Multiple sequence alignment - TraesCS3B01G568200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G568200 chr3B 100.000 2690 0 0 1 2690 799925951 799928640 0.000000e+00 4968.0
1 TraesCS3B01G568200 chr3B 87.310 591 72 1 980 1567 799983077 799982487 0.000000e+00 673.0
2 TraesCS3B01G568200 chr3B 88.798 491 47 4 986 1475 799860564 799860081 1.780000e-166 595.0
3 TraesCS3B01G568200 chr3B 88.430 484 43 8 165 638 815301989 815302469 3.000000e-159 571.0
4 TraesCS3B01G568200 chr3B 84.709 412 59 4 1158 1567 800000282 799999873 2.490000e-110 409.0
5 TraesCS3B01G568200 chr3B 88.417 259 26 3 1567 1821 799982433 799982175 2.600000e-80 309.0
6 TraesCS3B01G568200 chr3B 83.562 73 7 3 1850 1918 129277970 129277899 2.240000e-06 63.9
7 TraesCS3B01G568200 chr4A 91.739 811 40 8 1 784 657523302 657522492 0.000000e+00 1101.0
8 TraesCS3B01G568200 chr4A 90.523 612 48 8 183 787 668791505 668790897 0.000000e+00 800.0
9 TraesCS3B01G568200 chr4A 89.342 441 37 7 353 789 619720003 619720437 1.820000e-151 545.0
10 TraesCS3B01G568200 chr4A 100.000 30 0 0 168 197 668791533 668791504 3.740000e-04 56.5
11 TraesCS3B01G568200 chr5D 89.734 789 58 4 1925 2690 486768193 486767405 0.000000e+00 987.0
12 TraesCS3B01G568200 chr5D 89.227 789 62 5 1925 2690 363111379 363110591 0.000000e+00 965.0
13 TraesCS3B01G568200 chr4B 89.607 789 58 5 1925 2690 651996335 651997122 0.000000e+00 981.0
14 TraesCS3B01G568200 chr4B 88.086 789 71 5 1925 2690 654766501 654765713 0.000000e+00 915.0
15 TraesCS3B01G568200 chr4B 91.111 675 59 1 1925 2598 654647001 654646327 0.000000e+00 913.0
16 TraesCS3B01G568200 chr4B 91.111 675 58 2 1925 2598 654756184 654755511 0.000000e+00 913.0
17 TraesCS3B01G568200 chr4B 86.490 718 89 6 980 1690 662458898 662458182 0.000000e+00 782.0
18 TraesCS3B01G568200 chr4B 89.020 592 57 5 980 1564 662470984 662470394 0.000000e+00 726.0
19 TraesCS3B01G568200 chr4B 86.333 600 70 7 980 1567 662536710 662536111 0.000000e+00 643.0
20 TraesCS3B01G568200 chr4B 91.176 204 17 1 785 988 181704425 181704627 2.640000e-70 276.0
21 TraesCS3B01G568200 chr4B 88.293 205 23 1 785 988 194103500 194103704 7.440000e-61 244.0
22 TraesCS3B01G568200 chr6D 89.133 773 61 5 1941 2690 32065712 32064940 0.000000e+00 941.0
23 TraesCS3B01G568200 chr2A 91.704 675 53 2 1925 2598 596363367 596362695 0.000000e+00 933.0
24 TraesCS3B01G568200 chr2A 92.857 112 8 0 1 112 65705149 65705038 2.140000e-36 163.0
25 TraesCS3B01G568200 chr2A 93.333 105 7 0 8 112 65767723 65767619 3.590000e-34 156.0
26 TraesCS3B01G568200 chr5A 90.963 675 56 2 1925 2598 689659756 689660426 0.000000e+00 904.0
27 TraesCS3B01G568200 chr5A 90.323 589 55 2 980 1567 702632557 702631970 0.000000e+00 771.0
28 TraesCS3B01G568200 chr5A 84.457 341 50 3 980 1319 702605676 702605338 1.540000e-87 333.0
29 TraesCS3B01G568200 chr5A 81.277 235 32 4 1587 1821 702604084 702603862 2.130000e-41 180.0
30 TraesCS3B01G568200 chr3A 90.127 628 52 9 168 790 735411194 735410572 0.000000e+00 808.0
31 TraesCS3B01G568200 chr3A 91.879 431 32 1 357 784 721829204 721829634 1.380000e-167 599.0
32 TraesCS3B01G568200 chr3A 90.367 436 32 9 353 784 684770753 684771182 5.030000e-157 564.0
33 TraesCS3B01G568200 chr3A 92.105 228 16 1 138 365 721821915 721822140 1.200000e-83 320.0
34 TraesCS3B01G568200 chr3A 90.991 111 10 0 2 112 721821723 721821833 1.670000e-32 150.0
35 TraesCS3B01G568200 chr7A 90.080 625 52 9 165 784 672739581 672740200 0.000000e+00 802.0
36 TraesCS3B01G568200 chr7A 89.228 622 60 5 168 785 22388481 22387863 0.000000e+00 771.0
37 TraesCS3B01G568200 chr7A 89.796 441 34 8 353 788 652285997 652285563 3.030000e-154 555.0
38 TraesCS3B01G568200 chr7A 91.071 112 10 0 1 112 22388990 22388879 4.640000e-33 152.0
39 TraesCS3B01G568200 chr4D 89.983 589 57 2 980 1567 506340121 506339534 0.000000e+00 760.0
40 TraesCS3B01G568200 chr4D 82.171 258 27 13 1567 1816 506339480 506339234 1.260000e-48 204.0
41 TraesCS3B01G568200 chr1D 88.504 635 53 13 165 784 418336930 418337559 0.000000e+00 750.0
42 TraesCS3B01G568200 chrUn 84.038 520 68 10 980 1484 109029175 109028656 1.120000e-133 486.0
43 TraesCS3B01G568200 chrUn 83.600 500 73 5 980 1473 109048697 109048201 6.790000e-126 460.0
44 TraesCS3B01G568200 chr7B 91.753 291 24 0 165 455 749296386 749296676 3.220000e-109 405.0
45 TraesCS3B01G568200 chr7B 90.625 192 18 0 797 988 351112072 351111881 3.440000e-64 255.0
46 TraesCS3B01G568200 chr7B 89.163 203 22 0 786 988 499428748 499428546 1.240000e-63 254.0
47 TraesCS3B01G568200 chr7B 87.745 204 25 0 785 988 75083755 75083958 3.460000e-59 239.0
48 TraesCS3B01G568200 chr6A 90.830 229 21 0 138 366 68815454 68815682 9.350000e-80 307.0
49 TraesCS3B01G568200 chr6A 93.458 107 7 0 6 112 68815266 68815372 2.770000e-35 159.0
50 TraesCS3B01G568200 chr6B 90.148 203 20 0 786 988 405664036 405664238 5.710000e-67 265.0
51 TraesCS3B01G568200 chr6B 92.500 40 3 0 1879 1918 622647034 622646995 1.040000e-04 58.4
52 TraesCS3B01G568200 chr1B 89.806 206 21 0 785 990 411908564 411908769 5.710000e-67 265.0
53 TraesCS3B01G568200 chr1B 89.655 203 21 0 786 988 502149890 502149688 2.660000e-65 259.0
54 TraesCS3B01G568200 chr1B 89.231 195 21 0 794 988 515834466 515834272 7.440000e-61 244.0
55 TraesCS3B01G568200 chr7D 84.146 82 8 4 1850 1927 174797439 174797519 1.030000e-09 75.0
56 TraesCS3B01G568200 chr2B 84.722 72 7 3 1850 1918 207724080 207724150 4.810000e-08 69.4
57 TraesCS3B01G568200 chr2B 83.562 73 7 3 1850 1918 207739711 207739782 2.240000e-06 63.9
58 TraesCS3B01G568200 chr5B 84.722 72 6 4 1870 1937 473311301 473311371 1.730000e-07 67.6
59 TraesCS3B01G568200 chr5B 82.857 70 10 2 1850 1918 491577949 491578017 8.040000e-06 62.1
60 TraesCS3B01G568200 chr3D 81.395 86 10 5 1856 1937 106679188 106679105 6.220000e-07 65.8
61 TraesCS3B01G568200 chr3D 80.682 88 9 6 1855 1937 105832459 105832375 8.040000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G568200 chr3B 799925951 799928640 2689 False 4968.00 4968 100.0000 1 2690 1 chr3B.!!$F1 2689
1 TraesCS3B01G568200 chr3B 799982175 799983077 902 True 491.00 673 87.8635 980 1821 2 chr3B.!!$R4 841
2 TraesCS3B01G568200 chr4A 657522492 657523302 810 True 1101.00 1101 91.7390 1 784 1 chr4A.!!$R1 783
3 TraesCS3B01G568200 chr4A 668790897 668791533 636 True 428.25 800 95.2615 168 787 2 chr4A.!!$R2 619
4 TraesCS3B01G568200 chr5D 486767405 486768193 788 True 987.00 987 89.7340 1925 2690 1 chr5D.!!$R2 765
5 TraesCS3B01G568200 chr5D 363110591 363111379 788 True 965.00 965 89.2270 1925 2690 1 chr5D.!!$R1 765
6 TraesCS3B01G568200 chr4B 651996335 651997122 787 False 981.00 981 89.6070 1925 2690 1 chr4B.!!$F3 765
7 TraesCS3B01G568200 chr4B 654765713 654766501 788 True 915.00 915 88.0860 1925 2690 1 chr4B.!!$R3 765
8 TraesCS3B01G568200 chr4B 654646327 654647001 674 True 913.00 913 91.1110 1925 2598 1 chr4B.!!$R1 673
9 TraesCS3B01G568200 chr4B 654755511 654756184 673 True 913.00 913 91.1110 1925 2598 1 chr4B.!!$R2 673
10 TraesCS3B01G568200 chr4B 662458182 662458898 716 True 782.00 782 86.4900 980 1690 1 chr4B.!!$R4 710
11 TraesCS3B01G568200 chr4B 662470394 662470984 590 True 726.00 726 89.0200 980 1564 1 chr4B.!!$R5 584
12 TraesCS3B01G568200 chr4B 662536111 662536710 599 True 643.00 643 86.3330 980 1567 1 chr4B.!!$R6 587
13 TraesCS3B01G568200 chr6D 32064940 32065712 772 True 941.00 941 89.1330 1941 2690 1 chr6D.!!$R1 749
14 TraesCS3B01G568200 chr2A 596362695 596363367 672 True 933.00 933 91.7040 1925 2598 1 chr2A.!!$R3 673
15 TraesCS3B01G568200 chr5A 689659756 689660426 670 False 904.00 904 90.9630 1925 2598 1 chr5A.!!$F1 673
16 TraesCS3B01G568200 chr5A 702631970 702632557 587 True 771.00 771 90.3230 980 1567 1 chr5A.!!$R1 587
17 TraesCS3B01G568200 chr5A 702603862 702605676 1814 True 256.50 333 82.8670 980 1821 2 chr5A.!!$R2 841
18 TraesCS3B01G568200 chr3A 735410572 735411194 622 True 808.00 808 90.1270 168 790 1 chr3A.!!$R1 622
19 TraesCS3B01G568200 chr7A 672739581 672740200 619 False 802.00 802 90.0800 165 784 1 chr7A.!!$F1 619
20 TraesCS3B01G568200 chr7A 22387863 22388990 1127 True 461.50 771 90.1495 1 785 2 chr7A.!!$R2 784
21 TraesCS3B01G568200 chr4D 506339234 506340121 887 True 482.00 760 86.0770 980 1816 2 chr4D.!!$R1 836
22 TraesCS3B01G568200 chr1D 418336930 418337559 629 False 750.00 750 88.5040 165 784 1 chr1D.!!$F1 619
23 TraesCS3B01G568200 chrUn 109028656 109029175 519 True 486.00 486 84.0380 980 1484 1 chrUn.!!$R1 504

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
896 1285 0.029834 CCAGCAGCCGAATACAATGC 59.97 55.0 0.0 0.0 37.15 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2440 3878 0.036022 GTTCTTCAGTGGCTGCTCCT 59.964 55.0 0.0 0.0 35.26 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 115 7.954906 GTGATTAACGGATCAAATTTGAGTC 57.045 36.000 24.17 19.50 41.08 3.36
116 117 6.370442 TGATTAACGGATCAAATTTGAGTCGT 59.630 34.615 29.54 29.54 45.03 4.34
135 422 0.793861 TGCTTGGCGACGTGATTAAC 59.206 50.000 0.00 0.00 0.00 2.01
236 593 8.559536 CAATCCAAACAAAGATAGCACGTATAT 58.440 33.333 0.00 0.00 0.00 0.86
313 672 5.300792 ACTTGATAAAAGGAAACGGAAGCAA 59.699 36.000 0.00 0.00 0.00 3.91
326 685 2.200170 GAAGCAACGGATGGGTGCAC 62.200 60.000 8.80 8.80 0.00 4.57
339 698 1.531149 GGGTGCACGATTATCGGATTG 59.469 52.381 19.05 9.20 45.59 2.67
441 800 5.172205 GGCACTCTCGTTCTTTCTATTCTT 58.828 41.667 0.00 0.00 0.00 2.52
527 890 3.496692 CCCCTGTCTCTGTGTCAATTGAA 60.497 47.826 10.35 0.00 0.00 2.69
557 921 1.526986 CGTGATTCCGATGAACAACGC 60.527 52.381 0.00 0.00 36.48 4.84
631 1018 2.048127 GCTTCGGTCCGCTCAGTT 60.048 61.111 6.34 0.00 0.00 3.16
790 1179 4.459089 GTCCAGCCTGAGTCCCGC 62.459 72.222 0.00 0.00 0.00 6.13
796 1185 3.636231 CCTGAGTCCCGCCCAACA 61.636 66.667 0.00 0.00 0.00 3.33
797 1186 2.358737 CTGAGTCCCGCCCAACAC 60.359 66.667 0.00 0.00 0.00 3.32
798 1187 3.901797 CTGAGTCCCGCCCAACACC 62.902 68.421 0.00 0.00 0.00 4.16
799 1188 3.637273 GAGTCCCGCCCAACACCT 61.637 66.667 0.00 0.00 0.00 4.00
800 1189 3.175710 AGTCCCGCCCAACACCTT 61.176 61.111 0.00 0.00 0.00 3.50
801 1190 2.203437 GTCCCGCCCAACACCTTT 60.203 61.111 0.00 0.00 0.00 3.11
802 1191 2.203422 TCCCGCCCAACACCTTTG 60.203 61.111 0.00 0.00 0.00 2.77
803 1192 2.520741 CCCGCCCAACACCTTTGT 60.521 61.111 0.00 0.00 37.67 2.83
830 1219 3.180891 GCTCTTTAAGCCATCCGTAGT 57.819 47.619 0.00 0.00 45.92 2.73
831 1220 4.317671 GCTCTTTAAGCCATCCGTAGTA 57.682 45.455 0.00 0.00 45.92 1.82
832 1221 4.884247 GCTCTTTAAGCCATCCGTAGTAT 58.116 43.478 0.00 0.00 45.92 2.12
833 1222 4.686554 GCTCTTTAAGCCATCCGTAGTATG 59.313 45.833 0.00 0.00 45.92 2.39
835 1224 4.652421 TCTTTAAGCCATCCGTAGTATGGT 59.348 41.667 8.30 0.00 46.47 3.55
836 1225 5.834742 TCTTTAAGCCATCCGTAGTATGGTA 59.165 40.000 8.30 0.00 46.47 3.25
837 1226 5.717078 TTAAGCCATCCGTAGTATGGTAG 57.283 43.478 8.30 2.64 46.47 3.18
838 1227 2.526432 AGCCATCCGTAGTATGGTAGG 58.474 52.381 8.30 11.73 46.47 3.18
839 1228 2.109480 AGCCATCCGTAGTATGGTAGGA 59.891 50.000 19.61 5.34 46.47 2.94
840 1229 3.097614 GCCATCCGTAGTATGGTAGGAT 58.902 50.000 19.61 7.00 46.47 3.24
841 1230 3.119101 GCCATCCGTAGTATGGTAGGATG 60.119 52.174 19.61 13.99 46.47 3.51
842 1231 4.341487 CCATCCGTAGTATGGTAGGATGA 58.659 47.826 20.49 0.00 39.34 2.92
843 1232 4.399618 CCATCCGTAGTATGGTAGGATGAG 59.600 50.000 20.49 9.57 39.34 2.90
844 1233 4.987963 TCCGTAGTATGGTAGGATGAGA 57.012 45.455 8.30 0.00 0.00 3.27
845 1234 4.907809 TCCGTAGTATGGTAGGATGAGAG 58.092 47.826 8.30 0.00 0.00 3.20
846 1235 3.440872 CCGTAGTATGGTAGGATGAGAGC 59.559 52.174 0.00 0.00 0.00 4.09
847 1236 4.072839 CGTAGTATGGTAGGATGAGAGCA 58.927 47.826 0.00 0.00 0.00 4.26
848 1237 4.155099 CGTAGTATGGTAGGATGAGAGCAG 59.845 50.000 0.00 0.00 0.00 4.24
849 1238 4.461450 AGTATGGTAGGATGAGAGCAGA 57.539 45.455 0.00 0.00 0.00 4.26
850 1239 4.406456 AGTATGGTAGGATGAGAGCAGAG 58.594 47.826 0.00 0.00 0.00 3.35
851 1240 3.609256 ATGGTAGGATGAGAGCAGAGA 57.391 47.619 0.00 0.00 0.00 3.10
852 1241 3.388552 TGGTAGGATGAGAGCAGAGAA 57.611 47.619 0.00 0.00 0.00 2.87
853 1242 3.921104 TGGTAGGATGAGAGCAGAGAAT 58.079 45.455 0.00 0.00 0.00 2.40
854 1243 3.894427 TGGTAGGATGAGAGCAGAGAATC 59.106 47.826 0.00 0.00 0.00 2.52
869 1258 3.553904 GAGAATCTAGTACGGACCTGGT 58.446 50.000 0.00 0.00 0.00 4.00
870 1259 3.553904 AGAATCTAGTACGGACCTGGTC 58.446 50.000 18.65 18.65 0.00 4.02
871 1260 3.053842 AGAATCTAGTACGGACCTGGTCA 60.054 47.826 26.94 5.18 33.68 4.02
872 1261 3.596940 ATCTAGTACGGACCTGGTCAT 57.403 47.619 26.94 17.00 33.68 3.06
873 1262 4.719026 ATCTAGTACGGACCTGGTCATA 57.281 45.455 26.94 16.01 33.68 2.15
874 1263 3.813443 TCTAGTACGGACCTGGTCATAC 58.187 50.000 26.94 24.73 33.68 2.39
875 1264 1.772836 AGTACGGACCTGGTCATACC 58.227 55.000 26.94 10.50 39.22 2.73
876 1265 0.749049 GTACGGACCTGGTCATACCC 59.251 60.000 26.94 10.12 37.50 3.69
877 1266 0.397535 TACGGACCTGGTCATACCCC 60.398 60.000 26.94 9.39 37.50 4.95
878 1267 2.440817 CGGACCTGGTCATACCCCC 61.441 68.421 26.94 8.67 37.50 5.40
879 1268 1.307517 GGACCTGGTCATACCCCCA 60.308 63.158 26.94 0.00 37.50 4.96
880 1269 1.345715 GGACCTGGTCATACCCCCAG 61.346 65.000 26.94 0.00 46.43 4.45
881 1270 1.984288 GACCTGGTCATACCCCCAGC 61.984 65.000 21.70 0.00 45.68 4.85
882 1271 2.000701 CCTGGTCATACCCCCAGCA 61.001 63.158 0.00 0.00 45.68 4.41
883 1272 1.528824 CTGGTCATACCCCCAGCAG 59.471 63.158 0.00 0.00 41.65 4.24
884 1273 2.193248 GGTCATACCCCCAGCAGC 59.807 66.667 0.00 0.00 30.04 5.25
885 1274 2.193248 GTCATACCCCCAGCAGCC 59.807 66.667 0.00 0.00 0.00 4.85
886 1275 3.479203 TCATACCCCCAGCAGCCG 61.479 66.667 0.00 0.00 0.00 5.52
887 1276 3.479203 CATACCCCCAGCAGCCGA 61.479 66.667 0.00 0.00 0.00 5.54
888 1277 2.690881 ATACCCCCAGCAGCCGAA 60.691 61.111 0.00 0.00 0.00 4.30
889 1278 2.078665 ATACCCCCAGCAGCCGAAT 61.079 57.895 0.00 0.00 0.00 3.34
890 1279 0.766674 ATACCCCCAGCAGCCGAATA 60.767 55.000 0.00 0.00 0.00 1.75
891 1280 1.692173 TACCCCCAGCAGCCGAATAC 61.692 60.000 0.00 0.00 0.00 1.89
892 1281 2.589540 CCCCAGCAGCCGAATACA 59.410 61.111 0.00 0.00 0.00 2.29
893 1282 1.077787 CCCCAGCAGCCGAATACAA 60.078 57.895 0.00 0.00 0.00 2.41
894 1283 0.466189 CCCCAGCAGCCGAATACAAT 60.466 55.000 0.00 0.00 0.00 2.71
895 1284 0.664761 CCCAGCAGCCGAATACAATG 59.335 55.000 0.00 0.00 0.00 2.82
896 1285 0.029834 CCAGCAGCCGAATACAATGC 59.970 55.000 0.00 0.00 37.15 3.56
897 1286 0.734309 CAGCAGCCGAATACAATGCA 59.266 50.000 0.00 0.00 39.34 3.96
898 1287 1.019673 AGCAGCCGAATACAATGCAG 58.980 50.000 0.00 0.00 39.34 4.41
899 1288 1.016627 GCAGCCGAATACAATGCAGA 58.983 50.000 0.00 0.00 36.88 4.26
900 1289 1.605710 GCAGCCGAATACAATGCAGAT 59.394 47.619 0.00 0.00 36.88 2.90
901 1290 2.807967 GCAGCCGAATACAATGCAGATA 59.192 45.455 0.00 0.00 36.88 1.98
902 1291 3.364366 GCAGCCGAATACAATGCAGATAC 60.364 47.826 0.00 0.00 36.88 2.24
903 1292 3.187227 CAGCCGAATACAATGCAGATACC 59.813 47.826 0.00 0.00 0.00 2.73
904 1293 2.157668 GCCGAATACAATGCAGATACCG 59.842 50.000 0.00 0.00 0.00 4.02
905 1294 3.390135 CCGAATACAATGCAGATACCGT 58.610 45.455 0.00 0.00 0.00 4.83
906 1295 3.807622 CCGAATACAATGCAGATACCGTT 59.192 43.478 0.00 0.00 0.00 4.44
907 1296 4.318760 CCGAATACAATGCAGATACCGTTG 60.319 45.833 0.00 0.00 35.77 4.10
908 1297 4.318760 CGAATACAATGCAGATACCGTTGG 60.319 45.833 0.00 0.00 34.36 3.77
909 1298 1.750193 ACAATGCAGATACCGTTGGG 58.250 50.000 0.00 0.00 34.36 4.12
910 1299 1.024271 CAATGCAGATACCGTTGGGG 58.976 55.000 0.00 0.00 43.62 4.96
911 1300 0.106719 AATGCAGATACCGTTGGGGG 60.107 55.000 0.00 0.00 41.60 5.40
912 1301 1.279025 ATGCAGATACCGTTGGGGGT 61.279 55.000 0.00 0.00 44.23 4.95
913 1302 1.301954 GCAGATACCGTTGGGGGTT 59.698 57.895 0.00 0.00 41.56 4.11
914 1303 0.746923 GCAGATACCGTTGGGGGTTC 60.747 60.000 0.00 0.00 41.56 3.62
915 1304 0.461339 CAGATACCGTTGGGGGTTCG 60.461 60.000 0.00 0.00 41.56 3.95
917 1306 1.613035 ATACCGTTGGGGGTTCGGA 60.613 57.895 9.75 0.00 46.05 4.55
918 1307 1.902765 ATACCGTTGGGGGTTCGGAC 61.903 60.000 9.75 0.00 46.05 4.79
919 1308 3.943691 CCGTTGGGGGTTCGGACA 61.944 66.667 0.00 0.00 46.05 4.02
920 1309 2.349755 CGTTGGGGGTTCGGACAT 59.650 61.111 0.00 0.00 0.00 3.06
921 1310 1.597989 CGTTGGGGGTTCGGACATA 59.402 57.895 0.00 0.00 0.00 2.29
922 1311 0.461339 CGTTGGGGGTTCGGACATAG 60.461 60.000 0.00 0.00 0.00 2.23
923 1312 0.906775 GTTGGGGGTTCGGACATAGA 59.093 55.000 0.00 0.00 0.00 1.98
924 1313 1.279846 GTTGGGGGTTCGGACATAGAA 59.720 52.381 0.00 0.00 0.00 2.10
925 1314 1.659022 TGGGGGTTCGGACATAGAAA 58.341 50.000 0.00 0.00 0.00 2.52
926 1315 2.201830 TGGGGGTTCGGACATAGAAAT 58.798 47.619 0.00 0.00 0.00 2.17
927 1316 3.386063 TGGGGGTTCGGACATAGAAATA 58.614 45.455 0.00 0.00 0.00 1.40
928 1317 3.781407 TGGGGGTTCGGACATAGAAATAA 59.219 43.478 0.00 0.00 0.00 1.40
929 1318 4.132336 GGGGGTTCGGACATAGAAATAAC 58.868 47.826 0.00 0.00 0.00 1.89
930 1319 4.384427 GGGGGTTCGGACATAGAAATAACA 60.384 45.833 0.00 0.00 0.00 2.41
931 1320 4.573607 GGGGTTCGGACATAGAAATAACAC 59.426 45.833 0.00 0.00 0.00 3.32
932 1321 4.573607 GGGTTCGGACATAGAAATAACACC 59.426 45.833 0.00 0.00 0.00 4.16
933 1322 4.573607 GGTTCGGACATAGAAATAACACCC 59.426 45.833 0.00 0.00 0.00 4.61
934 1323 5.425630 GTTCGGACATAGAAATAACACCCT 58.574 41.667 0.00 0.00 0.00 4.34
935 1324 5.272283 TCGGACATAGAAATAACACCCTC 57.728 43.478 0.00 0.00 0.00 4.30
936 1325 4.960469 TCGGACATAGAAATAACACCCTCT 59.040 41.667 0.00 0.00 0.00 3.69
937 1326 5.050490 CGGACATAGAAATAACACCCTCTG 58.950 45.833 0.00 0.00 0.00 3.35
938 1327 4.816925 GGACATAGAAATAACACCCTCTGC 59.183 45.833 0.00 0.00 0.00 4.26
939 1328 5.396884 GGACATAGAAATAACACCCTCTGCT 60.397 44.000 0.00 0.00 0.00 4.24
940 1329 5.675538 ACATAGAAATAACACCCTCTGCTC 58.324 41.667 0.00 0.00 0.00 4.26
941 1330 5.189736 ACATAGAAATAACACCCTCTGCTCA 59.810 40.000 0.00 0.00 0.00 4.26
942 1331 3.944087 AGAAATAACACCCTCTGCTCAC 58.056 45.455 0.00 0.00 0.00 3.51
943 1332 2.386661 AATAACACCCTCTGCTCACG 57.613 50.000 0.00 0.00 0.00 4.35
944 1333 1.557099 ATAACACCCTCTGCTCACGA 58.443 50.000 0.00 0.00 0.00 4.35
945 1334 0.888619 TAACACCCTCTGCTCACGAG 59.111 55.000 0.00 0.00 0.00 4.18
946 1335 0.827925 AACACCCTCTGCTCACGAGA 60.828 55.000 0.00 0.00 0.00 4.04
947 1336 0.613292 ACACCCTCTGCTCACGAGAT 60.613 55.000 0.00 0.00 0.00 2.75
948 1337 0.534412 CACCCTCTGCTCACGAGATT 59.466 55.000 0.00 0.00 0.00 2.40
949 1338 1.751351 CACCCTCTGCTCACGAGATTA 59.249 52.381 0.00 0.00 0.00 1.75
950 1339 2.363680 CACCCTCTGCTCACGAGATTAT 59.636 50.000 0.00 0.00 0.00 1.28
951 1340 2.363680 ACCCTCTGCTCACGAGATTATG 59.636 50.000 0.00 0.00 0.00 1.90
952 1341 2.288702 CCCTCTGCTCACGAGATTATGG 60.289 54.545 0.00 0.00 0.00 2.74
953 1342 2.402305 CTCTGCTCACGAGATTATGGC 58.598 52.381 0.00 0.00 0.00 4.40
954 1343 1.069204 TCTGCTCACGAGATTATGGCC 59.931 52.381 0.00 0.00 0.00 5.36
955 1344 0.249447 TGCTCACGAGATTATGGCCG 60.249 55.000 0.00 0.00 0.00 6.13
956 1345 0.249489 GCTCACGAGATTATGGCCGT 60.249 55.000 1.35 1.35 35.46 5.68
957 1346 1.806623 GCTCACGAGATTATGGCCGTT 60.807 52.381 0.77 0.00 32.50 4.44
958 1347 2.545113 GCTCACGAGATTATGGCCGTTA 60.545 50.000 0.77 0.00 32.50 3.18
959 1348 3.861131 GCTCACGAGATTATGGCCGTTAT 60.861 47.826 0.77 0.00 32.50 1.89
960 1349 3.649073 TCACGAGATTATGGCCGTTATG 58.351 45.455 0.77 0.00 32.50 1.90
961 1350 2.736721 CACGAGATTATGGCCGTTATGG 59.263 50.000 0.77 0.00 42.50 2.74
971 1360 3.006672 CCGTTATGGCTCCATGGAC 57.993 57.895 11.44 8.06 37.82 4.02
972 1361 0.535102 CCGTTATGGCTCCATGGACC 60.535 60.000 11.44 17.30 37.82 4.46
973 1362 0.880278 CGTTATGGCTCCATGGACCG 60.880 60.000 11.44 3.05 37.82 4.79
974 1363 0.468226 GTTATGGCTCCATGGACCGA 59.532 55.000 11.44 1.47 37.82 4.69
975 1364 1.134220 GTTATGGCTCCATGGACCGAA 60.134 52.381 11.44 12.17 37.82 4.30
976 1365 0.468226 TATGGCTCCATGGACCGAAC 59.532 55.000 11.44 0.00 37.82 3.95
977 1366 2.124695 GGCTCCATGGACCGAACC 60.125 66.667 11.44 3.80 0.00 3.62
978 1367 2.124695 GCTCCATGGACCGAACCC 60.125 66.667 11.44 0.00 0.00 4.11
982 1371 1.077716 CCATGGACCGAACCCTTCC 60.078 63.158 5.56 0.00 0.00 3.46
1019 1408 3.861797 GGTGGATGACCCGGCGAT 61.862 66.667 9.30 0.00 39.10 4.58
1020 1409 2.588877 GTGGATGACCCGGCGATG 60.589 66.667 9.30 0.68 37.93 3.84
1061 1450 3.360340 AGCCAGCAACAGCTTCGC 61.360 61.111 0.00 0.00 35.22 4.70
1066 1455 3.345808 GCAACAGCTTCGCCGTCA 61.346 61.111 0.00 0.00 0.00 4.35
1139 1528 0.321996 AACTTCTCCAGCTTCGTCCC 59.678 55.000 0.00 0.00 0.00 4.46
1144 1533 4.101448 CCAGCTTCGTCCCCCAGG 62.101 72.222 0.00 0.00 0.00 4.45
1202 1591 4.736896 GGAGTTCGCGGACGCCTT 62.737 66.667 30.55 4.67 39.84 4.35
1220 1609 3.854669 CTTCCTCCGCGGCCAGAT 61.855 66.667 23.51 0.00 0.00 2.90
1230 1619 2.434843 CGGCCAGATGCACCTCCTA 61.435 63.158 2.24 0.00 43.89 2.94
1239 1628 3.043999 GCACCTCCTACCCCGCATT 62.044 63.158 0.00 0.00 0.00 3.56
1464 2417 2.753043 GGAGACCCCGACGTGCTA 60.753 66.667 0.00 0.00 0.00 3.49
1496 2449 1.648720 GCAACTTGAGCAGCAACGA 59.351 52.632 0.00 0.00 31.96 3.85
1671 3086 4.825252 CCCCCGTACGCTTTCCCG 62.825 72.222 10.49 0.00 0.00 5.14
1699 3115 1.674817 CCGGCTACTGATTTGGTTCGT 60.675 52.381 0.00 0.00 0.00 3.85
1707 3123 4.969484 ACTGATTTGGTTCGTTTAGAGGT 58.031 39.130 0.00 0.00 0.00 3.85
1710 3138 5.127491 TGATTTGGTTCGTTTAGAGGTTGT 58.873 37.500 0.00 0.00 0.00 3.32
1713 3141 5.488645 TTGGTTCGTTTAGAGGTTGTTTC 57.511 39.130 0.00 0.00 0.00 2.78
1714 3142 4.515361 TGGTTCGTTTAGAGGTTGTTTCA 58.485 39.130 0.00 0.00 0.00 2.69
1715 3143 4.333372 TGGTTCGTTTAGAGGTTGTTTCAC 59.667 41.667 0.00 0.00 0.00 3.18
1716 3144 4.260907 GGTTCGTTTAGAGGTTGTTTCACC 60.261 45.833 0.00 0.00 37.04 4.02
1722 3150 3.586843 AGGTTGTTTCACCTGCACA 57.413 47.368 0.00 0.00 46.22 4.57
1723 3151 2.071778 AGGTTGTTTCACCTGCACAT 57.928 45.000 0.00 0.00 46.22 3.21
1724 3152 3.222173 AGGTTGTTTCACCTGCACATA 57.778 42.857 0.00 0.00 46.22 2.29
1764 3199 5.485209 AGGAGGTTTGTTCTTTAGACGAT 57.515 39.130 0.00 0.00 0.00 3.73
1775 3210 3.952323 TCTTTAGACGATGTGGTAGGAGG 59.048 47.826 0.00 0.00 0.00 4.30
1781 3216 2.904434 ACGATGTGGTAGGAGGACTTTT 59.096 45.455 0.00 0.00 0.00 2.27
1792 3227 4.145052 AGGAGGACTTTTTGGCAAACTAG 58.855 43.478 13.10 14.82 0.00 2.57
1808 3243 5.122396 GCAAACTAGTATGTGAACAAGGGAG 59.878 44.000 0.00 0.00 0.00 4.30
1821 3256 2.969950 ACAAGGGAGGCTACGCAATATA 59.030 45.455 0.00 0.00 0.00 0.86
1822 3257 3.389983 ACAAGGGAGGCTACGCAATATAA 59.610 43.478 0.00 0.00 0.00 0.98
1823 3258 4.141574 ACAAGGGAGGCTACGCAATATAAA 60.142 41.667 0.00 0.00 0.00 1.40
1824 3259 4.004196 AGGGAGGCTACGCAATATAAAC 57.996 45.455 0.00 0.00 0.00 2.01
1825 3260 3.389983 AGGGAGGCTACGCAATATAAACA 59.610 43.478 0.00 0.00 0.00 2.83
1826 3261 4.131596 GGGAGGCTACGCAATATAAACAA 58.868 43.478 0.00 0.00 0.00 2.83
1827 3262 4.213482 GGGAGGCTACGCAATATAAACAAG 59.787 45.833 0.00 0.00 0.00 3.16
1828 3263 4.213482 GGAGGCTACGCAATATAAACAAGG 59.787 45.833 0.00 0.00 0.00 3.61
1829 3264 4.134563 AGGCTACGCAATATAAACAAGGG 58.865 43.478 0.00 0.00 0.00 3.95
1830 3265 4.131596 GGCTACGCAATATAAACAAGGGA 58.868 43.478 0.00 0.00 0.00 4.20
1831 3266 4.577283 GGCTACGCAATATAAACAAGGGAA 59.423 41.667 0.00 0.00 0.00 3.97
1832 3267 5.277828 GGCTACGCAATATAAACAAGGGAAG 60.278 44.000 0.00 0.00 0.00 3.46
1833 3268 5.277828 GCTACGCAATATAAACAAGGGAAGG 60.278 44.000 0.00 0.00 0.00 3.46
1834 3269 4.595986 ACGCAATATAAACAAGGGAAGGT 58.404 39.130 0.00 0.00 0.00 3.50
1835 3270 5.747342 ACGCAATATAAACAAGGGAAGGTA 58.253 37.500 0.00 0.00 0.00 3.08
1836 3271 5.587443 ACGCAATATAAACAAGGGAAGGTAC 59.413 40.000 0.00 0.00 0.00 3.34
1837 3272 5.587043 CGCAATATAAACAAGGGAAGGTACA 59.413 40.000 0.00 0.00 0.00 2.90
1838 3273 6.094325 CGCAATATAAACAAGGGAAGGTACAA 59.906 38.462 0.00 0.00 0.00 2.41
1839 3274 7.362229 CGCAATATAAACAAGGGAAGGTACAAA 60.362 37.037 0.00 0.00 0.00 2.83
1840 3275 8.308207 GCAATATAAACAAGGGAAGGTACAAAA 58.692 33.333 0.00 0.00 0.00 2.44
1845 3280 5.914898 ACAAGGGAAGGTACAAAATATGC 57.085 39.130 0.00 0.00 0.00 3.14
1846 3281 4.398044 ACAAGGGAAGGTACAAAATATGCG 59.602 41.667 0.00 0.00 0.00 4.73
1847 3282 3.551846 AGGGAAGGTACAAAATATGCGG 58.448 45.455 0.00 0.00 0.00 5.69
1848 3283 3.053917 AGGGAAGGTACAAAATATGCGGT 60.054 43.478 0.00 0.00 0.00 5.68
1849 3284 4.164604 AGGGAAGGTACAAAATATGCGGTA 59.835 41.667 0.00 0.00 0.00 4.02
1850 3285 4.883006 GGGAAGGTACAAAATATGCGGTAA 59.117 41.667 0.00 0.00 0.00 2.85
1851 3286 5.533528 GGGAAGGTACAAAATATGCGGTAAT 59.466 40.000 0.00 0.00 0.00 1.89
1852 3287 6.040054 GGGAAGGTACAAAATATGCGGTAATT 59.960 38.462 0.00 0.00 0.00 1.40
1853 3288 7.417003 GGGAAGGTACAAAATATGCGGTAATTT 60.417 37.037 0.00 0.00 0.00 1.82
1854 3289 8.623030 GGAAGGTACAAAATATGCGGTAATTTA 58.377 33.333 0.00 0.00 0.00 1.40
1869 3304 9.239002 TGCGGTAATTTATACATTTTATGTTGC 57.761 29.630 0.00 0.00 41.63 4.17
1870 3305 9.239002 GCGGTAATTTATACATTTTATGTTGCA 57.761 29.630 0.00 0.00 41.63 4.08
1903 3338 5.376756 AAAAGGGTACAAGTACACAAGGA 57.623 39.130 14.45 0.00 41.77 3.36
1904 3339 5.578157 AAAGGGTACAAGTACACAAGGAT 57.422 39.130 14.45 0.00 41.77 3.24
1905 3340 4.553330 AGGGTACAAGTACACAAGGATG 57.447 45.455 14.45 0.00 41.77 3.51
1906 3341 3.908103 AGGGTACAAGTACACAAGGATGT 59.092 43.478 14.45 0.00 41.77 3.06
1921 3356 7.994425 ACAAGGATGTGATGTGTATGTAAAA 57.006 32.000 0.00 0.00 38.69 1.52
1922 3357 8.402798 ACAAGGATGTGATGTGTATGTAAAAA 57.597 30.769 0.00 0.00 38.69 1.94
1923 3358 8.296713 ACAAGGATGTGATGTGTATGTAAAAAC 58.703 33.333 0.00 0.00 38.69 2.43
1992 3427 2.818751 ATCAACCGGCCAGGAATTAA 57.181 45.000 18.74 2.21 45.00 1.40
1994 3429 2.442413 TCAACCGGCCAGGAATTAAAG 58.558 47.619 18.74 2.79 45.00 1.85
2058 3493 5.163237 ACCCTAAGAAGCTTACAACTCAACA 60.163 40.000 0.00 0.00 0.00 3.33
2110 3547 3.927555 GCCCAAGCTAGTACACACA 57.072 52.632 0.00 0.00 35.50 3.72
2128 3565 2.050985 GCAGACCGCAGCAAACAC 60.051 61.111 0.00 0.00 41.79 3.32
2368 3806 1.968540 GCACAGAGCACAACCTCCC 60.969 63.158 0.00 0.00 44.79 4.30
2397 3835 1.417517 AGCACACCTCATCTGACACAA 59.582 47.619 0.00 0.00 0.00 3.33
2400 3838 1.270305 ACACCTCATCTGACACAACGG 60.270 52.381 0.00 0.00 0.00 4.44
2404 3842 2.029288 CATCTGACACAACGGCGCT 61.029 57.895 6.90 0.00 0.00 5.92
2440 3878 0.684805 AAACAACGGGAAAGCCACCA 60.685 50.000 0.00 0.00 35.15 4.17
2520 3958 2.749044 AAGAGTCGTCGGCCGCTA 60.749 61.111 23.51 0.00 36.19 4.26
2540 3978 3.110178 GAGAAACACCGGGCGTCG 61.110 66.667 6.32 0.00 38.88 5.12
2573 4012 1.745489 GTTGCTACTGCCGGGAAGG 60.745 63.158 7.04 0.00 44.97 3.46
2620 4081 3.216292 GCCAAACACGCCACCACT 61.216 61.111 0.00 0.00 0.00 4.00
2651 4112 1.308216 CCTTGAGGGGAGTGGGGAT 60.308 63.158 0.00 0.00 0.00 3.85
2657 4118 0.266152 AGGGGAGTGGGGATAGACTG 59.734 60.000 0.00 0.00 0.00 3.51
2674 4135 1.300971 CTGCCATGTGAACCAGACCG 61.301 60.000 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.900122 ACAATACTTGCATGCGTCAC 57.100 45.000 14.09 0.00 0.00 3.67
113 114 3.567478 ATCACGTCGCCAAGCACGA 62.567 57.895 15.02 0.00 36.88 4.35
114 115 1.348538 TAATCACGTCGCCAAGCACG 61.349 55.000 9.06 9.06 38.35 5.34
116 117 0.793861 GTTAATCACGTCGCCAAGCA 59.206 50.000 0.00 0.00 0.00 3.91
236 593 5.105269 TCCTACGTGACATGCTTACCAAATA 60.105 40.000 0.00 0.00 0.00 1.40
313 672 0.468226 ATAATCGTGCACCCATCCGT 59.532 50.000 12.15 0.00 0.00 4.69
326 685 5.450171 ACTAACGAGACAATCCGATAATCG 58.550 41.667 0.00 0.00 40.07 3.34
339 698 5.027099 CCTTTTACTAGCGACTAACGAGAC 58.973 45.833 0.00 0.00 45.77 3.36
441 800 7.411486 TTTTCCCTTGTATTCAGTCAAACAA 57.589 32.000 0.00 0.00 0.00 2.83
527 890 4.278419 TCATCGGAATCACGTACTCATCAT 59.722 41.667 0.00 0.00 34.94 2.45
595 979 1.226746 CTTCAAGGCCGTTCTTCGTT 58.773 50.000 0.00 0.00 37.94 3.85
612 999 2.100879 AACTGAGCGGACCGAAGCTT 62.101 55.000 20.50 0.00 44.69 3.74
682 1069 1.874872 GATTTTGTTCGGTCCGGTTCA 59.125 47.619 12.29 5.69 0.00 3.18
770 1159 4.459089 GGACTCAGGCTGGACGGC 62.459 72.222 15.73 5.67 38.75 5.68
790 1179 2.888834 CTTTCCACAAAGGTGTTGGG 57.111 50.000 0.00 0.00 43.71 4.12
798 1187 4.550422 GCTTAAAGAGCCTTTCCACAAAG 58.450 43.478 3.80 4.05 46.01 2.77
799 1188 4.584327 GCTTAAAGAGCCTTTCCACAAA 57.416 40.909 3.80 0.00 46.01 2.83
810 1199 8.629844 ACCATACTACGGATGGCTTAAAGAGC 62.630 46.154 5.01 0.00 46.76 4.09
811 1200 5.221461 ACCATACTACGGATGGCTTAAAGAG 60.221 44.000 5.01 0.00 46.76 2.85
812 1201 4.652421 ACCATACTACGGATGGCTTAAAGA 59.348 41.667 5.01 0.00 46.76 2.52
813 1202 4.957296 ACCATACTACGGATGGCTTAAAG 58.043 43.478 5.01 0.00 46.76 1.85
814 1203 5.011329 CCTACCATACTACGGATGGCTTAAA 59.989 44.000 5.01 0.00 46.76 1.52
815 1204 4.525487 CCTACCATACTACGGATGGCTTAA 59.475 45.833 5.01 0.00 46.76 1.85
816 1205 4.084287 CCTACCATACTACGGATGGCTTA 58.916 47.826 5.01 0.00 46.76 3.09
817 1206 2.897969 CCTACCATACTACGGATGGCTT 59.102 50.000 5.01 0.00 46.76 4.35
818 1207 2.109480 TCCTACCATACTACGGATGGCT 59.891 50.000 5.01 0.00 46.76 4.75
819 1208 2.522185 TCCTACCATACTACGGATGGC 58.478 52.381 5.01 0.00 46.76 4.40
820 1209 4.341487 TCATCCTACCATACTACGGATGG 58.659 47.826 14.51 3.55 46.94 3.51
822 1211 5.502079 CTCTCATCCTACCATACTACGGAT 58.498 45.833 0.00 0.00 34.94 4.18
823 1212 4.806625 GCTCTCATCCTACCATACTACGGA 60.807 50.000 0.00 0.00 0.00 4.69
824 1213 3.440872 GCTCTCATCCTACCATACTACGG 59.559 52.174 0.00 0.00 0.00 4.02
825 1214 4.072839 TGCTCTCATCCTACCATACTACG 58.927 47.826 0.00 0.00 0.00 3.51
826 1215 5.317808 TCTGCTCTCATCCTACCATACTAC 58.682 45.833 0.00 0.00 0.00 2.73
827 1216 5.310857 TCTCTGCTCTCATCCTACCATACTA 59.689 44.000 0.00 0.00 0.00 1.82
828 1217 4.105537 TCTCTGCTCTCATCCTACCATACT 59.894 45.833 0.00 0.00 0.00 2.12
829 1218 4.402829 TCTCTGCTCTCATCCTACCATAC 58.597 47.826 0.00 0.00 0.00 2.39
830 1219 4.731313 TCTCTGCTCTCATCCTACCATA 57.269 45.455 0.00 0.00 0.00 2.74
831 1220 3.609256 TCTCTGCTCTCATCCTACCAT 57.391 47.619 0.00 0.00 0.00 3.55
832 1221 3.388552 TTCTCTGCTCTCATCCTACCA 57.611 47.619 0.00 0.00 0.00 3.25
833 1222 4.151883 AGATTCTCTGCTCTCATCCTACC 58.848 47.826 0.00 0.00 0.00 3.18
834 1223 6.003950 ACTAGATTCTCTGCTCTCATCCTAC 58.996 44.000 0.00 0.00 0.00 3.18
835 1224 6.199557 ACTAGATTCTCTGCTCTCATCCTA 57.800 41.667 0.00 0.00 0.00 2.94
836 1225 5.065613 ACTAGATTCTCTGCTCTCATCCT 57.934 43.478 0.00 0.00 0.00 3.24
837 1226 5.106712 CGTACTAGATTCTCTGCTCTCATCC 60.107 48.000 0.00 0.00 0.00 3.51
838 1227 5.106712 CCGTACTAGATTCTCTGCTCTCATC 60.107 48.000 0.00 0.00 0.00 2.92
839 1228 4.759693 CCGTACTAGATTCTCTGCTCTCAT 59.240 45.833 0.00 0.00 0.00 2.90
840 1229 4.130857 CCGTACTAGATTCTCTGCTCTCA 58.869 47.826 0.00 0.00 0.00 3.27
841 1230 4.212636 GTCCGTACTAGATTCTCTGCTCTC 59.787 50.000 0.00 0.00 0.00 3.20
842 1231 4.131596 GTCCGTACTAGATTCTCTGCTCT 58.868 47.826 0.00 0.00 0.00 4.09
843 1232 3.251487 GGTCCGTACTAGATTCTCTGCTC 59.749 52.174 0.00 0.00 0.00 4.26
844 1233 3.117813 AGGTCCGTACTAGATTCTCTGCT 60.118 47.826 0.00 0.00 0.00 4.24
845 1234 3.003897 CAGGTCCGTACTAGATTCTCTGC 59.996 52.174 0.00 0.00 0.00 4.26
846 1235 3.566322 CCAGGTCCGTACTAGATTCTCTG 59.434 52.174 0.00 0.00 0.00 3.35
847 1236 3.202595 ACCAGGTCCGTACTAGATTCTCT 59.797 47.826 0.00 0.00 0.00 3.10
848 1237 3.553904 ACCAGGTCCGTACTAGATTCTC 58.446 50.000 0.00 0.00 0.00 2.87
849 1238 3.053842 TGACCAGGTCCGTACTAGATTCT 60.054 47.826 17.59 0.00 0.00 2.40
850 1239 3.285484 TGACCAGGTCCGTACTAGATTC 58.715 50.000 17.59 0.00 0.00 2.52
851 1240 3.377253 TGACCAGGTCCGTACTAGATT 57.623 47.619 17.59 0.00 0.00 2.40
852 1241 3.596940 ATGACCAGGTCCGTACTAGAT 57.403 47.619 17.59 0.00 0.00 1.98
853 1242 3.434167 GGTATGACCAGGTCCGTACTAGA 60.434 52.174 17.59 0.00 38.42 2.43
854 1243 2.883386 GGTATGACCAGGTCCGTACTAG 59.117 54.545 17.59 0.00 38.42 2.57
855 1244 2.423373 GGGTATGACCAGGTCCGTACTA 60.423 54.545 17.59 0.00 41.02 1.82
856 1245 1.687368 GGGTATGACCAGGTCCGTACT 60.687 57.143 17.59 0.00 41.02 2.73
857 1246 0.749049 GGGTATGACCAGGTCCGTAC 59.251 60.000 17.59 17.83 41.02 3.67
858 1247 0.397535 GGGGTATGACCAGGTCCGTA 60.398 60.000 17.59 7.38 41.02 4.02
859 1248 1.688187 GGGGTATGACCAGGTCCGT 60.688 63.158 17.59 8.39 41.02 4.69
860 1249 2.440817 GGGGGTATGACCAGGTCCG 61.441 68.421 17.59 0.00 41.02 4.79
861 1250 1.307517 TGGGGGTATGACCAGGTCC 60.308 63.158 17.59 1.42 41.02 4.46
862 1251 4.492232 TGGGGGTATGACCAGGTC 57.508 61.111 13.35 13.35 41.02 3.85
866 1255 2.679342 GCTGCTGGGGGTATGACCA 61.679 63.158 0.00 0.00 41.02 4.02
867 1256 2.193248 GCTGCTGGGGGTATGACC 59.807 66.667 0.00 0.00 37.60 4.02
868 1257 2.193248 GGCTGCTGGGGGTATGAC 59.807 66.667 0.00 0.00 0.00 3.06
869 1258 3.479203 CGGCTGCTGGGGGTATGA 61.479 66.667 0.00 0.00 0.00 2.15
870 1259 2.343475 ATTCGGCTGCTGGGGGTATG 62.343 60.000 8.89 0.00 0.00 2.39
871 1260 0.766674 TATTCGGCTGCTGGGGGTAT 60.767 55.000 8.89 0.00 0.00 2.73
872 1261 1.383386 TATTCGGCTGCTGGGGGTA 60.383 57.895 8.89 0.00 0.00 3.69
873 1262 2.690881 TATTCGGCTGCTGGGGGT 60.691 61.111 8.89 0.00 0.00 4.95
874 1263 2.203209 GTATTCGGCTGCTGGGGG 60.203 66.667 8.89 0.00 0.00 5.40
875 1264 0.466189 ATTGTATTCGGCTGCTGGGG 60.466 55.000 8.89 0.00 0.00 4.96
876 1265 0.664761 CATTGTATTCGGCTGCTGGG 59.335 55.000 8.89 0.00 0.00 4.45
877 1266 0.029834 GCATTGTATTCGGCTGCTGG 59.970 55.000 8.89 0.00 0.00 4.85
878 1267 0.734309 TGCATTGTATTCGGCTGCTG 59.266 50.000 0.95 0.95 34.02 4.41
879 1268 1.019673 CTGCATTGTATTCGGCTGCT 58.980 50.000 0.00 0.00 34.02 4.24
880 1269 1.016627 TCTGCATTGTATTCGGCTGC 58.983 50.000 0.00 0.00 0.00 5.25
881 1270 3.187227 GGTATCTGCATTGTATTCGGCTG 59.813 47.826 0.00 0.00 0.00 4.85
882 1271 3.403038 GGTATCTGCATTGTATTCGGCT 58.597 45.455 0.00 0.00 0.00 5.52
883 1272 2.157668 CGGTATCTGCATTGTATTCGGC 59.842 50.000 0.00 0.00 0.00 5.54
884 1273 3.390135 ACGGTATCTGCATTGTATTCGG 58.610 45.455 0.00 0.00 0.00 4.30
885 1274 4.318760 CCAACGGTATCTGCATTGTATTCG 60.319 45.833 0.00 0.00 0.00 3.34
886 1275 4.024048 CCCAACGGTATCTGCATTGTATTC 60.024 45.833 0.00 0.00 0.00 1.75
887 1276 3.882888 CCCAACGGTATCTGCATTGTATT 59.117 43.478 0.00 0.00 0.00 1.89
888 1277 3.476552 CCCAACGGTATCTGCATTGTAT 58.523 45.455 0.00 0.00 0.00 2.29
889 1278 2.420827 CCCCAACGGTATCTGCATTGTA 60.421 50.000 0.00 0.00 0.00 2.41
890 1279 1.681780 CCCCAACGGTATCTGCATTGT 60.682 52.381 0.00 0.00 0.00 2.71
891 1280 1.024271 CCCCAACGGTATCTGCATTG 58.976 55.000 0.00 0.00 0.00 2.82
892 1281 0.106719 CCCCCAACGGTATCTGCATT 60.107 55.000 0.00 0.00 0.00 3.56
893 1282 1.279025 ACCCCCAACGGTATCTGCAT 61.279 55.000 0.00 0.00 33.04 3.96
894 1283 1.493854 AACCCCCAACGGTATCTGCA 61.494 55.000 0.00 0.00 33.98 4.41
895 1284 0.746923 GAACCCCCAACGGTATCTGC 60.747 60.000 0.00 0.00 33.98 4.26
896 1285 0.461339 CGAACCCCCAACGGTATCTG 60.461 60.000 0.00 0.00 33.98 2.90
897 1286 1.619807 CCGAACCCCCAACGGTATCT 61.620 60.000 0.00 0.00 41.47 1.98
898 1287 1.153309 CCGAACCCCCAACGGTATC 60.153 63.158 0.00 0.00 41.47 2.24
899 1288 1.613035 TCCGAACCCCCAACGGTAT 60.613 57.895 0.00 0.00 45.71 2.73
900 1289 2.203758 TCCGAACCCCCAACGGTA 60.204 61.111 0.00 0.00 45.71 4.02
901 1290 3.944945 GTCCGAACCCCCAACGGT 61.945 66.667 0.00 0.00 45.71 4.83
902 1291 1.901654 TATGTCCGAACCCCCAACGG 61.902 60.000 0.00 0.00 46.71 4.44
903 1292 0.461339 CTATGTCCGAACCCCCAACG 60.461 60.000 0.00 0.00 0.00 4.10
904 1293 0.906775 TCTATGTCCGAACCCCCAAC 59.093 55.000 0.00 0.00 0.00 3.77
905 1294 1.659022 TTCTATGTCCGAACCCCCAA 58.341 50.000 0.00 0.00 0.00 4.12
906 1295 1.659022 TTTCTATGTCCGAACCCCCA 58.341 50.000 0.00 0.00 0.00 4.96
907 1296 4.132336 GTTATTTCTATGTCCGAACCCCC 58.868 47.826 0.00 0.00 0.00 5.40
908 1297 4.573607 GTGTTATTTCTATGTCCGAACCCC 59.426 45.833 0.00 0.00 0.00 4.95
909 1298 4.573607 GGTGTTATTTCTATGTCCGAACCC 59.426 45.833 0.00 0.00 0.00 4.11
910 1299 4.573607 GGGTGTTATTTCTATGTCCGAACC 59.426 45.833 0.00 0.00 0.00 3.62
911 1300 5.425630 AGGGTGTTATTTCTATGTCCGAAC 58.574 41.667 0.00 0.00 0.00 3.95
912 1301 5.424252 AGAGGGTGTTATTTCTATGTCCGAA 59.576 40.000 0.00 0.00 0.00 4.30
913 1302 4.960469 AGAGGGTGTTATTTCTATGTCCGA 59.040 41.667 0.00 0.00 0.00 4.55
914 1303 5.050490 CAGAGGGTGTTATTTCTATGTCCG 58.950 45.833 0.00 0.00 0.00 4.79
915 1304 4.816925 GCAGAGGGTGTTATTTCTATGTCC 59.183 45.833 0.00 0.00 0.00 4.02
916 1305 5.675538 AGCAGAGGGTGTTATTTCTATGTC 58.324 41.667 0.00 0.00 0.00 3.06
917 1306 5.189736 TGAGCAGAGGGTGTTATTTCTATGT 59.810 40.000 0.00 0.00 0.00 2.29
918 1307 5.525378 GTGAGCAGAGGGTGTTATTTCTATG 59.475 44.000 0.00 0.00 0.00 2.23
919 1308 5.675538 GTGAGCAGAGGGTGTTATTTCTAT 58.324 41.667 0.00 0.00 0.00 1.98
920 1309 4.381612 CGTGAGCAGAGGGTGTTATTTCTA 60.382 45.833 0.00 0.00 0.00 2.10
921 1310 3.617531 CGTGAGCAGAGGGTGTTATTTCT 60.618 47.826 0.00 0.00 0.00 2.52
922 1311 2.673368 CGTGAGCAGAGGGTGTTATTTC 59.327 50.000 0.00 0.00 0.00 2.17
923 1312 2.301870 TCGTGAGCAGAGGGTGTTATTT 59.698 45.455 0.00 0.00 0.00 1.40
924 1313 1.899814 TCGTGAGCAGAGGGTGTTATT 59.100 47.619 0.00 0.00 0.00 1.40
925 1314 1.478510 CTCGTGAGCAGAGGGTGTTAT 59.521 52.381 0.00 0.00 32.38 1.89
926 1315 0.888619 CTCGTGAGCAGAGGGTGTTA 59.111 55.000 0.00 0.00 32.38 2.41
927 1316 0.827925 TCTCGTGAGCAGAGGGTGTT 60.828 55.000 0.00 0.00 36.45 3.32
928 1317 0.613292 ATCTCGTGAGCAGAGGGTGT 60.613 55.000 0.00 0.00 36.45 4.16
929 1318 0.534412 AATCTCGTGAGCAGAGGGTG 59.466 55.000 0.00 0.00 36.45 4.61
930 1319 2.145397 TAATCTCGTGAGCAGAGGGT 57.855 50.000 0.00 0.00 36.45 4.34
931 1320 2.288702 CCATAATCTCGTGAGCAGAGGG 60.289 54.545 0.00 0.00 36.45 4.30
932 1321 2.865670 GCCATAATCTCGTGAGCAGAGG 60.866 54.545 0.00 0.00 36.45 3.69
933 1322 2.402305 GCCATAATCTCGTGAGCAGAG 58.598 52.381 0.00 0.00 37.09 3.35
934 1323 1.069204 GGCCATAATCTCGTGAGCAGA 59.931 52.381 0.00 0.00 0.00 4.26
935 1324 1.506493 GGCCATAATCTCGTGAGCAG 58.494 55.000 0.00 0.00 0.00 4.24
936 1325 0.249447 CGGCCATAATCTCGTGAGCA 60.249 55.000 2.24 0.00 0.00 4.26
937 1326 0.249489 ACGGCCATAATCTCGTGAGC 60.249 55.000 2.24 0.00 34.40 4.26
938 1327 2.225068 AACGGCCATAATCTCGTGAG 57.775 50.000 2.24 0.00 35.93 3.51
939 1328 3.554129 CCATAACGGCCATAATCTCGTGA 60.554 47.826 2.24 0.00 35.93 4.35
940 1329 2.736721 CCATAACGGCCATAATCTCGTG 59.263 50.000 2.24 0.00 35.93 4.35
941 1330 3.040147 CCATAACGGCCATAATCTCGT 57.960 47.619 2.24 0.00 37.45 4.18
953 1342 0.535102 GGTCCATGGAGCCATAACGG 60.535 60.000 29.98 0.00 36.72 4.44
954 1343 0.880278 CGGTCCATGGAGCCATAACG 60.880 60.000 32.72 17.16 39.23 3.18
955 1344 0.468226 TCGGTCCATGGAGCCATAAC 59.532 55.000 32.72 13.04 39.23 1.89
956 1345 1.134220 GTTCGGTCCATGGAGCCATAA 60.134 52.381 32.72 22.66 39.23 1.90
957 1346 0.468226 GTTCGGTCCATGGAGCCATA 59.532 55.000 32.72 18.70 39.23 2.74
958 1347 1.224592 GTTCGGTCCATGGAGCCAT 59.775 57.895 32.72 0.00 39.23 4.40
959 1348 2.668632 GTTCGGTCCATGGAGCCA 59.331 61.111 32.72 21.72 39.23 4.75
960 1349 2.124695 GGTTCGGTCCATGGAGCC 60.125 66.667 32.72 25.04 39.23 4.70
961 1350 2.124695 GGGTTCGGTCCATGGAGC 60.125 66.667 30.24 30.24 39.05 4.70
962 1351 0.107654 GAAGGGTTCGGTCCATGGAG 60.108 60.000 16.81 4.39 0.00 3.86
963 1352 1.559065 GGAAGGGTTCGGTCCATGGA 61.559 60.000 11.44 11.44 0.00 3.41
964 1353 1.077716 GGAAGGGTTCGGTCCATGG 60.078 63.158 4.97 4.97 0.00 3.66
965 1354 0.392998 CAGGAAGGGTTCGGTCCATG 60.393 60.000 0.00 0.00 33.57 3.66
966 1355 1.562672 CCAGGAAGGGTTCGGTCCAT 61.563 60.000 0.00 0.00 33.57 3.41
967 1356 2.221299 CCAGGAAGGGTTCGGTCCA 61.221 63.158 0.00 0.00 33.57 4.02
968 1357 2.669240 CCAGGAAGGGTTCGGTCC 59.331 66.667 0.00 0.00 0.00 4.46
969 1358 2.046217 GCCAGGAAGGGTTCGGTC 60.046 66.667 0.00 0.00 38.09 4.79
970 1359 3.647771 GGCCAGGAAGGGTTCGGT 61.648 66.667 0.00 0.00 38.09 4.69
971 1360 3.204467 TTGGCCAGGAAGGGTTCGG 62.204 63.158 5.11 0.00 38.09 4.30
972 1361 1.675641 CTTGGCCAGGAAGGGTTCG 60.676 63.158 9.80 0.00 38.09 3.95
973 1362 0.609406 GTCTTGGCCAGGAAGGGTTC 60.609 60.000 20.61 1.78 38.09 3.62
974 1363 1.460699 GTCTTGGCCAGGAAGGGTT 59.539 57.895 20.61 0.00 38.09 4.11
975 1364 2.895424 CGTCTTGGCCAGGAAGGGT 61.895 63.158 20.61 0.00 38.09 4.34
976 1365 1.550130 TACGTCTTGGCCAGGAAGGG 61.550 60.000 29.16 19.28 38.09 3.95
977 1366 0.391263 GTACGTCTTGGCCAGGAAGG 60.391 60.000 29.16 21.45 41.84 3.46
978 1367 0.320374 TGTACGTCTTGGCCAGGAAG 59.680 55.000 25.52 25.52 0.00 3.46
982 1371 0.108804 ATCGTGTACGTCTTGGCCAG 60.109 55.000 5.11 0.00 40.80 4.85
1195 1584 2.509561 GCGGAGGAAGAAGGCGTC 60.510 66.667 0.00 0.00 0.00 5.19
1283 1687 0.250081 GATGTCTTCATCCCCCTCGC 60.250 60.000 0.00 0.00 43.15 5.03
1289 1693 1.307097 GCTGCTGATGTCTTCATCCC 58.693 55.000 5.88 0.00 46.96 3.85
1335 1742 0.617249 CCCTCTGCTCCTCCTTCAGT 60.617 60.000 0.00 0.00 0.00 3.41
1405 1988 2.676121 CATGAGTTTGGGCCGGCA 60.676 61.111 30.85 5.28 0.00 5.69
1484 2437 1.005037 AATCCGTCGTTGCTGCTCA 60.005 52.632 0.00 0.00 0.00 4.26
1656 3071 1.881252 CATCGGGAAAGCGTACGGG 60.881 63.158 18.39 0.00 0.00 5.28
1671 3086 0.753262 ATCAGTAGCCGGTGTCCATC 59.247 55.000 1.90 0.00 0.00 3.51
1707 3123 4.502171 CACATATGTGCAGGTGAAACAA 57.498 40.909 22.27 0.00 37.72 2.83
1720 3148 7.275183 TCCTACTACGTACAGTACACATATGT 58.725 38.462 11.37 1.41 43.30 2.29
1721 3149 7.095313 CCTCCTACTACGTACAGTACACATATG 60.095 44.444 11.37 0.00 0.00 1.78
1722 3150 6.933521 CCTCCTACTACGTACAGTACACATAT 59.066 42.308 11.37 0.00 0.00 1.78
1723 3151 6.127054 ACCTCCTACTACGTACAGTACACATA 60.127 42.308 11.37 0.00 0.00 2.29
1724 3152 5.121811 CCTCCTACTACGTACAGTACACAT 58.878 45.833 11.37 0.00 0.00 3.21
1764 3199 2.488347 GCCAAAAAGTCCTCCTACCACA 60.488 50.000 0.00 0.00 0.00 4.17
1775 3210 6.966021 TCACATACTAGTTTGCCAAAAAGTC 58.034 36.000 12.62 0.00 0.00 3.01
1781 3216 5.240623 CCTTGTTCACATACTAGTTTGCCAA 59.759 40.000 12.62 9.56 0.00 4.52
1792 3227 2.789409 AGCCTCCCTTGTTCACATAC 57.211 50.000 0.00 0.00 0.00 2.39
1821 3256 6.571537 CGCATATTTTGTACCTTCCCTTGTTT 60.572 38.462 0.00 0.00 0.00 2.83
1822 3257 5.105917 CGCATATTTTGTACCTTCCCTTGTT 60.106 40.000 0.00 0.00 0.00 2.83
1823 3258 4.398044 CGCATATTTTGTACCTTCCCTTGT 59.602 41.667 0.00 0.00 0.00 3.16
1824 3259 4.202010 CCGCATATTTTGTACCTTCCCTTG 60.202 45.833 0.00 0.00 0.00 3.61
1825 3260 3.951680 CCGCATATTTTGTACCTTCCCTT 59.048 43.478 0.00 0.00 0.00 3.95
1826 3261 3.053917 ACCGCATATTTTGTACCTTCCCT 60.054 43.478 0.00 0.00 0.00 4.20
1827 3262 3.284617 ACCGCATATTTTGTACCTTCCC 58.715 45.455 0.00 0.00 0.00 3.97
1828 3263 6.628919 ATTACCGCATATTTTGTACCTTCC 57.371 37.500 0.00 0.00 0.00 3.46
1843 3278 9.239002 GCAACATAAAATGTATAAATTACCGCA 57.761 29.630 0.00 0.00 44.07 5.69
1844 3279 9.239002 TGCAACATAAAATGTATAAATTACCGC 57.761 29.630 0.00 0.00 44.07 5.68
1880 3315 5.757988 TCCTTGTGTACTTGTACCCTTTTT 58.242 37.500 8.25 0.00 0.00 1.94
1881 3316 5.376756 TCCTTGTGTACTTGTACCCTTTT 57.623 39.130 8.25 0.00 0.00 2.27
1882 3317 5.163131 ACATCCTTGTGTACTTGTACCCTTT 60.163 40.000 8.25 0.00 33.85 3.11
1883 3318 4.349930 ACATCCTTGTGTACTTGTACCCTT 59.650 41.667 8.25 0.00 33.85 3.95
1884 3319 3.908103 ACATCCTTGTGTACTTGTACCCT 59.092 43.478 8.25 0.00 33.85 4.34
1885 3320 4.000988 CACATCCTTGTGTACTTGTACCC 58.999 47.826 8.25 0.00 46.68 3.69
1897 3332 7.994425 TTTTACATACACATCACATCCTTGT 57.006 32.000 0.00 0.00 36.15 3.16
1898 3333 8.514594 AGTTTTTACATACACATCACATCCTTG 58.485 33.333 0.00 0.00 0.00 3.61
1899 3334 8.635765 AGTTTTTACATACACATCACATCCTT 57.364 30.769 0.00 0.00 0.00 3.36
1900 3335 8.635765 AAGTTTTTACATACACATCACATCCT 57.364 30.769 0.00 0.00 0.00 3.24
1901 3336 9.691362 AAAAGTTTTTACATACACATCACATCC 57.309 29.630 0.00 0.00 0.00 3.51
1913 3348 9.667989 GCCTTCGTTCTAAAAAGTTTTTACATA 57.332 29.630 15.29 3.59 0.00 2.29
1914 3349 8.410912 AGCCTTCGTTCTAAAAAGTTTTTACAT 58.589 29.630 15.29 0.00 0.00 2.29
1915 3350 7.764331 AGCCTTCGTTCTAAAAAGTTTTTACA 58.236 30.769 15.29 4.57 0.00 2.41
1916 3351 7.111179 CGAGCCTTCGTTCTAAAAAGTTTTTAC 59.889 37.037 15.29 8.99 41.84 2.01
1917 3352 7.127686 CGAGCCTTCGTTCTAAAAAGTTTTTA 58.872 34.615 17.62 17.62 41.84 1.52
1918 3353 5.969435 CGAGCCTTCGTTCTAAAAAGTTTTT 59.031 36.000 17.26 17.26 41.84 1.94
1919 3354 5.507974 CGAGCCTTCGTTCTAAAAAGTTTT 58.492 37.500 0.00 0.00 41.84 2.43
1920 3355 5.091910 CGAGCCTTCGTTCTAAAAAGTTT 57.908 39.130 0.00 0.00 41.84 2.66
1921 3356 4.727235 CGAGCCTTCGTTCTAAAAAGTT 57.273 40.909 0.00 0.00 41.84 2.66
1992 3427 2.351060 CGATGTGCTTGATGTTGTGCTT 60.351 45.455 0.00 0.00 0.00 3.91
1994 3429 1.609932 CGATGTGCTTGATGTTGTGC 58.390 50.000 0.00 0.00 0.00 4.57
2040 3475 4.770795 ACTGTGTTGAGTTGTAAGCTTCT 58.229 39.130 0.00 0.00 0.00 2.85
2058 3493 9.555727 TCTTTTTGTTTTGAGCTAGTATACTGT 57.444 29.630 15.90 0.00 0.00 3.55
2108 3545 2.203195 TTTGCTGCGGTCTGCTGT 60.203 55.556 11.69 0.00 46.63 4.40
2110 3547 2.203195 TGTTTGCTGCGGTCTGCT 60.203 55.556 5.01 0.00 46.63 4.24
2128 3565 1.794222 GGTCGCAATCCTTGGTTCG 59.206 57.895 0.00 0.00 0.00 3.95
2147 3584 2.887568 CCTCGTCGTGCTCATGCC 60.888 66.667 0.00 0.00 38.71 4.40
2368 3806 0.322648 TGAGGTGTGCTCATGTCCTG 59.677 55.000 1.49 0.00 0.00 3.86
2397 3835 2.044650 TGTCCTAGGTAGCGCCGT 60.045 61.111 9.08 0.00 43.70 5.68
2400 3838 1.035932 TCAGGTGTCCTAGGTAGCGC 61.036 60.000 9.08 0.00 29.64 5.92
2404 3842 5.370679 GTTGTTTTTCAGGTGTCCTAGGTA 58.629 41.667 9.08 0.00 29.64 3.08
2440 3878 0.036022 GTTCTTCAGTGGCTGCTCCT 59.964 55.000 0.00 0.00 35.26 3.69
2495 3933 0.038159 CCGACGACTCTTGCTCCTTT 60.038 55.000 0.00 0.00 0.00 3.11
2496 3934 1.587054 CCGACGACTCTTGCTCCTT 59.413 57.895 0.00 0.00 0.00 3.36
2520 3958 0.883370 GACGCCCGGTGTTTCTCTTT 60.883 55.000 4.79 0.00 0.00 2.52
2540 3978 4.078516 AACACGCCCCTAGCCGTC 62.079 66.667 0.00 0.00 38.78 4.79
2546 3984 1.594833 CAGTAGCAACACGCCCCTA 59.405 57.895 0.00 0.00 44.04 3.53
2551 3990 3.788766 CCGGCAGTAGCAACACGC 61.789 66.667 0.00 0.00 44.61 5.34
2580 4019 2.203538 TCCGGCGGTAGGGGATAC 60.204 66.667 27.32 0.00 0.00 2.24
2602 4063 3.522731 GTGGTGGCGTGTTTGGCA 61.523 61.111 0.00 0.00 42.76 4.92
2620 4081 1.461268 TCAAGGGTGGTGCTCCTCA 60.461 57.895 6.34 0.00 32.02 3.86
2645 4106 0.839277 CACATGGCAGTCTATCCCCA 59.161 55.000 0.00 0.00 0.00 4.96
2651 4112 2.028112 GTCTGGTTCACATGGCAGTCTA 60.028 50.000 0.00 0.00 0.00 2.59
2657 4118 1.003839 TCGGTCTGGTTCACATGGC 60.004 57.895 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.