AutoCloner

Multiple sequence alignment - TraesCS3B01G568700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3B01G568700	chr3B	100.000	2597	0	0	1	2597	800221940	800224536	0.000000e+00	4796.0
1	TraesCS3B01G568700	chr3B	85.130	538	77	2	923	1460	800606239	800606773	4.890000e-152	547.0
2	TraesCS3B01G568700	chr3B	88.210	458	49	2	2141	2594	800615873	800616329	2.270000e-150	542.0
3	TraesCS3B01G568700	chr3B	88.945	199	19	2	1945	2140	377115328	377115130	2.580000e-60	243.0
4	TraesCS3B01G568700	chr3B	85.859	198	25	3	1647	1841	800615676	800615873	9.420000e-50	207.0
5	TraesCS3B01G568700	chr3B	91.489	141	12	0	1462	1602	800615441	800615581	7.330000e-46	195.0
6	TraesCS3B01G568700	chr3B	83.505	194	23	7	1953	2140	230944222	230944412	3.440000e-39	172.0
7	TraesCS3B01G568700	chr3B	83.158	190	26	5	1954	2140	760315582	760315768	4.440000e-38	169.0
8	TraesCS3B01G568700	chr3B	90.667	75	7	0	1844	1918	377115402	377115328	1.640000e-17	100.0
9	TraesCS3B01G568700	chr4D	96.266	1098	40	1	506	1603	506746213	506747309	0.000000e+00	1799.0
10	TraesCS3B01G568700	chr4D	89.323	665	43	11	1945	2594	506747943	506748594	0.000000e+00	809.0
11	TraesCS3B01G568700	chr4D	94.257	505	28	1	1	505	506736530	506737033	0.000000e+00	771.0
12	TraesCS3B01G568700	chr4D	87.956	274	23	5	1644	1916	506747401	506747665	5.390000e-82	315.0
13	TraesCS3B01G568700	chr4D	91.542	201	17	0	1940	2140	506747662	506747862	7.080000e-71	278.0
14	TraesCS3B01G568700	chr4B	95.184	1059	50	1	544	1602	664393818	664392761	0.000000e+00	1672.0
15	TraesCS3B01G568700	chr4B	89.805	461	42	2	2141	2597	664392470	664392011	1.040000e-163	586.0
16	TraesCS3B01G568700	chr4B	90.155	193	18	1	1650	1841	664392662	664392470	1.540000e-62	250.0
17	TraesCS3B01G568700	chr4B	84.817	191	24	4	1952	2140	182177443	182177256	1.230000e-43	187.0
18	TraesCS3B01G568700	chr4B	91.304	69	6	0	1100	1168	664381768	664381700	7.650000e-16	95.3
19	TraesCS3B01G568700	chr5A	95.372	994	45	1	609	1602	702996763	702997755	0.000000e+00	1580.0
20	TraesCS3B01G568700	chr5A	85.573	506	56	8	1	506	702996170	702996658	4.960000e-142	514.0
21	TraesCS3B01G568700	chr5A	89.005	382	37	5	2141	2519	702998672	702999051	3.910000e-128	468.0
22	TraesCS3B01G568700	chr5A	88.542	192	21	1	1651	1841	702998442	702998633	5.590000e-57	231.0
23	TraesCS3B01G568700	chr5A	95.122	41	2	0	1605	1645	29171670	29171710	6.000000e-07	65.8
24	TraesCS3B01G568700	chr5A	96.970	33	1	0	1600	1632	468934157	468934189	3.610000e-04	56.5
25	TraesCS3B01G568700	chr7D	88.208	212	21	4	1945	2152	460516246	460516457	1.540000e-62	250.0
26	TraesCS3B01G568700	chr5D	90.476	189	16	2	1952	2138	498658655	498658467	5.550000e-62	248.0
27	TraesCS3B01G568700	chr5D	80.255	314	28	23	1834	2140	169006709	169006995	3.390000e-49	206.0
28	TraesCS3B01G568700	chr5D	90.476	42	4	0	1604	1645	524441871	524441830	3.610000e-04	56.5
29	TraesCS3B01G568700	chr2D	90.476	189	15	3	1952	2139	408086395	408086209	2.000000e-61	246.0
30	TraesCS3B01G568700	chr1A	89.340	197	20	1	1945	2140	297046934	297047130	2.000000e-61	246.0
31	TraesCS3B01G568700	chr5B	89.894	188	19	0	1952	2139	387152902	387153089	2.580000e-60	243.0
32	TraesCS3B01G568700	chr5B	90.141	71	5	2	1844	1913	532728474	532728405	9.900000e-15	91.6
33	TraesCS3B01G568700	chr3D	88.945	199	19	2	1945	2140	255424600	255424402	2.580000e-60	243.0
34	TraesCS3B01G568700	chr2A	90.323	186	16	2	1955	2139	576064862	576064678	2.580000e-60	243.0
35	TraesCS3B01G568700	chr2A	93.478	46	3	0	1600	1645	779584972	779584927	4.640000e-08	69.4
36	TraesCS3B01G568700	chr2A	91.304	46	4	0	1600	1645	642998780	642998825	2.160000e-06	63.9
37	TraesCS3B01G568700	chr7B	88.325	197	22	1	1945	2140	639093332	639093136	4.320000e-58	235.0
38	TraesCS3B01G568700	chr7B	97.222	36	1	0	1600	1635	747329243	747329208	7.760000e-06	62.1
39	TraesCS3B01G568700	chr7A	87.940	199	21	2	1945	2140	519733588	519733786	5.590000e-57	231.0
40	TraesCS3B01G568700	chr7A	87.817	197	23	1	1945	2140	26765086	26764890	2.010000e-56	230.0
41	TraesCS3B01G568700	chr7A	87.817	197	22	2	1945	2140	666970575	666970380	2.010000e-56	230.0
42	TraesCS3B01G568700	chr2B	84.896	192	25	3	1952	2140	63796072	63795882	9.490000e-45	191.0
43	TraesCS3B01G568700	chr2B	94.000	50	3	0	2295	2344	163545280	163545231	2.770000e-10	76.8
44	TraesCS3B01G568700	chr2B	91.304	46	4	0	1600	1645	793964941	793964986	2.160000e-06	63.9
45	TraesCS3B01G568700	chrUn	81.116	233	16	15	1844	2075	429089412	429089207	7.440000e-36	161.0
46	TraesCS3B01G568700	chrUn	94.595	37	2	0	1604	1640	19207533	19207497	1.000000e-04	58.4
47	TraesCS3B01G568700	chr6D	91.837	49	4	0	1597	1645	308567370	308567418	4.640000e-08	69.4

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3B01G568700	chr3B	800221940	800224536	2596	False	4796.000000	4796	100.000000	1	2597	1	chr3B.!!$F3	2596
1	TraesCS3B01G568700	chr3B	800606239	800606773	534	False	547.000000	547	85.130000	923	1460	1	chr3B.!!$F4	537
2	TraesCS3B01G568700	chr3B	800615441	800616329	888	False	314.666667	542	88.519333	1462	2594	3	chr3B.!!$F5	1132
3	TraesCS3B01G568700	chr4D	506746213	506748594	2381	False	800.250000	1799	91.271750	506	2594	4	chr4D.!!$F2	2088
4	TraesCS3B01G568700	chr4D	506736530	506737033	503	False	771.000000	771	94.257000	1	505	1	chr4D.!!$F1	504
5	TraesCS3B01G568700	chr4B	664392011	664393818	1807	True	836.000000	1672	91.714667	544	2597	3	chr4B.!!$R3	2053
6	TraesCS3B01G568700	chr5A	702996170	702999051	2881	False	698.250000	1580	89.623000	1	2519	4	chr5A.!!$F3	2518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
347	349	0.839946	ACTGGACCAGTCAGCAAACT	59.16	50.0	21.99	0.0	41.21	2.66	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1648	1729	0.038892	GTGCCGAGTTTACTCCGACA	60.039	55.0	4.4	0.0	39.79	4.35	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
34	35	3.374745	CTTGAGCATTGTTGTTGGACAC	58.625	45.455	0.00	0.00	0.00	3.67
35	36	1.333308	TGAGCATTGTTGTTGGACACG	59.667	47.619	0.00	0.00	0.00	4.49
56	57	6.761714	ACACGCTTTCTTAATAGTCCTTATGG	59.238	38.462	0.00	0.00	0.00	2.74
184	186	6.463995	TTGCCAAGTGTTTCTTAGAAACAT	57.536	33.333	33.72	21.32	41.51	2.71
197	199	6.285224	TCTTAGAAACATTCGTCAAAGTCCA	58.715	36.000	0.00	0.00	34.02	4.02
208	210	3.124636	CGTCAAAGTCCATTCTTTACCGG	59.875	47.826	0.00	0.00	36.12	5.28
273	275	5.398236	TGTTTCCAAATGATTTCCCTACCA	58.602	37.500	0.00	0.00	0.00	3.25
280	282	2.531771	TGATTTCCCTACCACACTCGA	58.468	47.619	0.00	0.00	0.00	4.04
340	342	3.035363	TGTCAAACTACTGGACCAGTCA	58.965	45.455	30.43	17.07	41.21	3.41
347	349	0.839946	ACTGGACCAGTCAGCAAACT	59.160	50.000	21.99	0.00	41.21	2.66
358	360	1.272490	TCAGCAAACTCGACGATTCCT	59.728	47.619	0.00	0.00	0.00	3.36
364	366	4.235360	CAAACTCGACGATTCCTGTAGTT	58.765	43.478	0.00	0.00	0.00	2.24
371	373	4.304110	GACGATTCCTGTAGTTGTCAACA	58.696	43.478	17.78	1.50	0.00	3.33
486	488	1.324383	TGGGATAAGCGTGCTCGATA	58.676	50.000	13.13	4.54	39.71	2.92
508	538	3.648067	AGAAATTGACTGACCTGTCTCCA	59.352	43.478	8.20	0.00	37.79	3.86
679	709	5.707298	AGAGTTATCACACAGGATTTGGTTG	59.293	40.000	0.00	0.00	0.00	3.77
683	713	3.843422	TCACACAGGATTTGGTTGGAAT	58.157	40.909	0.00	0.00	0.00	3.01
773	803	2.100879	GAGTGTGCGACAGGGAAGGT	62.101	60.000	0.00	0.00	0.00	3.50
792	822	8.272889	GGGAAGGTTTAATAACAGGATTCTACT	58.727	37.037	0.00	0.00	35.92	2.57
995	1025	3.881688	AGTACGTTCATACTACCATCGCT	59.118	43.478	0.00	0.00	33.50	4.93
1016	1046	2.739996	CCATGGCTTCCTCCTCGCT	61.740	63.158	0.00	0.00	0.00	4.93
1347	1377	2.604079	TTCACGGCGGGGAGGTTA	60.604	61.111	10.28	0.00	0.00	2.85
1500	1530	1.336125	AGCGTACCCGATAAGTACAGC	59.664	52.381	0.00	0.00	40.10	4.40
1532	1562	4.560128	CTCGACCTCTTCATTCAAGTCAA	58.440	43.478	0.00	0.00	33.27	3.18
1551	1581	2.034532	TCGGACCGTCTGCCACTA	59.965	61.111	14.79	0.00	0.00	2.74
1576	1606	3.981308	CGGTTGATTCCGTTGGCT	58.019	55.556	0.00	0.00	44.77	4.75
1577	1607	1.501741	CGGTTGATTCCGTTGGCTG	59.498	57.895	0.00	0.00	44.77	4.85
1608	1638	3.838244	TCAATCTGAAATACCCCCTCG	57.162	47.619	0.00	0.00	0.00	4.63
1611	1641	6.345440	TTCAATCTGAAATACCCCCTCGGTA	61.345	44.000	0.00	0.00	40.41	4.02
1612	1642	7.774180	TTCAATCTGAAATACCCCCTCGGTAA	61.774	42.308	0.00	0.00	39.94	2.85
1613	1643	9.170754	TTCAATCTGAAATACCCCCTCGGTAAA	62.171	40.741	0.00	0.00	39.94	2.01
1624	1654	6.384603	ACCCCCTCGGTAAACTAATATAAGA	58.615	40.000	0.00	0.00	45.97	2.10
1625	1655	6.496218	ACCCCCTCGGTAAACTAATATAAGAG	59.504	42.308	0.00	0.00	45.97	2.85
1626	1656	6.396450	CCCCTCGGTAAACTAATATAAGAGC	58.604	44.000	0.00	0.00	0.00	4.09
1627	1657	6.091437	CCCTCGGTAAACTAATATAAGAGCG	58.909	44.000	0.00	0.00	0.00	5.03
1628	1658	6.294397	CCCTCGGTAAACTAATATAAGAGCGT	60.294	42.308	0.00	0.00	0.00	5.07
1629	1659	7.144000	CCTCGGTAAACTAATATAAGAGCGTT	58.856	38.462	0.00	0.00	0.00	4.84
1631	1661	9.669353	CTCGGTAAACTAATATAAGAGCGTTTA	57.331	33.333	0.00	0.00	0.00	2.01
1664	1745	3.505464	ATTCTGTCGGAGTAAACTCGG	57.495	47.619	10.52	10.52	43.76	4.63
1707	1790	0.462047	ATGGGGATCGTGCGAAGTTC	60.462	55.000	0.00	0.00	0.00	3.01
1805	2475	5.234972	CACATGCTTGCTATCTCATTAACGA	59.765	40.000	0.00	0.00	0.00	3.85
1854	2525	9.030452	ACTTTTATTATTACCAGAACAATGCCA	57.970	29.630	0.00	0.00	0.00	4.92
1859	2530	0.178981	ACCAGAACAATGCCAGTGCT	60.179	50.000	0.00	0.00	38.71	4.40
1875	2546	4.913376	CAGTGCTTTGCAACTGGATATAC	58.087	43.478	0.00	0.00	41.47	1.47
1886	2557	8.245195	TGCAACTGGATATACATGTTCTAGTA	57.755	34.615	13.48	0.00	31.84	1.82
1888	2559	8.141909	GCAACTGGATATACATGTTCTAGTACA	58.858	37.037	13.48	4.54	31.84	2.90
1908	2579	7.394816	AGTACATTAGCTTGTGATTTACCTGT	58.605	34.615	1.14	0.00	0.00	4.00
1979	2650	7.760131	AAATAAATGTTCATCAAATCTGCCG	57.240	32.000	0.00	0.00	0.00	5.69
2101	2772	0.397816	TTTGGACAAAGGGGTGGTGG	60.398	55.000	0.00	0.00	0.00	4.61
2111	2782	1.726192	GGGGTGGTGGGAAGAAAGGT	61.726	60.000	0.00	0.00	0.00	3.50
2117	2788	3.255888	GTGGTGGGAAGAAAGGTGAAATC	59.744	47.826	0.00	0.00	0.00	2.17
2118	2789	2.488153	GGTGGGAAGAAAGGTGAAATCG	59.512	50.000	0.00	0.00	0.00	3.34
2225	3176	1.619654	CCACCTCATCAACTGCCAAA	58.380	50.000	0.00	0.00	0.00	3.28
2253	3204	5.129815	ACATATGCATGGGAAAAAGAATGCT	59.870	36.000	10.16	0.00	44.53	3.79
2257	3208	5.421277	TGCATGGGAAAAAGAATGCTATTG	58.579	37.500	7.86	0.00	44.53	1.90
2260	3211	7.041107	GCATGGGAAAAAGAATGCTATTGTAA	58.959	34.615	0.00	0.00	41.71	2.41
2494	3449	2.511218	TCCTGGAGAATTAGCAGGCATT	59.489	45.455	0.00	0.00	33.32	3.56
2571	3526	3.436761	GGCTAGACCTAGTGTCCAGGTAT	60.437	52.174	0.00	0.00	46.60	2.73
2594	3549	7.918536	ATATGTGATCATGGCTAGATTCAAC	57.081	36.000	0.00	0.00	35.70	3.18

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
34	35	6.761714	ACACCATAAGGACTATTAAGAAAGCG	59.238	38.462	0.00	0.00	38.69	4.68
35	36	7.769044	TGACACCATAAGGACTATTAAGAAAGC	59.231	37.037	0.00	0.00	38.69	3.51
56	57	7.721286	TTCTTCTCTTTTCATCTCTTGACAC	57.279	36.000	0.00	0.00	32.84	3.67
184	186	4.449743	CGGTAAAGAATGGACTTTGACGAA	59.550	41.667	0.00	0.00	39.80	3.85
197	199	6.740681	GCCTAGTATTACAGCCGGTAAAGAAT	60.741	42.308	1.90	0.00	44.70	2.40
208	210	7.083875	TCAATGTTTTGCCTAGTATTACAGC	57.916	36.000	0.00	0.00	32.61	4.40
273	275	4.154195	GCAAACAAATCCATAGTCGAGTGT	59.846	41.667	2.10	0.00	0.00	3.55
280	282	2.099405	CCCGGCAAACAAATCCATAGT	58.901	47.619	0.00	0.00	0.00	2.12
329	331	1.517242	GAGTTTGCTGACTGGTCCAG	58.483	55.000	17.88	17.88	37.52	3.86
340	342	1.000955	ACAGGAATCGTCGAGTTTGCT	59.999	47.619	0.00	0.00	31.59	3.91
347	349	2.815503	TGACAACTACAGGAATCGTCGA	59.184	45.455	0.00	0.00	0.00	4.20
358	360	5.620206	ACATGAAGGATGTTGACAACTACA	58.380	37.500	18.73	9.92	43.20	2.74
364	366	3.307691	GGAGGACATGAAGGATGTTGACA	60.308	47.826	0.00	0.00	45.90	3.58
371	373	2.357569	GCCAAAGGAGGACATGAAGGAT	60.358	50.000	0.00	0.00	0.00	3.24
404	406	1.548582	CCATGACCTGCCCAAAGAAGT	60.549	52.381	0.00	0.00	0.00	3.01
486	488	3.648067	TGGAGACAGGTCAGTCAATTTCT	59.352	43.478	1.84	0.00	40.98	2.52
508	538	2.824041	GGGCCGTGCGTGATCATT	60.824	61.111	0.00	0.00	0.00	2.57
679	709	3.855689	ACTAAGCATGCACACAATTCC	57.144	42.857	21.98	0.00	0.00	3.01
683	713	4.916983	AGAAAACTAAGCATGCACACAA	57.083	36.364	21.98	0.00	0.00	3.33
995	1025	2.614969	AGGAGGAAGCCATGGCCA	60.615	61.111	33.14	8.56	43.17	5.36
1016	1046	2.357881	CGAGAAGCAGTGGCAGCA	60.358	61.111	1.37	0.00	44.61	4.41
1023	1053	1.291588	CAGGAGCACGAGAAGCAGT	59.708	57.895	0.00	0.00	0.00	4.40
1425	1455	2.178273	GCCATTCGAAACACGCCC	59.822	61.111	0.00	0.00	42.26	6.13
1437	1467	2.967076	CTGTATCCGCGCGCCATT	60.967	61.111	27.36	12.64	0.00	3.16
1449	1479	3.276857	CACAAGCCTCATGAAGCTGTAT	58.723	45.455	19.37	5.59	39.87	2.29
1532	1562	2.759641	TAGTGGCAGACGGTCCGAGT	62.760	60.000	20.51	0.56	0.00	4.18
1551	1581	2.746277	GAATCAACCGGCGGCAGT	60.746	61.111	28.71	9.64	0.00	4.40
1603	1633	6.091437	CGCTCTTATATTAGTTTACCGAGGG	58.909	44.000	0.00	0.00	0.00	4.30
1604	1634	6.675987	ACGCTCTTATATTAGTTTACCGAGG	58.324	40.000	0.00	0.00	0.00	4.63
1605	1635	8.571461	AAACGCTCTTATATTAGTTTACCGAG	57.429	34.615	0.00	0.00	31.14	4.63
1626	1656	8.356526	CGACAGAATAAAGTAGCGATATAAACG	58.643	37.037	0.00	0.00	0.00	3.60
1627	1657	8.636843	CCGACAGAATAAAGTAGCGATATAAAC	58.363	37.037	0.00	0.00	0.00	2.01
1628	1658	8.570488	TCCGACAGAATAAAGTAGCGATATAAA	58.430	33.333	0.00	0.00	0.00	1.40
1629	1659	8.102800	TCCGACAGAATAAAGTAGCGATATAA	57.897	34.615	0.00	0.00	0.00	0.98
1631	1661	6.207025	ACTCCGACAGAATAAAGTAGCGATAT	59.793	38.462	0.00	0.00	0.00	1.63
1632	1662	5.530171	ACTCCGACAGAATAAAGTAGCGATA	59.470	40.000	0.00	0.00	0.00	2.92
1636	1666	7.034397	AGTTTACTCCGACAGAATAAAGTAGC	58.966	38.462	0.00	0.00	0.00	3.58
1637	1667	7.428761	CGAGTTTACTCCGACAGAATAAAGTAG	59.571	40.741	4.40	0.00	39.79	2.57
1638	1668	7.246311	CGAGTTTACTCCGACAGAATAAAGTA	58.754	38.462	4.40	0.00	39.79	2.24
1639	1669	6.091437	CGAGTTTACTCCGACAGAATAAAGT	58.909	40.000	4.40	0.00	39.79	2.66
1640	1670	5.515626	CCGAGTTTACTCCGACAGAATAAAG	59.484	44.000	4.40	0.00	39.79	1.85
1642	1723	4.676196	GCCGAGTTTACTCCGACAGAATAA	60.676	45.833	4.40	0.00	39.79	1.40
1646	1727	0.524862	GCCGAGTTTACTCCGACAGA	59.475	55.000	4.40	0.00	39.79	3.41
1648	1729	0.038892	GTGCCGAGTTTACTCCGACA	60.039	55.000	4.40	0.00	39.79	4.35
1678	1759	1.338107	CGATCCCCATGCACTAGGTA	58.662	55.000	0.00	0.00	0.00	3.08
1756	1839	9.393249	TGCGCATGTTAAGATAATAAAAATAGC	57.607	29.630	5.66	0.00	0.00	2.97
1805	2475	2.186243	TGCATGCATTTTATGGTGGGT	58.814	42.857	18.46	0.00	0.00	4.51
1842	2513	2.400399	CAAAGCACTGGCATTGTTCTG	58.600	47.619	6.71	0.00	42.22	3.02
1854	2525	4.588899	TGTATATCCAGTTGCAAAGCACT	58.411	39.130	0.00	0.00	38.71	4.40
1859	2530	8.046708	ACTAGAACATGTATATCCAGTTGCAAA	58.953	33.333	0.00	0.00	0.00	3.68
1875	2546	8.654230	ATCACAAGCTAATGTACTAGAACATG	57.346	34.615	0.00	0.00	39.98	3.21
1886	2557	5.648092	GGACAGGTAAATCACAAGCTAATGT	59.352	40.000	0.00	0.00	0.00	2.71
1888	2559	5.815581	TGGACAGGTAAATCACAAGCTAAT	58.184	37.500	0.00	0.00	0.00	1.73
1928	2599	6.410914	CACGGTCGCAAGCTAATAAAAATAAG	59.589	38.462	0.00	0.00	37.18	1.73
1934	2605	2.690786	ACACGGTCGCAAGCTAATAAA	58.309	42.857	0.00	0.00	37.18	1.40
1941	2612	3.458779	TTTATTTACACGGTCGCAAGC	57.541	42.857	0.00	0.00	37.18	4.01
1942	2613	4.965062	ACATTTATTTACACGGTCGCAAG	58.035	39.130	0.00	0.00	0.00	4.01
1949	2620	9.787532	AGATTTGATGAACATTTATTTACACGG	57.212	29.630	0.00	0.00	0.00	4.94
2074	2745	1.412361	CCCTTTGTCCAAACTTCCCCA	60.412	52.381	0.00	0.00	0.00	4.96
2101	2772	3.190744	GGTTCCGATTTCACCTTTCTTCC	59.809	47.826	0.00	0.00	0.00	3.46
2171	3122	9.552114	GTGATATGAAACTCTTTTGTGATGAAG	57.448	33.333	0.00	0.00	0.00	3.02
2184	3135	5.764686	TGGCATATGTGGTGATATGAAACTC	59.235	40.000	4.29	0.00	38.20	3.01
2225	3176	6.795144	TCTTTTTCCCATGCATATGTTCAT	57.205	33.333	0.00	0.00	32.21	2.57
2339	3290	4.642445	TGCTGTAGGAATCATTGCAATG	57.358	40.909	29.75	29.75	37.75	2.82
2434	3389	1.806542	GCAATATGTCCCAGCATACCG	59.193	52.381	0.00	0.00	34.59	4.02
2523	3478	9.393512	CCTATGAATGATCAAAGAGAAAGACTT	57.606	33.333	0.00	0.00	39.49	3.01
2571	3526	6.829849	TGTTGAATCTAGCCATGATCACATA	58.170	36.000	0.00	0.00	35.09	2.29

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.