Multiple sequence alignment - TraesCS3B01G568600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G568600 chr3B 100.000 3942 0 0 1 3942 800172857 800176798 0.000000e+00 7280.0
1 TraesCS3B01G568600 chr3B 83.427 893 140 5 2061 2946 566190341 566189450 0.000000e+00 822.0
2 TraesCS3B01G568600 chr3B 87.046 633 74 6 1197 1828 566190961 566190336 0.000000e+00 708.0
3 TraesCS3B01G568600 chr4B 93.138 2798 147 19 1164 3940 664519576 664516803 0.000000e+00 4061.0
4 TraesCS3B01G568600 chr4B 93.611 360 13 6 811 1170 664525371 664525022 2.700000e-146 529.0
5 TraesCS3B01G568600 chr4B 95.098 102 5 0 110 211 664526780 664526679 1.130000e-35 161.0
6 TraesCS3B01G568600 chr4B 80.714 140 20 2 2056 2195 661308151 661308283 6.970000e-18 102.0
7 TraesCS3B01G568600 chr4B 100.000 46 0 0 204 249 664525390 664525345 7.020000e-13 86.1
8 TraesCS3B01G568600 chr5A 87.930 2444 200 46 952 3353 702982370 702984760 0.000000e+00 2791.0
9 TraesCS3B01G568600 chr5A 86.482 614 66 14 1257 1867 702230033 702230632 0.000000e+00 658.0
10 TraesCS3B01G568600 chr4D 93.617 940 60 0 2020 2959 506721089 506722028 0.000000e+00 1404.0
11 TraesCS3B01G568600 chr4D 88.665 1041 86 18 952 1981 506720063 506721082 0.000000e+00 1240.0
12 TraesCS3B01G568600 chr4D 79.199 899 165 12 2056 2949 506104649 506105530 4.360000e-169 604.0
13 TraesCS3B01G568600 chr4D 86.245 458 55 7 1414 1867 506104071 506104524 1.270000e-134 490.0
14 TraesCS3B01G568600 chr4D 89.914 347 30 3 468 811 506622799 506623143 3.620000e-120 442.0
15 TraesCS3B01G568600 chr4D 89.625 347 32 2 468 811 506630495 506630840 4.680000e-119 438.0
16 TraesCS3B01G568600 chr4D 83.761 351 40 9 3012 3352 506722023 506722366 2.290000e-82 316.0
17 TraesCS3B01G568600 chr3A 85.940 633 74 11 1199 1828 571913303 571912683 0.000000e+00 662.0
18 TraesCS3B01G568600 chr3A 84.579 642 75 12 1199 1828 571809637 571809008 5.600000e-173 617.0
19 TraesCS3B01G568600 chr3A 85.591 347 31 7 468 811 711365404 711365074 2.920000e-91 346.0
20 TraesCS3B01G568600 chr3A 95.000 60 2 1 265 323 747963594 747963535 4.190000e-15 93.5
21 TraesCS3B01G568600 chr3A 96.875 32 1 0 1950 1981 24006847 24006878 2.000000e-03 54.7
22 TraesCS3B01G568600 chr7D 92.453 318 18 3 498 812 30773548 30773234 2.160000e-122 449.0
23 TraesCS3B01G568600 chr7D 92.727 275 16 2 541 811 30812209 30811935 1.030000e-105 394.0
24 TraesCS3B01G568600 chr7D 87.786 262 28 2 468 726 30810842 30810582 1.780000e-78 303.0
25 TraesCS3B01G568600 chr3D 88.103 311 29 5 1259 1567 433427176 433426872 2.900000e-96 363.0
26 TraesCS3B01G568600 chr3D 93.023 43 3 0 1936 1978 12368245 12368203 3.290000e-06 63.9
27 TraesCS3B01G568600 chr7B 88.942 208 18 5 606 811 745291106 745290902 6.540000e-63 252.0
28 TraesCS3B01G568600 chr6A 92.857 168 8 1 648 811 614098563 614098730 1.420000e-59 241.0
29 TraesCS3B01G568600 chr6A 82.470 251 33 10 463 705 215018537 215018290 3.990000e-50 209.0
30 TraesCS3B01G568600 chr6A 82.470 251 33 9 463 705 215019998 215019751 3.990000e-50 209.0
31 TraesCS3B01G568600 chr1D 94.079 152 8 1 664 814 468553532 468553381 3.060000e-56 230.0
32 TraesCS3B01G568600 chr1D 95.349 43 2 0 1936 1978 478358055 478358013 7.070000e-08 69.4
33 TraesCS3B01G568600 chr1A 92.763 152 10 1 664 814 561370454 561370303 6.630000e-53 219.0
34 TraesCS3B01G568600 chr7A 75.709 494 72 33 265 730 180377235 180376762 1.860000e-48 204.0
35 TraesCS3B01G568600 chr2A 95.082 61 2 1 265 324 733582309 733582249 1.170000e-15 95.3
36 TraesCS3B01G568600 chr2A 92.857 42 3 0 1944 1985 203665425 203665384 1.180000e-05 62.1
37 TraesCS3B01G568600 chr4A 78.443 167 18 14 262 424 718882367 718882519 4.190000e-15 93.5
38 TraesCS3B01G568600 chr1B 93.333 60 3 1 265 323 164856598 164856539 1.950000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G568600 chr3B 800172857 800176798 3941 False 7280.000000 7280 100.000000 1 3942 1 chr3B.!!$F1 3941
1 TraesCS3B01G568600 chr3B 566189450 566190961 1511 True 765.000000 822 85.236500 1197 2946 2 chr3B.!!$R1 1749
2 TraesCS3B01G568600 chr4B 664516803 664519576 2773 True 4061.000000 4061 93.138000 1164 3940 1 chr4B.!!$R1 2776
3 TraesCS3B01G568600 chr4B 664525022 664526780 1758 True 258.700000 529 96.236333 110 1170 3 chr4B.!!$R2 1060
4 TraesCS3B01G568600 chr5A 702982370 702984760 2390 False 2791.000000 2791 87.930000 952 3353 1 chr5A.!!$F2 2401
5 TraesCS3B01G568600 chr5A 702230033 702230632 599 False 658.000000 658 86.482000 1257 1867 1 chr5A.!!$F1 610
6 TraesCS3B01G568600 chr4D 506720063 506722366 2303 False 986.666667 1404 88.681000 952 3352 3 chr4D.!!$F4 2400
7 TraesCS3B01G568600 chr4D 506104071 506105530 1459 False 547.000000 604 82.722000 1414 2949 2 chr4D.!!$F3 1535
8 TraesCS3B01G568600 chr3A 571912683 571913303 620 True 662.000000 662 85.940000 1199 1828 1 chr3A.!!$R2 629
9 TraesCS3B01G568600 chr3A 571809008 571809637 629 True 617.000000 617 84.579000 1199 1828 1 chr3A.!!$R1 629
10 TraesCS3B01G568600 chr7D 30810582 30812209 1627 True 348.500000 394 90.256500 468 811 2 chr7D.!!$R2 343
11 TraesCS3B01G568600 chr6A 215018290 215019998 1708 True 209.000000 209 82.470000 463 705 2 chr6A.!!$R1 242

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
314 1611 0.033504 TGAACCGAAGCTCTGACACC 59.966 55.000 0.00 0.0 0.00 4.16 F
315 1612 0.033504 GAACCGAAGCTCTGACACCA 59.966 55.000 0.00 0.0 0.00 4.17 F
516 1813 0.040246 GCGATACACGGAGGACTAGC 60.040 60.000 0.00 0.0 42.83 3.42 F
808 2134 0.179067 CCGCCACGGCTTATTCCTAA 60.179 55.000 6.48 0.0 41.17 2.69 F
823 2149 0.179156 CCTAACATTTGCTGCTGGCG 60.179 55.000 0.00 0.0 45.43 5.69 F
824 2150 0.179156 CTAACATTTGCTGCTGGCGG 60.179 55.000 0.00 0.0 45.43 6.13 F
863 2189 0.768622 ACCTGACGAATCCCCAAACA 59.231 50.000 0.00 0.0 0.00 2.83 F
1125 2454 1.153127 AGCGCTACTAGCCGTCTCT 60.153 57.895 8.99 0.0 38.18 3.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1135 2464 0.671796 ATGGTGAACACGTCGTCTGA 59.328 50.000 0.00 0.0 0.00 3.27 R
2036 4033 1.069765 CAGTTGTCAGACAGGCCGT 59.930 57.895 2.82 0.0 0.00 5.68 R
2515 5128 0.519077 CGGACTTGAGCAAGGCTTTC 59.481 55.000 15.13 0.0 45.68 2.62 R
2620 5242 0.601558 TCACCAGTACTTCCTCACGC 59.398 55.000 0.00 0.0 0.00 5.34 R
2762 5384 1.138069 TGTGCCATCGATACGTGGATT 59.862 47.619 6.97 0.0 37.72 3.01 R
2796 5418 3.438087 CACCCTCATGCTTGTTTCTACAG 59.562 47.826 0.00 0.0 35.28 2.74 R
2835 5457 2.579873 CATCGGCATCCAAATCTTCCT 58.420 47.619 0.00 0.0 0.00 3.36 R
3098 5737 1.280066 GCCCAAATTACGCAATGCTG 58.720 50.000 2.94 0.0 0.00 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.719355 AAACAGTTTCCAAATTTTGAAACTACT 57.281 25.926 33.05 24.69 43.42 2.57
53 54 7.716768 AAAACCAAAAACTGAAAAACGAAGA 57.283 28.000 0.00 0.00 0.00 2.87
54 55 7.899178 AAACCAAAAACTGAAAAACGAAGAT 57.101 28.000 0.00 0.00 0.00 2.40
55 56 7.899178 AACCAAAAACTGAAAAACGAAGATT 57.101 28.000 0.00 0.00 0.00 2.40
56 57 7.899178 ACCAAAAACTGAAAAACGAAGATTT 57.101 28.000 0.00 0.00 32.69 2.17
57 58 8.317891 ACCAAAAACTGAAAAACGAAGATTTT 57.682 26.923 0.00 0.00 44.96 1.82
58 59 8.227119 ACCAAAAACTGAAAAACGAAGATTTTG 58.773 29.630 9.22 9.22 42.41 2.44
59 60 8.586272 CAAAAACTGAAAAACGAAGATTTTGG 57.414 30.769 8.60 0.00 42.41 3.28
60 61 7.899178 AAAACTGAAAAACGAAGATTTTGGT 57.101 28.000 0.00 0.00 42.41 3.67
61 62 7.899178 AAACTGAAAAACGAAGATTTTGGTT 57.101 28.000 0.00 0.00 42.41 3.67
62 63 8.989653 AAACTGAAAAACGAAGATTTTGGTTA 57.010 26.923 0.00 0.00 42.41 2.85
63 64 8.628882 AACTGAAAAACGAAGATTTTGGTTAG 57.371 30.769 0.00 0.00 42.41 2.34
64 65 7.768240 ACTGAAAAACGAAGATTTTGGTTAGT 58.232 30.769 0.00 0.00 42.41 2.24
65 66 8.248253 ACTGAAAAACGAAGATTTTGGTTAGTT 58.752 29.630 0.00 0.00 42.41 2.24
66 67 8.623310 TGAAAAACGAAGATTTTGGTTAGTTC 57.377 30.769 10.54 10.54 42.41 3.01
67 68 8.463607 TGAAAAACGAAGATTTTGGTTAGTTCT 58.536 29.630 14.94 0.00 42.41 3.01
68 69 9.297586 GAAAAACGAAGATTTTGGTTAGTTCTT 57.702 29.630 0.00 0.00 42.41 2.52
69 70 9.647797 AAAAACGAAGATTTTGGTTAGTTCTTT 57.352 25.926 0.00 0.00 40.88 2.52
70 71 9.647797 AAAACGAAGATTTTGGTTAGTTCTTTT 57.352 25.926 0.00 0.00 34.65 2.27
71 72 9.647797 AAACGAAGATTTTGGTTAGTTCTTTTT 57.352 25.926 0.00 0.00 34.65 1.94
90 91 4.406001 TTTTTCCGGTTTTGTTTTGCAC 57.594 36.364 0.00 0.00 0.00 4.57
91 92 3.320673 TTTCCGGTTTTGTTTTGCACT 57.679 38.095 0.00 0.00 0.00 4.40
92 93 2.285827 TCCGGTTTTGTTTTGCACTG 57.714 45.000 0.00 0.00 0.00 3.66
93 94 0.649993 CCGGTTTTGTTTTGCACTGC 59.350 50.000 0.00 0.00 0.00 4.40
94 95 0.649993 CGGTTTTGTTTTGCACTGCC 59.350 50.000 0.00 0.00 0.00 4.85
95 96 1.738700 CGGTTTTGTTTTGCACTGCCT 60.739 47.619 0.00 0.00 0.00 4.75
96 97 1.665169 GGTTTTGTTTTGCACTGCCTG 59.335 47.619 0.00 0.00 0.00 4.85
97 98 2.615869 GTTTTGTTTTGCACTGCCTGA 58.384 42.857 0.00 0.00 0.00 3.86
98 99 2.292103 TTTGTTTTGCACTGCCTGAC 57.708 45.000 0.00 0.00 0.00 3.51
99 100 1.473258 TTGTTTTGCACTGCCTGACT 58.527 45.000 0.00 0.00 0.00 3.41
100 101 2.340210 TGTTTTGCACTGCCTGACTA 57.660 45.000 0.00 0.00 0.00 2.59
101 102 2.862541 TGTTTTGCACTGCCTGACTAT 58.137 42.857 0.00 0.00 0.00 2.12
102 103 3.221771 TGTTTTGCACTGCCTGACTATT 58.778 40.909 0.00 0.00 0.00 1.73
103 104 3.636300 TGTTTTGCACTGCCTGACTATTT 59.364 39.130 0.00 0.00 0.00 1.40
104 105 3.921119 TTTGCACTGCCTGACTATTTG 57.079 42.857 0.00 0.00 0.00 2.32
105 106 1.167851 TGCACTGCCTGACTATTTGC 58.832 50.000 0.00 0.00 0.00 3.68
106 107 0.453390 GCACTGCCTGACTATTTGCC 59.547 55.000 0.00 0.00 0.00 4.52
107 108 0.729116 CACTGCCTGACTATTTGCCG 59.271 55.000 0.00 0.00 0.00 5.69
108 109 1.026718 ACTGCCTGACTATTTGCCGC 61.027 55.000 0.00 0.00 0.00 6.53
109 110 1.718757 CTGCCTGACTATTTGCCGCC 61.719 60.000 0.00 0.00 0.00 6.13
110 111 2.481471 GCCTGACTATTTGCCGCCC 61.481 63.158 0.00 0.00 0.00 6.13
111 112 2.180204 CCTGACTATTTGCCGCCCG 61.180 63.158 0.00 0.00 0.00 6.13
112 113 2.822255 TGACTATTTGCCGCCCGC 60.822 61.111 0.00 0.00 38.31 6.13
197 198 4.878397 CCTAAGAAGGTGACTAGCAATTGG 59.122 45.833 7.72 0.00 42.68 3.16
254 1551 3.453559 GGTGATCCACCGACGAATT 57.546 52.632 0.00 0.00 44.95 2.17
255 1552 1.287425 GGTGATCCACCGACGAATTC 58.713 55.000 0.00 0.00 44.95 2.17
256 1553 1.287425 GTGATCCACCGACGAATTCC 58.713 55.000 0.00 0.00 0.00 3.01
257 1554 0.177141 TGATCCACCGACGAATTCCC 59.823 55.000 0.00 0.00 0.00 3.97
258 1555 0.177141 GATCCACCGACGAATTCCCA 59.823 55.000 0.00 0.00 0.00 4.37
259 1556 0.616371 ATCCACCGACGAATTCCCAA 59.384 50.000 0.00 0.00 0.00 4.12
260 1557 0.616371 TCCACCGACGAATTCCCAAT 59.384 50.000 0.00 0.00 0.00 3.16
261 1558 1.003812 TCCACCGACGAATTCCCAATT 59.996 47.619 0.00 0.00 0.00 2.32
262 1559 1.132262 CCACCGACGAATTCCCAATTG 59.868 52.381 0.00 0.00 0.00 2.32
263 1560 2.080693 CACCGACGAATTCCCAATTGA 58.919 47.619 7.12 0.00 0.00 2.57
264 1561 2.095853 CACCGACGAATTCCCAATTGAG 59.904 50.000 7.12 0.00 0.00 3.02
265 1562 1.670811 CCGACGAATTCCCAATTGAGG 59.329 52.381 7.12 6.82 0.00 3.86
273 1570 3.799753 CCAATTGAGGGACGAGCG 58.200 61.111 7.12 0.00 0.00 5.03
274 1571 1.079127 CCAATTGAGGGACGAGCGT 60.079 57.895 7.12 0.00 0.00 5.07
275 1572 1.084370 CCAATTGAGGGACGAGCGTC 61.084 60.000 14.17 14.17 43.87 5.19
276 1573 0.389817 CAATTGAGGGACGAGCGTCA 60.390 55.000 22.49 4.12 46.20 4.35
277 1574 0.537188 AATTGAGGGACGAGCGTCAT 59.463 50.000 22.49 11.71 46.20 3.06
278 1575 0.179100 ATTGAGGGACGAGCGTCATG 60.179 55.000 22.49 0.00 46.20 3.07
279 1576 2.105128 GAGGGACGAGCGTCATGG 59.895 66.667 22.49 0.00 46.20 3.66
280 1577 2.680352 AGGGACGAGCGTCATGGT 60.680 61.111 22.49 3.14 46.20 3.55
281 1578 2.202756 GGGACGAGCGTCATGGTC 60.203 66.667 22.49 6.53 46.20 4.02
289 1586 4.429212 CGTCATGGTCGCCGGTGA 62.429 66.667 15.21 15.21 0.00 4.02
290 1587 2.186903 GTCATGGTCGCCGGTGAT 59.813 61.111 22.69 1.58 0.00 3.06
291 1588 1.883084 GTCATGGTCGCCGGTGATC 60.883 63.158 22.69 22.16 0.00 2.92
292 1589 2.961721 CATGGTCGCCGGTGATCG 60.962 66.667 22.69 6.96 38.88 3.69
293 1590 4.891727 ATGGTCGCCGGTGATCGC 62.892 66.667 22.69 8.37 37.59 4.58
298 1595 4.812476 CGCCGGTGATCGCCTGAA 62.812 66.667 22.59 0.00 37.59 3.02
299 1596 3.195698 GCCGGTGATCGCCTGAAC 61.196 66.667 22.59 5.93 37.59 3.18
300 1597 2.511600 CCGGTGATCGCCTGAACC 60.512 66.667 22.59 5.68 37.59 3.62
302 1599 2.577059 GGTGATCGCCTGAACCGA 59.423 61.111 18.40 0.00 39.24 4.69
303 1600 1.079405 GGTGATCGCCTGAACCGAA 60.079 57.895 18.40 0.00 38.31 4.30
304 1601 1.084370 GGTGATCGCCTGAACCGAAG 61.084 60.000 18.40 0.00 38.31 3.79
305 1602 1.447838 TGATCGCCTGAACCGAAGC 60.448 57.895 0.00 0.00 38.31 3.86
306 1603 1.153549 GATCGCCTGAACCGAAGCT 60.154 57.895 0.00 0.00 38.31 3.74
307 1604 1.148759 GATCGCCTGAACCGAAGCTC 61.149 60.000 0.00 0.00 38.31 4.09
308 1605 1.608717 ATCGCCTGAACCGAAGCTCT 61.609 55.000 0.00 0.00 38.31 4.09
309 1606 2.097038 CGCCTGAACCGAAGCTCTG 61.097 63.158 0.00 0.00 0.00 3.35
310 1607 1.293498 GCCTGAACCGAAGCTCTGA 59.707 57.895 0.00 0.00 0.00 3.27
311 1608 1.016653 GCCTGAACCGAAGCTCTGAC 61.017 60.000 0.00 0.00 0.00 3.51
312 1609 0.318441 CCTGAACCGAAGCTCTGACA 59.682 55.000 0.00 0.00 0.00 3.58
313 1610 1.423395 CTGAACCGAAGCTCTGACAC 58.577 55.000 0.00 0.00 0.00 3.67
314 1611 0.033504 TGAACCGAAGCTCTGACACC 59.966 55.000 0.00 0.00 0.00 4.16
315 1612 0.033504 GAACCGAAGCTCTGACACCA 59.966 55.000 0.00 0.00 0.00 4.17
316 1613 0.468226 AACCGAAGCTCTGACACCAA 59.532 50.000 0.00 0.00 0.00 3.67
317 1614 0.687354 ACCGAAGCTCTGACACCAAT 59.313 50.000 0.00 0.00 0.00 3.16
318 1615 1.072331 ACCGAAGCTCTGACACCAATT 59.928 47.619 0.00 0.00 0.00 2.32
319 1616 1.466167 CCGAAGCTCTGACACCAATTG 59.534 52.381 0.00 0.00 0.00 2.32
320 1617 2.146342 CGAAGCTCTGACACCAATTGT 58.854 47.619 4.43 0.00 43.10 2.71
321 1618 2.549754 CGAAGCTCTGACACCAATTGTT 59.450 45.455 4.43 0.00 39.17 2.83
322 1619 3.607775 CGAAGCTCTGACACCAATTGTTG 60.608 47.826 4.43 2.60 39.17 3.33
323 1620 2.936202 AGCTCTGACACCAATTGTTGT 58.064 42.857 8.53 8.53 39.17 3.32
324 1621 4.085357 AGCTCTGACACCAATTGTTGTA 57.915 40.909 8.78 0.00 39.17 2.41
325 1622 4.460263 AGCTCTGACACCAATTGTTGTAA 58.540 39.130 8.78 0.35 39.17 2.41
326 1623 4.275936 AGCTCTGACACCAATTGTTGTAAC 59.724 41.667 8.78 0.00 39.17 2.50
327 1624 4.556699 GCTCTGACACCAATTGTTGTAACC 60.557 45.833 8.78 0.00 39.17 2.85
328 1625 3.562141 TCTGACACCAATTGTTGTAACCG 59.438 43.478 8.78 0.00 39.17 4.44
329 1626 3.280295 TGACACCAATTGTTGTAACCGT 58.720 40.909 8.78 0.00 39.17 4.83
330 1627 3.065510 TGACACCAATTGTTGTAACCGTG 59.934 43.478 8.78 7.08 39.17 4.94
331 1628 2.359531 ACACCAATTGTTGTAACCGTGG 59.640 45.455 6.87 6.82 33.09 4.94
332 1629 1.338655 ACCAATTGTTGTAACCGTGGC 59.661 47.619 4.43 0.00 30.51 5.01
333 1630 1.611491 CCAATTGTTGTAACCGTGGCT 59.389 47.619 4.43 0.00 0.00 4.75
334 1631 2.814919 CCAATTGTTGTAACCGTGGCTA 59.185 45.455 4.43 0.00 0.00 3.93
335 1632 3.442273 CCAATTGTTGTAACCGTGGCTAT 59.558 43.478 4.43 0.00 0.00 2.97
336 1633 4.411327 CAATTGTTGTAACCGTGGCTATG 58.589 43.478 0.00 0.00 0.00 2.23
337 1634 1.444836 TGTTGTAACCGTGGCTATGC 58.555 50.000 0.00 0.00 0.00 3.14
350 1647 3.155897 CTATGCCCTAGCTCCACCT 57.844 57.895 0.00 0.00 40.80 4.00
351 1648 0.972883 CTATGCCCTAGCTCCACCTC 59.027 60.000 0.00 0.00 40.80 3.85
352 1649 0.563173 TATGCCCTAGCTCCACCTCT 59.437 55.000 0.00 0.00 40.80 3.69
353 1650 0.762461 ATGCCCTAGCTCCACCTCTC 60.762 60.000 0.00 0.00 40.80 3.20
354 1651 1.075600 GCCCTAGCTCCACCTCTCT 60.076 63.158 0.00 0.00 35.50 3.10
355 1652 1.112916 GCCCTAGCTCCACCTCTCTC 61.113 65.000 0.00 0.00 35.50 3.20
356 1653 0.555769 CCCTAGCTCCACCTCTCTCT 59.444 60.000 0.00 0.00 0.00 3.10
357 1654 1.478654 CCCTAGCTCCACCTCTCTCTC 60.479 61.905 0.00 0.00 0.00 3.20
358 1655 1.214175 CCTAGCTCCACCTCTCTCTCA 59.786 57.143 0.00 0.00 0.00 3.27
359 1656 2.297701 CTAGCTCCACCTCTCTCTCAC 58.702 57.143 0.00 0.00 0.00 3.51
360 1657 0.679640 AGCTCCACCTCTCTCTCACG 60.680 60.000 0.00 0.00 0.00 4.35
361 1658 1.806568 CTCCACCTCTCTCTCACGC 59.193 63.158 0.00 0.00 0.00 5.34
362 1659 0.679640 CTCCACCTCTCTCTCACGCT 60.680 60.000 0.00 0.00 0.00 5.07
363 1660 0.962855 TCCACCTCTCTCTCACGCTG 60.963 60.000 0.00 0.00 0.00 5.18
364 1661 1.153862 CACCTCTCTCTCACGCTGC 60.154 63.158 0.00 0.00 0.00 5.25
365 1662 1.604879 ACCTCTCTCTCACGCTGCA 60.605 57.895 0.00 0.00 0.00 4.41
366 1663 1.153862 CCTCTCTCTCACGCTGCAC 60.154 63.158 0.00 0.00 0.00 4.57
367 1664 1.153862 CTCTCTCTCACGCTGCACC 60.154 63.158 0.00 0.00 0.00 5.01
368 1665 1.594194 CTCTCTCTCACGCTGCACCT 61.594 60.000 0.00 0.00 0.00 4.00
369 1666 1.181741 TCTCTCTCACGCTGCACCTT 61.182 55.000 0.00 0.00 0.00 3.50
370 1667 0.320247 CTCTCTCACGCTGCACCTTT 60.320 55.000 0.00 0.00 0.00 3.11
371 1668 0.319900 TCTCTCACGCTGCACCTTTC 60.320 55.000 0.00 0.00 0.00 2.62
372 1669 0.320247 CTCTCACGCTGCACCTTTCT 60.320 55.000 0.00 0.00 0.00 2.52
373 1670 0.319900 TCTCACGCTGCACCTTTCTC 60.320 55.000 0.00 0.00 0.00 2.87
374 1671 0.320247 CTCACGCTGCACCTTTCTCT 60.320 55.000 0.00 0.00 0.00 3.10
375 1672 0.319900 TCACGCTGCACCTTTCTCTC 60.320 55.000 0.00 0.00 0.00 3.20
376 1673 0.320247 CACGCTGCACCTTTCTCTCT 60.320 55.000 0.00 0.00 0.00 3.10
377 1674 0.394565 ACGCTGCACCTTTCTCTCTT 59.605 50.000 0.00 0.00 0.00 2.85
378 1675 1.202698 ACGCTGCACCTTTCTCTCTTT 60.203 47.619 0.00 0.00 0.00 2.52
379 1676 1.462670 CGCTGCACCTTTCTCTCTTTC 59.537 52.381 0.00 0.00 0.00 2.62
380 1677 2.777094 GCTGCACCTTTCTCTCTTTCT 58.223 47.619 0.00 0.00 0.00 2.52
381 1678 2.741517 GCTGCACCTTTCTCTCTTTCTC 59.258 50.000 0.00 0.00 0.00 2.87
382 1679 3.333804 CTGCACCTTTCTCTCTTTCTCC 58.666 50.000 0.00 0.00 0.00 3.71
383 1680 2.289072 TGCACCTTTCTCTCTTTCTCCG 60.289 50.000 0.00 0.00 0.00 4.63
384 1681 2.028930 GCACCTTTCTCTCTTTCTCCGA 60.029 50.000 0.00 0.00 0.00 4.55
385 1682 3.555168 GCACCTTTCTCTCTTTCTCCGAA 60.555 47.826 0.00 0.00 0.00 4.30
386 1683 3.991121 CACCTTTCTCTCTTTCTCCGAAC 59.009 47.826 0.00 0.00 0.00 3.95
387 1684 3.007074 ACCTTTCTCTCTTTCTCCGAACC 59.993 47.826 0.00 0.00 0.00 3.62
388 1685 3.006967 CCTTTCTCTCTTTCTCCGAACCA 59.993 47.826 0.00 0.00 0.00 3.67
389 1686 3.944055 TTCTCTCTTTCTCCGAACCAG 57.056 47.619 0.00 0.00 0.00 4.00
390 1687 3.156288 TCTCTCTTTCTCCGAACCAGA 57.844 47.619 0.00 0.00 0.00 3.86
391 1688 3.702792 TCTCTCTTTCTCCGAACCAGAT 58.297 45.455 0.00 0.00 0.00 2.90
392 1689 3.697045 TCTCTCTTTCTCCGAACCAGATC 59.303 47.826 0.00 0.00 0.00 2.75
393 1690 3.431415 TCTCTTTCTCCGAACCAGATCA 58.569 45.455 0.00 0.00 0.00 2.92
394 1691 3.832490 TCTCTTTCTCCGAACCAGATCAA 59.168 43.478 0.00 0.00 0.00 2.57
395 1692 3.926616 TCTTTCTCCGAACCAGATCAAC 58.073 45.455 0.00 0.00 0.00 3.18
396 1693 3.323691 TCTTTCTCCGAACCAGATCAACA 59.676 43.478 0.00 0.00 0.00 3.33
397 1694 3.319137 TTCTCCGAACCAGATCAACAG 57.681 47.619 0.00 0.00 0.00 3.16
398 1695 2.525368 TCTCCGAACCAGATCAACAGA 58.475 47.619 0.00 0.00 0.00 3.41
399 1696 2.897326 TCTCCGAACCAGATCAACAGAA 59.103 45.455 0.00 0.00 0.00 3.02
400 1697 3.056536 TCTCCGAACCAGATCAACAGAAG 60.057 47.826 0.00 0.00 0.00 2.85
401 1698 2.897326 TCCGAACCAGATCAACAGAAGA 59.103 45.455 0.00 0.00 0.00 2.87
402 1699 3.323691 TCCGAACCAGATCAACAGAAGAA 59.676 43.478 0.00 0.00 0.00 2.52
403 1700 3.681897 CCGAACCAGATCAACAGAAGAAG 59.318 47.826 0.00 0.00 0.00 2.85
404 1701 3.681897 CGAACCAGATCAACAGAAGAAGG 59.318 47.826 0.00 0.00 0.00 3.46
405 1702 4.561530 CGAACCAGATCAACAGAAGAAGGA 60.562 45.833 0.00 0.00 0.00 3.36
406 1703 4.550076 ACCAGATCAACAGAAGAAGGAG 57.450 45.455 0.00 0.00 0.00 3.69
407 1704 3.262915 ACCAGATCAACAGAAGAAGGAGG 59.737 47.826 0.00 0.00 0.00 4.30
408 1705 3.517100 CCAGATCAACAGAAGAAGGAGGA 59.483 47.826 0.00 0.00 0.00 3.71
409 1706 4.019860 CCAGATCAACAGAAGAAGGAGGAA 60.020 45.833 0.00 0.00 0.00 3.36
410 1707 5.177326 CAGATCAACAGAAGAAGGAGGAAG 58.823 45.833 0.00 0.00 0.00 3.46
411 1708 4.224818 AGATCAACAGAAGAAGGAGGAAGG 59.775 45.833 0.00 0.00 0.00 3.46
412 1709 3.587498 TCAACAGAAGAAGGAGGAAGGA 58.413 45.455 0.00 0.00 0.00 3.36
413 1710 4.171234 TCAACAGAAGAAGGAGGAAGGAT 58.829 43.478 0.00 0.00 0.00 3.24
414 1711 5.342017 TCAACAGAAGAAGGAGGAAGGATA 58.658 41.667 0.00 0.00 0.00 2.59
415 1712 5.785423 TCAACAGAAGAAGGAGGAAGGATAA 59.215 40.000 0.00 0.00 0.00 1.75
416 1713 5.948742 ACAGAAGAAGGAGGAAGGATAAG 57.051 43.478 0.00 0.00 0.00 1.73
417 1714 4.719273 ACAGAAGAAGGAGGAAGGATAAGG 59.281 45.833 0.00 0.00 0.00 2.69
418 1715 4.965532 CAGAAGAAGGAGGAAGGATAAGGA 59.034 45.833 0.00 0.00 0.00 3.36
419 1716 5.426833 CAGAAGAAGGAGGAAGGATAAGGAA 59.573 44.000 0.00 0.00 0.00 3.36
420 1717 5.665360 AGAAGAAGGAGGAAGGATAAGGAAG 59.335 44.000 0.00 0.00 0.00 3.46
421 1718 5.227917 AGAAGGAGGAAGGATAAGGAAGA 57.772 43.478 0.00 0.00 0.00 2.87
422 1719 5.604752 AGAAGGAGGAAGGATAAGGAAGAA 58.395 41.667 0.00 0.00 0.00 2.52
423 1720 5.427157 AGAAGGAGGAAGGATAAGGAAGAAC 59.573 44.000 0.00 0.00 0.00 3.01
424 1721 4.699994 AGGAGGAAGGATAAGGAAGAACA 58.300 43.478 0.00 0.00 0.00 3.18
425 1722 5.101529 AGGAGGAAGGATAAGGAAGAACAA 58.898 41.667 0.00 0.00 0.00 2.83
426 1723 5.190726 AGGAGGAAGGATAAGGAAGAACAAG 59.809 44.000 0.00 0.00 0.00 3.16
427 1724 5.432645 GAGGAAGGATAAGGAAGAACAAGG 58.567 45.833 0.00 0.00 0.00 3.61
428 1725 5.101529 AGGAAGGATAAGGAAGAACAAGGA 58.898 41.667 0.00 0.00 0.00 3.36
429 1726 5.045505 AGGAAGGATAAGGAAGAACAAGGAC 60.046 44.000 0.00 0.00 0.00 3.85
430 1727 5.280521 GGAAGGATAAGGAAGAACAAGGACA 60.281 44.000 0.00 0.00 0.00 4.02
431 1728 5.167303 AGGATAAGGAAGAACAAGGACAC 57.833 43.478 0.00 0.00 0.00 3.67
432 1729 3.933332 GGATAAGGAAGAACAAGGACACG 59.067 47.826 0.00 0.00 0.00 4.49
433 1730 4.322499 GGATAAGGAAGAACAAGGACACGA 60.322 45.833 0.00 0.00 0.00 4.35
434 1731 2.821991 AGGAAGAACAAGGACACGAG 57.178 50.000 0.00 0.00 0.00 4.18
435 1732 1.149148 GGAAGAACAAGGACACGAGC 58.851 55.000 0.00 0.00 0.00 5.03
436 1733 1.540363 GGAAGAACAAGGACACGAGCA 60.540 52.381 0.00 0.00 0.00 4.26
437 1734 2.210116 GAAGAACAAGGACACGAGCAA 58.790 47.619 0.00 0.00 0.00 3.91
438 1735 1.871080 AGAACAAGGACACGAGCAAG 58.129 50.000 0.00 0.00 0.00 4.01
439 1736 1.139058 AGAACAAGGACACGAGCAAGT 59.861 47.619 0.00 0.00 0.00 3.16
440 1737 1.940613 GAACAAGGACACGAGCAAGTT 59.059 47.619 0.00 0.00 0.00 2.66
441 1738 2.038387 ACAAGGACACGAGCAAGTTT 57.962 45.000 0.00 0.00 0.00 2.66
442 1739 1.940613 ACAAGGACACGAGCAAGTTTC 59.059 47.619 0.00 0.00 0.00 2.78
443 1740 2.213499 CAAGGACACGAGCAAGTTTCT 58.787 47.619 0.00 0.00 0.00 2.52
444 1741 2.614057 CAAGGACACGAGCAAGTTTCTT 59.386 45.455 0.00 0.00 0.00 2.52
445 1742 2.919228 AGGACACGAGCAAGTTTCTTT 58.081 42.857 0.00 0.00 0.00 2.52
446 1743 2.872858 AGGACACGAGCAAGTTTCTTTC 59.127 45.455 0.00 0.00 0.00 2.62
447 1744 2.031944 GGACACGAGCAAGTTTCTTTCC 60.032 50.000 0.00 0.00 0.00 3.13
448 1745 2.612212 GACACGAGCAAGTTTCTTTCCA 59.388 45.455 0.00 0.00 0.00 3.53
449 1746 2.614057 ACACGAGCAAGTTTCTTTCCAG 59.386 45.455 0.00 0.00 0.00 3.86
450 1747 2.031682 CACGAGCAAGTTTCTTTCCAGG 60.032 50.000 0.00 0.00 0.00 4.45
451 1748 2.222027 CGAGCAAGTTTCTTTCCAGGT 58.778 47.619 0.00 0.00 0.00 4.00
452 1749 2.031682 CGAGCAAGTTTCTTTCCAGGTG 60.032 50.000 0.00 0.00 0.00 4.00
453 1750 1.683385 AGCAAGTTTCTTTCCAGGTGC 59.317 47.619 0.00 0.00 0.00 5.01
454 1751 1.408702 GCAAGTTTCTTTCCAGGTGCA 59.591 47.619 0.00 0.00 0.00 4.57
455 1752 2.799562 GCAAGTTTCTTTCCAGGTGCAC 60.800 50.000 8.80 8.80 0.00 4.57
456 1753 1.308998 AGTTTCTTTCCAGGTGCACG 58.691 50.000 11.45 0.00 0.00 5.34
457 1754 1.134220 AGTTTCTTTCCAGGTGCACGA 60.134 47.619 11.45 0.00 0.00 4.35
458 1755 1.673920 GTTTCTTTCCAGGTGCACGAA 59.326 47.619 11.45 6.15 0.00 3.85
459 1756 1.305201 TTCTTTCCAGGTGCACGAAC 58.695 50.000 11.45 0.00 0.00 3.95
460 1757 0.179234 TCTTTCCAGGTGCACGAACA 59.821 50.000 11.45 0.00 0.00 3.18
461 1758 0.307760 CTTTCCAGGTGCACGAACAC 59.692 55.000 11.45 0.00 39.94 3.32
489 1786 2.049156 TGAGCACGAACTCAGCCG 60.049 61.111 7.84 0.00 41.72 5.52
492 1789 3.044305 GCACGAACTCAGCCGCTT 61.044 61.111 0.00 0.00 0.00 4.68
493 1790 2.607892 GCACGAACTCAGCCGCTTT 61.608 57.895 0.00 0.00 0.00 3.51
495 1792 0.946221 CACGAACTCAGCCGCTTTCT 60.946 55.000 0.00 0.00 0.00 2.52
496 1793 0.249911 ACGAACTCAGCCGCTTTCTT 60.250 50.000 0.00 0.00 0.00 2.52
513 1810 0.456221 CTTGCGATACACGGAGGACT 59.544 55.000 0.00 0.00 44.01 3.85
514 1811 1.674441 CTTGCGATACACGGAGGACTA 59.326 52.381 0.00 0.00 44.01 2.59
515 1812 1.306148 TGCGATACACGGAGGACTAG 58.694 55.000 0.00 0.00 42.83 2.57
516 1813 0.040246 GCGATACACGGAGGACTAGC 60.040 60.000 0.00 0.00 42.83 3.42
517 1814 0.235144 CGATACACGGAGGACTAGCG 59.765 60.000 0.00 0.00 38.46 4.26
518 1815 1.590932 GATACACGGAGGACTAGCGA 58.409 55.000 0.00 0.00 0.00 4.93
519 1816 2.152830 GATACACGGAGGACTAGCGAT 58.847 52.381 0.00 0.00 0.00 4.58
526 1827 3.188048 ACGGAGGACTAGCGATTTATACG 59.812 47.826 0.00 0.00 0.00 3.06
532 1833 2.542409 GCGATTTATACGCGCGCA 59.458 55.556 32.58 20.08 46.05 6.09
534 1835 1.556011 CGATTTATACGCGCGCACA 59.444 52.632 32.58 18.50 0.00 4.57
677 1979 4.414956 ACCCCTCCGGCTCCATCA 62.415 66.667 0.00 0.00 33.26 3.07
684 1986 2.046023 CGGCTCCATCACCAGCAA 60.046 61.111 0.00 0.00 37.38 3.91
688 1990 0.610232 GCTCCATCACCAGCAAACCT 60.610 55.000 0.00 0.00 35.56 3.50
690 1992 2.359900 CTCCATCACCAGCAAACCTAC 58.640 52.381 0.00 0.00 0.00 3.18
720 2022 2.607750 ACTCCCTCGGCCACACAT 60.608 61.111 2.24 0.00 0.00 3.21
723 2025 1.610967 TCCCTCGGCCACACATACA 60.611 57.895 2.24 0.00 0.00 2.29
724 2026 0.980754 TCCCTCGGCCACACATACAT 60.981 55.000 2.24 0.00 0.00 2.29
725 2027 0.815213 CCCTCGGCCACACATACATG 60.815 60.000 2.24 0.00 0.00 3.21
726 2028 1.439353 CCTCGGCCACACATACATGC 61.439 60.000 2.24 0.00 0.00 4.06
727 2029 0.744057 CTCGGCCACACATACATGCA 60.744 55.000 2.24 0.00 0.00 3.96
728 2030 1.024046 TCGGCCACACATACATGCAC 61.024 55.000 2.24 0.00 0.00 4.57
729 2031 1.809207 GGCCACACATACATGCACC 59.191 57.895 0.00 0.00 0.00 5.01
731 2033 1.992233 GCCACACATACATGCACCCG 61.992 60.000 0.00 0.00 0.00 5.28
738 2040 2.947938 ATACATGCACCCGAGCCTGC 62.948 60.000 0.00 0.00 34.08 4.85
790 2095 4.090057 GCGCACGCCTTCAAGACC 62.090 66.667 0.30 0.00 34.56 3.85
791 2096 3.777925 CGCACGCCTTCAAGACCG 61.778 66.667 0.00 0.00 0.00 4.79
792 2097 4.090057 GCACGCCTTCAAGACCGC 62.090 66.667 0.00 0.00 0.00 5.68
794 2099 3.936203 ACGCCTTCAAGACCGCCA 61.936 61.111 0.00 0.00 0.00 5.69
807 2133 1.444250 CCGCCACGGCTTATTCCTA 59.556 57.895 6.48 0.00 41.17 2.94
808 2134 0.179067 CCGCCACGGCTTATTCCTAA 60.179 55.000 6.48 0.00 41.17 2.69
809 2135 0.935196 CGCCACGGCTTATTCCTAAC 59.065 55.000 6.48 0.00 39.32 2.34
811 2137 2.572290 GCCACGGCTTATTCCTAACAT 58.428 47.619 0.00 0.00 38.26 2.71
812 2138 2.949644 GCCACGGCTTATTCCTAACATT 59.050 45.455 0.00 0.00 38.26 2.71
814 2140 4.733523 GCCACGGCTTATTCCTAACATTTG 60.734 45.833 0.00 0.00 38.26 2.32
816 2142 4.096382 CACGGCTTATTCCTAACATTTGCT 59.904 41.667 0.00 0.00 0.00 3.91
817 2143 4.096382 ACGGCTTATTCCTAACATTTGCTG 59.904 41.667 0.00 0.00 0.00 4.41
819 2145 4.098501 GGCTTATTCCTAACATTTGCTGCT 59.901 41.667 0.00 0.00 0.00 4.24
820 2146 5.039333 GCTTATTCCTAACATTTGCTGCTG 58.961 41.667 0.00 0.00 0.00 4.41
821 2147 5.581126 TTATTCCTAACATTTGCTGCTGG 57.419 39.130 0.00 0.00 0.00 4.85
823 2149 0.179156 CCTAACATTTGCTGCTGGCG 60.179 55.000 0.00 0.00 45.43 5.69
824 2150 0.179156 CTAACATTTGCTGCTGGCGG 60.179 55.000 0.00 0.00 45.43 6.13
825 2151 1.594194 TAACATTTGCTGCTGGCGGG 61.594 55.000 0.00 0.00 45.43 6.13
826 2152 3.376078 CATTTGCTGCTGGCGGGT 61.376 61.111 0.00 0.00 45.43 5.28
827 2153 3.376078 ATTTGCTGCTGGCGGGTG 61.376 61.111 0.00 0.00 45.43 4.61
828 2154 3.866379 ATTTGCTGCTGGCGGGTGA 62.866 57.895 0.00 0.00 45.43 4.02
829 2155 3.866379 TTTGCTGCTGGCGGGTGAT 62.866 57.895 0.00 0.00 45.43 3.06
830 2156 4.783621 TGCTGCTGGCGGGTGATC 62.784 66.667 0.00 0.00 45.43 2.92
863 2189 0.768622 ACCTGACGAATCCCCAAACA 59.231 50.000 0.00 0.00 0.00 2.83
867 2193 3.258123 CCTGACGAATCCCCAAACAAAAT 59.742 43.478 0.00 0.00 0.00 1.82
871 2197 5.536916 TGACGAATCCCCAAACAAAATAAGT 59.463 36.000 0.00 0.00 0.00 2.24
872 2198 6.020971 ACGAATCCCCAAACAAAATAAGTC 57.979 37.500 0.00 0.00 0.00 3.01
873 2199 5.536916 ACGAATCCCCAAACAAAATAAGTCA 59.463 36.000 0.00 0.00 0.00 3.41
874 2200 6.092748 CGAATCCCCAAACAAAATAAGTCAG 58.907 40.000 0.00 0.00 0.00 3.51
875 2201 4.864704 TCCCCAAACAAAATAAGTCAGC 57.135 40.909 0.00 0.00 0.00 4.26
876 2202 4.479158 TCCCCAAACAAAATAAGTCAGCT 58.521 39.130 0.00 0.00 0.00 4.24
878 2204 4.280677 CCCCAAACAAAATAAGTCAGCTGA 59.719 41.667 13.74 13.74 0.00 4.26
879 2205 5.047092 CCCCAAACAAAATAAGTCAGCTGAT 60.047 40.000 21.47 7.45 0.00 2.90
880 2206 6.152661 CCCCAAACAAAATAAGTCAGCTGATA 59.847 38.462 21.47 9.76 0.00 2.15
881 2207 7.029563 CCCAAACAAAATAAGTCAGCTGATAC 58.970 38.462 21.47 8.72 0.00 2.24
882 2208 7.309133 CCCAAACAAAATAAGTCAGCTGATACA 60.309 37.037 21.47 8.13 0.00 2.29
916 2242 6.838198 AAAACTATTTTTGTTCTTTCCCGC 57.162 33.333 0.00 0.00 33.45 6.13
1078 2407 3.747976 GTGTGGCGGCCATGGTTC 61.748 66.667 26.68 12.41 35.28 3.62
1113 2442 1.534729 TCTCTCTGTCAACAGCGCTA 58.465 50.000 10.99 0.00 43.46 4.26
1125 2454 1.153127 AGCGCTACTAGCCGTCTCT 60.153 57.895 8.99 0.00 38.18 3.10
1135 2464 3.285371 CCGTCTCTGGCCTACGTT 58.715 61.111 3.32 0.00 34.90 3.99
1740 3703 4.988598 CACGCGCCACCCAGTCTT 62.989 66.667 5.73 0.00 0.00 3.01
1849 3830 1.795286 GTCGCCTACGTACGCTACTAT 59.205 52.381 16.72 0.00 41.18 2.12
1902 3894 9.945904 AGAATATTTTCGAACTTACTTTCTCCT 57.054 29.630 0.00 0.00 36.93 3.69
1982 3978 5.201910 CGTTTGAGCGACAAGTAATTTCAA 58.798 37.500 0.00 0.00 39.77 2.69
1994 3990 8.642908 ACAAGTAATTTCAAACAAAGGCTTAC 57.357 30.769 0.00 0.00 0.00 2.34
1997 3993 8.156994 AGTAATTTCAAACAAAGGCTTACGTA 57.843 30.769 0.00 0.00 0.00 3.57
1998 3994 8.071967 AGTAATTTCAAACAAAGGCTTACGTAC 58.928 33.333 0.00 0.00 0.00 3.67
1999 3995 4.455917 TTCAAACAAAGGCTTACGTACG 57.544 40.909 15.01 15.01 0.00 3.67
2000 3996 3.456280 TCAAACAAAGGCTTACGTACGT 58.544 40.909 25.98 25.98 0.00 3.57
2001 3997 3.245754 TCAAACAAAGGCTTACGTACGTG 59.754 43.478 30.25 15.89 0.00 4.49
2005 4001 1.355971 AAGGCTTACGTACGTGCATG 58.644 50.000 30.25 17.05 0.00 4.06
2010 4006 3.423206 GGCTTACGTACGTGCATGTATAC 59.577 47.826 30.25 11.54 0.00 1.47
2014 4010 6.580041 GCTTACGTACGTGCATGTATACTATT 59.420 38.462 30.25 0.00 0.00 1.73
2024 4021 7.812669 CGTGCATGTATACTATTATTCCTCACA 59.187 37.037 4.17 0.00 0.00 3.58
2305 4918 3.434319 CAGGCATGGCGCGAAGTT 61.434 61.111 12.10 0.00 43.84 2.66
2428 5041 2.809601 GTCCGCAACGTGCTCGAT 60.810 61.111 16.04 0.00 42.25 3.59
2477 5090 4.277009 TTGGCATGCCGTGGGTGA 62.277 61.111 30.87 9.56 39.42 4.02
2515 5128 5.111293 ACAAGTCCAAACATGAGCAAAAAG 58.889 37.500 0.00 0.00 0.00 2.27
2542 5161 2.839486 TGCTCAAGTCCGTCAGAATT 57.161 45.000 0.00 0.00 31.58 2.17
2587 5209 1.742761 CCGTAGAGGTAAGACGACCA 58.257 55.000 0.00 0.00 42.47 4.02
2616 5238 1.630244 CGAAGCACGCAAGAGAAGGG 61.630 60.000 0.00 0.00 43.62 3.95
2680 5302 3.951680 ACGGAACAGAAATGGTCAAGTTT 59.048 39.130 0.00 0.00 29.85 2.66
2729 5351 2.069165 GAAGGTGAAGCCCAGTGGGT 62.069 60.000 29.23 10.92 46.51 4.51
2762 5384 2.168521 GGGAGCTACATGTGCTTGAGTA 59.831 50.000 19.31 0.00 41.30 2.59
2835 5457 1.405526 GGTGGCATTGAACGAGCTCTA 60.406 52.381 12.85 0.00 0.00 2.43
2938 5560 6.631766 GCCTAAGAATAGTGTACATGGTGGAA 60.632 42.308 0.00 0.00 0.00 3.53
2955 5577 5.428457 TGGTGGAATGAGATTACAGTACCAT 59.572 40.000 0.00 0.00 32.76 3.55
3006 5628 5.755861 GGAGTGAGATTACAGTTATGGAAGC 59.244 44.000 0.00 0.00 35.79 3.86
3039 5675 2.439409 TGTGACCCAATTGATCTGCAG 58.561 47.619 7.63 7.63 0.00 4.41
3086 5725 7.628580 GCCCTTAAAGCCAGAAAATACTACAAG 60.629 40.741 0.00 0.00 0.00 3.16
3092 5731 6.624423 AGCCAGAAAATACTACAAGCAAATG 58.376 36.000 0.00 0.00 0.00 2.32
3098 5737 7.382218 AGAAAATACTACAAGCAAATGTGTTGC 59.618 33.333 2.85 2.85 45.22 4.17
3204 5846 4.377841 GCGAGCCAATGTCTCTTATATTGC 60.378 45.833 0.00 0.00 35.85 3.56
3238 5880 2.808543 CCACTCAAACTGGTAGTTCAGC 59.191 50.000 0.00 0.00 37.47 4.26
3292 5936 8.062065 TGTCTTGGTTTTGTAAATCTGAAAGT 57.938 30.769 0.00 0.00 33.76 2.66
3473 6119 2.132996 CCAAACAAGCCCAGTGCCA 61.133 57.895 0.00 0.00 42.71 4.92
3482 6128 1.456892 CCCAGTGCCATGGATGCAT 60.457 57.895 18.40 0.00 43.57 3.96
3520 6166 0.599060 TCGTGTTCCATACGCACTCA 59.401 50.000 0.00 0.00 41.08 3.41
3522 6168 1.999735 CGTGTTCCATACGCACTCAAT 59.000 47.619 0.00 0.00 37.08 2.57
3712 6358 4.226620 TGGGAAGATGGTAAAAGTCCTACC 59.773 45.833 0.00 0.00 39.51 3.18
3903 6554 8.279800 TGGAATTTGTATTTATATTCACGCTCG 58.720 33.333 0.00 0.00 0.00 5.03
3904 6555 7.268447 GGAATTTGTATTTATATTCACGCTCGC 59.732 37.037 0.00 0.00 0.00 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 8.144155 TCTTCGTTTTTCAGTTTTTGGTTTTT 57.856 26.923 0.00 0.00 0.00 1.94
29 30 7.716768 TCTTCGTTTTTCAGTTTTTGGTTTT 57.283 28.000 0.00 0.00 0.00 2.43
30 31 7.899178 ATCTTCGTTTTTCAGTTTTTGGTTT 57.101 28.000 0.00 0.00 0.00 3.27
31 32 7.899178 AATCTTCGTTTTTCAGTTTTTGGTT 57.101 28.000 0.00 0.00 0.00 3.67
32 33 7.899178 AAATCTTCGTTTTTCAGTTTTTGGT 57.101 28.000 0.00 0.00 0.00 3.67
33 34 7.691877 CCAAAATCTTCGTTTTTCAGTTTTTGG 59.308 33.333 14.68 14.68 43.83 3.28
34 35 8.227119 ACCAAAATCTTCGTTTTTCAGTTTTTG 58.773 29.630 0.00 0.00 37.16 2.44
35 36 8.317891 ACCAAAATCTTCGTTTTTCAGTTTTT 57.682 26.923 0.00 0.00 0.00 1.94
36 37 7.899178 ACCAAAATCTTCGTTTTTCAGTTTT 57.101 28.000 0.00 0.00 0.00 2.43
37 38 7.899178 AACCAAAATCTTCGTTTTTCAGTTT 57.101 28.000 0.00 0.00 0.00 2.66
38 39 8.248253 ACTAACCAAAATCTTCGTTTTTCAGTT 58.752 29.630 0.00 0.00 0.00 3.16
39 40 7.768240 ACTAACCAAAATCTTCGTTTTTCAGT 58.232 30.769 0.00 0.00 0.00 3.41
40 41 8.628882 AACTAACCAAAATCTTCGTTTTTCAG 57.371 30.769 0.00 0.00 0.00 3.02
41 42 8.463607 AGAACTAACCAAAATCTTCGTTTTTCA 58.536 29.630 0.00 0.00 0.00 2.69
42 43 8.851960 AGAACTAACCAAAATCTTCGTTTTTC 57.148 30.769 0.00 0.00 0.00 2.29
43 44 9.647797 AAAGAACTAACCAAAATCTTCGTTTTT 57.352 25.926 0.00 0.00 30.43 1.94
44 45 9.647797 AAAAGAACTAACCAAAATCTTCGTTTT 57.352 25.926 0.00 0.00 30.43 2.43
45 46 9.647797 AAAAAGAACTAACCAAAATCTTCGTTT 57.352 25.926 0.00 0.00 30.43 3.60
69 70 4.065789 AGTGCAAAACAAAACCGGAAAAA 58.934 34.783 9.46 0.00 0.00 1.94
70 71 3.433615 CAGTGCAAAACAAAACCGGAAAA 59.566 39.130 9.46 0.00 0.00 2.29
71 72 2.996621 CAGTGCAAAACAAAACCGGAAA 59.003 40.909 9.46 0.00 0.00 3.13
72 73 2.611518 CAGTGCAAAACAAAACCGGAA 58.388 42.857 9.46 0.00 0.00 4.30
73 74 1.737363 GCAGTGCAAAACAAAACCGGA 60.737 47.619 9.46 0.00 0.00 5.14
74 75 0.649993 GCAGTGCAAAACAAAACCGG 59.350 50.000 11.09 0.00 0.00 5.28
75 76 0.649993 GGCAGTGCAAAACAAAACCG 59.350 50.000 18.61 0.00 0.00 4.44
76 77 1.665169 CAGGCAGTGCAAAACAAAACC 59.335 47.619 18.61 0.00 0.00 3.27
77 78 2.348362 GTCAGGCAGTGCAAAACAAAAC 59.652 45.455 18.61 0.00 0.00 2.43
78 79 2.233431 AGTCAGGCAGTGCAAAACAAAA 59.767 40.909 18.61 0.00 0.00 2.44
79 80 1.824230 AGTCAGGCAGTGCAAAACAAA 59.176 42.857 18.61 0.00 0.00 2.83
80 81 1.473258 AGTCAGGCAGTGCAAAACAA 58.527 45.000 18.61 0.00 0.00 2.83
81 82 2.340210 TAGTCAGGCAGTGCAAAACA 57.660 45.000 18.61 0.00 0.00 2.83
82 83 3.923017 AATAGTCAGGCAGTGCAAAAC 57.077 42.857 18.61 10.91 0.00 2.43
83 84 3.552684 GCAAATAGTCAGGCAGTGCAAAA 60.553 43.478 18.61 0.00 0.00 2.44
84 85 2.030007 GCAAATAGTCAGGCAGTGCAAA 60.030 45.455 18.61 0.00 0.00 3.68
85 86 1.541147 GCAAATAGTCAGGCAGTGCAA 59.459 47.619 18.61 0.00 0.00 4.08
86 87 1.167851 GCAAATAGTCAGGCAGTGCA 58.832 50.000 18.61 0.00 0.00 4.57
87 88 0.453390 GGCAAATAGTCAGGCAGTGC 59.547 55.000 6.55 6.55 0.00 4.40
88 89 0.729116 CGGCAAATAGTCAGGCAGTG 59.271 55.000 0.00 0.00 0.00 3.66
89 90 1.026718 GCGGCAAATAGTCAGGCAGT 61.027 55.000 0.00 0.00 0.00 4.40
90 91 1.718757 GGCGGCAAATAGTCAGGCAG 61.719 60.000 3.07 0.00 0.00 4.85
91 92 1.748879 GGCGGCAAATAGTCAGGCA 60.749 57.895 3.07 0.00 0.00 4.75
92 93 2.481471 GGGCGGCAAATAGTCAGGC 61.481 63.158 12.47 0.00 0.00 4.85
93 94 2.180204 CGGGCGGCAAATAGTCAGG 61.180 63.158 12.47 0.00 0.00 3.86
94 95 2.823829 GCGGGCGGCAAATAGTCAG 61.824 63.158 12.47 0.00 42.87 3.51
95 96 2.822255 GCGGGCGGCAAATAGTCA 60.822 61.111 12.47 0.00 42.87 3.41
108 109 1.933115 AACTATTTGCCGCTTGCGGG 61.933 55.000 31.07 17.68 45.60 6.13
109 110 0.109319 AAACTATTTGCCGCTTGCGG 60.109 50.000 27.32 27.32 45.60 5.69
110 111 2.535934 TAAACTATTTGCCGCTTGCG 57.464 45.000 8.14 8.14 45.60 4.85
111 112 3.115554 CCATAAACTATTTGCCGCTTGC 58.884 45.455 0.00 0.00 41.77 4.01
112 113 3.115554 GCCATAAACTATTTGCCGCTTG 58.884 45.455 0.00 0.00 0.00 4.01
113 114 2.757868 TGCCATAAACTATTTGCCGCTT 59.242 40.909 0.00 0.00 0.00 4.68
114 115 2.374184 TGCCATAAACTATTTGCCGCT 58.626 42.857 0.00 0.00 0.00 5.52
115 116 2.861462 TGCCATAAACTATTTGCCGC 57.139 45.000 0.00 0.00 0.00 6.53
116 117 3.705604 CCTTGCCATAAACTATTTGCCG 58.294 45.455 0.00 0.00 0.00 5.69
143 144 0.178767 CTGGCCCAACTCATCGATGA 59.821 55.000 25.80 25.80 35.16 2.92
145 146 1.153086 GCTGGCCCAACTCATCGAT 60.153 57.895 0.00 0.00 0.00 3.59
243 1540 2.080693 TCAATTGGGAATTCGTCGGTG 58.919 47.619 5.42 0.00 0.00 4.94
244 1541 2.356135 CTCAATTGGGAATTCGTCGGT 58.644 47.619 0.00 0.00 0.00 4.69
245 1542 1.670811 CCTCAATTGGGAATTCGTCGG 59.329 52.381 6.97 0.00 0.00 4.79
256 1553 1.079127 ACGCTCGTCCCTCAATTGG 60.079 57.895 5.42 0.00 0.00 3.16
257 1554 0.389817 TGACGCTCGTCCCTCAATTG 60.390 55.000 18.23 0.00 43.97 2.32
258 1555 0.537188 ATGACGCTCGTCCCTCAATT 59.463 50.000 18.23 0.00 43.97 2.32
259 1556 0.179100 CATGACGCTCGTCCCTCAAT 60.179 55.000 18.23 3.58 43.97 2.57
260 1557 1.215382 CATGACGCTCGTCCCTCAA 59.785 57.895 18.23 1.33 43.97 3.02
261 1558 2.710902 CCATGACGCTCGTCCCTCA 61.711 63.158 18.23 2.32 43.97 3.86
262 1559 2.105128 CCATGACGCTCGTCCCTC 59.895 66.667 18.23 0.00 43.97 4.30
263 1560 2.680352 ACCATGACGCTCGTCCCT 60.680 61.111 18.23 4.64 43.97 4.20
264 1561 2.202756 GACCATGACGCTCGTCCC 60.203 66.667 18.23 0.00 43.97 4.46
265 1562 2.579787 CGACCATGACGCTCGTCC 60.580 66.667 18.23 3.28 43.97 4.79
272 1569 3.716539 ATCACCGGCGACCATGACG 62.717 63.158 9.30 0.58 0.00 4.35
273 1570 1.883084 GATCACCGGCGACCATGAC 60.883 63.158 9.30 0.00 0.00 3.06
274 1571 2.499205 GATCACCGGCGACCATGA 59.501 61.111 9.30 7.04 0.00 3.07
275 1572 2.961721 CGATCACCGGCGACCATG 60.962 66.667 9.30 0.74 33.91 3.66
276 1573 4.891727 GCGATCACCGGCGACCAT 62.892 66.667 9.30 0.00 39.04 3.55
283 1580 2.511600 GGTTCAGGCGATCACCGG 60.512 66.667 0.00 0.00 39.04 5.28
284 1581 2.885644 CGGTTCAGGCGATCACCG 60.886 66.667 5.75 5.75 45.75 4.94
285 1582 1.079405 TTCGGTTCAGGCGATCACC 60.079 57.895 0.00 0.00 0.00 4.02
286 1583 1.696832 GCTTCGGTTCAGGCGATCAC 61.697 60.000 0.00 0.00 0.00 3.06
287 1584 1.447838 GCTTCGGTTCAGGCGATCA 60.448 57.895 0.00 0.00 0.00 2.92
288 1585 1.148759 GAGCTTCGGTTCAGGCGATC 61.149 60.000 0.00 0.00 0.00 3.69
289 1586 1.153549 GAGCTTCGGTTCAGGCGAT 60.154 57.895 0.00 0.00 0.00 4.58
290 1587 2.261671 GAGCTTCGGTTCAGGCGA 59.738 61.111 0.00 0.00 0.00 5.54
291 1588 2.097038 CAGAGCTTCGGTTCAGGCG 61.097 63.158 0.00 0.00 0.00 5.52
292 1589 1.016653 GTCAGAGCTTCGGTTCAGGC 61.017 60.000 0.00 0.00 0.00 4.85
293 1590 0.318441 TGTCAGAGCTTCGGTTCAGG 59.682 55.000 0.00 0.00 0.00 3.86
294 1591 1.423395 GTGTCAGAGCTTCGGTTCAG 58.577 55.000 0.00 0.00 0.00 3.02
295 1592 0.033504 GGTGTCAGAGCTTCGGTTCA 59.966 55.000 0.00 0.00 0.00 3.18
296 1593 0.033504 TGGTGTCAGAGCTTCGGTTC 59.966 55.000 0.00 0.00 0.00 3.62
297 1594 0.468226 TTGGTGTCAGAGCTTCGGTT 59.532 50.000 0.00 0.00 0.00 4.44
298 1595 0.687354 ATTGGTGTCAGAGCTTCGGT 59.313 50.000 0.00 0.00 0.00 4.69
299 1596 1.466167 CAATTGGTGTCAGAGCTTCGG 59.534 52.381 0.00 0.00 0.00 4.30
300 1597 2.146342 ACAATTGGTGTCAGAGCTTCG 58.854 47.619 10.83 0.00 34.38 3.79
301 1598 3.316308 ACAACAATTGGTGTCAGAGCTTC 59.684 43.478 23.45 0.00 43.59 3.86
302 1599 3.290710 ACAACAATTGGTGTCAGAGCTT 58.709 40.909 23.45 0.00 43.59 3.74
303 1600 2.936202 ACAACAATTGGTGTCAGAGCT 58.064 42.857 23.45 0.00 43.59 4.09
304 1601 4.537015 GTTACAACAATTGGTGTCAGAGC 58.463 43.478 31.54 13.62 43.59 4.09
305 1602 4.319477 CGGTTACAACAATTGGTGTCAGAG 60.319 45.833 31.54 17.78 43.59 3.35
306 1603 3.562141 CGGTTACAACAATTGGTGTCAGA 59.438 43.478 31.54 16.40 43.59 3.27
307 1604 3.314080 ACGGTTACAACAATTGGTGTCAG 59.686 43.478 31.54 20.44 43.59 3.51
308 1605 3.065510 CACGGTTACAACAATTGGTGTCA 59.934 43.478 31.54 19.28 43.59 3.58
309 1606 3.549221 CCACGGTTACAACAATTGGTGTC 60.549 47.826 31.54 18.39 43.59 3.67
311 1608 2.860582 GCCACGGTTACAACAATTGGTG 60.861 50.000 21.95 21.95 39.04 4.17
312 1609 1.338655 GCCACGGTTACAACAATTGGT 59.661 47.619 10.83 0.00 34.12 3.67
313 1610 1.611491 AGCCACGGTTACAACAATTGG 59.389 47.619 10.83 0.00 34.12 3.16
314 1611 4.411327 CATAGCCACGGTTACAACAATTG 58.589 43.478 3.24 3.24 0.00 2.32
315 1612 3.119637 GCATAGCCACGGTTACAACAATT 60.120 43.478 0.00 0.00 0.00 2.32
316 1613 2.422127 GCATAGCCACGGTTACAACAAT 59.578 45.455 0.00 0.00 0.00 2.71
317 1614 1.807742 GCATAGCCACGGTTACAACAA 59.192 47.619 0.00 0.00 0.00 2.83
318 1615 1.444836 GCATAGCCACGGTTACAACA 58.555 50.000 0.00 0.00 0.00 3.33
332 1629 0.972883 GAGGTGGAGCTAGGGCATAG 59.027 60.000 0.96 0.96 41.70 2.23
333 1630 0.563173 AGAGGTGGAGCTAGGGCATA 59.437 55.000 0.00 0.00 41.70 3.14
334 1631 0.762461 GAGAGGTGGAGCTAGGGCAT 60.762 60.000 0.00 0.00 41.70 4.40
335 1632 1.381872 GAGAGGTGGAGCTAGGGCA 60.382 63.158 0.00 0.00 41.70 5.36
336 1633 1.075600 AGAGAGGTGGAGCTAGGGC 60.076 63.158 0.00 0.00 39.06 5.19
337 1634 0.555769 AGAGAGAGGTGGAGCTAGGG 59.444 60.000 0.00 0.00 0.00 3.53
338 1635 1.214175 TGAGAGAGAGGTGGAGCTAGG 59.786 57.143 0.00 0.00 0.00 3.02
339 1636 2.297701 GTGAGAGAGAGGTGGAGCTAG 58.702 57.143 0.00 0.00 0.00 3.42
340 1637 1.407575 CGTGAGAGAGAGGTGGAGCTA 60.408 57.143 0.00 0.00 0.00 3.32
341 1638 0.679640 CGTGAGAGAGAGGTGGAGCT 60.680 60.000 0.00 0.00 0.00 4.09
342 1639 1.806568 CGTGAGAGAGAGGTGGAGC 59.193 63.158 0.00 0.00 0.00 4.70
343 1640 0.679640 AGCGTGAGAGAGAGGTGGAG 60.680 60.000 0.00 0.00 0.00 3.86
344 1641 0.962855 CAGCGTGAGAGAGAGGTGGA 60.963 60.000 0.00 0.00 0.00 4.02
345 1642 1.510383 CAGCGTGAGAGAGAGGTGG 59.490 63.158 0.00 0.00 0.00 4.61
346 1643 1.153862 GCAGCGTGAGAGAGAGGTG 60.154 63.158 0.00 0.00 35.47 4.00
347 1644 1.604879 TGCAGCGTGAGAGAGAGGT 60.605 57.895 0.00 0.00 0.00 3.85
348 1645 1.153862 GTGCAGCGTGAGAGAGAGG 60.154 63.158 0.00 0.00 0.00 3.69
349 1646 1.153862 GGTGCAGCGTGAGAGAGAG 60.154 63.158 0.00 0.00 0.00 3.20
350 1647 1.181741 AAGGTGCAGCGTGAGAGAGA 61.182 55.000 10.78 0.00 0.00 3.10
351 1648 0.320247 AAAGGTGCAGCGTGAGAGAG 60.320 55.000 10.78 0.00 0.00 3.20
352 1649 0.319900 GAAAGGTGCAGCGTGAGAGA 60.320 55.000 10.78 0.00 0.00 3.10
353 1650 0.320247 AGAAAGGTGCAGCGTGAGAG 60.320 55.000 10.78 0.00 0.00 3.20
354 1651 0.319900 GAGAAAGGTGCAGCGTGAGA 60.320 55.000 10.78 0.00 0.00 3.27
355 1652 0.320247 AGAGAAAGGTGCAGCGTGAG 60.320 55.000 10.78 0.00 0.00 3.51
356 1653 0.319900 GAGAGAAAGGTGCAGCGTGA 60.320 55.000 10.78 0.00 0.00 4.35
357 1654 0.320247 AGAGAGAAAGGTGCAGCGTG 60.320 55.000 10.78 0.00 0.00 5.34
358 1655 0.394565 AAGAGAGAAAGGTGCAGCGT 59.605 50.000 10.78 3.92 0.00 5.07
359 1656 1.462670 GAAAGAGAGAAAGGTGCAGCG 59.537 52.381 10.78 0.00 0.00 5.18
360 1657 2.741517 GAGAAAGAGAGAAAGGTGCAGC 59.258 50.000 8.11 8.11 0.00 5.25
361 1658 3.333804 GGAGAAAGAGAGAAAGGTGCAG 58.666 50.000 0.00 0.00 0.00 4.41
362 1659 2.289072 CGGAGAAAGAGAGAAAGGTGCA 60.289 50.000 0.00 0.00 0.00 4.57
363 1660 2.028930 TCGGAGAAAGAGAGAAAGGTGC 60.029 50.000 0.00 0.00 0.00 5.01
364 1661 3.944055 TCGGAGAAAGAGAGAAAGGTG 57.056 47.619 0.00 0.00 0.00 4.00
365 1662 3.007074 GGTTCGGAGAAAGAGAGAAAGGT 59.993 47.826 0.00 0.00 45.90 3.50
366 1663 3.006967 TGGTTCGGAGAAAGAGAGAAAGG 59.993 47.826 0.00 0.00 45.90 3.11
367 1664 4.021894 TCTGGTTCGGAGAAAGAGAGAAAG 60.022 45.833 0.00 0.00 45.90 2.62
368 1665 3.895656 TCTGGTTCGGAGAAAGAGAGAAA 59.104 43.478 0.00 0.00 45.90 2.52
369 1666 3.497332 TCTGGTTCGGAGAAAGAGAGAA 58.503 45.455 0.00 0.00 45.90 2.87
370 1667 3.156288 TCTGGTTCGGAGAAAGAGAGA 57.844 47.619 0.00 0.00 45.90 3.10
371 1668 3.445450 TGATCTGGTTCGGAGAAAGAGAG 59.555 47.826 0.00 0.00 45.90 3.20
372 1669 3.431415 TGATCTGGTTCGGAGAAAGAGA 58.569 45.455 0.00 0.00 45.90 3.10
373 1670 3.876274 TGATCTGGTTCGGAGAAAGAG 57.124 47.619 0.00 0.00 45.90 2.85
374 1671 3.323691 TGTTGATCTGGTTCGGAGAAAGA 59.676 43.478 0.00 0.00 45.90 2.52
375 1672 3.664107 TGTTGATCTGGTTCGGAGAAAG 58.336 45.455 0.00 0.00 45.90 2.62
376 1673 3.323691 TCTGTTGATCTGGTTCGGAGAAA 59.676 43.478 0.00 0.00 45.90 2.52
377 1674 2.897326 TCTGTTGATCTGGTTCGGAGAA 59.103 45.455 0.00 0.00 45.90 2.87
378 1675 2.525368 TCTGTTGATCTGGTTCGGAGA 58.475 47.619 0.00 0.00 0.00 3.71
379 1676 3.056536 TCTTCTGTTGATCTGGTTCGGAG 60.057 47.826 0.00 0.00 0.00 4.63
380 1677 2.897326 TCTTCTGTTGATCTGGTTCGGA 59.103 45.455 0.00 0.00 0.00 4.55
381 1678 3.319137 TCTTCTGTTGATCTGGTTCGG 57.681 47.619 0.00 0.00 0.00 4.30
382 1679 3.681897 CCTTCTTCTGTTGATCTGGTTCG 59.318 47.826 0.00 0.00 0.00 3.95
383 1680 4.899502 TCCTTCTTCTGTTGATCTGGTTC 58.100 43.478 0.00 0.00 0.00 3.62
384 1681 4.263243 CCTCCTTCTTCTGTTGATCTGGTT 60.263 45.833 0.00 0.00 0.00 3.67
385 1682 3.262915 CCTCCTTCTTCTGTTGATCTGGT 59.737 47.826 0.00 0.00 0.00 4.00
386 1683 3.517100 TCCTCCTTCTTCTGTTGATCTGG 59.483 47.826 0.00 0.00 0.00 3.86
387 1684 4.815533 TCCTCCTTCTTCTGTTGATCTG 57.184 45.455 0.00 0.00 0.00 2.90
388 1685 4.224818 CCTTCCTCCTTCTTCTGTTGATCT 59.775 45.833 0.00 0.00 0.00 2.75
389 1686 4.223923 TCCTTCCTCCTTCTTCTGTTGATC 59.776 45.833 0.00 0.00 0.00 2.92
390 1687 4.171234 TCCTTCCTCCTTCTTCTGTTGAT 58.829 43.478 0.00 0.00 0.00 2.57
391 1688 3.587498 TCCTTCCTCCTTCTTCTGTTGA 58.413 45.455 0.00 0.00 0.00 3.18
392 1689 4.566426 ATCCTTCCTCCTTCTTCTGTTG 57.434 45.455 0.00 0.00 0.00 3.33
393 1690 5.190726 CCTTATCCTTCCTCCTTCTTCTGTT 59.809 44.000 0.00 0.00 0.00 3.16
394 1691 4.719273 CCTTATCCTTCCTCCTTCTTCTGT 59.281 45.833 0.00 0.00 0.00 3.41
395 1692 4.965532 TCCTTATCCTTCCTCCTTCTTCTG 59.034 45.833 0.00 0.00 0.00 3.02
396 1693 5.227917 TCCTTATCCTTCCTCCTTCTTCT 57.772 43.478 0.00 0.00 0.00 2.85
397 1694 5.663556 TCTTCCTTATCCTTCCTCCTTCTTC 59.336 44.000 0.00 0.00 0.00 2.87
398 1695 5.604752 TCTTCCTTATCCTTCCTCCTTCTT 58.395 41.667 0.00 0.00 0.00 2.52
399 1696 5.227917 TCTTCCTTATCCTTCCTCCTTCT 57.772 43.478 0.00 0.00 0.00 2.85
400 1697 5.189934 TGTTCTTCCTTATCCTTCCTCCTTC 59.810 44.000 0.00 0.00 0.00 3.46
401 1698 5.101529 TGTTCTTCCTTATCCTTCCTCCTT 58.898 41.667 0.00 0.00 0.00 3.36
402 1699 4.699994 TGTTCTTCCTTATCCTTCCTCCT 58.300 43.478 0.00 0.00 0.00 3.69
403 1700 5.432645 CTTGTTCTTCCTTATCCTTCCTCC 58.567 45.833 0.00 0.00 0.00 4.30
404 1701 5.189934 TCCTTGTTCTTCCTTATCCTTCCTC 59.810 44.000 0.00 0.00 0.00 3.71
405 1702 5.045505 GTCCTTGTTCTTCCTTATCCTTCCT 60.046 44.000 0.00 0.00 0.00 3.36
406 1703 5.186942 GTCCTTGTTCTTCCTTATCCTTCC 58.813 45.833 0.00 0.00 0.00 3.46
407 1704 5.644206 GTGTCCTTGTTCTTCCTTATCCTTC 59.356 44.000 0.00 0.00 0.00 3.46
408 1705 5.561679 GTGTCCTTGTTCTTCCTTATCCTT 58.438 41.667 0.00 0.00 0.00 3.36
409 1706 4.322801 CGTGTCCTTGTTCTTCCTTATCCT 60.323 45.833 0.00 0.00 0.00 3.24
410 1707 3.933332 CGTGTCCTTGTTCTTCCTTATCC 59.067 47.826 0.00 0.00 0.00 2.59
411 1708 4.817517 TCGTGTCCTTGTTCTTCCTTATC 58.182 43.478 0.00 0.00 0.00 1.75
412 1709 4.822026 CTCGTGTCCTTGTTCTTCCTTAT 58.178 43.478 0.00 0.00 0.00 1.73
413 1710 3.554337 GCTCGTGTCCTTGTTCTTCCTTA 60.554 47.826 0.00 0.00 0.00 2.69
414 1711 2.807108 GCTCGTGTCCTTGTTCTTCCTT 60.807 50.000 0.00 0.00 0.00 3.36
415 1712 1.270358 GCTCGTGTCCTTGTTCTTCCT 60.270 52.381 0.00 0.00 0.00 3.36
416 1713 1.149148 GCTCGTGTCCTTGTTCTTCC 58.851 55.000 0.00 0.00 0.00 3.46
417 1714 1.865865 TGCTCGTGTCCTTGTTCTTC 58.134 50.000 0.00 0.00 0.00 2.87
418 1715 2.213499 CTTGCTCGTGTCCTTGTTCTT 58.787 47.619 0.00 0.00 0.00 2.52
419 1716 1.139058 ACTTGCTCGTGTCCTTGTTCT 59.861 47.619 0.00 0.00 0.00 3.01
420 1717 1.583054 ACTTGCTCGTGTCCTTGTTC 58.417 50.000 0.00 0.00 0.00 3.18
421 1718 2.038387 AACTTGCTCGTGTCCTTGTT 57.962 45.000 0.00 0.00 0.00 2.83
422 1719 1.940613 GAAACTTGCTCGTGTCCTTGT 59.059 47.619 0.00 0.00 0.00 3.16
423 1720 2.213499 AGAAACTTGCTCGTGTCCTTG 58.787 47.619 0.00 0.00 0.00 3.61
424 1721 2.622064 AGAAACTTGCTCGTGTCCTT 57.378 45.000 0.00 0.00 0.00 3.36
425 1722 2.622064 AAGAAACTTGCTCGTGTCCT 57.378 45.000 0.00 0.00 0.00 3.85
426 1723 2.031944 GGAAAGAAACTTGCTCGTGTCC 60.032 50.000 0.00 0.00 0.00 4.02
427 1724 2.612212 TGGAAAGAAACTTGCTCGTGTC 59.388 45.455 0.00 0.00 0.00 3.67
428 1725 2.614057 CTGGAAAGAAACTTGCTCGTGT 59.386 45.455 0.00 0.00 0.00 4.49
429 1726 2.031682 CCTGGAAAGAAACTTGCTCGTG 60.032 50.000 0.00 0.00 0.00 4.35
430 1727 2.222027 CCTGGAAAGAAACTTGCTCGT 58.778 47.619 0.00 0.00 0.00 4.18
431 1728 2.031682 CACCTGGAAAGAAACTTGCTCG 60.032 50.000 0.00 0.00 0.00 5.03
432 1729 2.287849 GCACCTGGAAAGAAACTTGCTC 60.288 50.000 0.00 0.00 0.00 4.26
433 1730 1.683385 GCACCTGGAAAGAAACTTGCT 59.317 47.619 0.00 0.00 0.00 3.91
434 1731 1.408702 TGCACCTGGAAAGAAACTTGC 59.591 47.619 0.00 0.00 0.00 4.01
435 1732 2.541588 CGTGCACCTGGAAAGAAACTTG 60.542 50.000 12.15 0.00 0.00 3.16
436 1733 1.676006 CGTGCACCTGGAAAGAAACTT 59.324 47.619 12.15 0.00 0.00 2.66
437 1734 1.134220 TCGTGCACCTGGAAAGAAACT 60.134 47.619 12.15 0.00 0.00 2.66
438 1735 1.305201 TCGTGCACCTGGAAAGAAAC 58.695 50.000 12.15 0.00 0.00 2.78
439 1736 1.673920 GTTCGTGCACCTGGAAAGAAA 59.326 47.619 12.15 0.00 0.00 2.52
440 1737 1.305201 GTTCGTGCACCTGGAAAGAA 58.695 50.000 12.15 4.06 0.00 2.52
441 1738 0.179234 TGTTCGTGCACCTGGAAAGA 59.821 50.000 12.15 0.00 0.00 2.52
442 1739 0.307760 GTGTTCGTGCACCTGGAAAG 59.692 55.000 12.15 0.00 33.53 2.62
443 1740 2.399856 GTGTTCGTGCACCTGGAAA 58.600 52.632 12.15 0.00 33.53 3.13
444 1741 4.134623 GTGTTCGTGCACCTGGAA 57.865 55.556 12.15 6.41 33.53 3.53
465 1762 2.912771 TGAGTTCGTGCTCAGGAAAAA 58.087 42.857 6.58 0.00 40.23 1.94
466 1763 2.613026 TGAGTTCGTGCTCAGGAAAA 57.387 45.000 6.58 0.00 40.23 2.29
495 1792 1.674441 CTAGTCCTCCGTGTATCGCAA 59.326 52.381 0.00 0.00 38.35 4.85
496 1793 1.306148 CTAGTCCTCCGTGTATCGCA 58.694 55.000 0.00 0.00 38.35 5.10
499 1796 1.590932 TCGCTAGTCCTCCGTGTATC 58.409 55.000 0.00 0.00 0.00 2.24
505 1802 3.744987 CGTATAAATCGCTAGTCCTCCG 58.255 50.000 0.00 0.00 0.00 4.63
516 1813 0.160813 ATGTGCGCGCGTATAAATCG 59.839 50.000 32.35 1.08 0.00 3.34
517 1814 2.743172 GTATGTGCGCGCGTATAAATC 58.257 47.619 32.35 15.10 0.00 2.17
518 1815 1.123576 CGTATGTGCGCGCGTATAAAT 59.876 47.619 32.35 22.31 0.00 1.40
519 1816 0.499343 CGTATGTGCGCGCGTATAAA 59.501 50.000 32.35 17.00 0.00 1.40
677 1979 1.959226 CGTGCGTAGGTTTGCTGGT 60.959 57.895 0.00 0.00 0.00 4.00
702 2004 1.613317 TATGTGTGGCCGAGGGAGTG 61.613 60.000 0.00 0.00 0.00 3.51
705 2007 0.980754 ATGTATGTGTGGCCGAGGGA 60.981 55.000 0.00 0.00 0.00 4.20
707 2009 1.439353 GCATGTATGTGTGGCCGAGG 61.439 60.000 0.00 0.00 0.00 4.63
708 2010 0.744057 TGCATGTATGTGTGGCCGAG 60.744 55.000 0.00 0.00 0.00 4.63
709 2011 1.024046 GTGCATGTATGTGTGGCCGA 61.024 55.000 0.00 0.00 0.00 5.54
711 2013 1.666209 GGGTGCATGTATGTGTGGCC 61.666 60.000 0.00 0.00 0.00 5.36
713 2015 0.392327 TCGGGTGCATGTATGTGTGG 60.392 55.000 0.00 0.00 0.00 4.17
720 2022 2.584064 CAGGCTCGGGTGCATGTA 59.416 61.111 0.00 0.00 39.52 2.29
771 2076 4.961511 TCTTGAAGGCGTGCGCGT 62.962 61.111 22.18 8.25 43.06 6.01
773 2078 4.090057 GGTCTTGAAGGCGTGCGC 62.090 66.667 8.17 8.17 41.06 6.09
775 2080 4.090057 GCGGTCTTGAAGGCGTGC 62.090 66.667 0.00 0.00 0.00 5.34
791 2096 2.032680 TGTTAGGAATAAGCCGTGGC 57.967 50.000 1.67 1.67 42.33 5.01
792 2097 4.733523 GCAAATGTTAGGAATAAGCCGTGG 60.734 45.833 0.00 0.00 0.00 4.94
794 2099 4.096382 CAGCAAATGTTAGGAATAAGCCGT 59.904 41.667 0.00 0.00 0.00 5.68
805 2131 0.179156 CCGCCAGCAGCAAATGTTAG 60.179 55.000 0.00 0.00 44.04 2.34
807 2133 2.652530 CCGCCAGCAGCAAATGTT 59.347 55.556 0.00 0.00 44.04 2.71
808 2134 3.376078 CCCGCCAGCAGCAAATGT 61.376 61.111 0.00 0.00 44.04 2.71
809 2135 3.376078 ACCCGCCAGCAGCAAATG 61.376 61.111 0.00 0.00 44.04 2.32
811 2137 3.866379 ATCACCCGCCAGCAGCAAA 62.866 57.895 0.00 0.00 44.04 3.68
812 2138 4.349503 ATCACCCGCCAGCAGCAA 62.350 61.111 0.00 0.00 44.04 3.91
816 2142 4.408821 GTGGATCACCCGCCAGCA 62.409 66.667 0.00 0.00 39.55 4.41
863 2189 9.319143 GTGTCTATGTATCAGCTGACTTATTTT 57.681 33.333 20.97 3.44 0.00 1.82
867 2193 7.057264 AGAGTGTCTATGTATCAGCTGACTTA 58.943 38.462 20.97 5.65 0.00 2.24
871 2197 7.881775 TTTAGAGTGTCTATGTATCAGCTGA 57.118 36.000 20.79 20.79 0.00 4.26
872 2198 8.194104 AGTTTTAGAGTGTCTATGTATCAGCTG 58.806 37.037 7.63 7.63 0.00 4.24
873 2199 8.299990 AGTTTTAGAGTGTCTATGTATCAGCT 57.700 34.615 0.00 0.00 0.00 4.24
923 2249 8.403236 ACTAACCAACTGACAACAAAATAGTTC 58.597 33.333 0.00 0.00 29.78 3.01
936 2262 8.759782 AGCCCATATATATACTAACCAACTGAC 58.240 37.037 0.00 0.00 0.00 3.51
943 2269 6.099845 ACAGCCAGCCCATATATATACTAACC 59.900 42.308 0.00 0.00 0.00 2.85
1073 2402 0.685097 GCTGGTGGTGTAGAGAACCA 59.315 55.000 0.00 0.00 45.49 3.67
1078 2407 2.165437 GAGAGAAGCTGGTGGTGTAGAG 59.835 54.545 0.00 0.00 0.00 2.43
1135 2464 0.671796 ATGGTGAACACGTCGTCTGA 59.328 50.000 0.00 0.00 0.00 3.27
1284 2885 2.809601 GACAACGACGCGGATGCT 60.810 61.111 12.47 0.00 39.65 3.79
1740 3703 2.847234 ACGAAGCCCAGGTCCACA 60.847 61.111 0.00 0.00 0.00 4.17
1876 3861 9.945904 AGGAGAAAGTAAGTTCGAAAATATTCT 57.054 29.630 0.00 5.71 33.17 2.40
1902 3894 5.063180 TCGAGCTACAAGAAATTACGGAA 57.937 39.130 0.00 0.00 0.00 4.30
1951 3947 5.357257 ACTTGTCGCTCAAACGGATATATT 58.643 37.500 0.00 0.00 35.48 1.28
1982 3978 1.528161 GCACGTACGTAAGCCTTTGTT 59.472 47.619 22.34 0.00 45.62 2.83
1994 3990 7.966753 AGGAATAATAGTATACATGCACGTACG 59.033 37.037 15.01 15.01 0.00 3.67
1997 3993 7.813148 GTGAGGAATAATAGTATACATGCACGT 59.187 37.037 5.50 0.00 0.00 4.49
1998 3994 7.812669 TGTGAGGAATAATAGTATACATGCACG 59.187 37.037 5.50 0.00 0.00 5.34
1999 3995 9.144747 CTGTGAGGAATAATAGTATACATGCAC 57.855 37.037 5.50 0.00 0.00 4.57
2000 3996 9.088987 TCTGTGAGGAATAATAGTATACATGCA 57.911 33.333 5.50 0.00 0.00 3.96
2001 3997 9.929180 TTCTGTGAGGAATAATAGTATACATGC 57.071 33.333 5.50 0.00 0.00 4.06
2014 4010 7.602644 GCCGTATTTATCATTCTGTGAGGAATA 59.397 37.037 0.00 0.00 40.92 1.75
2024 4021 5.070446 TCAGACAGGCCGTATTTATCATTCT 59.930 40.000 0.00 0.00 0.00 2.40
2036 4033 1.069765 CAGTTGTCAGACAGGCCGT 59.930 57.895 2.82 0.00 0.00 5.68
2417 5030 2.732597 GCTTCTCTGTATCGAGCACGTT 60.733 50.000 2.86 0.00 40.69 3.99
2428 5041 2.502142 TGTACCGGAGCTTCTCTGTA 57.498 50.000 9.46 0.00 35.27 2.74
2477 5090 3.463728 TTGTAGGTGGGCGTGCGTT 62.464 57.895 0.00 0.00 0.00 4.84
2515 5128 0.519077 CGGACTTGAGCAAGGCTTTC 59.481 55.000 15.13 0.00 45.68 2.62
2542 5161 4.104102 ACAACTTTGTGAAGGGATAGTGGA 59.896 41.667 0.00 0.00 40.49 4.02
2616 5238 2.508663 GTACTTCCTCACGCGCCC 60.509 66.667 5.73 0.00 0.00 6.13
2620 5242 0.601558 TCACCAGTACTTCCTCACGC 59.398 55.000 0.00 0.00 0.00 5.34
2729 5351 3.842923 GCTCCCTGCTAGCTCGCA 61.843 66.667 17.23 12.87 37.01 5.10
2762 5384 1.138069 TGTGCCATCGATACGTGGATT 59.862 47.619 6.97 0.00 37.72 3.01
2796 5418 3.438087 CACCCTCATGCTTGTTTCTACAG 59.562 47.826 0.00 0.00 35.28 2.74
2835 5457 2.579873 CATCGGCATCCAAATCTTCCT 58.420 47.619 0.00 0.00 0.00 3.36
2938 5560 7.557358 TGCAATTTGATGGTACTGTAATCTCAT 59.443 33.333 0.00 0.00 0.00 2.90
3006 5628 3.073678 TGGGTCACAACTTGATGATTCG 58.926 45.455 0.00 0.00 36.32 3.34
3039 5675 4.499696 GGCACATTGGGTATTTCATACAGC 60.500 45.833 0.00 0.00 37.48 4.40
3086 5725 2.587612 CAATGCTGCAACACATTTGC 57.412 45.000 6.36 1.95 45.11 3.68
3098 5737 1.280066 GCCCAAATTACGCAATGCTG 58.720 50.000 2.94 0.00 0.00 4.41
3204 5846 2.696989 TGAGTGGCATGGATGTACTG 57.303 50.000 0.00 0.00 31.08 2.74
3292 5936 9.938280 GGGTATGTACAAGATATATTGCACTTA 57.062 33.333 13.22 9.15 33.28 2.24
3473 6119 0.552363 TGCTACCACCATGCATCCAT 59.448 50.000 0.00 0.00 0.00 3.41
3506 6152 6.372937 TGTTGATTTATTGAGTGCGTATGGAA 59.627 34.615 0.00 0.00 0.00 3.53
3520 6166 9.723601 AAAATTAGGTGTGCATGTTGATTTATT 57.276 25.926 0.00 0.00 0.00 1.40
3522 6168 8.147058 ACAAAATTAGGTGTGCATGTTGATTTA 58.853 29.630 0.00 0.00 0.00 1.40
3652 6298 5.599656 AGTGTTGGTTAGCCCTATAATCGTA 59.400 40.000 0.00 0.00 0.00 3.43
3658 6304 5.765576 TGAAAGTGTTGGTTAGCCCTATA 57.234 39.130 0.00 0.00 0.00 1.31
3874 6525 9.677567 GCGTGAATATAAATACAAATTCCACAT 57.322 29.630 0.00 0.00 0.00 3.21
3875 6526 8.898761 AGCGTGAATATAAATACAAATTCCACA 58.101 29.630 0.00 0.00 0.00 4.17
3876 6527 9.382244 GAGCGTGAATATAAATACAAATTCCAC 57.618 33.333 0.00 0.00 0.00 4.02
3877 6528 8.279800 CGAGCGTGAATATAAATACAAATTCCA 58.720 33.333 0.00 0.00 0.00 3.53
3878 6529 7.268447 GCGAGCGTGAATATAAATACAAATTCC 59.732 37.037 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.