Multiple sequence alignment - TraesCS3B01G568500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G568500 chr3B 100.000 5100 0 0 1 5100 800136899 800141998 0.000000e+00 9419.0
1 TraesCS3B01G568500 chr3B 90.805 87 7 1 465 550 507385937 507385851 1.160000e-21 115.0
2 TraesCS3B01G568500 chr4D 91.107 2890 155 33 859 3680 506463504 506466359 0.000000e+00 3819.0
3 TraesCS3B01G568500 chr4D 92.754 552 38 2 1 550 506418288 506418839 0.000000e+00 797.0
4 TraesCS3B01G568500 chr4D 91.489 376 27 4 3760 4132 506466344 506466717 3.520000e-141 512.0
5 TraesCS3B01G568500 chr4D 93.529 170 10 1 603 771 506420236 506420405 8.480000e-63 252.0
6 TraesCS3B01G568500 chr4D 83.010 206 23 7 2167 2372 291767368 291767561 5.250000e-40 176.0
7 TraesCS3B01G568500 chr4D 80.488 164 8 9 4274 4437 506466728 506466867 2.510000e-18 104.0
8 TraesCS3B01G568500 chr4D 96.491 57 2 0 550 606 506420099 506420155 1.510000e-15 95.3
9 TraesCS3B01G568500 chr4B 90.415 1544 100 25 2160 3680 663863693 663865211 0.000000e+00 1988.0
10 TraesCS3B01G568500 chr4B 90.415 1544 100 25 2160 3680 663871727 663873245 0.000000e+00 1988.0
11 TraesCS3B01G568500 chr4B 90.415 1544 100 25 2160 3680 663875943 663877461 0.000000e+00 1988.0
12 TraesCS3B01G568500 chr4B 90.356 1545 100 26 2160 3680 663857834 663859353 0.000000e+00 1982.0
13 TraesCS3B01G568500 chr4B 90.714 1303 79 23 2160 3437 663869064 663870349 0.000000e+00 1698.0
14 TraesCS3B01G568500 chr4B 87.534 1099 75 17 976 2039 663862594 663863665 0.000000e+00 1214.0
15 TraesCS3B01G568500 chr4B 87.352 1099 77 17 976 2039 663870628 663871699 0.000000e+00 1203.0
16 TraesCS3B01G568500 chr4B 87.261 1099 78 17 976 2039 663856735 663857806 0.000000e+00 1197.0
17 TraesCS3B01G568500 chr4B 87.261 1099 78 18 976 2039 663874844 663875915 0.000000e+00 1197.0
18 TraesCS3B01G568500 chr4B 85.948 854 62 18 4282 5100 663859741 663860571 0.000000e+00 859.0
19 TraesCS3B01G568500 chr4B 85.948 854 62 18 4282 5100 663865599 663866429 0.000000e+00 859.0
20 TraesCS3B01G568500 chr4B 86.486 814 65 12 1244 2039 663868250 663869036 0.000000e+00 852.0
21 TraesCS3B01G568500 chr4B 85.597 854 65 27 4282 5100 663877849 663878679 0.000000e+00 843.0
22 TraesCS3B01G568500 chr4B 89.630 405 31 8 3760 4155 663877446 663877848 5.890000e-139 505.0
23 TraesCS3B01G568500 chr4B 89.136 405 33 8 3760 4155 663859338 663859740 1.280000e-135 494.0
24 TraesCS3B01G568500 chr4B 89.136 405 33 8 3760 4155 663865196 663865598 1.280000e-135 494.0
25 TraesCS3B01G568500 chr4B 90.805 348 15 4 976 1306 663867802 663868149 2.800000e-122 449.0
26 TraesCS3B01G568500 chr4B 93.889 180 7 3 4414 4593 662613697 662613522 8.420000e-68 268.0
27 TraesCS3B01G568500 chr4B 84.865 185 17 8 3760 3935 663873230 663873412 5.250000e-40 176.0
28 TraesCS3B01G568500 chr5A 91.612 1228 74 13 2458 3680 702751583 702752786 0.000000e+00 1670.0
29 TraesCS3B01G568500 chr5A 90.146 1167 65 14 859 1989 702749684 702750836 0.000000e+00 1472.0
30 TraesCS3B01G568500 chr5A 91.294 402 33 1 2031 2432 702751187 702751586 9.650000e-152 547.0
31 TraesCS3B01G568500 chr5A 88.834 403 33 8 3760 4155 702752771 702753168 7.680000e-133 484.0
32 TraesCS3B01G568500 chr5A 96.154 130 2 1 4154 4280 492896671 492896800 5.170000e-50 209.0
33 TraesCS3B01G568500 chr2A 86.000 700 54 21 2209 2883 722819756 722819076 0.000000e+00 710.0
34 TraesCS3B01G568500 chr2A 79.795 782 94 33 1371 2124 722826057 722825312 1.270000e-140 510.0
35 TraesCS3B01G568500 chr2A 85.772 492 43 9 3153 3635 722818906 722818433 3.550000e-136 496.0
36 TraesCS3B01G568500 chr2A 91.608 143 8 2 4145 4284 157931586 157931445 1.450000e-45 195.0
37 TraesCS3B01G568500 chr2B 87.227 642 51 16 2255 2885 711533308 711532687 0.000000e+00 702.0
38 TraesCS3B01G568500 chr2B 87.097 496 38 14 3153 3635 711532524 711532042 5.810000e-149 538.0
39 TraesCS3B01G568500 chr2B 80.260 385 62 11 173 550 291584852 291585229 1.400000e-70 278.0
40 TraesCS3B01G568500 chr2B 77.886 511 68 20 1176 1662 711533868 711533379 5.030000e-70 276.0
41 TraesCS3B01G568500 chr2B 81.283 187 32 3 173 357 339204723 339204538 1.140000e-31 148.0
42 TraesCS3B01G568500 chrUn 84.168 619 51 18 4282 4869 403636379 403635777 1.600000e-154 556.0
43 TraesCS3B01G568500 chrUn 90.736 421 30 4 3263 3683 403637175 403636764 2.080000e-153 553.0
44 TraesCS3B01G568500 chrUn 89.136 405 33 8 3760 4155 403636782 403636380 1.280000e-135 494.0
45 TraesCS3B01G568500 chr2D 82.732 637 66 21 3021 3635 588227770 588227156 1.260000e-145 527.0
46 TraesCS3B01G568500 chr2D 86.283 226 27 3 4669 4893 24221304 24221082 5.100000e-60 243.0
47 TraesCS3B01G568500 chr2D 93.750 144 5 2 4146 4285 62293431 62293288 4.000000e-51 213.0
48 TraesCS3B01G568500 chr2D 93.431 137 5 2 4152 4285 326403640 326403505 3.110000e-47 200.0
49 TraesCS3B01G568500 chr5D 88.596 228 20 4 4669 4894 346885367 346885590 6.510000e-69 272.0
50 TraesCS3B01G568500 chr5D 92.414 145 6 3 4154 4295 154533450 154533592 8.660000e-48 202.0
51 TraesCS3B01G568500 chr6A 89.041 219 21 3 4678 4896 142780581 142780796 8.420000e-68 268.0
52 TraesCS3B01G568500 chr1D 87.727 220 25 2 4672 4890 298501195 298500977 6.550000e-64 255.0
53 TraesCS3B01G568500 chr1D 97.297 37 1 0 514 550 395411147 395411183 4.260000e-06 63.9
54 TraesCS3B01G568500 chr3D 86.344 227 29 2 4669 4894 609016723 609016948 3.940000e-61 246.0
55 TraesCS3B01G568500 chr5B 87.379 206 22 4 4692 4897 122095624 122095423 3.070000e-57 233.0
56 TraesCS3B01G568500 chr7B 92.000 150 5 4 4151 4293 470313024 470313173 2.410000e-48 204.0
57 TraesCS3B01G568500 chr6B 95.385 130 3 1 4151 4277 487319280 487319151 2.410000e-48 204.0
58 TraesCS3B01G568500 chr1B 92.593 135 7 1 4150 4281 30648992 30648858 1.870000e-44 191.0
59 TraesCS3B01G568500 chr1B 92.593 135 7 1 4150 4281 30660406 30660272 1.870000e-44 191.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G568500 chr3B 800136899 800141998 5099 False 9419.000000 9419 100.000000 1 5100 1 chr3B.!!$F1 5099
1 TraesCS3B01G568500 chr4D 506463504 506466867 3363 False 1478.333333 3819 87.694667 859 4437 3 chr4D.!!$F3 3578
2 TraesCS3B01G568500 chr4D 506418288 506420405 2117 False 381.433333 797 94.258000 1 771 3 chr4D.!!$F2 770
3 TraesCS3B01G568500 chr4B 663856735 663878679 21944 False 1110.333333 1988 88.293000 976 5100 18 chr4B.!!$F1 4124
4 TraesCS3B01G568500 chr5A 702749684 702753168 3484 False 1043.250000 1670 90.471500 859 4155 4 chr5A.!!$F2 3296
5 TraesCS3B01G568500 chr2A 722818433 722819756 1323 True 603.000000 710 85.886000 2209 3635 2 chr2A.!!$R3 1426
6 TraesCS3B01G568500 chr2A 722825312 722826057 745 True 510.000000 510 79.795000 1371 2124 1 chr2A.!!$R2 753
7 TraesCS3B01G568500 chr2B 711532042 711533868 1826 True 505.333333 702 84.070000 1176 3635 3 chr2B.!!$R2 2459
8 TraesCS3B01G568500 chrUn 403635777 403637175 1398 True 534.333333 556 88.013333 3263 4869 3 chrUn.!!$R1 1606
9 TraesCS3B01G568500 chr2D 588227156 588227770 614 True 527.000000 527 82.732000 3021 3635 1 chr2D.!!$R4 614

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
512 515 0.034186 TGATAACCTGCAAGCCCTGG 60.034 55.0 0.00 0.0 0.00 4.45 F
1573 6502 0.035630 CTCAAGAGGGAGGGCACTTG 60.036 60.0 0.00 0.0 40.37 3.16 F
2318 15658 0.034574 TGGGGATCCACAAACCATCG 60.035 55.0 16.35 0.0 38.32 3.84 F
3589 21239 0.391130 TCTACCGTTCCATGCTGCAC 60.391 55.0 3.57 0.0 0.00 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1858 12167 0.105709 AAACCCACTGTCCAAAGGGG 60.106 55.000 5.28 0.0 45.83 4.79 R
2532 15874 1.408822 GCAACCATAGACCTGAAGGGG 60.409 57.143 0.56 0.0 40.27 4.79 R
3864 21523 0.674581 CGAAGCTCTGCCACCATCAA 60.675 55.000 0.00 0.0 0.00 2.57 R
4518 22178 0.531532 GCTCGTATGCATCTGCCACT 60.532 55.000 0.19 0.0 41.18 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 8.573885 CATCACATAACTGATAGCCATTGAAAT 58.426 33.333 0.00 0.00 29.28 2.17
125 126 4.587584 TTGTGAAAATCAAGCTGCATGA 57.412 36.364 10.21 10.21 0.00 3.07
305 306 9.899661 AATACTACAGTATTTGCTAAACCATCA 57.100 29.630 8.50 0.00 45.90 3.07
369 372 1.207593 CAGAGCCGCCGTTCTTTTG 59.792 57.895 0.00 0.00 0.00 2.44
401 404 0.321996 GATTATCCTCTCCCCCGTGC 59.678 60.000 0.00 0.00 0.00 5.34
448 451 2.347731 CAAGGAAACTCGCCTTACTCC 58.652 52.381 0.00 0.00 43.68 3.85
454 457 3.718210 CTCGCCTTACTCCCACGCC 62.718 68.421 0.00 0.00 0.00 5.68
507 510 3.347216 TCCTTCTTGATAACCTGCAAGC 58.653 45.455 0.00 0.00 40.89 4.01
509 512 2.128771 TCTTGATAACCTGCAAGCCC 57.871 50.000 0.00 0.00 40.89 5.19
512 515 0.034186 TGATAACCTGCAAGCCCTGG 60.034 55.000 0.00 0.00 0.00 4.45
622 1969 9.906660 AAACATGTACATTTCACAATAATCGTT 57.093 25.926 5.37 0.00 0.00 3.85
641 1988 5.293560 TCGTTGTCATCAGTACATGAAACA 58.706 37.500 0.00 3.37 42.53 2.83
748 2096 8.325787 ACCATCCTACATTTATTGTGTTGACTA 58.674 33.333 0.00 0.00 39.48 2.59
760 2108 3.517901 TGTGTTGACTATAGTTCCCCCAG 59.482 47.826 6.88 0.00 0.00 4.45
772 2120 3.076032 AGTTCCCCCAGCTAACTTGATTT 59.924 43.478 0.00 0.00 29.25 2.17
773 2121 3.825908 TCCCCCAGCTAACTTGATTTT 57.174 42.857 0.00 0.00 0.00 1.82
774 2122 4.938575 TCCCCCAGCTAACTTGATTTTA 57.061 40.909 0.00 0.00 0.00 1.52
775 2123 5.466127 TCCCCCAGCTAACTTGATTTTAT 57.534 39.130 0.00 0.00 0.00 1.40
777 2125 6.260663 TCCCCCAGCTAACTTGATTTTATTT 58.739 36.000 0.00 0.00 0.00 1.40
778 2126 6.728632 TCCCCCAGCTAACTTGATTTTATTTT 59.271 34.615 0.00 0.00 0.00 1.82
799 2147 4.447138 TTTTTGAGAACTCCCCAGCTAA 57.553 40.909 0.00 0.00 0.00 3.09
800 2148 3.418684 TTTGAGAACTCCCCAGCTAAC 57.581 47.619 0.00 0.00 0.00 2.34
801 2149 2.327325 TGAGAACTCCCCAGCTAACT 57.673 50.000 0.00 0.00 0.00 2.24
806 2154 3.054802 AGAACTCCCCAGCTAACTTGATG 60.055 47.826 0.00 0.00 0.00 3.07
807 2155 1.561542 ACTCCCCAGCTAACTTGATGG 59.438 52.381 0.00 0.00 42.62 3.51
808 2156 1.561542 CTCCCCAGCTAACTTGATGGT 59.438 52.381 0.00 0.00 41.52 3.55
810 2158 2.504175 TCCCCAGCTAACTTGATGGTAC 59.496 50.000 0.00 0.00 41.52 3.34
812 2160 3.535561 CCCAGCTAACTTGATGGTACTG 58.464 50.000 0.00 0.00 41.52 2.74
814 2162 4.565652 CCCAGCTAACTTGATGGTACTGTT 60.566 45.833 0.00 0.00 41.52 3.16
815 2163 5.003804 CCAGCTAACTTGATGGTACTGTTT 58.996 41.667 0.00 0.00 38.57 2.83
816 2164 5.106555 CCAGCTAACTTGATGGTACTGTTTG 60.107 44.000 0.00 0.00 38.57 2.93
817 2165 4.455877 AGCTAACTTGATGGTACTGTTTGC 59.544 41.667 0.00 0.00 38.76 3.68
818 2166 4.215399 GCTAACTTGATGGTACTGTTTGCA 59.785 41.667 0.00 0.00 38.50 4.08
820 2168 5.789643 AACTTGATGGTACTGTTTGCATT 57.210 34.783 0.00 0.00 0.00 3.56
822 2170 6.160576 ACTTGATGGTACTGTTTGCATTTT 57.839 33.333 0.00 0.00 0.00 1.82
826 2174 4.582701 TGGTACTGTTTGCATTTTCTGG 57.417 40.909 0.00 0.00 0.00 3.86
828 2176 4.404073 TGGTACTGTTTGCATTTTCTGGTT 59.596 37.500 0.00 0.00 0.00 3.67
831 2179 5.280654 ACTGTTTGCATTTTCTGGTTCAT 57.719 34.783 0.00 0.00 0.00 2.57
832 2180 6.403866 ACTGTTTGCATTTTCTGGTTCATA 57.596 33.333 0.00 0.00 0.00 2.15
835 2183 5.689514 TGTTTGCATTTTCTGGTTCATAACG 59.310 36.000 0.00 0.00 0.00 3.18
836 2184 5.446143 TTGCATTTTCTGGTTCATAACGT 57.554 34.783 0.00 0.00 0.00 3.99
837 2185 4.793071 TGCATTTTCTGGTTCATAACGTG 58.207 39.130 0.00 0.00 0.00 4.49
838 2186 4.517075 TGCATTTTCTGGTTCATAACGTGA 59.483 37.500 0.00 0.00 34.25 4.35
839 2187 5.009110 TGCATTTTCTGGTTCATAACGTGAA 59.991 36.000 0.00 0.00 44.36 3.18
840 2188 5.569059 GCATTTTCTGGTTCATAACGTGAAG 59.431 40.000 0.00 0.00 46.99 3.02
841 2189 6.567701 GCATTTTCTGGTTCATAACGTGAAGA 60.568 38.462 0.00 0.00 46.99 2.87
842 2190 5.917541 TTTCTGGTTCATAACGTGAAGAC 57.082 39.130 0.00 0.00 46.99 3.01
843 2191 3.921677 TCTGGTTCATAACGTGAAGACC 58.078 45.455 0.00 0.00 46.99 3.85
844 2192 2.666508 CTGGTTCATAACGTGAAGACCG 59.333 50.000 0.00 0.00 46.99 4.79
845 2193 2.036217 TGGTTCATAACGTGAAGACCGT 59.964 45.455 0.00 0.00 46.99 4.83
846 2194 3.062042 GGTTCATAACGTGAAGACCGTT 58.938 45.455 3.59 3.59 46.99 4.44
847 2195 3.495753 GGTTCATAACGTGAAGACCGTTT 59.504 43.478 3.40 0.00 46.99 3.60
848 2196 4.024641 GGTTCATAACGTGAAGACCGTTTT 60.025 41.667 3.40 0.00 46.99 2.43
849 2197 4.977741 TCATAACGTGAAGACCGTTTTC 57.022 40.909 3.40 0.00 45.46 2.29
850 2198 3.742369 TCATAACGTGAAGACCGTTTTCC 59.258 43.478 3.40 0.00 45.46 3.13
851 2199 2.027003 AACGTGAAGACCGTTTTCCA 57.973 45.000 0.00 0.00 45.46 3.53
852 2200 1.578583 ACGTGAAGACCGTTTTCCAG 58.421 50.000 0.00 0.00 34.28 3.86
854 2202 0.591659 GTGAAGACCGTTTTCCAGGC 59.408 55.000 0.00 0.00 0.00 4.85
855 2203 0.536460 TGAAGACCGTTTTCCAGGCC 60.536 55.000 0.00 0.00 0.00 5.19
856 2204 1.228459 AAGACCGTTTTCCAGGCCC 60.228 57.895 0.00 0.00 0.00 5.80
967 2321 0.799917 CTCACTCAGTCGCATCACCG 60.800 60.000 0.00 0.00 0.00 4.94
968 2322 1.212751 CACTCAGTCGCATCACCGA 59.787 57.895 0.00 0.00 34.40 4.69
969 2323 0.799917 CACTCAGTCGCATCACCGAG 60.800 60.000 0.00 0.00 37.99 4.63
972 2326 1.875813 CAGTCGCATCACCGAGCTC 60.876 63.158 2.73 2.73 37.99 4.09
973 2327 2.951745 GTCGCATCACCGAGCTCG 60.952 66.667 29.06 29.06 37.99 5.03
1339 6253 4.271687 GCAATTTCTAATCTGTTACGCGG 58.728 43.478 12.47 0.00 0.00 6.46
1349 6263 3.527533 TCTGTTACGCGGATTTTAGCAT 58.472 40.909 12.47 0.00 0.00 3.79
1369 6284 1.347062 AAATGTTCATGGCCGGGTTT 58.653 45.000 2.18 0.00 0.00 3.27
1403 6327 7.360269 CCAAAATTTCATGAAATGTGTAGTGCC 60.360 37.037 29.52 0.00 46.80 5.01
1406 6332 2.749076 TCATGAAATGTGTAGTGCCTGC 59.251 45.455 0.00 0.00 46.80 4.85
1490 6418 1.489560 GGGGGAGTACTGCAGGTGTT 61.490 60.000 19.93 0.00 0.00 3.32
1499 6427 0.825010 CTGCAGGTGTTGGGAGCTTT 60.825 55.000 5.57 0.00 0.00 3.51
1508 6436 2.155279 GTTGGGAGCTTTGGAAGACTC 58.845 52.381 0.00 0.00 33.65 3.36
1573 6502 0.035630 CTCAAGAGGGAGGGCACTTG 60.036 60.000 0.00 0.00 40.37 3.16
1608 6537 0.872021 CGCACGGCCTAGTGAATCTC 60.872 60.000 14.29 0.00 44.43 2.75
1858 12167 0.531753 GAGGATCGGAAGCAGAAGGC 60.532 60.000 0.00 0.00 45.30 4.35
1979 14951 6.721318 ACCATCACATATTCAGGTAAACACT 58.279 36.000 0.00 0.00 0.00 3.55
2005 14982 5.767816 TTCTTTTCTCTTGGTTTACTGCC 57.232 39.130 0.00 0.00 0.00 4.85
2007 14984 3.876309 TTTCTCTTGGTTTACTGCCCT 57.124 42.857 0.00 0.00 0.00 5.19
2066 15061 3.090037 TCACCAGTAGAAGGCTCAGTAC 58.910 50.000 0.00 0.00 0.00 2.73
2126 15466 4.202212 ACACCTATGCACGCATGAGTTATA 60.202 41.667 14.70 1.60 37.82 0.98
2133 15473 4.929211 TGCACGCATGAGTTATATCCATAC 59.071 41.667 0.00 0.00 0.00 2.39
2165 15505 1.814248 GCTTTCCTGAACTGTCCCGTT 60.814 52.381 0.00 0.00 0.00 4.44
2318 15658 0.034574 TGGGGATCCACAAACCATCG 60.035 55.000 16.35 0.00 38.32 3.84
2330 15670 4.856801 CCATCGCCCAGGAACCCG 62.857 72.222 0.00 0.00 0.00 5.28
2383 15725 8.928448 TGAACTTTCTTCTCAGGTATGCTATAT 58.072 33.333 0.00 0.00 0.00 0.86
2409 15751 2.885894 TGCTGAATGTGATGTTGCTGAA 59.114 40.909 0.00 0.00 0.00 3.02
2446 15788 9.401058 AGTTCTAGTATGAATTTGATTTGAGGG 57.599 33.333 0.00 0.00 0.00 4.30
2447 15789 9.396022 GTTCTAGTATGAATTTGATTTGAGGGA 57.604 33.333 0.00 0.00 0.00 4.20
2448 15790 9.973661 TTCTAGTATGAATTTGATTTGAGGGAA 57.026 29.630 0.00 0.00 0.00 3.97
2449 15791 9.973661 TCTAGTATGAATTTGATTTGAGGGAAA 57.026 29.630 0.00 0.00 0.00 3.13
2532 15874 4.923281 CGTTCAATTTCAAAATCTGGGGTC 59.077 41.667 0.00 0.00 0.00 4.46
2687 16048 8.043710 GCAGCTAAATAACCTCAGATGGTATAT 58.956 37.037 0.00 0.00 39.83 0.86
2697 16058 5.104610 CCTCAGATGGTATATATGGCTGCTT 60.105 44.000 0.00 0.00 0.00 3.91
3052 16423 8.129211 CACCTTCTTAGTTTCTGTAACCTTTTG 58.871 37.037 0.00 0.00 37.46 2.44
3060 16431 6.265422 AGTTTCTGTAACCTTTTGCTATGCTT 59.735 34.615 0.00 0.00 37.46 3.91
3074 16451 5.787380 TGCTATGCTTCATATACTGTCTGG 58.213 41.667 0.00 0.00 0.00 3.86
3125 16504 2.623889 ACGTGTCTCTCTGTTGCTACTT 59.376 45.455 0.00 0.00 0.00 2.24
3145 16524 8.015658 GCTACTTACATTGTTTACAACTTCAGG 58.984 37.037 0.00 0.00 38.86 3.86
3147 16530 7.927048 ACTTACATTGTTTACAACTTCAGGAC 58.073 34.615 0.00 0.00 38.86 3.85
3150 16533 6.795399 ACATTGTTTACAACTTCAGGACTTG 58.205 36.000 0.00 0.00 38.86 3.16
3151 16564 4.893424 TGTTTACAACTTCAGGACTTGC 57.107 40.909 0.00 0.00 0.00 4.01
3173 16586 4.617298 GCTGCGTAAAACAATGGTATTGGT 60.617 41.667 6.51 0.00 0.00 3.67
3174 16587 5.392165 GCTGCGTAAAACAATGGTATTGGTA 60.392 40.000 6.51 0.00 0.00 3.25
3175 16588 6.679392 GCTGCGTAAAACAATGGTATTGGTAT 60.679 38.462 6.51 0.00 0.00 2.73
3191 16604 9.733556 GGTATTGGTATTATCATGTGGTATTGA 57.266 33.333 0.00 0.00 0.00 2.57
3213 16628 9.775854 ATTGATCTCCTAGAGTGATTACATTTG 57.224 33.333 0.00 0.00 0.00 2.32
3265 16680 1.808945 GGACTGCAGTGGAAATGACAG 59.191 52.381 27.27 0.00 40.22 3.51
3296 16711 2.286365 ATCCGGAAACAGCCTTTTCA 57.714 45.000 9.01 0.00 37.24 2.69
3480 21122 2.628657 AGTCCCACTGTCTGACAACTAC 59.371 50.000 12.16 6.21 0.00 2.73
3528 21170 6.223852 TGAGACATGTAGAAAGGTTGAGAAC 58.776 40.000 0.00 0.00 0.00 3.01
3589 21239 0.391130 TCTACCGTTCCATGCTGCAC 60.391 55.000 3.57 0.00 0.00 4.57
3644 21294 6.732896 AGAGTTCCTGAAGAAACAGACTAA 57.267 37.500 0.00 0.00 39.94 2.24
3651 21301 5.507482 CCTGAAGAAACAGACTAACGACTCA 60.507 44.000 0.00 0.00 39.94 3.41
3689 21339 6.377327 CACAGACAGGTGTGTATTCTTTTT 57.623 37.500 1.63 0.00 42.52 1.94
3708 21358 3.799281 TTTCTTTTTGGCACAGACAGG 57.201 42.857 0.00 0.00 42.39 4.00
3709 21359 2.435372 TCTTTTTGGCACAGACAGGT 57.565 45.000 0.00 0.00 42.39 4.00
3710 21360 2.023673 TCTTTTTGGCACAGACAGGTG 58.976 47.619 0.00 0.00 42.39 4.00
3711 21361 1.750778 CTTTTTGGCACAGACAGGTGT 59.249 47.619 0.00 0.00 42.39 4.16
3712 21362 2.719531 TTTTGGCACAGACAGGTGTA 57.280 45.000 0.00 0.00 42.39 2.90
3713 21363 2.949177 TTTGGCACAGACAGGTGTAT 57.051 45.000 0.00 0.00 42.39 2.29
3714 21364 4.359434 TTTTGGCACAGACAGGTGTATA 57.641 40.909 0.00 0.00 42.39 1.47
3715 21365 4.568072 TTTGGCACAGACAGGTGTATAT 57.432 40.909 0.00 0.00 42.39 0.86
3716 21366 4.568072 TTGGCACAGACAGGTGTATATT 57.432 40.909 0.00 0.00 42.39 1.28
3717 21367 4.137116 TGGCACAGACAGGTGTATATTC 57.863 45.455 0.00 0.00 40.89 1.75
3718 21368 3.774766 TGGCACAGACAGGTGTATATTCT 59.225 43.478 0.00 0.00 40.89 2.40
3719 21369 4.225042 TGGCACAGACAGGTGTATATTCTT 59.775 41.667 0.00 0.00 40.89 2.52
3720 21370 5.186198 GGCACAGACAGGTGTATATTCTTT 58.814 41.667 0.00 0.00 40.89 2.52
3721 21371 5.648092 GGCACAGACAGGTGTATATTCTTTT 59.352 40.000 0.00 0.00 40.89 2.27
3722 21372 6.151144 GGCACAGACAGGTGTATATTCTTTTT 59.849 38.462 0.00 0.00 40.89 1.94
3741 21391 4.799564 TTTTTCTTTTGCACAGACAGGT 57.200 36.364 0.00 0.00 0.00 4.00
3742 21392 3.781079 TTTCTTTTGCACAGACAGGTG 57.219 42.857 0.00 0.00 41.72 4.00
3743 21393 2.418368 TCTTTTGCACAGACAGGTGT 57.582 45.000 0.00 0.00 40.89 4.16
3744 21394 3.552132 TCTTTTGCACAGACAGGTGTA 57.448 42.857 0.00 0.00 40.89 2.90
3745 21395 4.085357 TCTTTTGCACAGACAGGTGTAT 57.915 40.909 0.00 0.00 40.89 2.29
3746 21396 5.222079 TCTTTTGCACAGACAGGTGTATA 57.778 39.130 0.00 0.00 40.89 1.47
3747 21397 5.804639 TCTTTTGCACAGACAGGTGTATAT 58.195 37.500 0.00 0.00 40.89 0.86
3748 21398 6.237901 TCTTTTGCACAGACAGGTGTATATT 58.762 36.000 0.00 0.00 40.89 1.28
3749 21399 6.371548 TCTTTTGCACAGACAGGTGTATATTC 59.628 38.462 0.00 0.00 40.89 1.75
3750 21400 5.420725 TTGCACAGACAGGTGTATATTCT 57.579 39.130 0.00 0.00 40.89 2.40
3751 21401 5.420725 TGCACAGACAGGTGTATATTCTT 57.579 39.130 0.00 0.00 40.89 2.52
3752 21402 5.804639 TGCACAGACAGGTGTATATTCTTT 58.195 37.500 0.00 0.00 40.89 2.52
3753 21403 6.237901 TGCACAGACAGGTGTATATTCTTTT 58.762 36.000 0.00 0.00 40.89 2.27
3754 21404 6.714810 TGCACAGACAGGTGTATATTCTTTTT 59.285 34.615 0.00 0.00 40.89 1.94
3776 21426 3.275617 TTTTGCACAGACAGGTGTAGT 57.724 42.857 0.00 0.00 40.89 2.73
3777 21427 4.409718 TTTTGCACAGACAGGTGTAGTA 57.590 40.909 0.00 0.00 40.89 1.82
3778 21428 4.617253 TTTGCACAGACAGGTGTAGTAT 57.383 40.909 0.00 0.00 40.89 2.12
3779 21429 4.617253 TTGCACAGACAGGTGTAGTATT 57.383 40.909 0.00 0.00 40.89 1.89
3785 21435 6.571731 GCACAGACAGGTGTAGTATTCAACTA 60.572 42.308 0.00 0.00 40.89 2.24
3822 21478 6.183360 TGCACTGGTAATTTCTGGTTTTGAAT 60.183 34.615 0.00 0.00 0.00 2.57
3824 21480 7.661040 CACTGGTAATTTCTGGTTTTGAATCT 58.339 34.615 0.00 0.00 0.00 2.40
3828 21485 8.673711 TGGTAATTTCTGGTTTTGAATCTATCG 58.326 33.333 0.00 0.00 0.00 2.92
3836 21493 8.092068 TCTGGTTTTGAATCTATCGTTTCACTA 58.908 33.333 0.00 0.00 31.87 2.74
3842 21499 9.483916 TTTGAATCTATCGTTTCACTAAACTGA 57.516 29.630 0.00 0.00 42.39 3.41
3864 21523 9.857656 ACTGATGGACTGAATGTATCATTTATT 57.142 29.630 0.00 0.00 37.44 1.40
4006 21665 3.670377 GGCGACGGCAAGGCTTTT 61.670 61.111 17.49 0.00 42.47 2.27
4118 21777 1.903183 AGTTCTAGAAGTGGGGCTGAC 59.097 52.381 12.13 0.00 0.00 3.51
4121 21780 0.173708 CTAGAAGTGGGGCTGACGAC 59.826 60.000 0.00 0.00 0.00 4.34
4139 21798 4.767255 GCTCCTCTGCCCCACACG 62.767 72.222 0.00 0.00 0.00 4.49
4162 21821 3.782656 GCTCTAGCTAGTACTCCCTCT 57.217 52.381 20.10 0.00 38.21 3.69
4163 21822 3.408634 GCTCTAGCTAGTACTCCCTCTG 58.591 54.545 20.10 0.00 38.21 3.35
4164 21823 3.181448 GCTCTAGCTAGTACTCCCTCTGT 60.181 52.174 20.10 0.00 38.21 3.41
4165 21824 4.638304 CTCTAGCTAGTACTCCCTCTGTC 58.362 52.174 20.10 0.00 0.00 3.51
4166 21825 2.740506 AGCTAGTACTCCCTCTGTCC 57.259 55.000 0.00 0.00 0.00 4.02
4167 21826 1.215924 AGCTAGTACTCCCTCTGTCCC 59.784 57.143 0.00 0.00 0.00 4.46
4168 21827 1.063867 GCTAGTACTCCCTCTGTCCCA 60.064 57.143 0.00 0.00 0.00 4.37
4169 21828 2.623502 GCTAGTACTCCCTCTGTCCCAA 60.624 54.545 0.00 0.00 0.00 4.12
4170 21829 2.715763 AGTACTCCCTCTGTCCCAAA 57.284 50.000 0.00 0.00 0.00 3.28
4171 21830 2.986050 AGTACTCCCTCTGTCCCAAAA 58.014 47.619 0.00 0.00 0.00 2.44
4172 21831 3.532102 AGTACTCCCTCTGTCCCAAAAT 58.468 45.455 0.00 0.00 0.00 1.82
4173 21832 3.916989 AGTACTCCCTCTGTCCCAAAATT 59.083 43.478 0.00 0.00 0.00 1.82
4174 21833 3.441500 ACTCCCTCTGTCCCAAAATTC 57.558 47.619 0.00 0.00 0.00 2.17
4175 21834 2.989571 ACTCCCTCTGTCCCAAAATTCT 59.010 45.455 0.00 0.00 0.00 2.40
4176 21835 3.399305 ACTCCCTCTGTCCCAAAATTCTT 59.601 43.478 0.00 0.00 0.00 2.52
4177 21836 3.760684 CTCCCTCTGTCCCAAAATTCTTG 59.239 47.826 0.00 0.00 0.00 3.02
4178 21837 3.140144 TCCCTCTGTCCCAAAATTCTTGT 59.860 43.478 0.00 0.00 0.00 3.16
4179 21838 3.507622 CCCTCTGTCCCAAAATTCTTGTC 59.492 47.826 0.00 0.00 0.00 3.18
4180 21839 4.401925 CCTCTGTCCCAAAATTCTTGTCT 58.598 43.478 0.00 0.00 0.00 3.41
4181 21840 4.829492 CCTCTGTCCCAAAATTCTTGTCTT 59.171 41.667 0.00 0.00 0.00 3.01
4182 21841 6.003950 CCTCTGTCCCAAAATTCTTGTCTTA 58.996 40.000 0.00 0.00 0.00 2.10
4183 21842 6.150140 CCTCTGTCCCAAAATTCTTGTCTTAG 59.850 42.308 0.00 0.00 0.00 2.18
4184 21843 6.837312 TCTGTCCCAAAATTCTTGTCTTAGA 58.163 36.000 0.00 0.00 0.00 2.10
4185 21844 7.461749 TCTGTCCCAAAATTCTTGTCTTAGAT 58.538 34.615 0.00 0.00 0.00 1.98
4186 21845 7.944554 TCTGTCCCAAAATTCTTGTCTTAGATT 59.055 33.333 0.00 0.00 0.00 2.40
4187 21846 8.477419 TGTCCCAAAATTCTTGTCTTAGATTT 57.523 30.769 0.00 0.00 0.00 2.17
4188 21847 8.359642 TGTCCCAAAATTCTTGTCTTAGATTTG 58.640 33.333 0.00 0.00 29.84 2.32
4189 21848 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
4190 21849 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
4191 21850 8.359642 CCCAAAATTCTTGTCTTAGATTTGTCA 58.640 33.333 0.00 0.00 28.79 3.58
4192 21851 9.918630 CCAAAATTCTTGTCTTAGATTTGTCAT 57.081 29.630 0.00 0.00 28.79 3.06
4196 21855 9.653287 AATTCTTGTCTTAGATTTGTCATACGA 57.347 29.630 0.00 0.00 0.00 3.43
4197 21856 9.653287 ATTCTTGTCTTAGATTTGTCATACGAA 57.347 29.630 0.00 0.00 0.00 3.85
4198 21857 9.653287 TTCTTGTCTTAGATTTGTCATACGAAT 57.347 29.630 0.00 0.00 35.00 3.34
4199 21858 9.087424 TCTTGTCTTAGATTTGTCATACGAATG 57.913 33.333 0.00 0.00 32.55 2.67
4200 21859 8.771920 TTGTCTTAGATTTGTCATACGAATGT 57.228 30.769 0.00 0.00 32.55 2.71
4201 21860 9.863845 TTGTCTTAGATTTGTCATACGAATGTA 57.136 29.630 0.00 0.00 32.55 2.29
4210 21869 9.817809 ATTTGTCATACGAATGTATCTAACACT 57.182 29.630 0.00 0.00 42.09 3.55
4232 21891 9.745880 ACACTAAAATGTAACTAGATACATCCG 57.254 33.333 21.77 14.02 43.83 4.18
4233 21892 9.745880 CACTAAAATGTAACTAGATACATCCGT 57.254 33.333 21.77 14.49 43.83 4.69
4264 21923 9.546428 AGACAAATTTAAGACAAGAATTTTGGG 57.454 29.630 0.00 0.00 33.39 4.12
4265 21924 9.541143 GACAAATTTAAGACAAGAATTTTGGGA 57.459 29.630 0.00 0.00 33.39 4.37
4266 21925 9.325198 ACAAATTTAAGACAAGAATTTTGGGAC 57.675 29.630 0.00 0.00 33.39 4.46
4267 21926 8.487176 CAAATTTAAGACAAGAATTTTGGGACG 58.513 33.333 0.00 0.00 32.35 4.79
4268 21927 5.699097 TTAAGACAAGAATTTTGGGACGG 57.301 39.130 0.00 0.00 0.00 4.79
4269 21928 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
4270 21929 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
4271 21930 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
4272 21931 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
4273 21932 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
4274 21933 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
4275 21934 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
4276 21935 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
4285 21944 4.141551 GGGACGGAGGGAGTATTATTTTGT 60.142 45.833 0.00 0.00 0.00 2.83
4317 21976 5.121221 TGATGATGTATACGCACTAGTGG 57.879 43.478 23.95 15.85 0.00 4.00
4321 21980 1.202211 TGTATACGCACTAGTGGCACG 60.202 52.381 23.95 19.90 0.00 5.34
4345 22004 6.457122 CGTCTAGGAAGGATATGTATGCTACG 60.457 46.154 0.00 0.00 32.93 3.51
4346 22005 6.374894 GTCTAGGAAGGATATGTATGCTACGT 59.625 42.308 0.00 0.00 32.93 3.57
4348 22007 4.220821 AGGAAGGATATGTATGCTACGTGG 59.779 45.833 0.00 0.00 32.93 4.94
4349 22008 4.021368 GGAAGGATATGTATGCTACGTGGT 60.021 45.833 0.00 0.00 32.93 4.16
4350 22009 5.184479 GGAAGGATATGTATGCTACGTGGTA 59.816 44.000 0.00 0.00 32.93 3.25
4351 22010 6.127423 GGAAGGATATGTATGCTACGTGGTAT 60.127 42.308 7.74 7.74 32.93 2.73
4359 22018 2.888594 TGCTACGTGGTATTTCTGCTC 58.111 47.619 0.00 0.00 0.00 4.26
4393 22052 6.319405 TGTGTGCTGCTGATCATACATTTATT 59.681 34.615 0.00 0.00 31.04 1.40
4394 22053 6.854892 GTGTGCTGCTGATCATACATTTATTC 59.145 38.462 0.00 0.00 0.00 1.75
4395 22054 6.543100 TGTGCTGCTGATCATACATTTATTCA 59.457 34.615 0.00 0.00 0.00 2.57
4396 22055 7.067251 TGTGCTGCTGATCATACATTTATTCAA 59.933 33.333 0.00 0.00 0.00 2.69
4430 22089 7.672983 AAACATGTGTAGTACAATGAGAAGG 57.327 36.000 21.84 5.51 43.77 3.46
4433 22092 3.187700 GTGTAGTACAATGAGAAGGGCG 58.812 50.000 4.11 0.00 0.00 6.13
4442 22102 1.344065 TGAGAAGGGCGAGGTGTTTA 58.656 50.000 0.00 0.00 0.00 2.01
4451 22111 4.398044 AGGGCGAGGTGTTTAATAACATTG 59.602 41.667 0.00 0.00 45.41 2.82
4478 22138 3.418022 TGCAAGGCACTCATGTTCA 57.582 47.368 0.00 0.00 38.49 3.18
4479 22139 1.241165 TGCAAGGCACTCATGTTCAG 58.759 50.000 0.00 0.00 38.49 3.02
4480 22140 1.202794 TGCAAGGCACTCATGTTCAGA 60.203 47.619 0.00 0.00 38.49 3.27
4481 22141 2.089980 GCAAGGCACTCATGTTCAGAT 58.910 47.619 0.00 0.00 38.49 2.90
4484 22144 4.763073 CAAGGCACTCATGTTCAGATAGA 58.237 43.478 0.00 0.00 38.49 1.98
4494 22154 9.140874 ACTCATGTTCAGATAGATGATTCAGTA 57.859 33.333 0.00 0.00 0.00 2.74
4495 22155 9.628746 CTCATGTTCAGATAGATGATTCAGTAG 57.371 37.037 0.00 0.00 0.00 2.57
4496 22156 9.140874 TCATGTTCAGATAGATGATTCAGTAGT 57.859 33.333 0.00 0.00 0.00 2.73
4510 22170 7.041721 TGATTCAGTAGTATAAGTGGCAACTG 58.958 38.462 0.00 5.54 36.51 3.16
4512 22172 6.208988 TCAGTAGTATAAGTGGCAACTGAG 57.791 41.667 9.63 0.00 37.53 3.35
4513 22173 5.127194 TCAGTAGTATAAGTGGCAACTGAGG 59.873 44.000 9.63 0.00 37.53 3.86
4518 22178 6.192773 AGTATAAGTGGCAACTGAGGTAGTA 58.807 40.000 0.00 0.00 39.18 1.82
4528 22192 3.027412 ACTGAGGTAGTAGTGGCAGATG 58.973 50.000 0.00 0.00 38.04 2.90
4533 22197 3.322254 AGGTAGTAGTGGCAGATGCATAC 59.678 47.826 0.00 5.35 44.36 2.39
4575 22244 2.030540 ACTTGTTAATGCTGCTGTGCTG 60.031 45.455 0.00 0.00 0.00 4.41
4579 22248 2.681848 GTTAATGCTGCTGTGCTGATCT 59.318 45.455 0.00 0.00 0.00 2.75
4581 22250 0.035343 ATGCTGCTGTGCTGATCTGT 60.035 50.000 0.00 0.00 0.00 3.41
4598 22267 6.826668 TGATCTGTTTCAGAAAGGTGTAGAA 58.173 36.000 0.00 0.00 44.04 2.10
4660 22329 2.108970 AGCAGATGAGATGAGAGCACA 58.891 47.619 0.00 0.00 0.00 4.57
4662 22331 2.803852 GCAGATGAGATGAGAGCACAGG 60.804 54.545 0.00 0.00 0.00 4.00
4663 22332 1.413445 AGATGAGATGAGAGCACAGGC 59.587 52.381 0.00 0.00 41.61 4.85
4698 22390 5.472137 GCCTGTCAACAGTACCTTGATTTAA 59.528 40.000 9.19 0.00 42.27 1.52
4700 22392 7.469456 GCCTGTCAACAGTACCTTGATTTAAAA 60.469 37.037 9.19 0.00 42.27 1.52
4728 22420 9.500785 AGAAAGAAAGTTCAAACAATTCCAAAA 57.499 25.926 7.43 0.00 31.42 2.44
4779 22471 2.097444 GCGAACTCCGTGCAAAATTTTG 60.097 45.455 23.74 23.74 41.15 2.44
4788 22480 5.020758 CCGTGCAAAATTTTGTGAAGTTTG 58.979 37.500 27.13 11.78 40.24 2.93
4839 22531 1.967319 AAATCAGGCGTGAACAGTGT 58.033 45.000 13.87 0.00 35.88 3.55
4840 22532 2.831685 AATCAGGCGTGAACAGTGTA 57.168 45.000 13.87 0.00 35.88 2.90
4858 22550 8.614994 ACAGTGTAATTTTCAAAAGTTTCTCG 57.385 30.769 0.00 0.00 0.00 4.04
4860 22552 7.700656 CAGTGTAATTTTCAAAAGTTTCTCGGT 59.299 33.333 0.00 0.00 0.00 4.69
4862 22554 7.698970 GTGTAATTTTCAAAAGTTTCTCGGTCA 59.301 33.333 0.00 0.00 0.00 4.02
4906 22600 0.809385 GAGATCCACGGAGTTCACGA 59.191 55.000 0.00 0.00 41.61 4.35
4908 22602 1.825474 AGATCCACGGAGTTCACGAAT 59.175 47.619 0.00 0.00 41.61 3.34
4910 22604 3.637229 AGATCCACGGAGTTCACGAATAT 59.363 43.478 0.00 0.00 41.61 1.28
4943 22637 6.397272 TGCACCACATAAAAAGATTGGAATC 58.603 36.000 0.00 0.00 35.64 2.52
4997 22691 0.179020 TGTTCATGCCCGGGATCATC 60.179 55.000 29.31 6.34 0.00 2.92
4998 22692 0.890996 GTTCATGCCCGGGATCATCC 60.891 60.000 29.31 5.43 35.23 3.51
5057 22751 3.924918 TGAACTCTGCTGACTGACTAC 57.075 47.619 0.00 0.00 0.00 2.73
5058 22752 3.491342 TGAACTCTGCTGACTGACTACT 58.509 45.455 0.00 0.00 0.00 2.57
5059 22753 3.254411 TGAACTCTGCTGACTGACTACTG 59.746 47.826 0.00 0.00 0.00 2.74
5060 22754 2.166829 ACTCTGCTGACTGACTACTGG 58.833 52.381 0.00 0.00 0.00 4.00
5061 22755 1.476085 CTCTGCTGACTGACTACTGGG 59.524 57.143 0.00 0.00 0.00 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 105 4.552355 CTCATGCAGCTTGATTTTCACAA 58.448 39.130 11.23 0.00 0.00 3.33
108 109 3.057033 ACACCTCATGCAGCTTGATTTTC 60.057 43.478 11.23 0.00 0.00 2.29
125 126 8.554490 AATGGATATCTCTTAAGTACACACCT 57.446 34.615 1.63 0.00 0.00 4.00
236 237 4.739137 GCAACCCAGCACTTCATTGTAAAA 60.739 41.667 0.00 0.00 0.00 1.52
253 254 7.902527 TAAAATCACACTTTTTAAGGGCAACCC 60.903 37.037 0.00 0.00 42.50 4.11
369 372 1.228552 ATAATCGGGTGCCATGCCC 60.229 57.895 0.00 0.00 42.68 5.36
401 404 4.926238 AGTGAAGCGAGTTGTTGAGAATAG 59.074 41.667 0.00 0.00 0.00 1.73
507 510 2.757099 GAACAGCCATGCCCAGGG 60.757 66.667 0.00 0.00 34.91 4.45
509 512 1.303888 ACTGAACAGCCATGCCCAG 60.304 57.895 1.46 0.00 36.07 4.45
512 515 1.303561 TCCACTGAACAGCCATGCC 60.304 57.895 1.46 0.00 0.00 4.40
618 1965 5.293560 TGTTTCATGTACTGATGACAACGA 58.706 37.500 0.00 0.00 31.92 3.85
619 1966 5.590104 TGTTTCATGTACTGATGACAACG 57.410 39.130 0.00 0.00 31.92 4.10
622 1969 5.559770 ACCATGTTTCATGTACTGATGACA 58.440 37.500 8.57 4.89 35.81 3.58
748 2096 3.460825 TCAAGTTAGCTGGGGGAACTAT 58.539 45.455 0.00 0.00 33.13 2.12
778 2126 4.141251 AGTTAGCTGGGGAGTTCTCAAAAA 60.141 41.667 0.00 0.00 0.00 1.94
780 2128 2.979678 AGTTAGCTGGGGAGTTCTCAAA 59.020 45.455 0.00 0.00 0.00 2.69
781 2129 2.621070 AGTTAGCTGGGGAGTTCTCAA 58.379 47.619 0.00 0.00 0.00 3.02
784 2132 2.621070 TCAAGTTAGCTGGGGAGTTCT 58.379 47.619 0.00 0.00 0.00 3.01
786 2134 2.025887 CCATCAAGTTAGCTGGGGAGTT 60.026 50.000 0.00 0.00 0.00 3.01
787 2135 1.561542 CCATCAAGTTAGCTGGGGAGT 59.438 52.381 0.00 0.00 0.00 3.85
788 2136 1.561542 ACCATCAAGTTAGCTGGGGAG 59.438 52.381 0.00 0.00 32.89 4.30
790 2138 2.505819 AGTACCATCAAGTTAGCTGGGG 59.494 50.000 0.00 0.00 32.89 4.96
792 2140 4.207891 ACAGTACCATCAAGTTAGCTGG 57.792 45.455 0.00 0.00 34.84 4.85
794 2142 4.455877 GCAAACAGTACCATCAAGTTAGCT 59.544 41.667 0.00 0.00 0.00 3.32
795 2143 4.215399 TGCAAACAGTACCATCAAGTTAGC 59.785 41.667 0.00 0.00 0.00 3.09
797 2145 6.892658 AATGCAAACAGTACCATCAAGTTA 57.107 33.333 0.00 0.00 0.00 2.24
799 2147 5.789643 AAATGCAAACAGTACCATCAAGT 57.210 34.783 0.00 0.00 0.00 3.16
800 2148 6.364165 CAGAAAATGCAAACAGTACCATCAAG 59.636 38.462 0.00 0.00 0.00 3.02
801 2149 6.215121 CAGAAAATGCAAACAGTACCATCAA 58.785 36.000 0.00 0.00 0.00 2.57
806 2154 4.584327 ACCAGAAAATGCAAACAGTACC 57.416 40.909 0.00 0.00 0.00 3.34
807 2155 5.587289 TGAACCAGAAAATGCAAACAGTAC 58.413 37.500 0.00 0.00 0.00 2.73
808 2156 5.843673 TGAACCAGAAAATGCAAACAGTA 57.156 34.783 0.00 0.00 0.00 2.74
810 2158 6.129115 CGTTATGAACCAGAAAATGCAAACAG 60.129 38.462 0.00 0.00 0.00 3.16
812 2160 5.689961 ACGTTATGAACCAGAAAATGCAAAC 59.310 36.000 0.00 0.00 0.00 2.93
814 2162 5.009110 TCACGTTATGAACCAGAAAATGCAA 59.991 36.000 0.00 0.00 33.02 4.08
815 2163 4.517075 TCACGTTATGAACCAGAAAATGCA 59.483 37.500 0.00 0.00 33.02 3.96
816 2164 5.041951 TCACGTTATGAACCAGAAAATGC 57.958 39.130 0.00 0.00 33.02 3.56
817 2165 6.797033 GTCTTCACGTTATGAACCAGAAAATG 59.203 38.462 0.00 0.00 42.62 2.32
818 2166 6.072673 GGTCTTCACGTTATGAACCAGAAAAT 60.073 38.462 0.00 0.00 42.62 1.82
820 2168 4.753107 GGTCTTCACGTTATGAACCAGAAA 59.247 41.667 0.00 0.00 42.62 2.52
822 2170 3.613193 CGGTCTTCACGTTATGAACCAGA 60.613 47.826 0.00 0.00 42.62 3.86
835 2183 0.591659 GCCTGGAAAACGGTCTTCAC 59.408 55.000 0.00 0.00 0.00 3.18
836 2184 0.536460 GGCCTGGAAAACGGTCTTCA 60.536 55.000 0.00 0.00 0.00 3.02
837 2185 1.241990 GGGCCTGGAAAACGGTCTTC 61.242 60.000 0.84 0.00 0.00 2.87
838 2186 1.228459 GGGCCTGGAAAACGGTCTT 60.228 57.895 0.84 0.00 0.00 3.01
839 2187 2.411765 CTGGGCCTGGAAAACGGTCT 62.412 60.000 4.53 0.00 0.00 3.85
840 2188 1.971695 CTGGGCCTGGAAAACGGTC 60.972 63.158 4.53 0.00 0.00 4.79
841 2189 2.115266 CTGGGCCTGGAAAACGGT 59.885 61.111 4.53 0.00 0.00 4.83
842 2190 3.373565 GCTGGGCCTGGAAAACGG 61.374 66.667 12.70 0.00 0.00 4.44
843 2191 3.373565 GGCTGGGCCTGGAAAACG 61.374 66.667 12.70 0.00 46.69 3.60
886 2234 3.499737 CTTCGTGGGCCGTGATGC 61.500 66.667 0.00 0.00 37.94 3.91
1325 6239 5.110598 TGCTAAAATCCGCGTAACAGATTA 58.889 37.500 4.92 0.00 30.21 1.75
1339 6253 6.144402 CGGCCATGAACATTTATGCTAAAATC 59.856 38.462 2.24 0.00 0.00 2.17
1349 6263 2.223803 AACCCGGCCATGAACATTTA 57.776 45.000 2.24 0.00 0.00 1.40
1394 6309 1.135972 CATTTCACGCAGGCACTACAC 60.136 52.381 0.00 0.00 36.02 2.90
1403 6327 2.124011 AAGCAACACATTTCACGCAG 57.876 45.000 0.00 0.00 0.00 5.18
1406 6332 3.486841 CAGGAAAAGCAACACATTTCACG 59.513 43.478 0.00 0.00 35.32 4.35
1490 6418 1.434188 TGAGTCTTCCAAAGCTCCCA 58.566 50.000 0.00 0.00 33.54 4.37
1499 6427 1.004560 CTGCGCCTTGAGTCTTCCA 60.005 57.895 4.18 0.00 0.00 3.53
1573 6502 4.465512 CGATGCTTGTGCGGCCAC 62.466 66.667 2.24 0.00 43.34 5.01
1608 6537 6.149640 CCATCTTCATCAGAATCAGCATAAGG 59.850 42.308 0.00 0.00 34.16 2.69
1657 6586 1.221466 TTTTGCGCGGTCTGAGACAG 61.221 55.000 15.33 11.83 33.68 3.51
1858 12167 0.105709 AAACCCACTGTCCAAAGGGG 60.106 55.000 5.28 0.00 45.83 4.79
1992 14969 4.664150 TTTTTGAGGGCAGTAAACCAAG 57.336 40.909 0.00 0.00 0.00 3.61
2058 15053 5.823570 TGGACTAAGATACTGAGTACTGAGC 59.176 44.000 9.48 0.00 0.00 4.26
2091 15431 5.351465 CGTGCATAGGTGTAAGAATTCAGTT 59.649 40.000 8.44 0.00 0.00 3.16
2126 15466 3.808728 AGCACGTTTAGCATGTATGGAT 58.191 40.909 0.00 0.00 0.00 3.41
2133 15473 2.483877 TCAGGAAAGCACGTTTAGCATG 59.516 45.455 0.00 0.00 0.00 4.06
2165 15505 2.767394 TGCCATAGCCTAAGACGGTTTA 59.233 45.455 0.00 0.00 38.69 2.01
2231 15571 4.703703 GTCTTGCCAGACCCACTC 57.296 61.111 6.68 0.00 43.50 3.51
2383 15725 4.520111 AGCAACATCACATTCAGCAAGTAA 59.480 37.500 0.00 0.00 0.00 2.24
2456 15798 8.877864 AAATGACTCAACAGGTTATTCCATAA 57.122 30.769 0.00 0.00 39.02 1.90
2532 15874 1.408822 GCAACCATAGACCTGAAGGGG 60.409 57.143 0.56 0.00 40.27 4.79
2687 16048 3.758554 GACTGGAAAAAGAAGCAGCCATA 59.241 43.478 0.00 0.00 0.00 2.74
3052 16423 6.030548 TCCAGACAGTATATGAAGCATAGC 57.969 41.667 0.00 0.00 29.42 2.97
3060 16431 7.482169 AGAAGTGTTTCCAGACAGTATATGA 57.518 36.000 0.00 0.00 33.02 2.15
3106 16485 5.122512 TGTAAGTAGCAACAGAGAGACAC 57.877 43.478 0.00 0.00 0.00 3.67
3145 16524 2.979813 CCATTGTTTTACGCAGCAAGTC 59.020 45.455 0.00 0.00 0.00 3.01
3147 16530 3.011949 ACCATTGTTTTACGCAGCAAG 57.988 42.857 0.00 0.00 0.00 4.01
3150 16533 3.857093 CCAATACCATTGTTTTACGCAGC 59.143 43.478 0.00 0.00 0.00 5.25
3151 16564 5.054390 ACCAATACCATTGTTTTACGCAG 57.946 39.130 0.00 0.00 0.00 5.18
3174 16587 9.552695 TCTAGGAGATCAATACCACATGATAAT 57.447 33.333 0.00 0.00 36.45 1.28
3175 16588 8.956446 TCTAGGAGATCAATACCACATGATAA 57.044 34.615 0.00 0.00 36.45 1.75
3191 16604 8.311395 TGTCAAATGTAATCACTCTAGGAGAT 57.689 34.615 1.31 0.00 33.32 2.75
3213 16628 8.758633 ATCTGTAGTGTAACAGTACAAATGTC 57.241 34.615 5.44 0.00 45.69 3.06
3265 16680 5.371115 TGTTTCCGGATTCTTTTCATCAC 57.629 39.130 4.15 0.00 0.00 3.06
3296 16711 6.823689 TCTTTAGAAGTGCTGTTCTCTTGTTT 59.176 34.615 4.61 0.00 37.89 2.83
3445 21080 7.013369 AGACAGTGGGACTTTCTTATGTTTTTC 59.987 37.037 0.00 0.00 31.68 2.29
3644 21294 1.340248 ACACGAGGAACATTGAGTCGT 59.660 47.619 0.00 0.00 44.32 4.34
3651 21301 1.202639 TCTGTGCACACGAGGAACATT 60.203 47.619 17.42 0.00 0.00 2.71
3686 21336 4.020662 ACCTGTCTGTGCCAAAAAGAAAAA 60.021 37.500 0.00 0.00 0.00 1.94
3687 21337 3.513515 ACCTGTCTGTGCCAAAAAGAAAA 59.486 39.130 0.00 0.00 0.00 2.29
3688 21338 3.096092 ACCTGTCTGTGCCAAAAAGAAA 58.904 40.909 0.00 0.00 0.00 2.52
3689 21339 2.426738 CACCTGTCTGTGCCAAAAAGAA 59.573 45.455 0.00 0.00 0.00 2.52
3690 21340 2.023673 CACCTGTCTGTGCCAAAAAGA 58.976 47.619 0.00 0.00 0.00 2.52
3691 21341 1.750778 ACACCTGTCTGTGCCAAAAAG 59.249 47.619 0.00 0.00 39.93 2.27
3692 21342 1.846007 ACACCTGTCTGTGCCAAAAA 58.154 45.000 0.00 0.00 39.93 1.94
3693 21343 2.719531 TACACCTGTCTGTGCCAAAA 57.280 45.000 0.00 0.00 39.93 2.44
3694 21344 2.949177 ATACACCTGTCTGTGCCAAA 57.051 45.000 0.00 0.00 39.93 3.28
3695 21345 4.225042 AGAATATACACCTGTCTGTGCCAA 59.775 41.667 0.00 0.00 39.93 4.52
3696 21346 3.774766 AGAATATACACCTGTCTGTGCCA 59.225 43.478 0.00 0.00 39.93 4.92
3697 21347 4.408182 AGAATATACACCTGTCTGTGCC 57.592 45.455 0.00 0.00 39.93 5.01
3698 21348 6.743575 AAAAGAATATACACCTGTCTGTGC 57.256 37.500 0.00 0.00 39.93 4.57
3720 21370 4.021544 ACACCTGTCTGTGCAAAAGAAAAA 60.022 37.500 2.05 0.00 39.93 1.94
3721 21371 3.509575 ACACCTGTCTGTGCAAAAGAAAA 59.490 39.130 2.05 0.00 39.93 2.29
3722 21372 3.088532 ACACCTGTCTGTGCAAAAGAAA 58.911 40.909 2.05 0.00 39.93 2.52
3723 21373 2.722094 ACACCTGTCTGTGCAAAAGAA 58.278 42.857 2.05 0.00 39.93 2.52
3724 21374 2.418368 ACACCTGTCTGTGCAAAAGA 57.582 45.000 0.00 0.00 39.93 2.52
3725 21375 6.372659 AGAATATACACCTGTCTGTGCAAAAG 59.627 38.462 0.00 0.00 39.93 2.27
3726 21376 6.237901 AGAATATACACCTGTCTGTGCAAAA 58.762 36.000 0.00 0.00 39.93 2.44
3727 21377 5.804639 AGAATATACACCTGTCTGTGCAAA 58.195 37.500 0.00 0.00 39.93 3.68
3728 21378 5.420725 AGAATATACACCTGTCTGTGCAA 57.579 39.130 0.00 0.00 39.93 4.08
3729 21379 5.420725 AAGAATATACACCTGTCTGTGCA 57.579 39.130 0.00 0.00 39.93 4.57
3730 21380 6.743575 AAAAGAATATACACCTGTCTGTGC 57.256 37.500 0.00 0.00 39.93 4.57
3755 21405 3.616219 ACTACACCTGTCTGTGCAAAAA 58.384 40.909 0.00 0.00 39.93 1.94
3756 21406 3.275617 ACTACACCTGTCTGTGCAAAA 57.724 42.857 0.00 0.00 39.93 2.44
3757 21407 4.617253 ATACTACACCTGTCTGTGCAAA 57.383 40.909 0.00 0.00 39.93 3.68
3758 21408 4.039852 TGAATACTACACCTGTCTGTGCAA 59.960 41.667 0.00 0.00 39.93 4.08
3759 21409 3.576550 TGAATACTACACCTGTCTGTGCA 59.423 43.478 0.00 0.00 39.93 4.57
3760 21410 4.188247 TGAATACTACACCTGTCTGTGC 57.812 45.455 0.00 0.00 39.93 4.57
3761 21411 5.784177 AGTTGAATACTACACCTGTCTGTG 58.216 41.667 0.00 0.00 42.05 3.66
3762 21412 7.534723 TTAGTTGAATACTACACCTGTCTGT 57.465 36.000 0.00 0.00 39.05 3.41
3763 21413 7.870954 TGTTTAGTTGAATACTACACCTGTCTG 59.129 37.037 0.00 0.00 38.63 3.51
3764 21414 7.959175 TGTTTAGTTGAATACTACACCTGTCT 58.041 34.615 0.00 0.00 38.63 3.41
3765 21415 8.493547 GTTGTTTAGTTGAATACTACACCTGTC 58.506 37.037 0.00 0.00 38.63 3.51
3766 21416 7.988599 TGTTGTTTAGTTGAATACTACACCTGT 59.011 33.333 0.00 0.00 38.63 4.00
3767 21417 8.373048 TGTTGTTTAGTTGAATACTACACCTG 57.627 34.615 0.00 0.00 38.63 4.00
3768 21418 9.569122 AATGTTGTTTAGTTGAATACTACACCT 57.431 29.630 0.00 0.00 38.63 4.00
3774 21424 8.629158 TGCAGAAATGTTGTTTAGTTGAATACT 58.371 29.630 0.00 0.00 41.04 2.12
3775 21425 8.690840 GTGCAGAAATGTTGTTTAGTTGAATAC 58.309 33.333 0.00 0.00 0.00 1.89
3776 21426 8.629158 AGTGCAGAAATGTTGTTTAGTTGAATA 58.371 29.630 0.00 0.00 0.00 1.75
3777 21427 7.436080 CAGTGCAGAAATGTTGTTTAGTTGAAT 59.564 33.333 0.00 0.00 0.00 2.57
3778 21428 6.751425 CAGTGCAGAAATGTTGTTTAGTTGAA 59.249 34.615 0.00 0.00 0.00 2.69
3779 21429 6.264832 CAGTGCAGAAATGTTGTTTAGTTGA 58.735 36.000 0.00 0.00 0.00 3.18
3785 21435 5.590530 TTACCAGTGCAGAAATGTTGTTT 57.409 34.783 0.00 0.00 0.00 2.83
3828 21485 6.861065 TTCAGTCCATCAGTTTAGTGAAAC 57.139 37.500 0.00 0.00 44.56 2.78
3836 21493 8.585471 AAATGATACATTCAGTCCATCAGTTT 57.415 30.769 0.00 0.00 32.54 2.66
3864 21523 0.674581 CGAAGCTCTGCCACCATCAA 60.675 55.000 0.00 0.00 0.00 2.57
4006 21665 4.858680 TTGCCCACCGCGAACACA 62.859 61.111 8.23 0.00 42.08 3.72
4121 21780 4.767255 GTGTGGGGCAGAGGAGCG 62.767 72.222 0.00 0.00 34.64 5.03
4155 21814 3.728385 AGAATTTTGGGACAGAGGGAG 57.272 47.619 0.00 0.00 42.39 4.30
4156 21815 3.140144 ACAAGAATTTTGGGACAGAGGGA 59.860 43.478 5.68 0.00 42.39 4.20
4157 21816 3.500343 ACAAGAATTTTGGGACAGAGGG 58.500 45.455 5.68 0.00 42.39 4.30
4158 21817 4.401925 AGACAAGAATTTTGGGACAGAGG 58.598 43.478 5.68 0.00 42.39 3.69
4159 21818 6.936900 TCTAAGACAAGAATTTTGGGACAGAG 59.063 38.462 5.68 0.00 42.39 3.35
4160 21819 6.837312 TCTAAGACAAGAATTTTGGGACAGA 58.163 36.000 5.68 0.00 42.39 3.41
4161 21820 7.693969 ATCTAAGACAAGAATTTTGGGACAG 57.306 36.000 5.68 0.00 42.39 3.51
4162 21821 8.359642 CAAATCTAAGACAAGAATTTTGGGACA 58.640 33.333 5.68 0.00 28.49 4.02
4163 21822 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
4164 21823 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
4165 21824 8.359642 TGACAAATCTAAGACAAGAATTTTGGG 58.640 33.333 0.00 0.00 33.04 4.12
4166 21825 9.918630 ATGACAAATCTAAGACAAGAATTTTGG 57.081 29.630 0.00 0.00 33.04 3.28
4170 21829 9.653287 TCGTATGACAAATCTAAGACAAGAATT 57.347 29.630 0.00 0.00 0.00 2.17
4171 21830 9.653287 TTCGTATGACAAATCTAAGACAAGAAT 57.347 29.630 0.00 0.00 0.00 2.40
4172 21831 9.653287 ATTCGTATGACAAATCTAAGACAAGAA 57.347 29.630 0.00 0.00 0.00 2.52
4173 21832 9.087424 CATTCGTATGACAAATCTAAGACAAGA 57.913 33.333 0.00 0.00 33.37 3.02
4174 21833 8.873830 ACATTCGTATGACAAATCTAAGACAAG 58.126 33.333 9.19 0.00 35.65 3.16
4175 21834 8.771920 ACATTCGTATGACAAATCTAAGACAA 57.228 30.769 9.19 0.00 35.65 3.18
4184 21843 9.817809 AGTGTTAGATACATTCGTATGACAAAT 57.182 29.630 9.19 0.00 38.48 2.32
4206 21865 9.745880 CGGATGTATCTAGTTACATTTTAGTGT 57.254 33.333 21.77 4.20 41.67 3.55
4207 21866 9.745880 ACGGATGTATCTAGTTACATTTTAGTG 57.254 33.333 21.77 13.11 41.67 2.74
4238 21897 9.546428 CCCAAAATTCTTGTCTTAAATTTGTCT 57.454 29.630 0.00 0.00 33.95 3.41
4239 21898 9.541143 TCCCAAAATTCTTGTCTTAAATTTGTC 57.459 29.630 0.00 0.00 33.95 3.18
4240 21899 9.325198 GTCCCAAAATTCTTGTCTTAAATTTGT 57.675 29.630 0.00 0.00 33.95 2.83
4241 21900 8.487176 CGTCCCAAAATTCTTGTCTTAAATTTG 58.513 33.333 0.00 0.00 33.95 2.32
4242 21901 7.655732 CCGTCCCAAAATTCTTGTCTTAAATTT 59.344 33.333 0.00 0.00 34.86 1.82
4243 21902 7.014808 TCCGTCCCAAAATTCTTGTCTTAAATT 59.985 33.333 0.00 0.00 0.00 1.82
4244 21903 6.492087 TCCGTCCCAAAATTCTTGTCTTAAAT 59.508 34.615 0.00 0.00 0.00 1.40
4245 21904 5.828859 TCCGTCCCAAAATTCTTGTCTTAAA 59.171 36.000 0.00 0.00 0.00 1.52
4246 21905 5.378332 TCCGTCCCAAAATTCTTGTCTTAA 58.622 37.500 0.00 0.00 0.00 1.85
4247 21906 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
4248 21907 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
4249 21908 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
4250 21909 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
4251 21910 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
4252 21911 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
4253 21912 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
4254 21913 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
4255 21914 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
4256 21915 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
4257 21916 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
4258 21917 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
4259 21918 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
4260 21919 2.852714 TAATACTCCCTCCGTCCCAA 57.147 50.000 0.00 0.00 0.00 4.12
4261 21920 3.339713 AATAATACTCCCTCCGTCCCA 57.660 47.619 0.00 0.00 0.00 4.37
4262 21921 4.141551 ACAAAATAATACTCCCTCCGTCCC 60.142 45.833 0.00 0.00 0.00 4.46
4263 21922 5.032327 ACAAAATAATACTCCCTCCGTCC 57.968 43.478 0.00 0.00 0.00 4.79
4264 21923 6.814043 ACTACAAAATAATACTCCCTCCGTC 58.186 40.000 0.00 0.00 0.00 4.79
4265 21924 6.803366 ACTACAAAATAATACTCCCTCCGT 57.197 37.500 0.00 0.00 0.00 4.69
4266 21925 7.949434 ACTACTACAAAATAATACTCCCTCCG 58.051 38.462 0.00 0.00 0.00 4.63
4317 21976 5.403246 CATACATATCCTTCCTAGACGTGC 58.597 45.833 0.00 0.00 0.00 5.34
4321 21980 6.374894 ACGTAGCATACATATCCTTCCTAGAC 59.625 42.308 0.00 0.00 43.24 2.59
4345 22004 3.004106 GGCATGATGAGCAGAAATACCAC 59.996 47.826 0.00 0.00 0.00 4.16
4346 22005 3.117776 AGGCATGATGAGCAGAAATACCA 60.118 43.478 0.00 0.00 0.00 3.25
4348 22007 3.881688 ACAGGCATGATGAGCAGAAATAC 59.118 43.478 4.84 0.00 0.00 1.89
4349 22008 3.881089 CACAGGCATGATGAGCAGAAATA 59.119 43.478 4.84 0.00 0.00 1.40
4350 22009 2.688446 CACAGGCATGATGAGCAGAAAT 59.312 45.455 4.84 0.00 0.00 2.17
4351 22010 2.089201 CACAGGCATGATGAGCAGAAA 58.911 47.619 4.84 0.00 0.00 2.52
4359 22018 1.138883 GCAGCACACAGGCATGATG 59.861 57.895 4.84 4.03 35.33 3.07
4442 22102 7.877097 TGCCTTGCACTTATTTTCAATGTTATT 59.123 29.630 0.00 0.00 31.71 1.40
4479 22139 9.796120 GCCACTTATACTACTGAATCATCTATC 57.204 37.037 0.00 0.00 0.00 2.08
4480 22140 9.314133 TGCCACTTATACTACTGAATCATCTAT 57.686 33.333 0.00 0.00 0.00 1.98
4481 22141 8.706322 TGCCACTTATACTACTGAATCATCTA 57.294 34.615 0.00 0.00 0.00 1.98
4484 22144 7.712639 CAGTTGCCACTTATACTACTGAATCAT 59.287 37.037 0.00 0.00 38.78 2.45
4494 22154 5.024118 ACTACCTCAGTTGCCACTTATACT 58.976 41.667 0.00 0.00 31.59 2.12
4495 22155 5.340439 ACTACCTCAGTTGCCACTTATAC 57.660 43.478 0.00 0.00 31.59 1.47
4496 22156 6.096423 CACTACTACCTCAGTTGCCACTTATA 59.904 42.308 0.00 0.00 38.80 0.98
4497 22157 5.024118 ACTACTACCTCAGTTGCCACTTAT 58.976 41.667 0.00 0.00 38.80 1.73
4498 22158 4.219944 CACTACTACCTCAGTTGCCACTTA 59.780 45.833 0.00 0.00 38.80 2.24
4499 22159 3.006967 CACTACTACCTCAGTTGCCACTT 59.993 47.826 0.00 0.00 38.80 3.16
4500 22160 2.563179 CACTACTACCTCAGTTGCCACT 59.437 50.000 0.00 0.00 38.80 4.00
4510 22170 1.757118 TGCATCTGCCACTACTACCTC 59.243 52.381 0.00 0.00 41.18 3.85
4512 22172 2.918712 ATGCATCTGCCACTACTACC 57.081 50.000 0.00 0.00 41.18 3.18
4513 22173 3.004419 TCGTATGCATCTGCCACTACTAC 59.996 47.826 0.19 0.00 41.18 2.73
4518 22178 0.531532 GCTCGTATGCATCTGCCACT 60.532 55.000 0.19 0.00 41.18 4.00
4528 22192 5.287274 CAGCTTATACTGTATGCTCGTATGC 59.713 44.000 10.51 3.75 32.78 3.14
4533 22197 4.022762 AGTCCAGCTTATACTGTATGCTCG 60.023 45.833 10.51 4.79 35.83 5.03
4540 22204 6.316390 GCATTAACAAGTCCAGCTTATACTGT 59.684 38.462 0.00 0.00 35.27 3.55
4575 22244 7.572168 GCTTTCTACACCTTTCTGAAACAGATC 60.572 40.741 0.00 0.00 40.39 2.75
4579 22248 5.189928 TGCTTTCTACACCTTTCTGAAACA 58.810 37.500 0.00 0.00 0.00 2.83
4581 22250 7.936847 TCTTATGCTTTCTACACCTTTCTGAAA 59.063 33.333 2.44 2.44 0.00 2.69
4598 22267 5.416952 CCACCACATCTTTCTTCTTATGCTT 59.583 40.000 0.00 0.00 0.00 3.91
4662 22331 3.753272 TGTTGACAGGCTCATCTAAAAGC 59.247 43.478 0.00 0.00 37.80 3.51
4663 22332 5.542616 CTGTTGACAGGCTCATCTAAAAG 57.457 43.478 3.19 0.00 40.20 2.27
4752 22444 3.767230 CACGGAGTTCGCGCACAG 61.767 66.667 12.26 4.63 41.61 3.66
4779 22471 3.399330 TCCTCGAATGTCCAAACTTCAC 58.601 45.455 0.00 0.00 0.00 3.18
4826 22518 4.217754 TGAAAATTACACTGTTCACGCC 57.782 40.909 0.00 0.00 0.00 5.68
4829 22521 9.952341 GAAACTTTTGAAAATTACACTGTTCAC 57.048 29.630 0.00 0.00 30.00 3.18
4839 22531 8.079809 GGATGACCGAGAAACTTTTGAAAATTA 58.920 33.333 0.00 0.00 0.00 1.40
4840 22532 6.923508 GGATGACCGAGAAACTTTTGAAAATT 59.076 34.615 0.00 0.00 0.00 1.82
4885 22579 0.802607 GTGAACTCCGTGGATCTCGC 60.803 60.000 0.00 0.00 0.00 5.03
4890 22584 3.383505 TCATATTCGTGAACTCCGTGGAT 59.616 43.478 0.00 0.00 0.00 3.41
4906 22600 3.623703 TGTGGTGCAAGATGCTCATATT 58.376 40.909 3.78 0.00 45.31 1.28
4908 22602 2.785540 TGTGGTGCAAGATGCTCATA 57.214 45.000 3.78 0.00 45.31 2.15
4910 22604 2.785540 TATGTGGTGCAAGATGCTCA 57.214 45.000 3.78 0.02 45.31 4.26
4948 22642 9.166126 CCGCGATTTAAAATAGATAAAAGGTTC 57.834 33.333 8.23 0.00 0.00 3.62
5059 22753 4.424711 TTCCACATCCGCCAGCCC 62.425 66.667 0.00 0.00 0.00 5.19
5060 22754 2.825836 CTTCCACATCCGCCAGCC 60.826 66.667 0.00 0.00 0.00 4.85
5061 22755 1.817099 CTCTTCCACATCCGCCAGC 60.817 63.158 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.