Multiple sequence alignment - TraesCS3B01G568100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G568100 chr3B 100.000 3797 0 0 1 3797 799813684 799809888 0.000000e+00 7012.0
1 TraesCS3B01G568100 chr3B 86.491 607 63 11 1153 1753 720219238 720218645 0.000000e+00 649.0
2 TraesCS3B01G568100 chr3B 75.707 778 118 49 2248 2975 720218542 720217786 1.320000e-84 324.0
3 TraesCS3B01G568100 chr4B 91.006 3013 157 59 557 3493 662421851 662418877 0.000000e+00 3958.0
4 TraesCS3B01G568100 chr4B 85.994 1378 121 37 419 1764 661303530 661304867 0.000000e+00 1410.0
5 TraesCS3B01G568100 chr4B 78.800 1000 146 48 2215 3194 661305216 661306169 2.510000e-171 612.0
6 TraesCS3B01G568100 chr4B 89.362 47 5 0 475 521 662421911 662421865 4.100000e-05 60.2
7 TraesCS3B01G568100 chr4D 93.231 2024 83 16 3 2011 506288375 506286391 0.000000e+00 2929.0
8 TraesCS3B01G568100 chr4D 93.684 1520 59 8 2007 3493 506286355 506284840 0.000000e+00 2241.0
9 TraesCS3B01G568100 chr4D 84.672 946 87 20 417 1338 506050331 506051242 0.000000e+00 891.0
10 TraesCS3B01G568100 chr4D 79.576 896 138 31 2207 3087 506052027 506052892 1.950000e-167 599.0
11 TraesCS3B01G568100 chr4D 92.500 360 26 1 1405 1764 506051363 506051721 7.270000e-142 514.0
12 TraesCS3B01G568100 chr4D 92.208 77 6 0 2062 2138 506051827 506051903 4.010000e-20 110.0
13 TraesCS3B01G568100 chr5A 85.022 1382 135 29 417 1765 702225636 702226978 0.000000e+00 1339.0
14 TraesCS3B01G568100 chr5A 86.050 1276 112 41 2169 3413 702521531 702520291 0.000000e+00 1310.0
15 TraesCS3B01G568100 chr5A 88.763 792 58 19 565 1344 702523221 702522449 0.000000e+00 941.0
16 TraesCS3B01G568100 chr5A 86.855 601 51 11 1366 1963 702522392 702521817 0.000000e+00 647.0
17 TraesCS3B01G568100 chr5A 77.832 1024 157 44 2207 3201 702227570 702228552 1.530000e-158 569.0
18 TraesCS3B01G568100 chr5A 99.026 308 0 2 3492 3797 18408365 18408059 1.990000e-152 549.0
19 TraesCS3B01G568100 chr5A 84.127 252 38 2 1 251 671523368 671523618 3.790000e-60 243.0
20 TraesCS3B01G568100 chr5A 82.869 251 40 3 1 249 305561138 305560889 4.940000e-54 222.0
21 TraesCS3B01G568100 chr5A 81.600 250 39 6 3 248 311913663 311913909 2.310000e-47 200.0
22 TraesCS3B01G568100 chr3D 86.992 615 65 9 1153 1757 544361097 544360488 0.000000e+00 678.0
23 TraesCS3B01G568100 chr3D 79.669 423 71 13 2248 2659 544360405 544359987 1.330000e-74 291.0
24 TraesCS3B01G568100 chr3D 82.143 252 35 6 1 251 511735104 511734862 1.380000e-49 207.0
25 TraesCS3B01G568100 chr3A 86.341 615 61 18 1153 1757 681343656 681343055 0.000000e+00 649.0
26 TraesCS3B01G568100 chr6B 98.706 309 4 0 3489 3797 127000323 127000631 1.990000e-152 549.0
27 TraesCS3B01G568100 chr6B 99.023 307 0 2 3492 3797 188485219 188484915 7.170000e-152 547.0
28 TraesCS3B01G568100 chr6B 98.089 314 4 2 3485 3797 29369670 29369358 2.580000e-151 545.0
29 TraesCS3B01G568100 chr1B 99.020 306 1 1 3492 3797 530764722 530765025 7.170000e-152 547.0
30 TraesCS3B01G568100 chr6A 98.392 311 4 1 3487 3797 41589038 41588729 2.580000e-151 545.0
31 TraesCS3B01G568100 chr4A 98.089 314 5 1 3485 3797 738975565 738975878 2.580000e-151 545.0
32 TraesCS3B01G568100 chr1A 98.697 307 0 2 3492 3797 3838759 3839062 3.340000e-150 542.0
33 TraesCS3B01G568100 chr7B 98.058 309 4 2 3490 3797 731032665 731032358 1.550000e-148 536.0
34 TraesCS3B01G568100 chr7A 83.203 256 40 3 1 254 294322201 294321947 8.200000e-57 231.0
35 TraesCS3B01G568100 chr2A 82.812 256 38 4 3 253 528139725 528139979 1.370000e-54 224.0
36 TraesCS3B01G568100 chr1D 82.143 252 42 3 1 250 332268753 332268503 2.970000e-51 213.0
37 TraesCS3B01G568100 chr2B 80.800 250 43 4 1 249 87518647 87518892 1.390000e-44 191.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G568100 chr3B 799809888 799813684 3796 True 7012.0 7012 100.000000 1 3797 1 chr3B.!!$R1 3796
1 TraesCS3B01G568100 chr3B 720217786 720219238 1452 True 486.5 649 81.099000 1153 2975 2 chr3B.!!$R2 1822
2 TraesCS3B01G568100 chr4B 662418877 662421911 3034 True 2009.1 3958 90.184000 475 3493 2 chr4B.!!$R1 3018
3 TraesCS3B01G568100 chr4B 661303530 661306169 2639 False 1011.0 1410 82.397000 419 3194 2 chr4B.!!$F1 2775
4 TraesCS3B01G568100 chr4D 506284840 506288375 3535 True 2585.0 2929 93.457500 3 3493 2 chr4D.!!$R1 3490
5 TraesCS3B01G568100 chr4D 506050331 506052892 2561 False 528.5 891 87.239000 417 3087 4 chr4D.!!$F1 2670
6 TraesCS3B01G568100 chr5A 702520291 702523221 2930 True 966.0 1310 87.222667 565 3413 3 chr5A.!!$R3 2848
7 TraesCS3B01G568100 chr5A 702225636 702228552 2916 False 954.0 1339 81.427000 417 3201 2 chr5A.!!$F3 2784
8 TraesCS3B01G568100 chr3D 544359987 544361097 1110 True 484.5 678 83.330500 1153 2659 2 chr3D.!!$R2 1506
9 TraesCS3B01G568100 chr3A 681343055 681343656 601 True 649.0 649 86.341000 1153 1757 1 chr3A.!!$R1 604

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
221 223 0.035439 AAACGCTGACCGAATCCCAT 60.035 50.000 0.00 0.00 41.02 4.00 F
222 224 0.744414 AACGCTGACCGAATCCCATG 60.744 55.000 0.00 0.00 41.02 3.66 F
1338 1403 0.396695 TCCTCATCCTCACCGGTACC 60.397 60.000 6.87 0.16 0.00 3.34 F
1639 1764 1.135139 CTGGACGACGAGATCAACCAT 59.865 52.381 0.00 0.00 33.52 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1251 1316 0.677288 ACTTGACGTCGTTGATGGGA 59.323 50.000 11.62 0.0 0.00 4.37 R
2192 2719 2.288886 GCCTCTACGAGTTGGTCAAAGT 60.289 50.000 0.00 0.0 0.00 2.66 R
2460 3050 1.153086 GATCGTGGCATTGGGCTCT 60.153 57.895 0.00 0.0 44.01 4.09 R
3518 4183 0.096976 CTAATGGCAGTTGCGAACCG 59.903 55.000 0.00 0.0 43.26 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.530891 CTCCCTTATCGGAGCCGGA 60.531 63.158 5.05 0.00 43.01 5.14
39 40 2.626780 GGAGCCGGACAAACCTTGC 61.627 63.158 5.05 0.00 36.31 4.01
64 65 7.101652 TGTAATAGACAGTCAGGAAGATGTC 57.898 40.000 2.66 0.00 41.86 3.06
73 74 3.089284 TCAGGAAGATGTCGTGCTAAGA 58.911 45.455 0.00 0.00 41.11 2.10
121 122 2.670592 TCGCCACCGACGAAGAGA 60.671 61.111 0.00 0.00 38.82 3.10
124 125 1.289380 GCCACCGACGAAGAGAAGT 59.711 57.895 0.00 0.00 0.00 3.01
137 138 5.209240 CGAAGAGAAGTGTAGATCGGAATC 58.791 45.833 0.00 0.00 0.00 2.52
145 146 4.058817 GTGTAGATCGGAATCATCCAACC 58.941 47.826 0.00 0.00 46.97 3.77
163 164 2.047061 ACCTGTACACACATGGACACT 58.953 47.619 5.17 0.00 45.28 3.55
167 168 2.224185 TGTACACACATGGACACTGACC 60.224 50.000 0.00 0.00 45.28 4.02
208 210 2.223947 GGATCCACCAAAAACAAACGCT 60.224 45.455 6.95 0.00 38.79 5.07
220 222 0.953471 CAAACGCTGACCGAATCCCA 60.953 55.000 0.00 0.00 41.02 4.37
221 223 0.035439 AAACGCTGACCGAATCCCAT 60.035 50.000 0.00 0.00 41.02 4.00
222 224 0.744414 AACGCTGACCGAATCCCATG 60.744 55.000 0.00 0.00 41.02 3.66
227 229 2.869636 GCTGACCGAATCCCATGAGATC 60.870 54.545 0.00 0.00 0.00 2.75
230 232 2.304180 GACCGAATCCCATGAGATCCAT 59.696 50.000 0.00 0.00 35.44 3.41
319 322 8.856490 TTCAGCTTTTCAAAATAGTCTTTCAC 57.144 30.769 0.00 0.00 0.00 3.18
368 371 5.491070 TGCAATATCAGCTTCTACAACTGT 58.509 37.500 0.00 0.00 33.12 3.55
479 482 1.270518 GGCGCATCTGATAGGACACAT 60.271 52.381 10.83 0.00 0.00 3.21
514 517 1.478631 AGCTTAAGGGCTTCCATTGC 58.521 50.000 4.29 0.00 39.86 3.56
524 529 4.525487 AGGGCTTCCATTGCATATAATGTG 59.475 41.667 0.00 0.00 36.54 3.21
602 608 3.119849 GGAAGTCATGTGTCAATTTCCCG 60.120 47.826 0.00 0.00 0.00 5.14
741 756 5.296151 TCTCTTGAAAAAGCAGAGAGGAA 57.704 39.130 0.00 0.00 35.66 3.36
743 758 4.780815 TCTTGAAAAAGCAGAGAGGAACA 58.219 39.130 0.00 0.00 0.00 3.18
767 782 6.019640 CACACATGAAAACAGAAATGTTCCAC 60.020 38.462 0.00 0.00 30.98 4.02
795 810 3.826157 ACAATATATGCCCATTTCCACCG 59.174 43.478 0.00 0.00 0.00 4.94
865 889 2.534019 GCACCGGTATCACCATGCG 61.534 63.158 6.87 0.00 39.34 4.73
904 931 7.380423 AGTTGATCCAGGTGCTATATAAAGT 57.620 36.000 0.00 0.00 0.00 2.66
977 1013 1.135575 AGTAAGCTAACGAACCCGACG 60.136 52.381 0.00 0.00 39.50 5.12
1338 1403 0.396695 TCCTCATCCTCACCGGTACC 60.397 60.000 6.87 0.16 0.00 3.34
1367 1457 5.591099 TCCAACATCTTTTCTTGTTTGAGC 58.409 37.500 0.00 0.00 33.93 4.26
1399 1510 5.467902 TTTCTTTTGCTTACACGTACGTT 57.532 34.783 20.23 12.76 0.00 3.99
1639 1764 1.135139 CTGGACGACGAGATCAACCAT 59.865 52.381 0.00 0.00 33.52 3.55
1660 1785 4.511246 ATCGTCCGCCCCCTCGTA 62.511 66.667 0.00 0.00 0.00 3.43
1787 1912 1.137872 GGGCATCTATAGCAGATCCCG 59.862 57.143 0.00 0.00 42.03 5.14
1891 2043 3.532641 AATTTGAGGCTTTCACTCCCT 57.467 42.857 0.00 0.00 34.94 4.20
1903 2055 5.648092 GCTTTCACTCCCTAAAAATCTGCTA 59.352 40.000 0.00 0.00 0.00 3.49
1904 2056 6.183360 GCTTTCACTCCCTAAAAATCTGCTAG 60.183 42.308 0.00 0.00 0.00 3.42
1908 2060 6.879458 TCACTCCCTAAAAATCTGCTAGAAAC 59.121 38.462 0.00 0.00 0.00 2.78
2044 2260 4.332543 CGCTAGTTGTTTCATGCCTTCATA 59.667 41.667 0.00 0.00 0.00 2.15
2403 2985 6.162777 GTGCATAATCCCTTGTTGCTTTTTA 58.837 36.000 0.00 0.00 0.00 1.52
2449 3039 1.682867 CTAATTCGTGCGTGCGAGCA 61.683 55.000 1.54 1.54 45.96 4.26
2706 3313 3.749088 CCAATGACGGCAAGTGTTTACTA 59.251 43.478 0.00 0.00 35.69 1.82
2800 3420 1.630369 AGCCCTTCTGCATGTAGAACA 59.370 47.619 20.71 3.71 33.39 3.18
2848 3497 4.083961 TGCAATCGACGACTACTATCTAGC 60.084 45.833 0.00 0.00 0.00 3.42
3028 3683 2.823747 TGTTCTCTATGGTACTGCACGT 59.176 45.455 0.00 0.00 0.00 4.49
3333 3998 6.567050 AGAACACGTTACAAAGTTCAGAGTA 58.433 36.000 14.33 0.00 42.01 2.59
3364 4029 2.083774 CACACAACAGACACCACAACT 58.916 47.619 0.00 0.00 0.00 3.16
3470 4135 4.131596 CCGACAACACCCTTTAAAGAGAA 58.868 43.478 16.98 0.00 0.00 2.87
3493 4158 1.202382 GCTAGTGTCGTATGGGACCAC 60.202 57.143 0.00 0.00 36.07 4.16
3494 4159 2.376109 CTAGTGTCGTATGGGACCACT 58.624 52.381 0.00 0.00 36.07 4.00
3495 4160 0.895530 AGTGTCGTATGGGACCACTG 59.104 55.000 0.00 0.00 36.07 3.66
3496 4161 0.108329 GTGTCGTATGGGACCACTGG 60.108 60.000 0.00 0.00 36.07 4.00
3497 4162 0.543410 TGTCGTATGGGACCACTGGT 60.543 55.000 0.00 0.00 39.44 4.00
3498 4163 0.108329 GTCGTATGGGACCACTGGTG 60.108 60.000 5.10 0.00 35.25 4.17
3509 4174 2.049435 CACTGGTGGAAAAAGGGCC 58.951 57.895 0.00 0.00 0.00 5.80
3510 4175 0.469892 CACTGGTGGAAAAAGGGCCT 60.470 55.000 0.00 0.00 0.00 5.19
3511 4176 0.264657 ACTGGTGGAAAAAGGGCCTT 59.735 50.000 14.48 14.48 0.00 4.35
3512 4177 1.343985 ACTGGTGGAAAAAGGGCCTTT 60.344 47.619 25.68 25.68 34.94 3.11
3513 4178 1.070601 CTGGTGGAAAAAGGGCCTTTG 59.929 52.381 31.06 12.80 33.64 2.77
3514 4179 0.396435 GGTGGAAAAAGGGCCTTTGG 59.604 55.000 31.06 0.00 33.64 3.28
3515 4180 1.128200 GTGGAAAAAGGGCCTTTGGT 58.872 50.000 31.06 21.81 33.64 3.67
3516 4181 1.070134 GTGGAAAAAGGGCCTTTGGTC 59.930 52.381 31.06 27.31 33.64 4.02
3517 4182 0.317160 GGAAAAAGGGCCTTTGGTCG 59.683 55.000 31.06 0.00 33.64 4.79
3518 4183 0.319555 GAAAAAGGGCCTTTGGTCGC 60.320 55.000 31.06 14.98 33.64 5.19
3519 4184 2.082629 AAAAAGGGCCTTTGGTCGCG 62.083 55.000 31.06 0.00 33.64 5.87
3523 4188 3.733960 GGCCTTTGGTCGCGGTTC 61.734 66.667 6.13 0.00 0.00 3.62
3524 4189 4.084888 GCCTTTGGTCGCGGTTCG 62.085 66.667 6.13 0.00 40.15 3.95
3535 4200 2.953821 CGGTTCGCAACTGCCATT 59.046 55.556 0.00 0.00 37.91 3.16
3536 4201 2.167161 CGGTTCGCAACTGCCATTA 58.833 52.632 0.00 0.00 37.91 1.90
3537 4202 0.096976 CGGTTCGCAACTGCCATTAG 59.903 55.000 0.00 0.00 37.91 1.73
3538 4203 1.165270 GGTTCGCAACTGCCATTAGT 58.835 50.000 0.00 0.00 37.91 2.24
3539 4204 1.130561 GGTTCGCAACTGCCATTAGTC 59.869 52.381 0.00 0.00 37.91 2.59
3540 4205 1.075542 TTCGCAACTGCCATTAGTCG 58.924 50.000 0.00 0.00 37.91 4.18
3541 4206 1.060937 CGCAACTGCCATTAGTCGC 59.939 57.895 0.00 0.00 37.91 5.19
3542 4207 1.060937 GCAACTGCCATTAGTCGCG 59.939 57.895 0.00 0.00 34.31 5.87
3543 4208 1.715585 CAACTGCCATTAGTCGCGG 59.284 57.895 6.13 0.00 37.39 6.46
3544 4209 1.019278 CAACTGCCATTAGTCGCGGT 61.019 55.000 6.13 0.00 46.47 5.68
3545 4210 1.295423 ACTGCCATTAGTCGCGGTT 59.705 52.632 6.13 0.00 41.86 4.44
3546 4211 1.019278 ACTGCCATTAGTCGCGGTTG 61.019 55.000 6.13 0.00 41.86 3.77
3547 4212 2.309764 CTGCCATTAGTCGCGGTTGC 62.310 60.000 6.13 0.28 37.91 4.17
3565 4230 2.051345 GCAACCGCGACCAAACAG 60.051 61.111 8.23 0.00 0.00 3.16
3566 4231 2.637025 CAACCGCGACCAAACAGG 59.363 61.111 8.23 0.00 45.67 4.00
3567 4232 3.284449 AACCGCGACCAAACAGGC 61.284 61.111 8.23 0.00 43.14 4.85
3572 4237 4.072088 CGACCAAACAGGCGCGAC 62.072 66.667 12.10 7.34 43.14 5.19
3573 4238 2.665185 GACCAAACAGGCGCGACT 60.665 61.111 9.84 9.84 43.14 4.18
3574 4239 1.373748 GACCAAACAGGCGCGACTA 60.374 57.895 17.67 0.00 43.14 2.59
3575 4240 0.947180 GACCAAACAGGCGCGACTAA 60.947 55.000 17.67 0.00 43.14 2.24
3576 4241 0.533308 ACCAAACAGGCGCGACTAAA 60.533 50.000 17.67 0.00 43.14 1.85
3577 4242 0.165944 CCAAACAGGCGCGACTAAAG 59.834 55.000 17.67 4.78 0.00 1.85
3578 4243 0.165944 CAAACAGGCGCGACTAAAGG 59.834 55.000 17.67 4.30 0.00 3.11
3579 4244 1.574702 AAACAGGCGCGACTAAAGGC 61.575 55.000 17.67 0.00 0.00 4.35
3580 4245 3.195698 CAGGCGCGACTAAAGGCC 61.196 66.667 17.67 0.00 45.91 5.19
3581 4246 4.468689 AGGCGCGACTAAAGGCCC 62.469 66.667 16.12 0.00 46.75 5.80
3598 4263 2.666812 CCCCCTTTAGTCGCGGTT 59.333 61.111 6.13 0.00 0.00 4.44
3599 4264 1.743995 CCCCCTTTAGTCGCGGTTG 60.744 63.158 6.13 0.00 0.00 3.77
3600 4265 2.396157 CCCCTTTAGTCGCGGTTGC 61.396 63.158 6.13 0.00 37.91 4.17
3601 4266 1.375523 CCCTTTAGTCGCGGTTGCT 60.376 57.895 6.13 2.31 39.65 3.91
3602 4267 0.953960 CCCTTTAGTCGCGGTTGCTT 60.954 55.000 6.13 0.00 39.65 3.91
3603 4268 1.673626 CCCTTTAGTCGCGGTTGCTTA 60.674 52.381 6.13 0.00 39.65 3.09
3604 4269 2.070783 CCTTTAGTCGCGGTTGCTTAA 58.929 47.619 6.13 0.00 39.65 1.85
3605 4270 2.093783 CCTTTAGTCGCGGTTGCTTAAG 59.906 50.000 6.13 9.06 39.65 1.85
3606 4271 2.728690 TTAGTCGCGGTTGCTTAAGA 57.271 45.000 6.13 0.00 39.65 2.10
3607 4272 2.728690 TAGTCGCGGTTGCTTAAGAA 57.271 45.000 6.13 0.00 39.65 2.52
3608 4273 1.145803 AGTCGCGGTTGCTTAAGAAC 58.854 50.000 6.13 7.82 39.65 3.01
3609 4274 0.165295 GTCGCGGTTGCTTAAGAACC 59.835 55.000 19.09 19.09 39.71 3.62
3613 4278 2.535588 GGTTGCTTAAGAACCGCGA 58.464 52.632 8.23 0.00 33.85 5.87
3614 4279 0.165295 GGTTGCTTAAGAACCGCGAC 59.835 55.000 8.23 0.93 37.34 5.19
3615 4280 1.145803 GTTGCTTAAGAACCGCGACT 58.854 50.000 8.23 0.30 35.64 4.18
3616 4281 2.331194 GTTGCTTAAGAACCGCGACTA 58.669 47.619 8.23 0.00 35.64 2.59
3617 4282 2.728690 TGCTTAAGAACCGCGACTAA 57.271 45.000 8.23 0.00 0.00 2.24
3618 4283 3.029320 TGCTTAAGAACCGCGACTAAA 57.971 42.857 8.23 0.00 0.00 1.85
3619 4284 2.991190 TGCTTAAGAACCGCGACTAAAG 59.009 45.455 8.23 4.60 0.00 1.85
3620 4285 2.347755 GCTTAAGAACCGCGACTAAAGG 59.652 50.000 8.23 0.00 0.00 3.11
3621 4286 2.000429 TAAGAACCGCGACTAAAGGC 58.000 50.000 8.23 0.00 0.00 4.35
3622 4287 0.672711 AAGAACCGCGACTAAAGGCC 60.673 55.000 8.23 0.00 0.00 5.19
3623 4288 2.046604 AACCGCGACTAAAGGCCC 60.047 61.111 8.23 0.00 0.00 5.80
3624 4289 3.945304 AACCGCGACTAAAGGCCCG 62.945 63.158 8.23 0.00 0.00 6.13
3625 4290 4.446413 CCGCGACTAAAGGCCCGT 62.446 66.667 8.23 0.00 0.00 5.28
3626 4291 2.884207 CGCGACTAAAGGCCCGTC 60.884 66.667 0.00 0.02 0.00 4.79
3627 4292 2.510918 GCGACTAAAGGCCCGTCC 60.511 66.667 0.00 0.00 0.00 4.79
3628 4293 2.975536 CGACTAAAGGCCCGTCCA 59.024 61.111 0.00 0.00 37.29 4.02
3629 4294 1.447314 CGACTAAAGGCCCGTCCAC 60.447 63.158 0.00 0.00 37.29 4.02
3630 4295 1.447314 GACTAAAGGCCCGTCCACG 60.447 63.158 0.00 0.00 37.29 4.94
3631 4296 2.163601 GACTAAAGGCCCGTCCACGT 62.164 60.000 0.00 0.00 37.29 4.49
3632 4297 1.740296 CTAAAGGCCCGTCCACGTG 60.740 63.158 9.08 9.08 37.29 4.49
3633 4298 3.242897 TAAAGGCCCGTCCACGTGG 62.243 63.158 29.26 29.26 37.29 4.94
3666 4331 3.078836 CGGGGCGGAGGACCTTTA 61.079 66.667 0.00 0.00 43.03 1.85
3667 4332 2.908796 GGGGCGGAGGACCTTTAG 59.091 66.667 0.00 0.00 43.03 1.85
3668 4333 1.993948 GGGGCGGAGGACCTTTAGT 60.994 63.158 0.00 0.00 43.03 2.24
3669 4334 1.521141 GGGCGGAGGACCTTTAGTC 59.479 63.158 0.00 0.00 45.51 2.59
3677 4342 3.808583 GACCTTTAGTCGCGGTTCT 57.191 52.632 6.13 5.42 35.30 3.01
3678 4343 2.075979 GACCTTTAGTCGCGGTTCTT 57.924 50.000 6.13 0.00 35.30 2.52
3679 4344 1.991264 GACCTTTAGTCGCGGTTCTTC 59.009 52.381 6.13 0.00 35.30 2.87
3680 4345 1.617357 ACCTTTAGTCGCGGTTCTTCT 59.383 47.619 6.13 0.00 0.00 2.85
3681 4346 1.993370 CCTTTAGTCGCGGTTCTTCTG 59.007 52.381 6.13 0.00 0.00 3.02
3682 4347 1.993370 CTTTAGTCGCGGTTCTTCTGG 59.007 52.381 6.13 0.00 0.00 3.86
3683 4348 0.389426 TTAGTCGCGGTTCTTCTGGC 60.389 55.000 6.13 0.00 0.00 4.85
3684 4349 2.221906 TAGTCGCGGTTCTTCTGGCC 62.222 60.000 6.13 0.00 0.00 5.36
3685 4350 3.621805 TCGCGGTTCTTCTGGCCA 61.622 61.111 4.71 4.71 0.00 5.36
3686 4351 2.668212 CGCGGTTCTTCTGGCCAA 60.668 61.111 7.01 0.00 0.00 4.52
3687 4352 2.954611 GCGGTTCTTCTGGCCAAC 59.045 61.111 7.01 0.29 0.00 3.77
3688 4353 2.626780 GCGGTTCTTCTGGCCAACC 61.627 63.158 12.82 12.82 36.91 3.77
3689 4354 3.668386 GGTTCTTCTGGCCAACCG 58.332 61.111 7.01 0.00 39.70 4.44
3690 4355 2.626780 GGTTCTTCTGGCCAACCGC 61.627 63.158 7.01 0.00 39.70 5.68
3691 4356 2.668212 TTCTTCTGGCCAACCGCG 60.668 61.111 7.01 0.00 39.70 6.46
3692 4357 3.171828 TTCTTCTGGCCAACCGCGA 62.172 57.895 8.23 0.00 39.70 5.87
3693 4358 3.423154 CTTCTGGCCAACCGCGAC 61.423 66.667 8.23 0.00 39.70 5.19
3694 4359 3.883744 CTTCTGGCCAACCGCGACT 62.884 63.158 8.23 0.00 39.70 4.18
3695 4360 2.501223 CTTCTGGCCAACCGCGACTA 62.501 60.000 8.23 0.00 39.70 2.59
3696 4361 2.047655 CTGGCCAACCGCGACTAA 60.048 61.111 8.23 0.00 39.70 2.24
3697 4362 1.669760 CTGGCCAACCGCGACTAAA 60.670 57.895 8.23 0.00 39.70 1.85
3698 4363 1.635663 CTGGCCAACCGCGACTAAAG 61.636 60.000 8.23 0.00 39.70 1.85
3699 4364 2.396157 GGCCAACCGCGACTAAAGG 61.396 63.158 8.23 1.23 38.94 3.11
3700 4365 3.035576 GCCAACCGCGACTAAAGGC 62.036 63.158 8.23 8.51 0.00 4.35
3701 4366 2.396157 CCAACCGCGACTAAAGGCC 61.396 63.158 8.23 0.00 0.00 5.19
3702 4367 2.433664 AACCGCGACTAAAGGCCG 60.434 61.111 8.23 0.00 0.00 6.13
3708 4373 3.195698 GACTAAAGGCCGCCGCAG 61.196 66.667 3.05 5.13 36.38 5.18
3723 4388 2.913777 CGCAGGTTTAGGGTTTTAGC 57.086 50.000 0.00 0.00 0.00 3.09
3724 4389 1.471287 CGCAGGTTTAGGGTTTTAGCC 59.529 52.381 0.00 0.00 35.59 3.93
3748 4413 3.808834 CCCCCTCTAAACCTGTTTTCT 57.191 47.619 0.00 0.00 34.23 2.52
3749 4414 3.421844 CCCCCTCTAAACCTGTTTTCTG 58.578 50.000 0.00 0.00 34.23 3.02
3750 4415 3.181433 CCCCCTCTAAACCTGTTTTCTGT 60.181 47.826 0.00 0.00 34.23 3.41
3751 4416 4.470602 CCCCTCTAAACCTGTTTTCTGTT 58.529 43.478 0.00 0.00 34.23 3.16
3752 4417 4.893524 CCCCTCTAAACCTGTTTTCTGTTT 59.106 41.667 0.00 0.00 34.23 2.83
3753 4418 6.066032 CCCCTCTAAACCTGTTTTCTGTTTA 58.934 40.000 0.00 0.00 34.23 2.01
3754 4419 6.548251 CCCCTCTAAACCTGTTTTCTGTTTAA 59.452 38.462 0.00 0.00 34.23 1.52
3755 4420 7.232737 CCCCTCTAAACCTGTTTTCTGTTTAAT 59.767 37.037 0.00 0.00 34.23 1.40
3756 4421 8.638873 CCCTCTAAACCTGTTTTCTGTTTAATT 58.361 33.333 0.00 0.00 34.23 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.472662 ATAAGGGAGGGGCGATGACG 61.473 60.000 0.00 0.00 42.93 4.35
1 2 0.321996 GATAAGGGAGGGGCGATGAC 59.678 60.000 0.00 0.00 0.00 3.06
6 7 2.523412 TCCGATAAGGGAGGGGCG 60.523 66.667 0.00 0.00 41.52 6.13
64 65 2.034812 GGTCCTATGGAGTCTTAGCACG 59.965 54.545 0.00 0.00 29.39 5.34
73 74 1.400737 GTACGCTGGTCCTATGGAGT 58.599 55.000 0.00 0.00 29.39 3.85
114 115 4.617808 TTCCGATCTACACTTCTCTTCG 57.382 45.455 0.00 0.00 0.00 3.79
121 122 5.360591 GTTGGATGATTCCGATCTACACTT 58.639 41.667 0.00 0.00 45.89 3.16
124 125 3.967326 AGGTTGGATGATTCCGATCTACA 59.033 43.478 0.00 0.00 44.03 2.74
137 138 2.749076 CCATGTGTGTACAGGTTGGATG 59.251 50.000 0.00 0.00 40.79 3.51
145 146 3.059884 GTCAGTGTCCATGTGTGTACAG 58.940 50.000 0.00 0.00 40.79 2.74
163 164 0.320946 GGATCCGGTTTCGTTGGTCA 60.321 55.000 0.00 0.00 33.95 4.02
167 168 0.947180 ACGTGGATCCGGTTTCGTTG 60.947 55.000 7.39 0.00 33.95 4.10
199 201 0.872388 GGATTCGGTCAGCGTTTGTT 59.128 50.000 0.00 0.00 0.00 2.83
202 204 0.035439 ATGGGATTCGGTCAGCGTTT 60.035 50.000 0.00 0.00 0.00 3.60
208 210 1.694150 GGATCTCATGGGATTCGGTCA 59.306 52.381 10.06 0.00 0.00 4.02
220 222 3.181461 GGTTTGTCTCCGATGGATCTCAT 60.181 47.826 0.00 0.00 39.13 2.90
221 223 2.168521 GGTTTGTCTCCGATGGATCTCA 59.831 50.000 0.00 0.00 0.00 3.27
222 224 2.432510 AGGTTTGTCTCCGATGGATCTC 59.567 50.000 0.00 0.00 0.00 2.75
227 229 3.460648 GGAGGTTTGTCTCCGATGG 57.539 57.895 0.00 0.00 43.19 3.51
274 277 6.276832 TGAAACTACCACTAATCTACGCTT 57.723 37.500 0.00 0.00 0.00 4.68
479 482 7.152645 CCCTTAAGCTTAGCGTAATCAAGATA 58.847 38.462 12.47 0.00 32.82 1.98
508 511 5.400188 CGCAAGAACACATTATATGCAATGG 59.600 40.000 0.00 0.00 38.88 3.16
524 529 7.899056 ATCTTTAGTAGATTCCCTCGCAAGAAC 60.899 40.741 0.00 0.00 43.56 3.01
602 608 6.463360 TGTGGGATTCTTTTCTATTTTTGGC 58.537 36.000 0.00 0.00 0.00 4.52
662 671 2.024414 GTGGAAATGGGTATGTGGCTC 58.976 52.381 0.00 0.00 0.00 4.70
663 672 1.640670 AGTGGAAATGGGTATGTGGCT 59.359 47.619 0.00 0.00 0.00 4.75
664 673 2.143876 AGTGGAAATGGGTATGTGGC 57.856 50.000 0.00 0.00 0.00 5.01
665 674 3.193267 CACAAGTGGAAATGGGTATGTGG 59.807 47.826 0.00 0.00 34.73 4.17
741 756 6.042143 GGAACATTTCTGTTTTCATGTGTGT 58.958 36.000 0.00 0.00 45.57 3.72
743 758 6.042143 GTGGAACATTTCTGTTTTCATGTGT 58.958 36.000 0.00 0.00 45.57 3.72
767 782 5.452078 AAATGGGCATATATTGTTGTCGG 57.548 39.130 0.00 0.00 0.00 4.79
795 810 6.980397 TGTTTCAGAAAAGAAAGGATTGCTTC 59.020 34.615 0.00 0.00 38.11 3.86
881 905 6.073003 GCACTTTATATAGCACCTGGATCAAC 60.073 42.308 0.00 0.00 0.00 3.18
985 1021 1.329913 TTCATGGCTGCCGAGCTAGA 61.330 55.000 14.98 2.47 45.44 2.43
986 1022 1.144716 TTCATGGCTGCCGAGCTAG 59.855 57.895 14.98 0.00 45.44 3.42
1251 1316 0.677288 ACTTGACGTCGTTGATGGGA 59.323 50.000 11.62 0.00 0.00 4.37
1367 1457 6.307318 GTGTAAGCAAAAGAAATCATCTGCTG 59.693 38.462 0.00 0.00 38.79 4.41
1399 1510 4.416516 TCTCCTCATCTACACCAACAAGA 58.583 43.478 0.00 0.00 0.00 3.02
1660 1785 3.923864 TGGAGCTTGACGCCGTGT 61.924 61.111 0.00 0.00 42.11 4.49
1879 2031 4.460731 AGCAGATTTTTAGGGAGTGAAAGC 59.539 41.667 0.00 0.00 0.00 3.51
1880 2032 7.106239 TCTAGCAGATTTTTAGGGAGTGAAAG 58.894 38.462 0.00 0.00 0.00 2.62
1891 2043 7.994425 TGGTCATGTTTCTAGCAGATTTTTA 57.006 32.000 0.00 0.00 0.00 1.52
1947 2099 5.630415 AGGGCATCTATACTTAAAGTGCA 57.370 39.130 0.00 0.00 33.05 4.57
2044 2260 5.888161 ACATCTCACTGAAACTGAAAACCTT 59.112 36.000 0.00 0.00 0.00 3.50
2183 2710 5.820947 ACGAGTTGGTCAAAGTACTGAAATT 59.179 36.000 0.00 0.00 0.00 1.82
2192 2719 2.288886 GCCTCTACGAGTTGGTCAAAGT 60.289 50.000 0.00 0.00 0.00 2.66
2460 3050 1.153086 GATCGTGGCATTGGGCTCT 60.153 57.895 0.00 0.00 44.01 4.09
2667 3260 3.799281 TTGGTTGTGGAGCAAGAAAAG 57.201 42.857 0.00 0.00 40.60 2.27
2706 3313 8.421784 AGAGTCAACCAATCGTGTATATATGTT 58.578 33.333 0.00 0.00 0.00 2.71
2848 3497 2.872245 ACGGTCAATGATTAGCCGATTG 59.128 45.455 20.87 0.00 44.57 2.67
2863 3512 3.375782 TCGACTATCTCGATACGGTCA 57.624 47.619 0.00 0.00 46.75 4.02
2890 3542 8.627208 AGCATCATCATAGTTATTTAACCCAG 57.373 34.615 0.00 0.00 36.88 4.45
3333 3998 3.081061 TCTGTTGTGTGTTTGAGTGCTT 58.919 40.909 0.00 0.00 0.00 3.91
3364 4029 1.628846 GAAGACCTCCTTGCCCTTGTA 59.371 52.381 0.00 0.00 34.68 2.41
3470 4135 0.260816 TCCCATACGACACTAGCCCT 59.739 55.000 0.00 0.00 0.00 5.19
3473 4138 1.108776 TGGTCCCATACGACACTAGC 58.891 55.000 0.00 0.00 34.24 3.42
3493 4158 1.070601 CAAAGGCCCTTTTTCCACCAG 59.929 52.381 5.84 0.00 30.60 4.00
3494 4159 1.127343 CAAAGGCCCTTTTTCCACCA 58.873 50.000 5.84 0.00 30.60 4.17
3495 4160 0.396435 CCAAAGGCCCTTTTTCCACC 59.604 55.000 5.84 0.00 30.60 4.61
3496 4161 1.070134 GACCAAAGGCCCTTTTTCCAC 59.930 52.381 5.84 0.00 30.60 4.02
3497 4162 1.419381 GACCAAAGGCCCTTTTTCCA 58.581 50.000 5.84 0.00 30.60 3.53
3498 4163 0.317160 CGACCAAAGGCCCTTTTTCC 59.683 55.000 5.84 0.00 30.60 3.13
3499 4164 0.319555 GCGACCAAAGGCCCTTTTTC 60.320 55.000 5.84 5.31 30.60 2.29
3500 4165 1.745890 GCGACCAAAGGCCCTTTTT 59.254 52.632 5.84 0.00 30.60 1.94
3501 4166 2.561037 CGCGACCAAAGGCCCTTTT 61.561 57.895 5.84 0.00 30.60 2.27
3502 4167 2.983592 CGCGACCAAAGGCCCTTT 60.984 61.111 1.93 1.93 33.58 3.11
3506 4171 3.733960 GAACCGCGACCAAAGGCC 61.734 66.667 8.23 0.00 0.00 5.19
3507 4172 4.084888 CGAACCGCGACCAAAGGC 62.085 66.667 8.23 0.00 44.57 4.35
3508 4173 4.084888 GCGAACCGCGACCAAAGG 62.085 66.667 8.23 0.00 44.55 3.11
3518 4183 0.096976 CTAATGGCAGTTGCGAACCG 59.903 55.000 0.00 0.00 43.26 4.44
3519 4184 1.130561 GACTAATGGCAGTTGCGAACC 59.869 52.381 0.00 0.00 43.26 3.62
3520 4185 1.201921 CGACTAATGGCAGTTGCGAAC 60.202 52.381 0.00 0.00 43.26 3.95
3521 4186 1.075542 CGACTAATGGCAGTTGCGAA 58.924 50.000 0.00 0.00 43.26 4.70
3522 4187 1.358725 GCGACTAATGGCAGTTGCGA 61.359 55.000 14.22 0.00 44.02 5.10
3523 4188 1.060937 GCGACTAATGGCAGTTGCG 59.939 57.895 0.00 0.70 44.02 4.85
3525 4190 1.019278 ACCGCGACTAATGGCAGTTG 61.019 55.000 8.23 0.00 33.66 3.16
3526 4191 0.321298 AACCGCGACTAATGGCAGTT 60.321 50.000 8.23 0.00 0.00 3.16
3527 4192 1.019278 CAACCGCGACTAATGGCAGT 61.019 55.000 8.23 0.00 0.00 4.40
3528 4193 1.715585 CAACCGCGACTAATGGCAG 59.284 57.895 8.23 0.00 0.00 4.85
3529 4194 2.395360 GCAACCGCGACTAATGGCA 61.395 57.895 8.23 0.00 0.00 4.92
3530 4195 2.403586 GCAACCGCGACTAATGGC 59.596 61.111 8.23 0.00 0.00 4.40
3548 4213 2.051345 CTGTTTGGTCGCGGTTGC 60.051 61.111 6.13 0.00 37.91 4.17
3549 4214 2.637025 CCTGTTTGGTCGCGGTTG 59.363 61.111 6.13 0.00 0.00 3.77
3550 4215 3.284449 GCCTGTTTGGTCGCGGTT 61.284 61.111 6.13 0.00 38.35 4.44
3555 4220 4.072088 GTCGCGCCTGTTTGGTCG 62.072 66.667 0.00 0.00 38.35 4.79
3556 4221 0.947180 TTAGTCGCGCCTGTTTGGTC 60.947 55.000 0.00 0.00 38.35 4.02
3557 4222 0.533308 TTTAGTCGCGCCTGTTTGGT 60.533 50.000 0.00 0.00 38.35 3.67
3558 4223 0.165944 CTTTAGTCGCGCCTGTTTGG 59.834 55.000 0.00 0.00 39.35 3.28
3559 4224 0.165944 CCTTTAGTCGCGCCTGTTTG 59.834 55.000 0.00 0.00 0.00 2.93
3560 4225 1.574702 GCCTTTAGTCGCGCCTGTTT 61.575 55.000 0.00 0.00 0.00 2.83
3561 4226 2.033194 GCCTTTAGTCGCGCCTGTT 61.033 57.895 0.00 0.00 0.00 3.16
3562 4227 2.434359 GCCTTTAGTCGCGCCTGT 60.434 61.111 0.00 0.00 0.00 4.00
3563 4228 3.195698 GGCCTTTAGTCGCGCCTG 61.196 66.667 0.00 0.00 38.41 4.85
3564 4229 4.468689 GGGCCTTTAGTCGCGCCT 62.469 66.667 0.84 0.00 41.35 5.52
3581 4246 1.743995 CAACCGCGACTAAAGGGGG 60.744 63.158 8.23 0.00 44.84 5.40
3582 4247 2.396157 GCAACCGCGACTAAAGGGG 61.396 63.158 8.23 0.00 45.85 4.79
3583 4248 0.953960 AAGCAACCGCGACTAAAGGG 60.954 55.000 8.23 0.00 45.49 3.95
3584 4249 1.717194 TAAGCAACCGCGACTAAAGG 58.283 50.000 8.23 0.00 45.49 3.11
3585 4250 2.991190 TCTTAAGCAACCGCGACTAAAG 59.009 45.455 8.23 1.88 45.49 1.85
3586 4251 3.029320 TCTTAAGCAACCGCGACTAAA 57.971 42.857 8.23 0.00 45.49 1.85
3587 4252 2.728690 TCTTAAGCAACCGCGACTAA 57.271 45.000 8.23 0.00 45.49 2.24
3588 4253 2.331194 GTTCTTAAGCAACCGCGACTA 58.669 47.619 8.23 0.00 45.49 2.59
3589 4254 1.145803 GTTCTTAAGCAACCGCGACT 58.854 50.000 8.23 0.00 45.49 4.18
3590 4255 0.165295 GGTTCTTAAGCAACCGCGAC 59.835 55.000 8.23 0.00 45.49 5.19
3591 4256 2.535588 GGTTCTTAAGCAACCGCGA 58.464 52.632 8.23 0.00 45.49 5.87
3595 4260 0.165295 GTCGCGGTTCTTAAGCAACC 59.835 55.000 19.09 19.09 40.12 3.77
3596 4261 1.145803 AGTCGCGGTTCTTAAGCAAC 58.854 50.000 6.13 3.71 0.00 4.17
3597 4262 2.728690 TAGTCGCGGTTCTTAAGCAA 57.271 45.000 6.13 0.00 0.00 3.91
3598 4263 2.728690 TTAGTCGCGGTTCTTAAGCA 57.271 45.000 6.13 0.00 0.00 3.91
3599 4264 2.347755 CCTTTAGTCGCGGTTCTTAAGC 59.652 50.000 6.13 0.00 0.00 3.09
3600 4265 2.347755 GCCTTTAGTCGCGGTTCTTAAG 59.652 50.000 6.13 11.57 0.00 1.85
3601 4266 2.340337 GCCTTTAGTCGCGGTTCTTAA 58.660 47.619 6.13 2.46 0.00 1.85
3602 4267 1.404583 GGCCTTTAGTCGCGGTTCTTA 60.405 52.381 6.13 0.00 0.00 2.10
3603 4268 0.672711 GGCCTTTAGTCGCGGTTCTT 60.673 55.000 6.13 0.00 0.00 2.52
3604 4269 1.079336 GGCCTTTAGTCGCGGTTCT 60.079 57.895 6.13 5.42 0.00 3.01
3605 4270 2.104859 GGGCCTTTAGTCGCGGTTC 61.105 63.158 6.13 0.00 0.00 3.62
3606 4271 2.046604 GGGCCTTTAGTCGCGGTT 60.047 61.111 6.13 0.00 0.00 4.44
3607 4272 4.446413 CGGGCCTTTAGTCGCGGT 62.446 66.667 6.13 0.00 35.43 5.68
3608 4273 4.446413 ACGGGCCTTTAGTCGCGG 62.446 66.667 6.13 0.00 41.92 6.46
3609 4274 2.884207 GACGGGCCTTTAGTCGCG 60.884 66.667 0.84 0.00 43.02 5.87
3610 4275 2.510918 GGACGGGCCTTTAGTCGC 60.511 66.667 0.84 0.00 35.87 5.19
3611 4276 1.447314 GTGGACGGGCCTTTAGTCG 60.447 63.158 0.84 0.00 37.63 4.18
3612 4277 1.447314 CGTGGACGGGCCTTTAGTC 60.447 63.158 0.84 7.66 37.63 2.59
3613 4278 2.212110 ACGTGGACGGGCCTTTAGT 61.212 57.895 0.84 0.00 44.95 2.24
3614 4279 1.740296 CACGTGGACGGGCCTTTAG 60.740 63.158 7.95 0.00 44.95 1.85
3615 4280 2.344500 CACGTGGACGGGCCTTTA 59.656 61.111 7.95 0.00 44.95 1.85
3616 4281 4.636435 CCACGTGGACGGGCCTTT 62.636 66.667 31.31 0.00 42.34 3.11
3648 4313 3.605412 TAAAGGTCCTCCGCCCCGA 62.605 63.158 0.00 0.00 39.05 5.14
3649 4314 3.078836 TAAAGGTCCTCCGCCCCG 61.079 66.667 0.00 0.00 39.05 5.73
3650 4315 1.969200 GACTAAAGGTCCTCCGCCCC 61.969 65.000 0.00 0.00 38.93 5.80
3651 4316 1.521141 GACTAAAGGTCCTCCGCCC 59.479 63.158 0.00 0.00 38.93 6.13
3652 4317 1.141234 CGACTAAAGGTCCTCCGCC 59.859 63.158 0.00 0.00 41.64 6.13
3653 4318 1.518792 GCGACTAAAGGTCCTCCGC 60.519 63.158 0.00 0.00 41.64 5.54
3654 4319 1.226603 CGCGACTAAAGGTCCTCCG 60.227 63.158 0.00 0.00 41.64 4.63
3655 4320 1.141234 CCGCGACTAAAGGTCCTCC 59.859 63.158 8.23 0.00 41.64 4.30
3656 4321 0.245813 AACCGCGACTAAAGGTCCTC 59.754 55.000 8.23 0.00 41.64 3.71
3657 4322 0.245813 GAACCGCGACTAAAGGTCCT 59.754 55.000 8.23 0.00 41.64 3.85
3658 4323 0.245813 AGAACCGCGACTAAAGGTCC 59.754 55.000 8.23 0.00 41.64 4.46
3659 4324 1.991264 GAAGAACCGCGACTAAAGGTC 59.009 52.381 8.23 0.00 37.26 3.85
3660 4325 1.617357 AGAAGAACCGCGACTAAAGGT 59.383 47.619 8.23 0.00 40.50 3.50
3661 4326 1.993370 CAGAAGAACCGCGACTAAAGG 59.007 52.381 8.23 0.00 0.00 3.11
3662 4327 1.993370 CCAGAAGAACCGCGACTAAAG 59.007 52.381 8.23 0.00 0.00 1.85
3663 4328 1.938016 GCCAGAAGAACCGCGACTAAA 60.938 52.381 8.23 0.00 0.00 1.85
3664 4329 0.389426 GCCAGAAGAACCGCGACTAA 60.389 55.000 8.23 0.00 0.00 2.24
3665 4330 1.214589 GCCAGAAGAACCGCGACTA 59.785 57.895 8.23 0.00 0.00 2.59
3666 4331 2.048127 GCCAGAAGAACCGCGACT 60.048 61.111 8.23 0.30 0.00 4.18
3667 4332 3.119096 GGCCAGAAGAACCGCGAC 61.119 66.667 8.23 0.00 0.00 5.19
3668 4333 3.171828 TTGGCCAGAAGAACCGCGA 62.172 57.895 8.23 0.00 0.00 5.87
3669 4334 2.668212 TTGGCCAGAAGAACCGCG 60.668 61.111 5.11 0.00 0.00 6.46
3670 4335 2.626780 GGTTGGCCAGAAGAACCGC 61.627 63.158 5.11 0.00 30.33 5.68
3671 4336 3.668386 GGTTGGCCAGAAGAACCG 58.332 61.111 5.11 0.00 30.33 4.44
3672 4337 2.626780 GCGGTTGGCCAGAAGAACC 61.627 63.158 12.82 12.82 36.55 3.62
3673 4338 2.954611 GCGGTTGGCCAGAAGAAC 59.045 61.111 5.11 0.00 34.80 3.01
3674 4339 2.668212 CGCGGTTGGCCAGAAGAA 60.668 61.111 5.11 0.00 38.94 2.52
3675 4340 3.621805 TCGCGGTTGGCCAGAAGA 61.622 61.111 5.11 0.00 38.94 2.87
3676 4341 2.501223 TAGTCGCGGTTGGCCAGAAG 62.501 60.000 5.11 1.86 38.94 2.85
3677 4342 2.102109 TTAGTCGCGGTTGGCCAGAA 62.102 55.000 5.11 0.00 38.94 3.02
3678 4343 2.102109 TTTAGTCGCGGTTGGCCAGA 62.102 55.000 5.11 0.00 38.94 3.86
3679 4344 1.635663 CTTTAGTCGCGGTTGGCCAG 61.636 60.000 5.11 0.00 38.94 4.85
3680 4345 1.669760 CTTTAGTCGCGGTTGGCCA 60.670 57.895 0.00 0.00 38.94 5.36
3681 4346 2.396157 CCTTTAGTCGCGGTTGGCC 61.396 63.158 6.13 0.00 38.94 5.36
3682 4347 3.035576 GCCTTTAGTCGCGGTTGGC 62.036 63.158 6.13 8.44 38.69 4.52
3683 4348 2.396157 GGCCTTTAGTCGCGGTTGG 61.396 63.158 6.13 1.60 0.00 3.77
3684 4349 2.736682 CGGCCTTTAGTCGCGGTTG 61.737 63.158 6.13 0.00 0.00 3.77
3685 4350 2.433664 CGGCCTTTAGTCGCGGTT 60.434 61.111 6.13 0.00 0.00 4.44
3691 4356 3.195698 CTGCGGCGGCCTTTAGTC 61.196 66.667 18.34 0.00 38.85 2.59
3692 4357 4.778143 CCTGCGGCGGCCTTTAGT 62.778 66.667 18.34 0.00 38.85 2.24
3693 4358 4.778143 ACCTGCGGCGGCCTTTAG 62.778 66.667 18.34 11.71 38.85 1.85
3694 4359 2.466523 TAAACCTGCGGCGGCCTTTA 62.467 55.000 18.34 11.46 38.85 1.85
3695 4360 3.853698 TAAACCTGCGGCGGCCTTT 62.854 57.895 18.34 12.48 38.85 3.11
3696 4361 4.338710 TAAACCTGCGGCGGCCTT 62.339 61.111 18.34 5.80 38.85 4.35
3697 4362 4.778143 CTAAACCTGCGGCGGCCT 62.778 66.667 18.34 0.00 38.85 5.19
3700 4365 3.912745 AACCCTAAACCTGCGGCGG 62.913 63.158 9.78 0.65 0.00 6.13
3701 4366 1.520600 AAAACCCTAAACCTGCGGCG 61.521 55.000 0.51 0.51 0.00 6.46
3702 4367 1.471287 CTAAAACCCTAAACCTGCGGC 59.529 52.381 0.00 0.00 0.00 6.53
3703 4368 1.471287 GCTAAAACCCTAAACCTGCGG 59.529 52.381 0.00 0.00 0.00 5.69
3704 4369 1.471287 GGCTAAAACCCTAAACCTGCG 59.529 52.381 0.00 0.00 0.00 5.18
3728 4393 3.181433 ACAGAAAACAGGTTTAGAGGGGG 60.181 47.826 0.00 0.00 31.63 5.40
3729 4394 4.100279 ACAGAAAACAGGTTTAGAGGGG 57.900 45.455 0.00 0.00 31.63 4.79
3730 4395 7.576861 TTAAACAGAAAACAGGTTTAGAGGG 57.423 36.000 0.00 0.00 38.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.