 58.371 47.619 0.00 0.00 0.00 2.57
731 732 1.739067 ACGGAGCTGTTTTGCCTATC 58.261 50.000 0.00 0.00 0.00 2.08
732 733 1.279271 ACGGAGCTGTTTTGCCTATCT 59.721 47.619 0.00 0.00 0.00 1.98
733 734 2.500098 ACGGAGCTGTTTTGCCTATCTA 59.500 45.455 0.00 0.00 0.00 1.98
734 735 3.134804 ACGGAGCTGTTTTGCCTATCTAT 59.865 43.478 0.00 0.00 0.00 1.98
735 736 4.344102 ACGGAGCTGTTTTGCCTATCTATA 59.656 41.667 0.00 0.00 0.00 1.31
736 737 4.686554 CGGAGCTGTTTTGCCTATCTATAC 59.313 45.833 0.00 0.00 0.00 1.47
737 738 5.509840 CGGAGCTGTTTTGCCTATCTATACT 60.510 44.000 0.00 0.00 0.00 2.12
738 739 6.294564 CGGAGCTGTTTTGCCTATCTATACTA 60.295 42.308 0.00 0.00 0.00 1.82
739 740 6.869388 GGAGCTGTTTTGCCTATCTATACTAC 59.131 42.308 0.00 0.00 0.00 2.73
740 741 7.256012 GGAGCTGTTTTGCCTATCTATACTACT 60.256 40.741 0.00 0.00 0.00 2.57
741 742 8.707796 AGCTGTTTTGCCTATCTATACTACTA 57.292 34.615 0.00 0.00 0.00 1.82
742 743 8.798402 AGCTGTTTTGCCTATCTATACTACTAG 58.202 37.037 0.00 0.00 0.00 2.57
743 744 8.578151 GCTGTTTTGCCTATCTATACTACTAGT 58.422 37.037 0.00 0.00 0.00 2.57
771 772 3.181490 CCTCGTTCATATTCCTCGTGTGA 60.181 47.826 0.00 0.00 0.00 3.58
773 774 5.006153 TCGTTCATATTCCTCGTGTGATT 57.994 39.130 0.00 0.00 0.00 2.57
778 836 5.836347 TCATATTCCTCGTGTGATTCTCAG 58.164 41.667 0.00 0.00 0.00 3.35
781 839 2.723273 TCCTCGTGTGATTCTCAGCTA 58.277 47.619 0.00 0.00 0.00 3.32
877 1096 7.838079 ATGCATCTGACTACTAGATTTCTCT 57.162 36.000 0.00 0.00 32.75 3.10
878 1097 8.932434 ATGCATCTGACTACTAGATTTCTCTA 57.068 34.615 0.00 0.00 32.75 2.43
879 1098 8.753497 TGCATCTGACTACTAGATTTCTCTAA 57.247 34.615 0.00 0.00 33.59 2.10
893 1116 5.464030 TTTCTCTAAGTTACTTCTGCGGT 57.536 39.130 0.00 0.00 0.00 5.68
940 1166 4.149396 GTGCGATTGTTCTACAACGTACTT 59.851 41.667 18.19 0.00 41.40 2.24
941 1167 4.746115 TGCGATTGTTCTACAACGTACTTT 59.254 37.500 0.00 0.00 41.40 2.66
942 1168 5.919707 TGCGATTGTTCTACAACGTACTTTA 59.080 36.000 0.00 0.00 41.40 1.85
943 1169 6.587226 TGCGATTGTTCTACAACGTACTTTAT 59.413 34.615 0.00 0.00 41.40 1.40
944 1170 7.754475 TGCGATTGTTCTACAACGTACTTTATA 59.246 33.333 0.00 0.00 41.40 0.98
945 1171 8.749499 GCGATTGTTCTACAACGTACTTTATAT 58.251 33.333 0.00 0.00 41.40 0.86
985 1211 2.140065 GCTGGTGCTCTTTGGTTTTC 57.860 50.000 0.00 0.00 36.03 2.29
1023 1252 8.776728 ACAATGTATGTTTTGGTCAAGAACCCA 61.777 37.037 0.00 0.00 43.42 4.51
1044 1273 1.111116 CCGGTAGGACAATCCGCCTA 61.111 60.000 0.00 0.00 42.75 3.93
1074 1303 5.829391 CCATGAATCAGATACATTGGGTTCA 59.171 40.000 0.00 0.00 0.00 3.18
1087 1318 1.901159 TGGGTTCAATCAAGGCAATGG 59.099 47.619 0.00 0.00 0.00 3.16
1101 1332 2.905996 AATGGTCCAGGAGCGGCAA 61.906 57.895 14.10 0.00 32.15 4.52
1107 1338 0.980754 TCCAGGAGCGGCAATTCCTA 60.981 55.000 8.74 0.00 41.86 2.94
1176 1407 2.756207 CAACATCCAGCATGAATCCACA 59.244 45.455 0.00 0.00 39.69 4.17
1253 1487 3.367743 CCCCCTCGACGTCGACAA 61.368 66.667 34.97 16.80 44.22 3.18
1353 1587 2.586792 GGCAAGCGACTGGAGGAT 59.413 61.111 0.00 0.00 0.00 3.24
1358 1592 1.617947 AAGCGACTGGAGGATGGGAC 61.618 60.000 0.00 0.00 0.00 4.46
1427 1680 3.646534 TCCTAGAGGAGACATGATGCAA 58.353 45.455 0.00 0.00 39.78 4.08
1487 1740 2.354704 CGAGGTTGGGAGCTTTGATACA 60.355 50.000 0.00 0.00 32.79 2.29
1537 1790 3.046374 AGATGAAATACGCCCCTTACCT 58.954 45.455 0.00 0.00 0.00 3.08
1635 1888 5.505181 AGACTGTATCCTTCATTTGGTGT 57.495 39.130 0.00 0.00 0.00 4.16
1742 1999 8.910944 TGCTACCAGTTAAACTATCCTAGTAAG 58.089 37.037 0.00 0.00 38.26 2.34
1756 2013 9.962809 CTATCCTAGTAAGCAGTACCTTAGTAT 57.037 37.037 6.81 0.00 34.44 2.12
1772 2029 6.267928 ACCTTAGTATCGCTCCACTCATATTT 59.732 38.462 0.00 0.00 0.00 1.40
1781 2038 5.118990 GCTCCACTCATATTTCTTGCACTA 58.881 41.667 0.00 0.00 0.00 2.74
1802 2059 6.090358 CACTACCGTGTTATCAGTAAAACTGG 59.910 42.308 7.18 0.00 40.13 4.00
1803 2060 4.320870 ACCGTGTTATCAGTAAAACTGGG 58.679 43.478 7.18 1.82 45.94 4.45
1805 2062 5.011943 ACCGTGTTATCAGTAAAACTGGGTA 59.988 40.000 7.18 0.00 45.94 3.69
1873 2130 5.133221 AGGTTAATGTGTTGAGTGCTTCTT 58.867 37.500 0.00 0.00 0.00 2.52
1902 2159 8.622948 ACCTGTCAAGAGGAAATTTAGTTTAG 57.377 34.615 0.00 0.00 36.51 1.85
1903 2160 7.175119 ACCTGTCAAGAGGAAATTTAGTTTAGC 59.825 37.037 0.00 0.00 36.51 3.09
1908 2165 7.390718 TCAAGAGGAAATTTAGTTTAGCAGTCC 59.609 37.037 0.00 0.00 0.00 3.85
1910 2167 5.262009 AGGAAATTTAGTTTAGCAGTCCCC 58.738 41.667 0.00 0.00 0.00 4.81
1918 2175 1.183549 TTAGCAGTCCCCGAGTCTTC 58.816 55.000 0.00 0.00 0.00 2.87
1920 2177 1.985116 GCAGTCCCCGAGTCTTCCT 60.985 63.158 0.00 0.00 0.00 3.36
1929 2186 2.154462 CCGAGTCTTCCTTTTGCACAT 58.846 47.619 0.00 0.00 0.00 3.21
1977 2234 3.281727 TGTGTTTCCTCTATGCCATCC 57.718 47.619 0.00 0.00 0.00 3.51
2000 2257 1.270550 GTCCAAAGCATGACAACCTGG 59.729 52.381 0.00 0.00 0.00 4.45
2001 2258 0.037975 CCAAAGCATGACAACCTGGC 60.038 55.000 0.00 0.00 0.00 4.85
2003 2260 0.823356 AAAGCATGACAACCTGGCGT 60.823 50.000 0.00 0.00 0.00 5.68
2011 2268 0.895100 ACAACCTGGCGTGATTGCAT 60.895 50.000 5.07 0.00 36.28 3.96
2020 2278 3.254411 TGGCGTGATTGCATGTCTTTTAA 59.746 39.130 0.00 0.00 36.60 1.52
2080 2338 4.132122 AGGTGATTCCAAGTTGGGATTT 57.868 40.909 21.85 0.00 35.35 2.17
2101 2359 6.783708 TTTAGGTTTGGAAATCAGTGTTGT 57.216 33.333 0.00 0.00 0.00 3.32
2112 2370 9.513906 TGGAAATCAGTGTTGTAATCAAATCTA 57.486 29.630 0.00 0.00 35.20 1.98
2150 2408 7.718753 CCTTAATTGCATTATGAAGAGGAGAGT 59.281 37.037 0.00 0.00 0.00 3.24
2170 2428 7.989741 GGAGAGTTCATCCAGATAATGAAGAAA 59.010 37.037 0.00 0.00 42.23 2.52
2171 2429 8.961294 AGAGTTCATCCAGATAATGAAGAAAG 57.039 34.615 0.00 0.00 42.23 2.62
2178 2436 5.306937 TCCAGATAATGAAGAAAGCCGGATA 59.693 40.000 5.05 0.00 0.00 2.59
2200 2458 5.471556 ACAAAATCCAGACATCAATGCAA 57.528 34.783 0.00 0.00 0.00 4.08
2226 2484 2.237392 CCTTGCTAAACTAGGCCTGAGT 59.763 50.000 17.99 12.18 34.40 3.41
2235 2493 1.331138 CTAGGCCTGAGTCGTCGTTAG 59.669 57.143 17.99 0.00 0.00 2.34
2253 2511 4.625742 CGTTAGACAATCCAAACGATCACT 59.374 41.667 7.81 0.00 45.59 3.41
2256 2514 5.407407 AGACAATCCAAACGATCACTAGT 57.593 39.130 0.00 0.00 0.00 2.57
2263 2521 2.370281 AACGATCACTAGTGCACCTG 57.630 50.000 18.45 9.26 0.00 4.00
2298 2557 0.817013 TCCCTTGCAATTTCATCGCC 59.183 50.000 0.00 0.00 0.00 5.54
2299 2558 0.531657 CCCTTGCAATTTCATCGCCA 59.468 50.000 0.00 0.00 0.00 5.69
2305 2564 1.657094 GCAATTTCATCGCCAAAGCAG 59.343 47.619 0.00 0.00 39.83 4.24
2317 2576 1.211457 CCAAAGCAGCTAGGGATCACT 59.789 52.381 1.44 1.44 0.00 3.41
2340 2599 3.909086 GACCACACCAGGGCAGAGC 62.909 68.421 0.00 0.00 36.38 4.09
2343 2602 1.603842 CACACCAGGGCAGAGCATA 59.396 57.895 0.00 0.00 0.00 3.14
2350 2609 1.142465 CAGGGCAGAGCATATCCAACT 59.858 52.381 0.00 0.00 0.00 3.16
2409 2668 5.222337 GGGGTGTCCAGATAATTTATGGGAT 60.222 44.000 8.77 0.00 34.71 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.035632 AGAAGGGGCACTCGATTCTAG 58.964 52.381 0.00 0.00 0.00 2.43
1 2 2.160721 AGAAGGGGCACTCGATTCTA 57.839 50.000 0.00 0.00 0.00 2.10
2 3 1.065854 CAAGAAGGGGCACTCGATTCT 60.066 52.381 0.00 0.00 0.00 2.40
3 4 1.373570 CAAGAAGGGGCACTCGATTC 58.626 55.000 0.00 0.00 0.00 2.52
4 5 0.678048 GCAAGAAGGGGCACTCGATT 60.678 55.000 0.00 0.00 0.00 3.34
5 6 1.078143 GCAAGAAGGGGCACTCGAT 60.078 57.895 0.00 0.00 0.00 3.59
6 7 2.347490 GCAAGAAGGGGCACTCGA 59.653 61.111 0.00 0.00 0.00 4.04
7 8 2.032528 TGCAAGAAGGGGCACTCG 59.967 61.111 0.00 0.00 34.58 4.18
11 12 1.494960 AAAAAGTGCAAGAAGGGGCA 58.505 45.000 0.00 0.00 37.77 5.36
84 85 8.909671 CGTGAGTTCTACTACTCGTTTATTTTT 58.090 33.333 0.00 0.00 46.00 1.94
85 86 8.292448 TCGTGAGTTCTACTACTCGTTTATTTT 58.708 33.333 0.00 0.00 46.00 1.82
86 87 7.748241 GTCGTGAGTTCTACTACTCGTTTATTT 59.252 37.037 0.00 0.00 46.00 1.40
87 88 7.239972 GTCGTGAGTTCTACTACTCGTTTATT 58.760 38.462 0.00 0.00 46.00 1.40
88 89 6.183360 GGTCGTGAGTTCTACTACTCGTTTAT 60.183 42.308 0.00 0.00 46.00 1.40
89 90 5.120830 GGTCGTGAGTTCTACTACTCGTTTA 59.879 44.000 0.00 0.00 46.00 2.01
90 91 4.083590 GGTCGTGAGTTCTACTACTCGTTT 60.084 45.833 0.00 0.00 46.00 3.60
91 92 3.434984 GGTCGTGAGTTCTACTACTCGTT 59.565 47.826 0.00 0.00 46.00 3.85
92 93 2.999355 GGTCGTGAGTTCTACTACTCGT 59.001 50.000 0.00 0.00 46.00 4.18
93 94 3.260740 AGGTCGTGAGTTCTACTACTCG 58.739 50.000 0.00 0.00 46.00 4.18
94 95 4.093261 GTGAGGTCGTGAGTTCTACTACTC 59.907 50.000 0.00 0.00 43.86 2.59
95 96 4.002316 GTGAGGTCGTGAGTTCTACTACT 58.998 47.826 0.00 0.00 0.00 2.57
96 97 3.750130 TGTGAGGTCGTGAGTTCTACTAC 59.250 47.826 0.00 0.00 0.00 2.73
97 98 4.001652 CTGTGAGGTCGTGAGTTCTACTA 58.998 47.826 0.00 0.00 0.00 1.82
98 99 2.814919 CTGTGAGGTCGTGAGTTCTACT 59.185 50.000 0.00 0.00 0.00 2.57
99 100 2.668834 GCTGTGAGGTCGTGAGTTCTAC 60.669 54.545 0.00 0.00 0.00 2.59
100 101 1.540267 GCTGTGAGGTCGTGAGTTCTA 59.460 52.381 0.00 0.00 0.00 2.10
101 102 0.315568 GCTGTGAGGTCGTGAGTTCT 59.684 55.000 0.00 0.00 0.00 3.01
102 103 0.667792 GGCTGTGAGGTCGTGAGTTC 60.668 60.000 0.00 0.00 0.00 3.01
103 104 1.115930 AGGCTGTGAGGTCGTGAGTT 61.116 55.000 0.00 0.00 0.00 3.01
104 105 1.531840 AGGCTGTGAGGTCGTGAGT 60.532 57.895 0.00 0.00 0.00 3.41
105 106 1.080230 CAGGCTGTGAGGTCGTGAG 60.080 63.158 6.28 0.00 0.00 3.51
106 107 3.051210 CAGGCTGTGAGGTCGTGA 58.949 61.111 6.28 0.00 0.00 4.35
107 108 2.740055 GCAGGCTGTGAGGTCGTG 60.740 66.667 17.16 0.00 0.00 4.35
108 109 4.363990 CGCAGGCTGTGAGGTCGT 62.364 66.667 23.25 0.00 0.00 4.34
112 113 4.435436 TACGCGCAGGCTGTGAGG 62.435 66.667 30.87 22.16 36.88 3.86
113 114 2.882777 CTACGCGCAGGCTGTGAG 60.883 66.667 30.87 28.69 36.88 3.51
114 115 3.370231 TCTACGCGCAGGCTGTGA 61.370 61.111 30.87 9.93 36.88 3.58
115 116 3.181967 GTCTACGCGCAGGCTGTG 61.182 66.667 23.30 23.30 36.88 3.66
116 117 2.507110 ATTGTCTACGCGCAGGCTGT 62.507 55.000 17.16 0.00 36.88 4.40
117 118 1.811266 ATTGTCTACGCGCAGGCTG 60.811 57.895 12.88 10.94 36.88 4.85
118 119 1.811266 CATTGTCTACGCGCAGGCT 60.811 57.895 12.88 0.00 36.88 4.58
119 120 1.635663 AACATTGTCTACGCGCAGGC 61.636 55.000 5.73 4.44 0.00 4.85
120 121 0.370273 GAACATTGTCTACGCGCAGG 59.630 55.000 5.73 0.00 0.00 4.85
121 122 1.350193 AGAACATTGTCTACGCGCAG 58.650 50.000 5.73 1.58 0.00 5.18
122 123 2.256174 GTAGAACATTGTCTACGCGCA 58.744 47.619 5.73 0.00 40.37 6.09
123 124 2.973155 GTAGAACATTGTCTACGCGC 57.027 50.000 5.73 0.00 40.37 6.86
129 130 8.808092 AGCTTCTAGTTTAGTAGAACATTGTCT 58.192 33.333 3.48 0.00 34.69 3.41
130 131 8.989653 AGCTTCTAGTTTAGTAGAACATTGTC 57.010 34.615 3.48 0.00 34.69 3.18
131 132 8.808092 AGAGCTTCTAGTTTAGTAGAACATTGT 58.192 33.333 3.48 0.00 34.69 2.71
132 133 9.646427 AAGAGCTTCTAGTTTAGTAGAACATTG 57.354 33.333 3.48 0.00 34.69 2.82
135 136 9.477484 CAAAAGAGCTTCTAGTTTAGTAGAACA 57.523 33.333 3.48 0.00 34.69 3.18
136 137 9.478768 ACAAAAGAGCTTCTAGTTTAGTAGAAC 57.521 33.333 3.48 2.50 34.69 3.01
137 138 9.477484 CACAAAAGAGCTTCTAGTTTAGTAGAA 57.523 33.333 6.81 6.81 36.81 2.10
138 139 8.857098 TCACAAAAGAGCTTCTAGTTTAGTAGA 58.143 33.333 0.00 0.00 0.00 2.59
139 140 9.646427 ATCACAAAAGAGCTTCTAGTTTAGTAG 57.354 33.333 0.00 0.00 0.00 2.57
141 142 9.998106 TTATCACAAAAGAGCTTCTAGTTTAGT 57.002 29.630 0.00 0.00 0.00 2.24
157 158 9.982291 GCAGTCGAACTTATATTTATCACAAAA 57.018 29.630 0.00 0.00 0.00 2.44
158 159 9.378551 AGCAGTCGAACTTATATTTATCACAAA 57.621 29.630 0.00 0.00 0.00 2.83
159 160 8.942338 AGCAGTCGAACTTATATTTATCACAA 57.058 30.769 0.00 0.00 0.00 3.33
160 161 9.459640 GTAGCAGTCGAACTTATATTTATCACA 57.540 33.333 0.00 0.00 0.00 3.58
161 162 8.913656 GGTAGCAGTCGAACTTATATTTATCAC 58.086 37.037 0.00 0.00 0.00 3.06
162 163 8.857098 AGGTAGCAGTCGAACTTATATTTATCA 58.143 33.333 0.00 0.00 0.00 2.15
168 169 9.122779 GGATATAGGTAGCAGTCGAACTTATAT 57.877 37.037 7.98 7.98 33.54 0.86
169 170 8.105197 TGGATATAGGTAGCAGTCGAACTTATA 58.895 37.037 0.00 0.00 0.00 0.98
170 171 6.946583 TGGATATAGGTAGCAGTCGAACTTAT 59.053 38.462 0.00 0.00 0.00 1.73
171 172 6.301486 TGGATATAGGTAGCAGTCGAACTTA 58.699 40.000 0.00 0.00 0.00 2.24
172 173 5.138276 TGGATATAGGTAGCAGTCGAACTT 58.862 41.667 0.00 0.00 0.00 2.66
173 174 4.726583 TGGATATAGGTAGCAGTCGAACT 58.273 43.478 0.00 0.00 0.00 3.01
174 175 5.646577 ATGGATATAGGTAGCAGTCGAAC 57.353 43.478 0.00 0.00 0.00 3.95
175 176 6.266786 TCAAATGGATATAGGTAGCAGTCGAA 59.733 38.462 0.00 0.00 0.00 3.71
176 177 5.773176 TCAAATGGATATAGGTAGCAGTCGA 59.227 40.000 0.00 0.00 0.00 4.20
177 178 6.025749 TCAAATGGATATAGGTAGCAGTCG 57.974 41.667 0.00 0.00 0.00 4.18
178 179 8.854614 ATTTCAAATGGATATAGGTAGCAGTC 57.145 34.615 0.00 0.00 0.00 3.51
224 225 9.284594 CGAGCAAATTTCGAAGGAAAATTATAA 57.715 29.630 0.00 0.00 44.76 0.98
225 226 8.670135 TCGAGCAAATTTCGAAGGAAAATTATA 58.330 29.630 0.00 0.00 44.76 0.98
226 227 7.535139 TCGAGCAAATTTCGAAGGAAAATTAT 58.465 30.769 0.00 0.00 44.76 1.28
227 228 6.904498 TCGAGCAAATTTCGAAGGAAAATTA 58.096 32.000 0.00 0.00 44.76 1.40
228 229 5.768317 TCGAGCAAATTTCGAAGGAAAATT 58.232 33.333 0.00 0.00 44.76 1.82
229 230 5.371115 TCGAGCAAATTTCGAAGGAAAAT 57.629 34.783 0.00 0.00 44.76 1.82
230 231 4.822036 TCGAGCAAATTTCGAAGGAAAA 57.178 36.364 0.00 0.00 44.76 2.29
241 242 6.201997 GGTTACCACAAAATTTCGAGCAAATT 59.798 34.615 0.00 0.00 45.15 1.82
242 243 5.694458 GGTTACCACAAAATTTCGAGCAAAT 59.306 36.000 0.00 0.00 36.12 2.32
243 244 5.044558 GGTTACCACAAAATTTCGAGCAAA 58.955 37.500 0.00 0.00 0.00 3.68
244 245 4.098044 TGGTTACCACAAAATTTCGAGCAA 59.902 37.500 0.00 0.00 0.00 3.91
245 246 3.632604 TGGTTACCACAAAATTTCGAGCA 59.367 39.130 0.00 0.00 0.00 4.26
246 247 4.231718 TGGTTACCACAAAATTTCGAGC 57.768 40.909 0.00 0.00 0.00 5.03
247 248 5.160641 CCATGGTTACCACAAAATTTCGAG 58.839 41.667 6.10 0.00 35.80 4.04
248 249 4.585162 ACCATGGTTACCACAAAATTTCGA 59.415 37.500 13.00 0.00 35.80 3.71
249 250 4.877282 ACCATGGTTACCACAAAATTTCG 58.123 39.130 13.00 0.00 35.80 3.46
250 251 6.647481 GGTTACCATGGTTACCACAAAATTTC 59.353 38.462 36.85 13.96 44.45 2.17
251 252 6.526526 GGTTACCATGGTTACCACAAAATTT 58.473 36.000 36.85 7.49 44.45 1.82
252 253 6.104146 GGTTACCATGGTTACCACAAAATT 57.896 37.500 36.85 7.91 44.45 1.82
253 254 5.731957 GGTTACCATGGTTACCACAAAAT 57.268 39.130 36.85 8.11 44.45 1.82
260 261 6.198650 GTAAATGTGGTTACCATGGTTACC 57.801 41.667 35.83 35.83 45.06 2.85
269 270 2.358957 GGACCGGTAAATGTGGTTACC 58.641 52.381 7.34 0.00 46.54 2.85
270 271 2.358957 GGGACCGGTAAATGTGGTTAC 58.641 52.381 7.34 0.00 35.75 2.50
271 272 1.281577 GGGGACCGGTAAATGTGGTTA 59.718 52.381 7.34 0.00 40.86 2.85
272 273 0.038599 GGGGACCGGTAAATGTGGTT 59.961 55.000 7.34 0.00 40.86 3.67
273 274 1.687014 GGGGACCGGTAAATGTGGT 59.313 57.895 7.34 0.00 40.86 4.16
274 275 4.649845 GGGGACCGGTAAATGTGG 57.350 61.111 7.34 0.00 40.86 4.17
286 287 1.954382 GGCATTTTTATCGAGGGGGAC 59.046 52.381 0.00 0.00 0.00 4.46
287 288 1.133606 GGGCATTTTTATCGAGGGGGA 60.134 52.381 0.00 0.00 0.00 4.81
288 289 1.328279 GGGCATTTTTATCGAGGGGG 58.672 55.000 0.00 0.00 0.00 5.40
289 290 1.133482 AGGGGCATTTTTATCGAGGGG 60.133 52.381 0.00 0.00 0.00 4.79
290 291 2.364972 AGGGGCATTTTTATCGAGGG 57.635 50.000 0.00 0.00 0.00 4.30
291 292 4.432712 CAAAAGGGGCATTTTTATCGAGG 58.567 43.478 0.00 0.00 30.01 4.63
292 293 4.081697 ACCAAAAGGGGCATTTTTATCGAG 60.082 41.667 0.00 0.00 42.91 4.04
293 294 3.835395 ACCAAAAGGGGCATTTTTATCGA 59.165 39.130 0.00 0.00 42.91 3.59
294 295 4.200838 ACCAAAAGGGGCATTTTTATCG 57.799 40.909 0.00 0.00 42.91 2.92
295 296 6.707290 AGTTACCAAAAGGGGCATTTTTATC 58.293 36.000 0.00 0.00 42.91 1.75
296 297 6.696042 AGTTACCAAAAGGGGCATTTTTAT 57.304 33.333 0.00 0.00 42.91 1.40
297 298 7.613551 TTAGTTACCAAAAGGGGCATTTTTA 57.386 32.000 0.00 0.00 42.91 1.52
298 299 6.502074 TTAGTTACCAAAAGGGGCATTTTT 57.498 33.333 0.00 0.00 42.91 1.94
299 300 6.502074 TTTAGTTACCAAAAGGGGCATTTT 57.498 33.333 0.00 0.00 42.91 1.82
300 301 6.126739 TGTTTTAGTTACCAAAAGGGGCATTT 60.127 34.615 0.00 0.00 42.91 2.32
301 302 5.367060 TGTTTTAGTTACCAAAAGGGGCATT 59.633 36.000 0.00 0.00 42.91 3.56
302 303 4.902448 TGTTTTAGTTACCAAAAGGGGCAT 59.098 37.500 0.00 0.00 42.91 4.40
303 304 4.099727 GTGTTTTAGTTACCAAAAGGGGCA 59.900 41.667 0.00 0.00 42.91 5.36
304 305 4.342951 AGTGTTTTAGTTACCAAAAGGGGC 59.657 41.667 0.00 0.00 42.91 5.80
305 306 5.595133 TCAGTGTTTTAGTTACCAAAAGGGG 59.405 40.000 0.00 0.00 42.91 4.79
306 307 6.702716 TCAGTGTTTTAGTTACCAAAAGGG 57.297 37.500 0.00 0.00 44.81 3.95
307 308 8.630037 AGAATCAGTGTTTTAGTTACCAAAAGG 58.370 33.333 0.00 0.00 0.00 3.11
311 312 9.787435 ACATAGAATCAGTGTTTTAGTTACCAA 57.213 29.630 0.00 0.00 0.00 3.67
312 313 9.431887 GACATAGAATCAGTGTTTTAGTTACCA 57.568 33.333 0.00 0.00 0.00 3.25
313 314 9.431887 TGACATAGAATCAGTGTTTTAGTTACC 57.568 33.333 0.00 0.00 0.00 2.85
316 317 9.561069 AGTTGACATAGAATCAGTGTTTTAGTT 57.439 29.630 0.00 0.00 0.00 2.24
317 318 9.209175 GAGTTGACATAGAATCAGTGTTTTAGT 57.791 33.333 0.00 0.00 0.00 2.24
318 319 9.208022 TGAGTTGACATAGAATCAGTGTTTTAG 57.792 33.333 0.00 0.00 0.00 1.85
319 320 9.725019 ATGAGTTGACATAGAATCAGTGTTTTA 57.275 29.630 0.00 0.00 0.00 1.52
320 321 8.627208 ATGAGTTGACATAGAATCAGTGTTTT 57.373 30.769 0.00 0.00 0.00 2.43
321 322 7.879677 TGATGAGTTGACATAGAATCAGTGTTT 59.120 33.333 0.00 0.00 0.00 2.83
322 323 7.389232 TGATGAGTTGACATAGAATCAGTGTT 58.611 34.615 0.00 0.00 0.00 3.32
323 324 6.939622 TGATGAGTTGACATAGAATCAGTGT 58.060 36.000 0.00 0.00 0.00 3.55
324 325 7.838771 TTGATGAGTTGACATAGAATCAGTG 57.161 36.000 0.00 0.00 0.00 3.66
325 326 8.853077 TTTTGATGAGTTGACATAGAATCAGT 57.147 30.769 0.00 0.00 0.00 3.41
328 329 9.017669 GCAATTTTGATGAGTTGACATAGAATC 57.982 33.333 0.00 0.00 0.00 2.52
329 330 7.977853 GGCAATTTTGATGAGTTGACATAGAAT 59.022 33.333 0.00 0.00 30.03 2.40
330 331 7.177216 AGGCAATTTTGATGAGTTGACATAGAA 59.823 33.333 0.00 0.00 32.02 2.10
331 332 6.660521 AGGCAATTTTGATGAGTTGACATAGA 59.339 34.615 0.00 0.00 32.02 1.98
332 333 6.860080 AGGCAATTTTGATGAGTTGACATAG 58.140 36.000 0.00 0.00 32.02 2.23
333 334 6.839124 AGGCAATTTTGATGAGTTGACATA 57.161 33.333 0.00 0.00 32.02 2.29
334 335 5.733620 AGGCAATTTTGATGAGTTGACAT 57.266 34.783 0.00 0.00 32.02 3.06
335 336 6.265196 AGTTAGGCAATTTTGATGAGTTGACA 59.735 34.615 0.00 0.00 32.02 3.58
336 337 6.583806 CAGTTAGGCAATTTTGATGAGTTGAC 59.416 38.462 0.00 0.00 0.00 3.18
337 338 6.294675 CCAGTTAGGCAATTTTGATGAGTTGA 60.295 38.462 0.00 0.00 0.00 3.18
338 339 5.865552 CCAGTTAGGCAATTTTGATGAGTTG 59.134 40.000 0.00 0.00 0.00 3.16
339 340 6.029346 CCAGTTAGGCAATTTTGATGAGTT 57.971 37.500 0.00 0.00 0.00 3.01
340 341 5.649782 CCAGTTAGGCAATTTTGATGAGT 57.350 39.130 0.00 0.00 0.00 3.41
354 355 3.748083 ACTATCATGCATGCCAGTTAGG 58.252 45.455 22.25 7.95 41.84 2.69
355 356 5.994054 AGTTACTATCATGCATGCCAGTTAG 59.006 40.000 27.36 20.24 0.00 2.34
356 357 5.928976 AGTTACTATCATGCATGCCAGTTA 58.071 37.500 27.36 19.99 0.00 2.24
357 358 4.785301 AGTTACTATCATGCATGCCAGTT 58.215 39.130 27.36 14.23 0.00 3.16
358 359 4.428294 AGTTACTATCATGCATGCCAGT 57.572 40.909 26.18 26.18 0.00 4.00
359 360 6.168389 TCATAGTTACTATCATGCATGCCAG 58.832 40.000 22.25 20.79 0.00 4.85
360 361 6.112927 TCATAGTTACTATCATGCATGCCA 57.887 37.500 22.25 10.55 0.00 4.92
361 362 7.984050 AGTATCATAGTTACTATCATGCATGCC 59.016 37.037 22.25 3.53 0.00 4.40
362 363 8.939201 AGTATCATAGTTACTATCATGCATGC 57.061 34.615 22.25 11.82 0.00 4.06
374 375 9.778993 TGAACGTAGTGAAAGTATCATAGTTAC 57.221 33.333 0.00 0.00 45.00 2.50
375 376 9.999009 CTGAACGTAGTGAAAGTATCATAGTTA 57.001 33.333 0.00 0.00 45.00 2.24
376 377 8.521176 ACTGAACGTAGTGAAAGTATCATAGTT 58.479 33.333 0.00 0.00 45.00 2.24
377 378 8.053026 ACTGAACGTAGTGAAAGTATCATAGT 57.947 34.615 0.00 0.00 45.00 2.12
378 379 8.399425 AGACTGAACGTAGTGAAAGTATCATAG 58.601 37.037 0.00 0.00 45.00 2.23
379 380 8.277490 AGACTGAACGTAGTGAAAGTATCATA 57.723 34.615 0.00 0.00 45.00 2.15
380 381 7.159322 AGACTGAACGTAGTGAAAGTATCAT 57.841 36.000 0.00 0.00 45.00 2.45
381 382 6.570672 AGACTGAACGTAGTGAAAGTATCA 57.429 37.500 0.00 0.00 45.00 2.15
382 383 8.961294 TTAAGACTGAACGTAGTGAAAGTATC 57.039 34.615 0.00 0.00 45.00 2.24
383 384 9.570488 GATTAAGACTGAACGTAGTGAAAGTAT 57.430 33.333 0.00 0.00 45.00 2.12
384 385 8.570488 TGATTAAGACTGAACGTAGTGAAAGTA 58.430 33.333 0.00 0.00 45.00 2.24
385 386 7.431249 TGATTAAGACTGAACGTAGTGAAAGT 58.569 34.615 0.00 0.00 45.00 2.66
386 387 7.869016 TGATTAAGACTGAACGTAGTGAAAG 57.131 36.000 0.00 0.00 45.00 2.62
387 388 7.870954 ACATGATTAAGACTGAACGTAGTGAAA 59.129 33.333 0.00 0.00 45.00 2.69
388 389 7.328493 CACATGATTAAGACTGAACGTAGTGAA 59.672 37.037 0.00 0.00 45.00 3.18
389 390 6.806739 CACATGATTAAGACTGAACGTAGTGA 59.193 38.462 0.00 0.00 45.00 3.41
390 391 6.806739 TCACATGATTAAGACTGAACGTAGTG 59.193 38.462 0.00 0.00 45.00 2.74
391 392 7.702772 GATCACATGATTAAGACTGAACGTAGT 59.297 37.037 0.00 0.00 37.30 2.73
392 393 7.168302 GGATCACATGATTAAGACTGAACGTAG 59.832 40.741 0.00 0.00 34.37 3.51
393 394 6.978659 GGATCACATGATTAAGACTGAACGTA 59.021 38.462 0.00 0.00 34.37 3.57
394 395 5.812642 GGATCACATGATTAAGACTGAACGT 59.187 40.000 0.00 0.00 34.37 3.99
395 396 6.045318 AGGATCACATGATTAAGACTGAACG 58.955 40.000 0.00 0.00 34.37 3.95
396 397 8.948631 TTAGGATCACATGATTAAGACTGAAC 57.051 34.615 0.00 0.00 34.37 3.18
397 398 8.762645 ACTTAGGATCACATGATTAAGACTGAA 58.237 33.333 15.51 0.00 32.87 3.02
398 399 8.311395 ACTTAGGATCACATGATTAAGACTGA 57.689 34.615 15.51 0.00 32.87 3.41
399 400 8.954950 AACTTAGGATCACATGATTAAGACTG 57.045 34.615 15.51 0.00 32.87 3.51
400 401 8.762645 TGAACTTAGGATCACATGATTAAGACT 58.237 33.333 15.51 6.45 32.87 3.24
401 402 8.948631 TGAACTTAGGATCACATGATTAAGAC 57.051 34.615 15.51 11.02 32.87 3.01
404 405 9.904198 TCAATGAACTTAGGATCACATGATTAA 57.096 29.630 0.00 0.00 34.37 1.40
405 406 9.330063 GTCAATGAACTTAGGATCACATGATTA 57.670 33.333 0.00 0.00 34.37 1.75
406 407 7.011763 CGTCAATGAACTTAGGATCACATGATT 59.988 37.037 0.00 0.00 34.37 2.57
407 408 6.481313 CGTCAATGAACTTAGGATCACATGAT 59.519 38.462 0.00 0.00 37.51 2.45
408 409 5.812127 CGTCAATGAACTTAGGATCACATGA 59.188 40.000 0.00 0.00 0.00 3.07
409 410 5.503031 GCGTCAATGAACTTAGGATCACATG 60.503 44.000 0.00 0.00 0.00 3.21
410 411 4.572389 GCGTCAATGAACTTAGGATCACAT 59.428 41.667 0.00 0.00 0.00 3.21
411 412 3.932710 GCGTCAATGAACTTAGGATCACA 59.067 43.478 0.00 0.00 0.00 3.58
412 413 3.309954 GGCGTCAATGAACTTAGGATCAC 59.690 47.826 0.00 0.00 0.00 3.06
413 414 3.531538 GGCGTCAATGAACTTAGGATCA 58.468 45.455 0.00 0.00 0.00 2.92
414 415 2.540101 CGGCGTCAATGAACTTAGGATC 59.460 50.000 0.00 0.00 0.00 3.36
415 416 2.550978 CGGCGTCAATGAACTTAGGAT 58.449 47.619 0.00 0.00 0.00 3.24
416 417 1.404986 CCGGCGTCAATGAACTTAGGA 60.405 52.381 6.01 0.00 0.00 2.94
417 418 1.006832 CCGGCGTCAATGAACTTAGG 58.993 55.000 6.01 0.00 0.00 2.69
418 419 1.393539 CACCGGCGTCAATGAACTTAG 59.606 52.381 6.01 0.00 0.00 2.18
419 420 1.434555 CACCGGCGTCAATGAACTTA 58.565 50.000 6.01 0.00 0.00 2.24
420 421 1.234615 CCACCGGCGTCAATGAACTT 61.235 55.000 6.01 0.00 0.00 2.66
421 422 1.671054 CCACCGGCGTCAATGAACT 60.671 57.895 6.01 0.00 0.00 3.01
422 423 2.686816 CCCACCGGCGTCAATGAAC 61.687 63.158 6.01 0.00 0.00 3.18
423 424 2.359354 CCCACCGGCGTCAATGAA 60.359 61.111 6.01 0.00 0.00 2.57
433 434 3.006728 TCCACTAAGGCCCACCGG 61.007 66.667 0.00 0.00 42.76 5.28
434 435 2.267961 GTCCACTAAGGCCCACCG 59.732 66.667 0.00 0.00 42.76 4.94
435 436 1.259840 TACGTCCACTAAGGCCCACC 61.260 60.000 0.00 0.00 37.29 4.61
436 437 0.108472 GTACGTCCACTAAGGCCCAC 60.108 60.000 0.00 0.00 37.29 4.61
437 438 0.251922 AGTACGTCCACTAAGGCCCA 60.252 55.000 0.00 0.00 37.29 5.36
438 439 1.767759 TAGTACGTCCACTAAGGCCC 58.232 55.000 0.00 0.00 37.29 5.80
439 440 5.718724 ATAATAGTACGTCCACTAAGGCC 57.281 43.478 0.00 0.00 34.77 5.19
440 441 8.333186 CAAAAATAATAGTACGTCCACTAAGGC 58.667 37.037 2.45 0.00 34.77 4.35
441 442 9.374838 ACAAAAATAATAGTACGTCCACTAAGG 57.625 33.333 2.45 0.00 34.77 2.69
443 444 9.153721 CCACAAAAATAATAGTACGTCCACTAA 57.846 33.333 2.45 0.00 34.77 2.24
444 445 7.278424 GCCACAAAAATAATAGTACGTCCACTA 59.722 37.037 0.00 0.00 35.54 2.74
445 446 6.093082 GCCACAAAAATAATAGTACGTCCACT 59.907 38.462 0.00 0.00 0.00 4.00
446 447 6.093082 AGCCACAAAAATAATAGTACGTCCAC 59.907 38.462 0.00 0.00 0.00 4.02
447 448 6.092944 CAGCCACAAAAATAATAGTACGTCCA 59.907 38.462 0.00 0.00 0.00 4.02
448 449 6.314400 TCAGCCACAAAAATAATAGTACGTCC 59.686 38.462 0.00 0.00 0.00 4.79
449 450 7.298507 TCAGCCACAAAAATAATAGTACGTC 57.701 36.000 0.00 0.00 0.00 4.34
450 451 7.675962 TTCAGCCACAAAAATAATAGTACGT 57.324 32.000 0.00 0.00 0.00 3.57
459 460 9.921637 CCTTAACTTATTTCAGCCACAAAAATA 57.078 29.630 0.00 0.00 0.00 1.40
460 461 8.428852 ACCTTAACTTATTTCAGCCACAAAAAT 58.571 29.630 0.00 0.00 0.00 1.82
461 462 7.708752 CACCTTAACTTATTTCAGCCACAAAAA 59.291 33.333 0.00 0.00 0.00 1.94
462 463 7.206687 CACCTTAACTTATTTCAGCCACAAAA 58.793 34.615 0.00 0.00 0.00 2.44
463 464 6.239176 CCACCTTAACTTATTTCAGCCACAAA 60.239 38.462 0.00 0.00 0.00 2.83
464 465 5.242838 CCACCTTAACTTATTTCAGCCACAA 59.757 40.000 0.00 0.00 0.00 3.33
465 466 4.764823 CCACCTTAACTTATTTCAGCCACA 59.235 41.667 0.00 0.00 0.00 4.17
466 467 5.007682 TCCACCTTAACTTATTTCAGCCAC 58.992 41.667 0.00 0.00 0.00 5.01
467 468 5.249780 TCCACCTTAACTTATTTCAGCCA 57.750 39.130 0.00 0.00 0.00 4.75
468 469 7.502561 ACATATCCACCTTAACTTATTTCAGCC 59.497 37.037 0.00 0.00 0.00 4.85
469 470 8.451908 ACATATCCACCTTAACTTATTTCAGC 57.548 34.615 0.00 0.00 0.00 4.26
537 538 8.752254 GGCTCTGTTTTCTTTTACAATACAAAC 58.248 33.333 0.00 0.00 0.00 2.93
538 539 7.646130 CGGCTCTGTTTTCTTTTACAATACAAA 59.354 33.333 0.00 0.00 0.00 2.83
543 544 6.575162 ATCGGCTCTGTTTTCTTTTACAAT 57.425 33.333 0.00 0.00 0.00 2.71
552 553 2.603560 CCGTCTAATCGGCTCTGTTTTC 59.396 50.000 0.00 0.00 43.96 2.29
554 555 2.295253 CCGTCTAATCGGCTCTGTTT 57.705 50.000 0.00 0.00 43.96 2.83
586 587 1.048601 GATAGATGGCGACCCTTGGA 58.951 55.000 0.00 0.00 0.00 3.53
587 588 0.035458 GGATAGATGGCGACCCTTGG 59.965 60.000 0.00 0.00 0.00 3.61
592 593 0.321996 GGGAAGGATAGATGGCGACC 59.678 60.000 0.00 0.00 0.00 4.79
605 606 3.646736 AGAAATAGGGTTTCGGGAAGG 57.353 47.619 0.00 0.00 33.86 3.46
633 634 3.529533 AGATCGATCGGGGTATACGTAG 58.470 50.000 19.33 0.00 0.00 3.51
640 641 0.538977 GTGGGAGATCGATCGGGGTA 60.539 60.000 19.33 4.28 0.00 3.69
641 642 1.833049 GTGGGAGATCGATCGGGGT 60.833 63.158 19.33 1.91 0.00 4.95
642 643 2.920645 CGTGGGAGATCGATCGGGG 61.921 68.421 19.33 4.01 0.00 5.73
643 644 2.645567 CGTGGGAGATCGATCGGG 59.354 66.667 19.33 3.34 0.00 5.14
682 683 0.030773 ATGTGGATGGATCGACGTCG 59.969 55.000 31.30 31.30 38.21 5.12
683 684 1.067060 TGATGTGGATGGATCGACGTC 59.933 52.381 5.18 5.18 45.78 4.34
684 685 1.111277 TGATGTGGATGGATCGACGT 58.889 50.000 0.00 0.00 38.21 4.34
685 686 2.130395 CTTGATGTGGATGGATCGACG 58.870 52.381 0.00 0.00 38.21 5.12
700 701 1.404391 CAGCTCCGTACGTACCTTGAT 59.596 52.381 19.67 5.86 0.00 2.57
724 725 8.703743 GGCTAGTACTAGTAGTATAGATAGGCA 58.296 40.741 26.76 0.00 35.33 4.75
725 726 8.927411 AGGCTAGTACTAGTAGTATAGATAGGC 58.073 40.741 26.76 23.37 32.65 3.93
728 729 9.693739 ACGAGGCTAGTACTAGTAGTATAGATA 57.306 37.037 26.76 4.43 32.65 1.98
729 730 8.593945 ACGAGGCTAGTACTAGTAGTATAGAT 57.406 38.462 26.76 8.24 32.65 1.98
730 731 8.415950 AACGAGGCTAGTACTAGTAGTATAGA 57.584 38.462 26.76 1.77 32.65 1.98
731 732 8.303156 TGAACGAGGCTAGTACTAGTAGTATAG 58.697 40.741 26.76 14.59 32.65 1.31
732 733 8.183104 TGAACGAGGCTAGTACTAGTAGTATA 57.817 38.462 26.76 13.07 32.65 1.47
733 734 7.060383 TGAACGAGGCTAGTACTAGTAGTAT 57.940 40.000 26.76 12.24 32.65 2.12
734 735 6.471233 TGAACGAGGCTAGTACTAGTAGTA 57.529 41.667 26.76 15.22 35.65 1.82
735 736 5.350504 TGAACGAGGCTAGTACTAGTAGT 57.649 43.478 26.76 18.84 35.65 2.73
736 737 8.550710 AATATGAACGAGGCTAGTACTAGTAG 57.449 38.462 26.76 18.32 35.65 2.57
737 738 7.605691 GGAATATGAACGAGGCTAGTACTAGTA 59.394 40.741 26.76 11.42 35.65 1.82
738 739 6.430616 GGAATATGAACGAGGCTAGTACTAGT 59.569 42.308 26.76 11.63 35.65 2.57
739 740 6.655848 AGGAATATGAACGAGGCTAGTACTAG 59.344 42.308 23.25 23.25 36.29 2.57
740 741 6.540995 AGGAATATGAACGAGGCTAGTACTA 58.459 40.000 0.00 1.89 0.00 1.82
741 742 5.386924 AGGAATATGAACGAGGCTAGTACT 58.613 41.667 0.00 0.00 0.00 2.73
742 743 5.617308 CGAGGAATATGAACGAGGCTAGTAC 60.617 48.000 0.00 0.00 0.00 2.73
743 744 4.454847 CGAGGAATATGAACGAGGCTAGTA 59.545 45.833 0.00 0.00 0.00 1.82
744 745 3.253677 CGAGGAATATGAACGAGGCTAGT 59.746 47.826 0.00 0.00 0.00 2.57
745 746 3.253677 ACGAGGAATATGAACGAGGCTAG 59.746 47.826 0.00 0.00 0.00 3.42
746 747 3.004419 CACGAGGAATATGAACGAGGCTA 59.996 47.826 0.00 0.00 0.00 3.93
747 748 2.032620 ACGAGGAATATGAACGAGGCT 58.967 47.619 0.00 0.00 0.00 4.58
771 772 7.450323 GTCCTAAGATCTAACCTAGCTGAGAAT 59.550 40.741 0.00 0.00 0.00 2.40
773 774 6.126449 TGTCCTAAGATCTAACCTAGCTGAGA 60.126 42.308 0.00 0.00 0.00 3.27
778 836 9.026121 TCATATTGTCCTAAGATCTAACCTAGC 57.974 37.037 0.00 0.00 0.00 3.42
811 875 4.133820 TCTTCCGCAAGACAAAGATGAAA 58.866 39.130 0.00 0.00 43.02 2.69
870 1089 6.038997 ACCGCAGAAGTAACTTAGAGAAAT 57.961 37.500 0.00 0.00 0.00 2.17
877 1096 4.304110 CAACAGACCGCAGAAGTAACTTA 58.696 43.478 0.00 0.00 0.00 2.24
878 1097 3.131396 CAACAGACCGCAGAAGTAACTT 58.869 45.455 0.00 0.00 0.00 2.66
879 1098 2.548067 CCAACAGACCGCAGAAGTAACT 60.548 50.000 0.00 0.00 0.00 2.24
893 1116 6.096705 ACAGAAACATTCACAAATCCAACAGA 59.903 34.615 0.00 0.00 0.00 3.41
944 1170 8.144478 CCAGCTGTTAGACACTTACATATGTAT 58.856 37.037 16.16 1.37 0.00 2.29
945 1171 7.123697 ACCAGCTGTTAGACACTTACATATGTA 59.876 37.037 13.81 11.62 0.00 2.29
947 1173 6.256539 CACCAGCTGTTAGACACTTACATATG 59.743 42.308 13.81 0.00 0.00 1.78
952 1178 2.737252 GCACCAGCTGTTAGACACTTAC 59.263 50.000 13.81 0.00 37.91 2.34
966 1192 1.600413 CGAAAACCAAAGAGCACCAGC 60.600 52.381 0.00 0.00 42.56 4.85
985 1211 4.973396 ACATACATTGTTCTGAATGTGCG 58.027 39.130 8.76 3.26 44.51 5.34
1023 1252 3.090219 GCGGATTGTCCTACCGGCT 62.090 63.158 0.00 0.00 45.66 5.52
1035 1264 1.843851 TCATGGACCTTTAGGCGGATT 59.156 47.619 0.00 0.00 39.32 3.01
1044 1273 6.548622 CCAATGTATCTGATTCATGGACCTTT 59.451 38.462 11.87 0.00 0.00 3.11
1074 1303 1.358787 TCCTGGACCATTGCCTTGATT 59.641 47.619 0.00 0.00 0.00 2.57
1087 1318 2.115291 GGAATTGCCGCTCCTGGAC 61.115 63.158 0.00 0.00 0.00 4.02
1101 1332 1.273666 ACCCCGTTGGAGACTAGGAAT 60.274 52.381 0.00 0.00 38.00 3.01
1107 1338 2.847234 TGCACCCCGTTGGAGACT 60.847 61.111 0.00 0.00 38.00 3.24
1176 1407 2.208132 TCTTCTCTTGGAGCTCGAGT 57.792 50.000 15.13 0.23 0.00 4.18
1253 1487 1.485066 GGTTGTCGATGGTATCCAGGT 59.515 52.381 0.00 0.00 36.75 4.00
1427 1680 7.963532 TCCCTTCTAGCGTCTTCATAATAATT 58.036 34.615 0.00 0.00 0.00 1.40
1487 1740 4.017126 TCTTCACCATGACACTATCGACT 58.983 43.478 0.00 0.00 0.00 4.18
1635 1888 1.066858 TCAACAACCGCAAAGGCAAAA 60.067 42.857 0.00 0.00 46.52 2.44
1670 1923 7.855409 GGCAAAATAAAAACAGGTTGTTCAATC 59.145 33.333 0.00 0.00 40.14 2.67
1742 1999 2.621998 TGGAGCGATACTAAGGTACTGC 59.378 50.000 0.00 0.00 40.86 4.40
1756 2013 3.198068 GCAAGAAATATGAGTGGAGCGA 58.802 45.455 0.00 0.00 0.00 4.93
1873 2130 8.990163 ACTAAATTTCCTCTTGACAGGTAAAA 57.010 30.769 0.00 0.00 34.76 1.52
1902 2159 1.545706 AAGGAAGACTCGGGGACTGC 61.546 60.000 0.00 0.00 32.53 4.40
1903 2160 0.977395 AAAGGAAGACTCGGGGACTG 59.023 55.000 0.00 0.00 0.00 3.51
1908 2165 0.875059 GTGCAAAAGGAAGACTCGGG 59.125 55.000 0.00 0.00 0.00 5.14
1910 2167 3.997021 AGTATGTGCAAAAGGAAGACTCG 59.003 43.478 0.00 0.00 0.00 4.18
1977 2234 2.624838 AGGTTGTCATGCTTTGGACTTG 59.375 45.455 0.00 0.00 35.11 3.16
2000 2257 7.684062 ATATTTAAAAGACATGCAATCACGC 57.316 32.000 0.00 0.00 0.00 5.34
2046 2304 2.119801 ATCACCTTCATGTGGCTCAC 57.880 50.000 7.28 0.00 36.87 3.51
2080 2338 7.721842 TGATTACAACACTGATTTCCAAACCTA 59.278 33.333 0.00 0.00 0.00 3.08
2101 2359 8.783660 AGGGTGATACTCACTAGATTTGATTA 57.216 34.615 0.00 0.00 46.19 1.75
2112 2370 5.435686 TGCAATTAAGGGTGATACTCACT 57.564 39.130 7.17 0.00 46.19 3.41
2138 2396 4.053009 TCTGGATGAACTCTCCTCTTCA 57.947 45.455 0.00 0.00 33.69 3.02
2150 2408 5.528690 CGGCTTTCTTCATTATCTGGATGAA 59.471 40.000 0.00 0.00 40.24 2.57
2170 2428 2.238646 TGTCTGGATTTTGTATCCGGCT 59.761 45.455 0.00 0.00 42.83 5.52
2171 2429 2.639065 TGTCTGGATTTTGTATCCGGC 58.361 47.619 0.00 4.58 42.83 6.13
2178 2436 5.221481 TGTTGCATTGATGTCTGGATTTTGT 60.221 36.000 0.00 0.00 0.00 2.83
2223 2481 3.482722 TGGATTGTCTAACGACGACTC 57.517 47.619 0.00 0.00 43.21 3.36
2226 2484 2.981805 CGTTTGGATTGTCTAACGACGA 59.018 45.455 0.00 0.00 44.32 4.20
2235 2493 4.201724 GCACTAGTGATCGTTTGGATTGTC 60.202 45.833 27.08 0.00 34.82 3.18
2240 2498 2.611971 GGTGCACTAGTGATCGTTTGGA 60.612 50.000 27.08 0.00 0.00 3.53
2253 2511 2.261729 TGGTGGTTATCAGGTGCACTA 58.738 47.619 17.98 3.01 0.00 2.74
2256 2514 1.915489 AGATGGTGGTTATCAGGTGCA 59.085 47.619 0.00 0.00 0.00 4.57
2263 2521 4.455606 CAAGGGAAGAGATGGTGGTTATC 58.544 47.826 0.00 0.00 0.00 1.75
2298 2557 2.286872 CAGTGATCCCTAGCTGCTTTG 58.713 52.381 7.79 1.06 0.00 2.77
2299 2558 1.211457 CCAGTGATCCCTAGCTGCTTT 59.789 52.381 7.79 0.00 0.00 3.51
2305 2564 1.044611 GTCTCCCAGTGATCCCTAGC 58.955 60.000 0.00 0.00 0.00 3.42
2317 2576 2.529136 CCCTGGTGTGGTCTCCCA 60.529 66.667 0.00 0.00 38.87 4.37
2371 2630 4.019141 TGGACACCCCGTATAATCACTTTT 60.019 41.667 0.00 0.00 37.93 2.27
2374 2633 2.698797 CTGGACACCCCGTATAATCACT 59.301 50.000 0.00 0.00 37.93 3.41
2375 2634 2.696707 TCTGGACACCCCGTATAATCAC 59.303 50.000 0.00 0.00 37.93 3.06
2376 2635 3.035055 TCTGGACACCCCGTATAATCA 57.965 47.619 0.00 0.00 37.93 2.57
2377 2636 5.733620 TTATCTGGACACCCCGTATAATC 57.266 43.478 0.00 0.00 37.93 1.75
2378 2637 6.697641 AATTATCTGGACACCCCGTATAAT 57.302 37.500 0.00 0.00 36.87 1.28
2379 2638 6.503560 AAATTATCTGGACACCCCGTATAA 57.496 37.500 0.00 0.00 37.93 0.98
2380 2639 7.310796 CCATAAATTATCTGGACACCCCGTATA 60.311 40.741 0.00 0.00 37.93 1.47
2381 2640 6.472887 CATAAATTATCTGGACACCCCGTAT 58.527 40.000 0.00 0.00 37.93 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.