Multiple sequence alignment - TraesCS3B01G567300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G567300 chr3B 100.000 2657 0 0 1 2657 798685704 798688360 0.000000e+00 4907.0
1 TraesCS3B01G567300 chr3B 92.712 837 55 6 808 1642 798648155 798648987 0.000000e+00 1203.0
2 TraesCS3B01G567300 chr3B 90.000 730 64 4 868 1594 798979566 798980289 0.000000e+00 935.0
3 TraesCS3B01G567300 chr3B 85.207 338 43 6 108 441 127331663 127331997 9.110000e-90 340.0
4 TraesCS3B01G567300 chr3B 88.316 291 19 8 441 725 798647683 798647964 4.240000e-88 335.0
5 TraesCS3B01G567300 chr3B 80.087 462 59 15 11 443 28831955 28832412 1.990000e-81 313.0
6 TraesCS3B01G567300 chr3B 89.815 108 10 1 1 107 123573330 123573223 1.280000e-28 137.0
7 TraesCS3B01G567300 chr6B 97.324 1009 25 2 1651 2657 106470509 106471517 0.000000e+00 1712.0
8 TraesCS3B01G567300 chr6B 95.163 1013 41 6 1652 2657 172987059 172988070 0.000000e+00 1592.0
9 TraesCS3B01G567300 chr6B 73.663 243 49 13 108 341 66747699 66747935 2.190000e-11 80.5
10 TraesCS3B01G567300 chr7A 96.531 1009 32 3 1652 2657 49898273 49899281 0.000000e+00 1666.0
11 TraesCS3B01G567300 chr7A 89.815 108 10 1 1 107 635077707 635077814 1.280000e-28 137.0
12 TraesCS3B01G567300 chr5A 96.047 1012 37 3 1648 2657 657401644 657400634 0.000000e+00 1644.0
13 TraesCS3B01G567300 chr5A 84.165 461 40 13 6 437 110110713 110111169 1.470000e-112 416.0
14 TraesCS3B01G567300 chr4A 96.135 1009 35 4 1651 2657 743745289 743746295 0.000000e+00 1644.0
15 TraesCS3B01G567300 chr3D 91.297 1218 80 12 441 1654 595738634 595739829 0.000000e+00 1639.0
16 TraesCS3B01G567300 chr3D 90.894 1186 94 7 442 1621 595704791 595705968 0.000000e+00 1580.0
17 TraesCS3B01G567300 chr3D 89.133 911 93 5 743 1651 595674232 595675138 0.000000e+00 1129.0
18 TraesCS3B01G567300 chr3D 90.092 868 81 2 765 1628 595302940 595303806 0.000000e+00 1122.0
19 TraesCS3B01G567300 chr3D 88.968 698 73 3 942 1636 595286611 595285915 0.000000e+00 859.0
20 TraesCS3B01G567300 chr3D 84.389 442 40 13 460 880 595287060 595286627 8.850000e-110 407.0
21 TraesCS3B01G567300 chr3D 89.172 314 23 4 441 751 595673778 595674083 5.370000e-102 381.0
22 TraesCS3B01G567300 chr3D 81.607 473 53 16 1 441 359313714 359314184 6.990000e-96 361.0
23 TraesCS3B01G567300 chr3D 85.417 336 37 7 441 767 595302428 595302760 3.280000e-89 339.0
24 TraesCS3B01G567300 chr3D 88.393 112 12 1 1 111 608236177 608236288 1.660000e-27 134.0
25 TraesCS3B01G567300 chr3D 88.462 104 10 2 1 102 581481747 581481850 9.990000e-25 124.0
26 TraesCS3B01G567300 chr3D 87.037 108 13 1 1 107 416427875 416427768 1.290000e-23 121.0
27 TraesCS3B01G567300 chr3D 78.873 213 19 8 435 630 596111481 596111278 1.290000e-23 121.0
28 TraesCS3B01G567300 chr3A 90.998 1222 88 12 441 1654 726515250 726516457 0.000000e+00 1628.0
29 TraesCS3B01G567300 chr3A 95.328 1006 41 5 1653 2655 726545762 726546764 0.000000e+00 1592.0
30 TraesCS3B01G567300 chr3A 91.572 1056 86 2 579 1632 726457920 726458974 0.000000e+00 1454.0
31 TraesCS3B01G567300 chr3A 84.140 1198 133 30 460 1636 726411270 726410109 0.000000e+00 1107.0
32 TraesCS3B01G567300 chr3A 83.120 468 46 18 1 437 741875148 741874683 1.920000e-106 396.0
33 TraesCS3B01G567300 chr3A 94.521 73 4 0 441 513 726457833 726457905 2.160000e-21 113.0
34 TraesCS3B01G567300 chr6A 95.738 1009 34 8 1652 2657 49764780 49763778 0.000000e+00 1616.0
35 TraesCS3B01G567300 chr5B 95.347 1010 39 6 1652 2657 696488181 696487176 0.000000e+00 1598.0
36 TraesCS3B01G567300 chr2B 94.862 1012 45 7 1651 2657 39774610 39773601 0.000000e+00 1574.0
37 TraesCS3B01G567300 chr2B 83.547 468 47 14 2 441 385190492 385190957 6.850000e-111 411.0
38 TraesCS3B01G567300 chr2B 81.410 468 51 12 1 437 468233646 468234108 1.510000e-92 350.0
39 TraesCS3B01G567300 chr2B 89.286 112 11 1 1 111 74213140 74213029 3.570000e-29 139.0
40 TraesCS3B01G567300 chr6D 84.914 464 35 16 6 440 369665631 369665174 1.130000e-118 436.0
41 TraesCS3B01G567300 chr6D 87.611 339 34 6 108 441 437999100 437999435 1.150000e-103 387.0
42 TraesCS3B01G567300 chr6D 87.500 112 12 2 1 111 10693691 10693801 7.720000e-26 128.0
43 TraesCS3B01G567300 chr7D 84.043 470 41 10 1 441 634586782 634586318 3.160000e-114 422.0
44 TraesCS3B01G567300 chr7D 91.667 108 8 1 1 107 369937530 369937423 5.930000e-32 148.0
45 TraesCS3B01G567300 chr7D 92.405 79 6 0 20 98 586785717 586785795 2.160000e-21 113.0
46 TraesCS3B01G567300 chr7B 89.970 329 30 3 111 437 203018350 203018023 3.160000e-114 422.0
47 TraesCS3B01G567300 chr7B 78.947 247 48 4 135 377 64883721 64883475 5.880000e-37 165.0
48 TraesCS3B01G567300 chr7B 94.898 98 4 1 1 97 105940222 105940319 4.580000e-33 152.0
49 TraesCS3B01G567300 chr7B 89.286 112 11 1 1 111 533793676 533793565 3.570000e-29 139.0
50 TraesCS3B01G567300 chr7B 89.286 112 11 1 1 111 592185531 592185420 3.570000e-29 139.0
51 TraesCS3B01G567300 chr1D 80.213 470 36 19 1 441 6807180 6807621 1.550000e-77 300.0
52 TraesCS3B01G567300 chr1D 90.909 88 8 0 13 100 9385315 9385228 4.650000e-23 119.0
53 TraesCS3B01G567300 chr1B 81.173 324 53 5 119 437 165549723 165550043 1.220000e-63 254.0
54 TraesCS3B01G567300 chr1B 89.286 112 11 1 1 111 662062708 662062819 3.570000e-29 139.0
55 TraesCS3B01G567300 chr1B 88.393 112 12 1 1 111 647932431 647932320 1.660000e-27 134.0
56 TraesCS3B01G567300 chr1B 87.611 113 12 2 1 111 100816014 100815902 2.150000e-26 130.0
57 TraesCS3B01G567300 chr4B 82.746 284 44 4 129 409 4092082 4092363 5.680000e-62 248.0
58 TraesCS3B01G567300 chr4B 100.000 29 0 0 67 95 4120277 4120305 1.000000e-03 54.7
59 TraesCS3B01G567300 chr5D 91.304 92 8 0 9 100 394265888 394265797 2.780000e-25 126.0
60 TraesCS3B01G567300 chr5D 85.185 108 15 1 1 107 524119460 524119567 2.800000e-20 110.0
61 TraesCS3B01G567300 chrUn 89.796 98 9 1 2 98 35060429 35060332 9.990000e-25 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G567300 chr3B 798685704 798688360 2656 False 4907.0 4907 100.0000 1 2657 1 chr3B.!!$F3 2656
1 TraesCS3B01G567300 chr3B 798979566 798980289 723 False 935.0 935 90.0000 868 1594 1 chr3B.!!$F4 726
2 TraesCS3B01G567300 chr3B 798647683 798648987 1304 False 769.0 1203 90.5140 441 1642 2 chr3B.!!$F5 1201
3 TraesCS3B01G567300 chr6B 106470509 106471517 1008 False 1712.0 1712 97.3240 1651 2657 1 chr6B.!!$F2 1006
4 TraesCS3B01G567300 chr6B 172987059 172988070 1011 False 1592.0 1592 95.1630 1652 2657 1 chr6B.!!$F3 1005
5 TraesCS3B01G567300 chr7A 49898273 49899281 1008 False 1666.0 1666 96.5310 1652 2657 1 chr7A.!!$F1 1005
6 TraesCS3B01G567300 chr5A 657400634 657401644 1010 True 1644.0 1644 96.0470 1648 2657 1 chr5A.!!$R1 1009
7 TraesCS3B01G567300 chr4A 743745289 743746295 1006 False 1644.0 1644 96.1350 1651 2657 1 chr4A.!!$F1 1006
8 TraesCS3B01G567300 chr3D 595738634 595739829 1195 False 1639.0 1639 91.2970 441 1654 1 chr3D.!!$F4 1213
9 TraesCS3B01G567300 chr3D 595704791 595705968 1177 False 1580.0 1580 90.8940 442 1621 1 chr3D.!!$F3 1179
10 TraesCS3B01G567300 chr3D 595673778 595675138 1360 False 755.0 1129 89.1525 441 1651 2 chr3D.!!$F7 1210
11 TraesCS3B01G567300 chr3D 595302428 595303806 1378 False 730.5 1122 87.7545 441 1628 2 chr3D.!!$F6 1187
12 TraesCS3B01G567300 chr3D 595285915 595287060 1145 True 633.0 859 86.6785 460 1636 2 chr3D.!!$R3 1176
13 TraesCS3B01G567300 chr3A 726515250 726516457 1207 False 1628.0 1628 90.9980 441 1654 1 chr3A.!!$F1 1213
14 TraesCS3B01G567300 chr3A 726545762 726546764 1002 False 1592.0 1592 95.3280 1653 2655 1 chr3A.!!$F2 1002
15 TraesCS3B01G567300 chr3A 726410109 726411270 1161 True 1107.0 1107 84.1400 460 1636 1 chr3A.!!$R1 1176
16 TraesCS3B01G567300 chr3A 726457833 726458974 1141 False 783.5 1454 93.0465 441 1632 2 chr3A.!!$F3 1191
17 TraesCS3B01G567300 chr6A 49763778 49764780 1002 True 1616.0 1616 95.7380 1652 2657 1 chr6A.!!$R1 1005
18 TraesCS3B01G567300 chr5B 696487176 696488181 1005 True 1598.0 1598 95.3470 1652 2657 1 chr5B.!!$R1 1005
19 TraesCS3B01G567300 chr2B 39773601 39774610 1009 True 1574.0 1574 94.8620 1651 2657 1 chr2B.!!$R1 1006

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
84 85 0.035056 AGAAATCCCTGTCGGCTTGG 60.035 55.0 0.0 0.0 0.0 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1991 2559 0.244178 GACCGGCGAGAGAGAAAACT 59.756 55.0 9.3 0.0 0.0 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.215568 TTGGTGGCGGCAAGTGTG 61.216 61.111 15.50 0.00 0.00 3.82
20 21 3.964875 GTGGCGGCAAGTGTGGTG 61.965 66.667 15.50 0.00 0.00 4.17
22 23 4.947147 GGCGGCAAGTGTGGTGGA 62.947 66.667 3.07 0.00 0.00 4.02
23 24 3.357079 GCGGCAAGTGTGGTGGAG 61.357 66.667 0.00 0.00 0.00 3.86
24 25 3.357079 CGGCAAGTGTGGTGGAGC 61.357 66.667 0.00 0.00 0.00 4.70
25 26 3.357079 GGCAAGTGTGGTGGAGCG 61.357 66.667 0.00 0.00 0.00 5.03
26 27 4.030452 GCAAGTGTGGTGGAGCGC 62.030 66.667 0.00 0.00 0.00 5.92
27 28 3.716006 CAAGTGTGGTGGAGCGCG 61.716 66.667 0.00 0.00 0.00 6.86
28 29 3.923864 AAGTGTGGTGGAGCGCGA 61.924 61.111 12.10 0.00 0.00 5.87
29 30 4.664677 AGTGTGGTGGAGCGCGAC 62.665 66.667 12.10 1.97 0.00 5.19
44 45 4.203076 GACGGATCGGTCGGGGTG 62.203 72.222 16.53 0.00 0.00 4.61
47 48 4.157120 GGATCGGTCGGGGTGGTG 62.157 72.222 0.00 0.00 0.00 4.17
48 49 4.157120 GATCGGTCGGGGTGGTGG 62.157 72.222 0.00 0.00 0.00 4.61
53 54 4.636435 GTCGGGGTGGTGGGTGTG 62.636 72.222 0.00 0.00 0.00 3.82
55 56 4.947147 CGGGGTGGTGGGTGTGTG 62.947 72.222 0.00 0.00 0.00 3.82
56 57 4.596585 GGGGTGGTGGGTGTGTGG 62.597 72.222 0.00 0.00 0.00 4.17
68 69 3.998672 GTGTGGCGGACGGGAGAA 61.999 66.667 0.00 0.00 0.00 2.87
69 70 3.235481 TGTGGCGGACGGGAGAAA 61.235 61.111 0.00 0.00 0.00 2.52
70 71 2.267961 GTGGCGGACGGGAGAAAT 59.732 61.111 0.00 0.00 0.00 2.17
71 72 1.814169 GTGGCGGACGGGAGAAATC 60.814 63.158 0.00 0.00 0.00 2.17
72 73 2.203029 GGCGGACGGGAGAAATCC 60.203 66.667 0.00 0.00 0.00 3.01
73 74 2.203029 GCGGACGGGAGAAATCCC 60.203 66.667 3.03 3.03 46.43 3.85
80 81 1.153147 GGGAGAAATCCCTGTCGGC 60.153 63.158 6.05 0.00 46.39 5.54
81 82 1.627297 GGGAGAAATCCCTGTCGGCT 61.627 60.000 6.05 0.00 46.39 5.52
82 83 0.253327 GGAGAAATCCCTGTCGGCTT 59.747 55.000 0.00 0.00 0.00 4.35
83 84 1.373570 GAGAAATCCCTGTCGGCTTG 58.626 55.000 0.00 0.00 0.00 4.01
84 85 0.035056 AGAAATCCCTGTCGGCTTGG 60.035 55.000 0.00 0.00 0.00 3.61
85 86 1.657751 GAAATCCCTGTCGGCTTGGC 61.658 60.000 0.00 0.00 0.00 4.52
86 87 3.645268 AATCCCTGTCGGCTTGGCC 62.645 63.158 0.00 0.00 46.75 5.36
118 119 3.974757 GGCGCCGGCGTCTAGTAT 61.975 66.667 45.02 0.00 41.28 2.12
119 120 2.428735 GCGCCGGCGTCTAGTATC 60.429 66.667 45.02 25.23 42.09 2.24
120 121 2.254651 CGCCGGCGTCTAGTATCC 59.745 66.667 39.71 0.00 34.35 2.59
121 122 2.649614 GCCGGCGTCTAGTATCCC 59.350 66.667 12.58 0.00 0.00 3.85
122 123 2.928741 GCCGGCGTCTAGTATCCCC 61.929 68.421 12.58 0.00 0.00 4.81
123 124 1.228490 CCGGCGTCTAGTATCCCCT 60.228 63.158 6.01 0.00 0.00 4.79
124 125 1.242665 CCGGCGTCTAGTATCCCCTC 61.243 65.000 6.01 0.00 0.00 4.30
125 126 0.536687 CGGCGTCTAGTATCCCCTCA 60.537 60.000 0.00 0.00 0.00 3.86
126 127 0.960286 GGCGTCTAGTATCCCCTCAC 59.040 60.000 0.00 0.00 0.00 3.51
127 128 0.960286 GCGTCTAGTATCCCCTCACC 59.040 60.000 0.00 0.00 0.00 4.02
128 129 1.618487 CGTCTAGTATCCCCTCACCC 58.382 60.000 0.00 0.00 0.00 4.61
129 130 1.133575 CGTCTAGTATCCCCTCACCCA 60.134 57.143 0.00 0.00 0.00 4.51
130 131 2.491086 CGTCTAGTATCCCCTCACCCAT 60.491 54.545 0.00 0.00 0.00 4.00
131 132 2.900546 GTCTAGTATCCCCTCACCCATG 59.099 54.545 0.00 0.00 0.00 3.66
132 133 1.625818 CTAGTATCCCCTCACCCATGC 59.374 57.143 0.00 0.00 0.00 4.06
133 134 1.062488 AGTATCCCCTCACCCATGCC 61.062 60.000 0.00 0.00 0.00 4.40
134 135 1.774217 TATCCCCTCACCCATGCCC 60.774 63.158 0.00 0.00 0.00 5.36
137 138 3.813724 CCCTCACCCATGCCCCTC 61.814 72.222 0.00 0.00 0.00 4.30
138 139 3.813724 CCTCACCCATGCCCCTCC 61.814 72.222 0.00 0.00 0.00 4.30
139 140 3.016971 CTCACCCATGCCCCTCCA 61.017 66.667 0.00 0.00 0.00 3.86
140 141 3.338250 TCACCCATGCCCCTCCAC 61.338 66.667 0.00 0.00 0.00 4.02
141 142 3.660571 CACCCATGCCCCTCCACA 61.661 66.667 0.00 0.00 0.00 4.17
142 143 2.618185 ACCCATGCCCCTCCACAT 60.618 61.111 0.00 0.00 0.00 3.21
143 144 1.308657 ACCCATGCCCCTCCACATA 60.309 57.895 0.00 0.00 0.00 2.29
144 145 1.151450 CCCATGCCCCTCCACATAC 59.849 63.158 0.00 0.00 0.00 2.39
145 146 1.151450 CCATGCCCCTCCACATACC 59.849 63.158 0.00 0.00 0.00 2.73
146 147 1.227943 CATGCCCCTCCACATACCG 60.228 63.158 0.00 0.00 0.00 4.02
147 148 2.452064 ATGCCCCTCCACATACCGG 61.452 63.158 0.00 0.00 0.00 5.28
148 149 3.873812 GCCCCTCCACATACCGGG 61.874 72.222 6.32 0.00 36.78 5.73
150 151 3.168528 CCCTCCACATACCGGGGG 61.169 72.222 6.32 0.00 44.78 5.40
152 153 4.060065 CTCCACATACCGGGGGAA 57.940 61.111 6.32 0.00 0.00 3.97
153 154 2.303043 CTCCACATACCGGGGGAAA 58.697 57.895 6.32 0.00 0.00 3.13
154 155 0.843984 CTCCACATACCGGGGGAAAT 59.156 55.000 6.32 0.00 0.00 2.17
155 156 0.841289 TCCACATACCGGGGGAAATC 59.159 55.000 6.32 0.00 0.00 2.17
156 157 0.179001 CCACATACCGGGGGAAATCC 60.179 60.000 6.32 0.00 0.00 3.01
157 158 0.843984 CACATACCGGGGGAAATCCT 59.156 55.000 6.32 0.00 35.95 3.24
158 159 2.051692 CACATACCGGGGGAAATCCTA 58.948 52.381 6.32 0.00 35.95 2.94
159 160 2.038557 CACATACCGGGGGAAATCCTAG 59.961 54.545 6.32 0.00 35.95 3.02
160 161 1.628846 CATACCGGGGGAAATCCTAGG 59.371 57.143 6.32 0.82 37.79 3.02
161 162 0.943479 TACCGGGGGAAATCCTAGGA 59.057 55.000 15.46 15.46 36.43 2.94
162 163 0.693430 ACCGGGGGAAATCCTAGGAC 60.693 60.000 15.42 0.71 36.43 3.85
163 164 0.400093 CCGGGGGAAATCCTAGGACT 60.400 60.000 15.42 0.00 35.23 3.85
164 165 1.132945 CCGGGGGAAATCCTAGGACTA 60.133 57.143 15.42 0.00 35.23 2.59
165 166 2.249139 CGGGGGAAATCCTAGGACTAG 58.751 57.143 15.42 0.00 35.95 2.57
166 167 2.425975 CGGGGGAAATCCTAGGACTAGT 60.426 54.545 15.42 0.00 35.95 2.57
167 168 3.241156 GGGGGAAATCCTAGGACTAGTC 58.759 54.545 15.42 14.87 35.95 2.59
168 169 3.116668 GGGGGAAATCCTAGGACTAGTCT 60.117 52.174 21.88 10.81 35.95 3.24
169 170 3.898741 GGGGAAATCCTAGGACTAGTCTG 59.101 52.174 21.88 12.24 35.95 3.51
170 171 3.898741 GGGAAATCCTAGGACTAGTCTGG 59.101 52.174 21.88 19.48 35.95 3.86
171 172 3.898741 GGAAATCCTAGGACTAGTCTGGG 59.101 52.174 21.88 19.09 34.64 4.45
172 173 2.687003 ATCCTAGGACTAGTCTGGGC 57.313 55.000 21.88 5.83 33.54 5.36
173 174 1.305886 TCCTAGGACTAGTCTGGGCA 58.694 55.000 21.88 9.14 33.54 5.36
174 175 1.215673 TCCTAGGACTAGTCTGGGCAG 59.784 57.143 21.88 11.44 33.54 4.85
175 176 1.036707 CTAGGACTAGTCTGGGCAGC 58.963 60.000 21.88 4.01 0.00 5.25
176 177 0.335019 TAGGACTAGTCTGGGCAGCA 59.665 55.000 21.88 0.00 0.00 4.41
177 178 0.975040 AGGACTAGTCTGGGCAGCAG 60.975 60.000 21.88 0.00 0.00 4.24
178 179 1.153469 GACTAGTCTGGGCAGCAGC 60.153 63.158 15.91 0.00 41.10 5.25
179 180 2.202851 CTAGTCTGGGCAGCAGCG 60.203 66.667 0.00 0.00 43.41 5.18
180 181 2.997315 TAGTCTGGGCAGCAGCGT 60.997 61.111 0.00 0.00 43.41 5.07
181 182 2.897641 CTAGTCTGGGCAGCAGCGTC 62.898 65.000 0.00 0.00 43.41 5.19
187 188 3.121030 GGCAGCAGCGTCGTCATT 61.121 61.111 0.00 0.00 43.41 2.57
188 189 2.097160 GCAGCAGCGTCGTCATTG 59.903 61.111 0.00 0.00 0.00 2.82
189 190 2.671177 GCAGCAGCGTCGTCATTGT 61.671 57.895 0.00 0.00 0.00 2.71
190 191 1.417592 CAGCAGCGTCGTCATTGTC 59.582 57.895 0.00 0.00 0.00 3.18
191 192 2.088763 AGCAGCGTCGTCATTGTCG 61.089 57.895 0.00 0.00 0.00 4.35
192 193 2.372690 GCAGCGTCGTCATTGTCGT 61.373 57.895 3.38 0.00 0.00 4.34
193 194 1.412226 CAGCGTCGTCATTGTCGTG 59.588 57.895 3.38 0.00 0.00 4.35
194 195 1.007734 AGCGTCGTCATTGTCGTGT 60.008 52.632 3.38 0.00 0.00 4.49
195 196 0.596600 AGCGTCGTCATTGTCGTGTT 60.597 50.000 3.38 0.00 0.00 3.32
196 197 1.054574 GCGTCGTCATTGTCGTGTTA 58.945 50.000 3.38 0.00 0.00 2.41
197 198 1.201629 GCGTCGTCATTGTCGTGTTAC 60.202 52.381 3.38 0.00 0.00 2.50
198 199 2.313234 CGTCGTCATTGTCGTGTTACT 58.687 47.619 3.38 0.00 0.00 2.24
199 200 2.722629 CGTCGTCATTGTCGTGTTACTT 59.277 45.455 3.38 0.00 0.00 2.24
200 201 3.181556 CGTCGTCATTGTCGTGTTACTTC 60.182 47.826 3.38 0.00 0.00 3.01
201 202 3.120782 GTCGTCATTGTCGTGTTACTTCC 59.879 47.826 3.38 0.00 0.00 3.46
202 203 3.005050 TCGTCATTGTCGTGTTACTTCCT 59.995 43.478 3.38 0.00 0.00 3.36
203 204 3.121279 CGTCATTGTCGTGTTACTTCCTG 59.879 47.826 0.00 0.00 0.00 3.86
204 205 4.304110 GTCATTGTCGTGTTACTTCCTGA 58.696 43.478 0.00 0.00 0.00 3.86
205 206 4.748102 GTCATTGTCGTGTTACTTCCTGAA 59.252 41.667 0.00 0.00 0.00 3.02
206 207 4.988540 TCATTGTCGTGTTACTTCCTGAAG 59.011 41.667 5.37 5.37 43.79 3.02
207 208 3.380479 TGTCGTGTTACTTCCTGAAGG 57.620 47.619 11.34 0.00 42.53 3.46
208 209 2.696707 TGTCGTGTTACTTCCTGAAGGT 59.303 45.455 11.34 0.69 42.53 3.50
209 210 3.057734 GTCGTGTTACTTCCTGAAGGTG 58.942 50.000 11.34 0.00 42.53 4.00
210 211 2.696707 TCGTGTTACTTCCTGAAGGTGT 59.303 45.455 11.34 1.22 42.53 4.16
211 212 3.133362 TCGTGTTACTTCCTGAAGGTGTT 59.867 43.478 11.34 0.00 42.53 3.32
212 213 3.247648 CGTGTTACTTCCTGAAGGTGTTG 59.752 47.826 11.34 0.00 42.53 3.33
213 214 3.003378 GTGTTACTTCCTGAAGGTGTTGC 59.997 47.826 11.34 0.00 42.53 4.17
214 215 3.118038 TGTTACTTCCTGAAGGTGTTGCT 60.118 43.478 11.34 0.00 42.53 3.91
215 216 2.736670 ACTTCCTGAAGGTGTTGCTT 57.263 45.000 11.34 0.00 42.53 3.91
216 217 2.301346 ACTTCCTGAAGGTGTTGCTTG 58.699 47.619 11.34 0.00 42.53 4.01
217 218 1.610522 CTTCCTGAAGGTGTTGCTTGG 59.389 52.381 0.00 0.00 34.87 3.61
218 219 0.550914 TCCTGAAGGTGTTGCTTGGT 59.449 50.000 0.00 0.00 36.34 3.67
219 220 1.771854 TCCTGAAGGTGTTGCTTGGTA 59.228 47.619 0.00 0.00 36.34 3.25
220 221 2.375174 TCCTGAAGGTGTTGCTTGGTAT 59.625 45.455 0.00 0.00 36.34 2.73
221 222 2.489329 CCTGAAGGTGTTGCTTGGTATG 59.511 50.000 0.00 0.00 0.00 2.39
222 223 3.149196 CTGAAGGTGTTGCTTGGTATGT 58.851 45.455 0.00 0.00 0.00 2.29
223 224 2.884012 TGAAGGTGTTGCTTGGTATGTG 59.116 45.455 0.00 0.00 0.00 3.21
224 225 1.909700 AGGTGTTGCTTGGTATGTGG 58.090 50.000 0.00 0.00 0.00 4.17
225 226 1.144913 AGGTGTTGCTTGGTATGTGGT 59.855 47.619 0.00 0.00 0.00 4.16
226 227 1.269448 GGTGTTGCTTGGTATGTGGTG 59.731 52.381 0.00 0.00 0.00 4.17
227 228 1.269448 GTGTTGCTTGGTATGTGGTGG 59.731 52.381 0.00 0.00 0.00 4.61
228 229 1.133637 TGTTGCTTGGTATGTGGTGGT 60.134 47.619 0.00 0.00 0.00 4.16
229 230 1.539827 GTTGCTTGGTATGTGGTGGTC 59.460 52.381 0.00 0.00 0.00 4.02
230 231 0.037590 TGCTTGGTATGTGGTGGTCC 59.962 55.000 0.00 0.00 0.00 4.46
231 232 1.024579 GCTTGGTATGTGGTGGTCCG 61.025 60.000 0.00 0.00 36.30 4.79
232 233 0.611200 CTTGGTATGTGGTGGTCCGA 59.389 55.000 0.00 0.00 36.30 4.55
233 234 1.002659 CTTGGTATGTGGTGGTCCGAA 59.997 52.381 0.00 0.00 36.30 4.30
234 235 0.611200 TGGTATGTGGTGGTCCGAAG 59.389 55.000 0.00 0.00 36.30 3.79
235 236 0.611714 GGTATGTGGTGGTCCGAAGT 59.388 55.000 0.00 0.00 36.30 3.01
236 237 1.674817 GGTATGTGGTGGTCCGAAGTG 60.675 57.143 0.00 0.00 36.30 3.16
237 238 0.036765 TATGTGGTGGTCCGAAGTGC 60.037 55.000 0.00 0.00 36.30 4.40
238 239 1.768684 ATGTGGTGGTCCGAAGTGCT 61.769 55.000 0.00 0.00 36.30 4.40
239 240 1.116536 TGTGGTGGTCCGAAGTGCTA 61.117 55.000 0.00 0.00 36.30 3.49
240 241 0.389948 GTGGTGGTCCGAAGTGCTAG 60.390 60.000 0.00 0.00 36.30 3.42
241 242 1.218316 GGTGGTCCGAAGTGCTAGG 59.782 63.158 0.00 0.00 0.00 3.02
242 243 1.255667 GGTGGTCCGAAGTGCTAGGA 61.256 60.000 0.00 0.00 0.00 2.94
243 244 0.173708 GTGGTCCGAAGTGCTAGGAG 59.826 60.000 0.00 0.00 34.29 3.69
244 245 0.251653 TGGTCCGAAGTGCTAGGAGT 60.252 55.000 0.00 0.00 34.29 3.85
245 246 0.173708 GGTCCGAAGTGCTAGGAGTG 59.826 60.000 0.00 0.00 34.29 3.51
246 247 0.889306 GTCCGAAGTGCTAGGAGTGT 59.111 55.000 0.00 0.00 34.29 3.55
247 248 0.888619 TCCGAAGTGCTAGGAGTGTG 59.111 55.000 0.00 0.00 0.00 3.82
248 249 0.603569 CCGAAGTGCTAGGAGTGTGT 59.396 55.000 0.00 0.00 0.00 3.72
249 250 1.670087 CCGAAGTGCTAGGAGTGTGTG 60.670 57.143 0.00 0.00 0.00 3.82
250 251 1.670087 CGAAGTGCTAGGAGTGTGTGG 60.670 57.143 0.00 0.00 0.00 4.17
251 252 1.618837 GAAGTGCTAGGAGTGTGTGGA 59.381 52.381 0.00 0.00 0.00 4.02
252 253 1.717032 AGTGCTAGGAGTGTGTGGAA 58.283 50.000 0.00 0.00 0.00 3.53
253 254 2.047061 AGTGCTAGGAGTGTGTGGAAA 58.953 47.619 0.00 0.00 0.00 3.13
254 255 2.639839 AGTGCTAGGAGTGTGTGGAAAT 59.360 45.455 0.00 0.00 0.00 2.17
255 256 3.003480 GTGCTAGGAGTGTGTGGAAATC 58.997 50.000 0.00 0.00 0.00 2.17
256 257 2.906389 TGCTAGGAGTGTGTGGAAATCT 59.094 45.455 0.00 0.00 0.00 2.40
257 258 3.055819 TGCTAGGAGTGTGTGGAAATCTC 60.056 47.826 0.00 0.00 0.00 2.75
258 259 3.680196 GCTAGGAGTGTGTGGAAATCTCC 60.680 52.174 0.00 0.00 43.29 3.71
259 260 1.276421 AGGAGTGTGTGGAAATCTCCG 59.724 52.381 0.00 0.00 45.85 4.63
260 261 1.676014 GGAGTGTGTGGAAATCTCCGG 60.676 57.143 0.00 0.00 45.85 5.14
261 262 1.275291 GAGTGTGTGGAAATCTCCGGA 59.725 52.381 2.93 2.93 45.85 5.14
262 263 1.697432 AGTGTGTGGAAATCTCCGGAA 59.303 47.619 5.23 0.00 45.85 4.30
263 264 2.076863 GTGTGTGGAAATCTCCGGAAG 58.923 52.381 5.23 0.00 45.85 3.46
287 288 3.114616 CGGCCGCGGATCATCATC 61.115 66.667 33.48 8.16 0.00 2.92
288 289 3.114616 GGCCGCGGATCATCATCG 61.115 66.667 33.48 0.00 0.00 3.84
289 290 2.356313 GCCGCGGATCATCATCGT 60.356 61.111 33.48 0.00 0.00 3.73
290 291 1.956170 GCCGCGGATCATCATCGTT 60.956 57.895 33.48 0.00 0.00 3.85
291 292 1.498865 GCCGCGGATCATCATCGTTT 61.499 55.000 33.48 0.00 0.00 3.60
292 293 0.937304 CCGCGGATCATCATCGTTTT 59.063 50.000 24.07 0.00 0.00 2.43
293 294 1.333169 CCGCGGATCATCATCGTTTTG 60.333 52.381 24.07 0.00 0.00 2.44
294 295 1.333169 CGCGGATCATCATCGTTTTGG 60.333 52.381 0.00 0.00 0.00 3.28
295 296 1.670811 GCGGATCATCATCGTTTTGGT 59.329 47.619 0.00 0.00 0.00 3.67
296 297 2.286418 GCGGATCATCATCGTTTTGGTC 60.286 50.000 0.00 0.00 0.00 4.02
297 298 2.033747 CGGATCATCATCGTTTTGGTCG 60.034 50.000 0.00 0.00 0.00 4.79
298 299 3.194861 GGATCATCATCGTTTTGGTCGA 58.805 45.455 0.00 0.00 41.45 4.20
299 300 3.809832 GGATCATCATCGTTTTGGTCGAT 59.190 43.478 0.00 0.00 46.70 3.59
300 301 4.084328 GGATCATCATCGTTTTGGTCGATC 60.084 45.833 0.00 0.00 44.49 3.69
301 302 3.194861 TCATCATCGTTTTGGTCGATCC 58.805 45.455 0.00 0.00 44.49 3.36
302 303 1.635844 TCATCGTTTTGGTCGATCCG 58.364 50.000 0.00 0.00 44.49 4.18
303 304 1.202817 TCATCGTTTTGGTCGATCCGA 59.797 47.619 0.00 0.00 44.49 4.55
314 315 1.530323 TCGATCCGACTCTGTTGTCA 58.470 50.000 0.00 0.00 36.82 3.58
315 316 2.092323 TCGATCCGACTCTGTTGTCAT 58.908 47.619 0.00 0.00 36.82 3.06
316 317 2.492088 TCGATCCGACTCTGTTGTCATT 59.508 45.455 0.00 0.00 36.82 2.57
317 318 3.692593 TCGATCCGACTCTGTTGTCATTA 59.307 43.478 0.00 0.00 36.82 1.90
318 319 4.038361 CGATCCGACTCTGTTGTCATTAG 58.962 47.826 0.00 0.00 36.82 1.73
319 320 4.438880 CGATCCGACTCTGTTGTCATTAGT 60.439 45.833 0.00 0.00 36.82 2.24
320 321 4.866508 TCCGACTCTGTTGTCATTAGTT 57.133 40.909 0.00 0.00 36.82 2.24
321 322 5.209818 TCCGACTCTGTTGTCATTAGTTT 57.790 39.130 0.00 0.00 36.82 2.66
322 323 5.227908 TCCGACTCTGTTGTCATTAGTTTC 58.772 41.667 0.00 0.00 36.82 2.78
323 324 5.010719 TCCGACTCTGTTGTCATTAGTTTCT 59.989 40.000 0.00 0.00 36.82 2.52
324 325 5.696724 CCGACTCTGTTGTCATTAGTTTCTT 59.303 40.000 0.00 0.00 36.82 2.52
325 326 6.202954 CCGACTCTGTTGTCATTAGTTTCTTT 59.797 38.462 0.00 0.00 36.82 2.52
326 327 7.254795 CCGACTCTGTTGTCATTAGTTTCTTTT 60.255 37.037 0.00 0.00 36.82 2.27
327 328 8.122952 CGACTCTGTTGTCATTAGTTTCTTTTT 58.877 33.333 0.00 0.00 36.82 1.94
357 358 4.329462 TTTTATTTCTTTTGGGCGTGCT 57.671 36.364 0.00 0.00 0.00 4.40
358 359 4.329462 TTTATTTCTTTTGGGCGTGCTT 57.671 36.364 0.00 0.00 0.00 3.91
359 360 2.153366 ATTTCTTTTGGGCGTGCTTG 57.847 45.000 0.00 0.00 0.00 4.01
360 361 0.820871 TTTCTTTTGGGCGTGCTTGT 59.179 45.000 0.00 0.00 0.00 3.16
361 362 0.102120 TTCTTTTGGGCGTGCTTGTG 59.898 50.000 0.00 0.00 0.00 3.33
362 363 1.034838 TCTTTTGGGCGTGCTTGTGT 61.035 50.000 0.00 0.00 0.00 3.72
363 364 0.179113 CTTTTGGGCGTGCTTGTGTT 60.179 50.000 0.00 0.00 0.00 3.32
364 365 0.459237 TTTTGGGCGTGCTTGTGTTG 60.459 50.000 0.00 0.00 0.00 3.33
365 366 1.599606 TTTGGGCGTGCTTGTGTTGT 61.600 50.000 0.00 0.00 0.00 3.32
366 367 1.999071 TTGGGCGTGCTTGTGTTGTC 61.999 55.000 0.00 0.00 0.00 3.18
367 368 2.186826 GGGCGTGCTTGTGTTGTCT 61.187 57.895 0.00 0.00 0.00 3.41
368 369 1.009675 GGCGTGCTTGTGTTGTCTG 60.010 57.895 0.00 0.00 0.00 3.51
369 370 1.655350 GCGTGCTTGTGTTGTCTGC 60.655 57.895 0.00 0.00 0.00 4.26
370 371 1.009675 CGTGCTTGTGTTGTCTGCC 60.010 57.895 0.00 0.00 0.00 4.85
371 372 1.360192 GTGCTTGTGTTGTCTGCCC 59.640 57.895 0.00 0.00 0.00 5.36
372 373 1.827789 TGCTTGTGTTGTCTGCCCC 60.828 57.895 0.00 0.00 0.00 5.80
373 374 1.827789 GCTTGTGTTGTCTGCCCCA 60.828 57.895 0.00 0.00 0.00 4.96
374 375 1.799258 GCTTGTGTTGTCTGCCCCAG 61.799 60.000 0.00 0.00 0.00 4.45
375 376 1.799258 CTTGTGTTGTCTGCCCCAGC 61.799 60.000 0.00 0.00 40.48 4.85
385 386 4.692930 GCCCCAGCAATGGATTCT 57.307 55.556 0.00 0.00 39.53 2.40
386 387 2.423388 GCCCCAGCAATGGATTCTC 58.577 57.895 0.00 0.00 39.53 2.87
387 388 0.396139 GCCCCAGCAATGGATTCTCA 60.396 55.000 0.00 0.00 39.53 3.27
388 389 1.688772 CCCCAGCAATGGATTCTCAG 58.311 55.000 0.00 0.00 0.00 3.35
389 390 1.213678 CCCCAGCAATGGATTCTCAGA 59.786 52.381 0.00 0.00 0.00 3.27
390 391 2.158505 CCCCAGCAATGGATTCTCAGAT 60.159 50.000 0.00 0.00 0.00 2.90
391 392 2.885266 CCCAGCAATGGATTCTCAGATG 59.115 50.000 0.00 0.00 0.00 2.90
392 393 3.552875 CCAGCAATGGATTCTCAGATGT 58.447 45.455 0.00 0.00 0.00 3.06
393 394 4.445305 CCCAGCAATGGATTCTCAGATGTA 60.445 45.833 0.00 0.00 0.00 2.29
394 395 5.314529 CCAGCAATGGATTCTCAGATGTAT 58.685 41.667 0.00 0.00 0.00 2.29
395 396 5.411977 CCAGCAATGGATTCTCAGATGTATC 59.588 44.000 0.00 0.00 0.00 2.24
396 397 5.120363 CAGCAATGGATTCTCAGATGTATCG 59.880 44.000 0.00 0.00 0.00 2.92
397 398 4.391216 GCAATGGATTCTCAGATGTATCGG 59.609 45.833 0.00 0.00 0.00 4.18
398 399 4.815533 ATGGATTCTCAGATGTATCGGG 57.184 45.455 0.00 0.00 0.00 5.14
399 400 3.576861 TGGATTCTCAGATGTATCGGGT 58.423 45.455 0.00 0.00 0.00 5.28
400 401 3.574396 TGGATTCTCAGATGTATCGGGTC 59.426 47.826 0.00 0.00 0.00 4.46
401 402 3.366476 GGATTCTCAGATGTATCGGGTCG 60.366 52.174 0.00 0.00 0.00 4.79
402 403 2.343484 TCTCAGATGTATCGGGTCGT 57.657 50.000 0.00 0.00 0.00 4.34
403 404 2.651455 TCTCAGATGTATCGGGTCGTT 58.349 47.619 0.00 0.00 0.00 3.85
404 405 2.357952 TCTCAGATGTATCGGGTCGTTG 59.642 50.000 0.00 0.00 0.00 4.10
405 406 1.202371 TCAGATGTATCGGGTCGTTGC 60.202 52.381 0.00 0.00 0.00 4.17
406 407 1.112113 AGATGTATCGGGTCGTTGCT 58.888 50.000 0.00 0.00 0.00 3.91
407 408 2.034179 CAGATGTATCGGGTCGTTGCTA 59.966 50.000 0.00 0.00 0.00 3.49
408 409 2.891580 AGATGTATCGGGTCGTTGCTAT 59.108 45.455 0.00 0.00 0.00 2.97
409 410 4.077108 AGATGTATCGGGTCGTTGCTATA 58.923 43.478 0.00 0.00 0.00 1.31
410 411 4.705507 AGATGTATCGGGTCGTTGCTATAT 59.294 41.667 0.00 0.00 0.00 0.86
411 412 4.430137 TGTATCGGGTCGTTGCTATATC 57.570 45.455 0.00 0.00 0.00 1.63
412 413 4.077108 TGTATCGGGTCGTTGCTATATCT 58.923 43.478 0.00 0.00 0.00 1.98
413 414 5.247862 TGTATCGGGTCGTTGCTATATCTA 58.752 41.667 0.00 0.00 0.00 1.98
414 415 5.884232 TGTATCGGGTCGTTGCTATATCTAT 59.116 40.000 0.00 0.00 0.00 1.98
415 416 7.049754 TGTATCGGGTCGTTGCTATATCTATA 58.950 38.462 0.00 0.00 0.00 1.31
416 417 7.718314 TGTATCGGGTCGTTGCTATATCTATAT 59.282 37.037 0.00 0.00 0.00 0.86
417 418 9.212641 GTATCGGGTCGTTGCTATATCTATATA 57.787 37.037 0.00 0.00 0.00 0.86
418 419 7.725818 TCGGGTCGTTGCTATATCTATATAG 57.274 40.000 11.20 11.20 43.16 1.31
428 429 6.570672 CTATATCTATATAGCCGGGCGAAA 57.429 41.667 14.39 3.61 36.77 3.46
429 430 3.802948 ATCTATATAGCCGGGCGAAAG 57.197 47.619 14.39 8.12 0.00 2.62
430 431 6.842773 CTATATCTATATAGCCGGGCGAAAGC 60.843 46.154 14.39 0.00 44.53 3.51
601 622 7.857404 ATATATATCCCGAGACAAATAGGGG 57.143 40.000 0.00 0.00 43.92 4.79
607 628 3.181468 CCCGAGACAAATAGGGGAAGTAC 60.181 52.174 0.00 0.00 40.51 2.73
609 630 4.101119 CCGAGACAAATAGGGGAAGTACAT 59.899 45.833 0.00 0.00 0.00 2.29
659 680 3.128589 GTGAAAAACTGCACTTGACAGGA 59.871 43.478 0.00 0.00 39.55 3.86
751 937 3.312973 CGGCACCTAACTAGTCTCTACAG 59.687 52.174 0.00 0.00 0.00 2.74
800 1183 7.823149 ATGATTGCTCAAGACTTAAATTTGC 57.177 32.000 0.00 0.00 34.37 3.68
801 1184 6.747125 TGATTGCTCAAGACTTAAATTTGCA 58.253 32.000 0.00 0.00 0.00 4.08
869 1395 3.942829 TGCAGTACATTTCTCTTCCTGG 58.057 45.455 0.00 0.00 0.00 4.45
886 1412 6.990349 TCTTCCTGGTTGTACTGTTCTTTTAG 59.010 38.462 0.00 0.00 0.00 1.85
926 1476 6.681729 TTCTACTACCTGGAATTGTTGACT 57.318 37.500 0.00 0.00 0.00 3.41
985 1537 7.136119 TCTAACAATTCGTGATGTTTGGTTTC 58.864 34.615 7.53 0.00 40.14 2.78
994 1546 4.518970 GTGATGTTTGGTTTCCTAGCTCAA 59.481 41.667 0.00 0.00 0.00 3.02
999 1551 0.392595 GGTTTCCTAGCTCAACCGGG 60.393 60.000 6.32 0.00 31.00 5.73
1006 1558 2.572095 TAGCTCAACCGGGATGCGTG 62.572 60.000 6.32 0.00 0.00 5.34
1293 1850 1.484240 GTGAAGTCCAGGATCCAGGAG 59.516 57.143 25.40 6.35 32.18 3.69
1317 1874 2.203773 GGCTTTCCCAAGGGCCAA 60.204 61.111 6.18 0.00 43.59 4.52
1443 2000 6.305411 GTGTAGGCTAGGAGAAAGTAGGATA 58.695 44.000 0.00 0.00 0.00 2.59
1628 2185 0.999406 CTGGCGGACTACAACATTCG 59.001 55.000 0.00 0.00 0.00 3.34
1641 2198 0.603569 ACATTCGGAGCGAGAACACT 59.396 50.000 0.00 0.00 37.14 3.55
1679 2236 9.661563 TTGAGTAACGTGATTGTATTAGGAAAT 57.338 29.630 0.00 0.00 0.00 2.17
1819 2385 8.235230 TCTCTCCCTTCTAACATGGTATCTATT 58.765 37.037 0.00 0.00 0.00 1.73
1844 2411 1.343789 GTCGATCCTAAACCCTAGCCC 59.656 57.143 0.00 0.00 0.00 5.19
1991 2559 0.397957 TCCCGATCCTTTGATCCGGA 60.398 55.000 6.61 6.61 46.54 5.14
2104 2672 2.829003 CCTCGCGCCTCTACTCCA 60.829 66.667 0.00 0.00 0.00 3.86
2240 2809 1.680651 CTGCTCTGACCGGGACTCT 60.681 63.158 6.32 0.00 0.00 3.24
2247 2816 1.519455 GACCGGGACTCTTGCATCG 60.519 63.158 6.32 0.00 0.00 3.84
2449 3019 1.675219 GACCTGGCCCGTCAGTTAA 59.325 57.895 13.77 0.00 33.14 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.964875 CACCACACTTGCCGCCAC 61.965 66.667 0.00 0.00 0.00 5.01
5 6 4.947147 TCCACCACACTTGCCGCC 62.947 66.667 0.00 0.00 0.00 6.13
6 7 3.357079 CTCCACCACACTTGCCGC 61.357 66.667 0.00 0.00 0.00 6.53
7 8 3.357079 GCTCCACCACACTTGCCG 61.357 66.667 0.00 0.00 0.00 5.69
8 9 3.357079 CGCTCCACCACACTTGCC 61.357 66.667 0.00 0.00 0.00 4.52
9 10 4.030452 GCGCTCCACCACACTTGC 62.030 66.667 0.00 0.00 0.00 4.01
10 11 3.716006 CGCGCTCCACCACACTTG 61.716 66.667 5.56 0.00 0.00 3.16
11 12 3.923864 TCGCGCTCCACCACACTT 61.924 61.111 5.56 0.00 0.00 3.16
12 13 4.664677 GTCGCGCTCCACCACACT 62.665 66.667 5.56 0.00 0.00 3.55
27 28 4.203076 CACCCCGACCGATCCGTC 62.203 72.222 4.31 4.31 0.00 4.79
30 31 4.157120 CACCACCCCGACCGATCC 62.157 72.222 0.00 0.00 0.00 3.36
31 32 4.157120 CCACCACCCCGACCGATC 62.157 72.222 0.00 0.00 0.00 3.69
36 37 4.636435 CACACCCACCACCCCGAC 62.636 72.222 0.00 0.00 0.00 4.79
38 39 4.947147 CACACACCCACCACCCCG 62.947 72.222 0.00 0.00 0.00 5.73
39 40 4.596585 CCACACACCCACCACCCC 62.597 72.222 0.00 0.00 0.00 4.95
51 52 2.798148 ATTTCTCCCGTCCGCCACAC 62.798 60.000 0.00 0.00 0.00 3.82
52 53 2.515996 GATTTCTCCCGTCCGCCACA 62.516 60.000 0.00 0.00 0.00 4.17
53 54 1.814169 GATTTCTCCCGTCCGCCAC 60.814 63.158 0.00 0.00 0.00 5.01
54 55 2.582436 GATTTCTCCCGTCCGCCA 59.418 61.111 0.00 0.00 0.00 5.69
55 56 2.203029 GGATTTCTCCCGTCCGCC 60.203 66.667 0.00 0.00 35.28 6.13
63 64 0.253327 AAGCCGACAGGGATTTCTCC 59.747 55.000 0.00 0.00 43.35 3.71
64 65 1.373570 CAAGCCGACAGGGATTTCTC 58.626 55.000 0.00 0.00 43.35 2.87
65 66 0.035056 CCAAGCCGACAGGGATTTCT 60.035 55.000 0.00 0.00 43.35 2.52
66 67 1.657751 GCCAAGCCGACAGGGATTTC 61.658 60.000 0.00 0.00 43.35 2.17
67 68 1.678970 GCCAAGCCGACAGGGATTT 60.679 57.895 0.00 0.00 43.35 2.17
69 70 4.115199 GGCCAAGCCGACAGGGAT 62.115 66.667 0.00 0.00 39.62 3.85
101 102 3.893343 GATACTAGACGCCGGCGCC 62.893 68.421 46.22 38.14 44.19 6.53
102 103 2.428735 GATACTAGACGCCGGCGC 60.429 66.667 46.22 36.20 44.19 6.53
103 104 2.254651 GGATACTAGACGCCGGCG 59.745 66.667 44.88 44.88 46.03 6.46
104 105 2.649614 GGGATACTAGACGCCGGC 59.350 66.667 19.07 19.07 0.00 6.13
105 106 1.228490 AGGGGATACTAGACGCCGG 60.228 63.158 0.00 0.00 42.62 6.13
106 107 0.536687 TGAGGGGATACTAGACGCCG 60.537 60.000 0.00 0.00 42.62 6.46
107 108 0.960286 GTGAGGGGATACTAGACGCC 59.040 60.000 0.00 5.59 39.01 5.68
108 109 0.960286 GGTGAGGGGATACTAGACGC 59.040 60.000 0.00 0.00 0.00 5.19
109 110 1.133575 TGGGTGAGGGGATACTAGACG 60.134 57.143 0.00 0.00 0.00 4.18
110 111 2.769602 TGGGTGAGGGGATACTAGAC 57.230 55.000 0.00 0.00 0.00 2.59
111 112 2.760025 GCATGGGTGAGGGGATACTAGA 60.760 54.545 0.00 0.00 0.00 2.43
112 113 1.625818 GCATGGGTGAGGGGATACTAG 59.374 57.143 0.00 0.00 0.00 2.57
113 114 1.729586 GCATGGGTGAGGGGATACTA 58.270 55.000 0.00 0.00 0.00 1.82
114 115 1.062488 GGCATGGGTGAGGGGATACT 61.062 60.000 0.00 0.00 0.00 2.12
115 116 1.456287 GGCATGGGTGAGGGGATAC 59.544 63.158 0.00 0.00 0.00 2.24
116 117 1.774217 GGGCATGGGTGAGGGGATA 60.774 63.158 0.00 0.00 0.00 2.59
117 118 3.105928 GGGCATGGGTGAGGGGAT 61.106 66.667 0.00 0.00 0.00 3.85
120 121 3.813724 GAGGGGCATGGGTGAGGG 61.814 72.222 0.00 0.00 0.00 4.30
121 122 3.813724 GGAGGGGCATGGGTGAGG 61.814 72.222 0.00 0.00 0.00 3.86
122 123 3.016971 TGGAGGGGCATGGGTGAG 61.017 66.667 0.00 0.00 0.00 3.51
123 124 3.338250 GTGGAGGGGCATGGGTGA 61.338 66.667 0.00 0.00 0.00 4.02
124 125 1.644437 TATGTGGAGGGGCATGGGTG 61.644 60.000 0.00 0.00 0.00 4.61
125 126 1.308657 TATGTGGAGGGGCATGGGT 60.309 57.895 0.00 0.00 0.00 4.51
126 127 1.151450 GTATGTGGAGGGGCATGGG 59.849 63.158 0.00 0.00 0.00 4.00
127 128 1.151450 GGTATGTGGAGGGGCATGG 59.849 63.158 0.00 0.00 0.00 3.66
128 129 1.227943 CGGTATGTGGAGGGGCATG 60.228 63.158 0.00 0.00 0.00 4.06
129 130 2.452064 CCGGTATGTGGAGGGGCAT 61.452 63.158 0.00 0.00 0.00 4.40
130 131 3.087253 CCGGTATGTGGAGGGGCA 61.087 66.667 0.00 0.00 0.00 5.36
131 132 3.873812 CCCGGTATGTGGAGGGGC 61.874 72.222 0.00 0.00 40.18 5.80
133 134 3.168528 CCCCCGGTATGTGGAGGG 61.169 72.222 0.00 0.00 43.41 4.30
134 135 1.276140 TTTCCCCCGGTATGTGGAGG 61.276 60.000 0.00 0.00 0.00 4.30
135 136 0.843984 ATTTCCCCCGGTATGTGGAG 59.156 55.000 0.00 0.00 0.00 3.86
136 137 0.841289 GATTTCCCCCGGTATGTGGA 59.159 55.000 0.00 0.00 0.00 4.02
137 138 0.179001 GGATTTCCCCCGGTATGTGG 60.179 60.000 0.00 0.00 0.00 4.17
138 139 0.843984 AGGATTTCCCCCGGTATGTG 59.156 55.000 0.00 0.00 36.42 3.21
139 140 2.335933 CTAGGATTTCCCCCGGTATGT 58.664 52.381 0.00 0.00 36.42 2.29
140 141 1.628846 CCTAGGATTTCCCCCGGTATG 59.371 57.143 1.05 0.00 36.42 2.39
141 142 1.510853 TCCTAGGATTTCCCCCGGTAT 59.489 52.381 7.62 0.00 36.42 2.73
142 143 0.943479 TCCTAGGATTTCCCCCGGTA 59.057 55.000 7.62 0.00 36.42 4.02
143 144 0.693430 GTCCTAGGATTTCCCCCGGT 60.693 60.000 16.27 0.00 36.42 5.28
144 145 0.400093 AGTCCTAGGATTTCCCCCGG 60.400 60.000 16.27 0.00 36.42 5.73
145 146 2.249139 CTAGTCCTAGGATTTCCCCCG 58.751 57.143 16.27 0.00 36.42 5.73
146 147 3.116668 AGACTAGTCCTAGGATTTCCCCC 60.117 52.174 19.38 0.00 37.49 5.40
147 148 3.898741 CAGACTAGTCCTAGGATTTCCCC 59.101 52.174 19.38 0.05 37.49 4.81
148 149 3.898741 CCAGACTAGTCCTAGGATTTCCC 59.101 52.174 19.38 0.88 37.49 3.97
149 150 3.898741 CCCAGACTAGTCCTAGGATTTCC 59.101 52.174 19.38 1.31 37.49 3.13
150 151 3.322541 GCCCAGACTAGTCCTAGGATTTC 59.677 52.174 19.38 6.31 37.49 2.17
151 152 3.310193 GCCCAGACTAGTCCTAGGATTT 58.690 50.000 19.38 9.33 37.49 2.17
152 153 2.247635 TGCCCAGACTAGTCCTAGGATT 59.752 50.000 19.38 13.96 37.49 3.01
153 154 1.860240 TGCCCAGACTAGTCCTAGGAT 59.140 52.381 19.38 6.84 37.49 3.24
154 155 1.215673 CTGCCCAGACTAGTCCTAGGA 59.784 57.143 19.38 7.62 37.49 2.94
155 156 1.698506 CTGCCCAGACTAGTCCTAGG 58.301 60.000 19.38 17.29 37.49 3.02
156 157 1.036707 GCTGCCCAGACTAGTCCTAG 58.963 60.000 19.38 9.63 39.04 3.02
157 158 0.335019 TGCTGCCCAGACTAGTCCTA 59.665 55.000 19.38 1.11 0.00 2.94
158 159 0.975040 CTGCTGCCCAGACTAGTCCT 60.975 60.000 19.38 4.22 44.64 3.85
159 160 1.519719 CTGCTGCCCAGACTAGTCC 59.480 63.158 19.38 4.63 44.64 3.85
160 161 1.153469 GCTGCTGCCCAGACTAGTC 60.153 63.158 15.41 15.41 44.64 2.59
161 162 2.985456 GCTGCTGCCCAGACTAGT 59.015 61.111 3.85 0.00 44.64 2.57
162 163 2.202851 CGCTGCTGCCCAGACTAG 60.203 66.667 10.24 0.00 44.64 2.57
163 164 2.997315 ACGCTGCTGCCCAGACTA 60.997 61.111 10.24 0.00 44.64 2.59
164 165 4.385405 GACGCTGCTGCCCAGACT 62.385 66.667 10.24 0.00 44.64 3.24
170 171 3.121030 AATGACGACGCTGCTGCC 61.121 61.111 10.24 0.00 35.36 4.85
171 172 2.097160 CAATGACGACGCTGCTGC 59.903 61.111 5.34 5.34 0.00 5.25
172 173 1.417592 GACAATGACGACGCTGCTG 59.582 57.895 0.00 0.00 0.00 4.41
173 174 2.088763 CGACAATGACGACGCTGCT 61.089 57.895 0.00 0.00 0.00 4.24
174 175 2.372690 ACGACAATGACGACGCTGC 61.373 57.895 12.41 0.00 34.70 5.25
175 176 1.275471 ACACGACAATGACGACGCTG 61.275 55.000 12.41 2.22 34.70 5.18
176 177 0.596600 AACACGACAATGACGACGCT 60.597 50.000 12.41 0.00 34.70 5.07
177 178 1.054574 TAACACGACAATGACGACGC 58.945 50.000 12.41 0.00 34.70 5.19
178 179 2.313234 AGTAACACGACAATGACGACG 58.687 47.619 12.41 5.09 34.70 5.12
179 180 3.120782 GGAAGTAACACGACAATGACGAC 59.879 47.826 12.41 0.00 34.70 4.34
180 181 3.005050 AGGAAGTAACACGACAATGACGA 59.995 43.478 12.41 0.00 34.70 4.20
181 182 3.121279 CAGGAAGTAACACGACAATGACG 59.879 47.826 3.29 3.29 0.00 4.35
182 183 4.304110 TCAGGAAGTAACACGACAATGAC 58.696 43.478 0.00 0.00 0.00 3.06
183 184 4.594123 TCAGGAAGTAACACGACAATGA 57.406 40.909 0.00 0.00 0.00 2.57
184 185 4.152402 CCTTCAGGAAGTAACACGACAATG 59.848 45.833 8.14 0.00 36.72 2.82
185 186 4.202326 ACCTTCAGGAAGTAACACGACAAT 60.202 41.667 8.14 0.00 38.94 2.71
186 187 3.133362 ACCTTCAGGAAGTAACACGACAA 59.867 43.478 8.14 0.00 38.94 3.18
187 188 2.696707 ACCTTCAGGAAGTAACACGACA 59.303 45.455 8.14 0.00 38.94 4.35
188 189 3.057734 CACCTTCAGGAAGTAACACGAC 58.942 50.000 8.14 0.00 38.94 4.34
189 190 2.696707 ACACCTTCAGGAAGTAACACGA 59.303 45.455 8.14 0.00 38.94 4.35
190 191 3.107642 ACACCTTCAGGAAGTAACACG 57.892 47.619 8.14 0.00 38.94 4.49
191 192 3.003378 GCAACACCTTCAGGAAGTAACAC 59.997 47.826 8.14 0.00 38.94 3.32
192 193 3.118038 AGCAACACCTTCAGGAAGTAACA 60.118 43.478 8.14 0.00 38.94 2.41
193 194 3.477530 AGCAACACCTTCAGGAAGTAAC 58.522 45.455 8.14 0.00 38.94 2.50
194 195 3.857157 AGCAACACCTTCAGGAAGTAA 57.143 42.857 8.14 0.00 38.94 2.24
195 196 3.476552 CAAGCAACACCTTCAGGAAGTA 58.523 45.455 8.14 0.00 38.94 2.24
196 197 2.301346 CAAGCAACACCTTCAGGAAGT 58.699 47.619 8.14 0.00 38.94 3.01
197 198 1.610522 CCAAGCAACACCTTCAGGAAG 59.389 52.381 0.00 2.01 38.94 3.46
198 199 1.064017 ACCAAGCAACACCTTCAGGAA 60.064 47.619 0.00 0.00 38.94 3.36
199 200 0.550914 ACCAAGCAACACCTTCAGGA 59.449 50.000 0.00 0.00 38.94 3.86
200 201 2.270352 TACCAAGCAACACCTTCAGG 57.730 50.000 0.00 0.00 42.17 3.86
201 202 3.058016 CACATACCAAGCAACACCTTCAG 60.058 47.826 0.00 0.00 0.00 3.02
202 203 2.884012 CACATACCAAGCAACACCTTCA 59.116 45.455 0.00 0.00 0.00 3.02
203 204 2.228822 CCACATACCAAGCAACACCTTC 59.771 50.000 0.00 0.00 0.00 3.46
204 205 2.238521 CCACATACCAAGCAACACCTT 58.761 47.619 0.00 0.00 0.00 3.50
205 206 1.144913 ACCACATACCAAGCAACACCT 59.855 47.619 0.00 0.00 0.00 4.00
206 207 1.269448 CACCACATACCAAGCAACACC 59.731 52.381 0.00 0.00 0.00 4.16
207 208 1.269448 CCACCACATACCAAGCAACAC 59.731 52.381 0.00 0.00 0.00 3.32
208 209 1.133637 ACCACCACATACCAAGCAACA 60.134 47.619 0.00 0.00 0.00 3.33
209 210 1.539827 GACCACCACATACCAAGCAAC 59.460 52.381 0.00 0.00 0.00 4.17
210 211 1.546773 GGACCACCACATACCAAGCAA 60.547 52.381 0.00 0.00 35.97 3.91
211 212 0.037590 GGACCACCACATACCAAGCA 59.962 55.000 0.00 0.00 35.97 3.91
212 213 1.024579 CGGACCACCACATACCAAGC 61.025 60.000 0.00 0.00 35.59 4.01
213 214 0.611200 TCGGACCACCACATACCAAG 59.389 55.000 0.00 0.00 35.59 3.61
214 215 1.002659 CTTCGGACCACCACATACCAA 59.997 52.381 0.00 0.00 35.59 3.67
215 216 0.611200 CTTCGGACCACCACATACCA 59.389 55.000 0.00 0.00 35.59 3.25
216 217 0.611714 ACTTCGGACCACCACATACC 59.388 55.000 0.00 0.00 35.59 2.73
217 218 1.722011 CACTTCGGACCACCACATAC 58.278 55.000 0.00 0.00 35.59 2.39
218 219 0.036765 GCACTTCGGACCACCACATA 60.037 55.000 0.00 0.00 35.59 2.29
219 220 1.302511 GCACTTCGGACCACCACAT 60.303 57.895 0.00 0.00 35.59 3.21
220 221 1.116536 TAGCACTTCGGACCACCACA 61.117 55.000 0.00 0.00 35.59 4.17
221 222 0.389948 CTAGCACTTCGGACCACCAC 60.390 60.000 0.00 0.00 35.59 4.16
222 223 1.541310 CCTAGCACTTCGGACCACCA 61.541 60.000 0.00 0.00 35.59 4.17
223 224 1.218316 CCTAGCACTTCGGACCACC 59.782 63.158 0.00 0.00 0.00 4.61
224 225 0.173708 CTCCTAGCACTTCGGACCAC 59.826 60.000 0.00 0.00 0.00 4.16
225 226 0.251653 ACTCCTAGCACTTCGGACCA 60.252 55.000 0.00 0.00 0.00 4.02
226 227 0.173708 CACTCCTAGCACTTCGGACC 59.826 60.000 0.00 0.00 0.00 4.46
227 228 0.889306 ACACTCCTAGCACTTCGGAC 59.111 55.000 0.00 0.00 0.00 4.79
228 229 0.888619 CACACTCCTAGCACTTCGGA 59.111 55.000 0.00 0.00 0.00 4.55
229 230 0.603569 ACACACTCCTAGCACTTCGG 59.396 55.000 0.00 0.00 0.00 4.30
230 231 1.670087 CCACACACTCCTAGCACTTCG 60.670 57.143 0.00 0.00 0.00 3.79
231 232 1.618837 TCCACACACTCCTAGCACTTC 59.381 52.381 0.00 0.00 0.00 3.01
232 233 1.717032 TCCACACACTCCTAGCACTT 58.283 50.000 0.00 0.00 0.00 3.16
233 234 1.717032 TTCCACACACTCCTAGCACT 58.283 50.000 0.00 0.00 0.00 4.40
234 235 2.543777 TTTCCACACACTCCTAGCAC 57.456 50.000 0.00 0.00 0.00 4.40
235 236 2.906389 AGATTTCCACACACTCCTAGCA 59.094 45.455 0.00 0.00 0.00 3.49
236 237 3.526534 GAGATTTCCACACACTCCTAGC 58.473 50.000 0.00 0.00 0.00 3.42
237 238 3.429547 CGGAGATTTCCACACACTCCTAG 60.430 52.174 2.78 0.00 44.26 3.02
238 239 2.496070 CGGAGATTTCCACACACTCCTA 59.504 50.000 2.78 0.00 44.26 2.94
239 240 1.276421 CGGAGATTTCCACACACTCCT 59.724 52.381 2.78 0.00 44.26 3.69
240 241 1.676014 CCGGAGATTTCCACACACTCC 60.676 57.143 0.00 0.00 44.26 3.85
241 242 1.275291 TCCGGAGATTTCCACACACTC 59.725 52.381 0.00 0.00 44.26 3.51
242 243 1.348064 TCCGGAGATTTCCACACACT 58.652 50.000 0.00 0.00 44.26 3.55
243 244 2.076863 CTTCCGGAGATTTCCACACAC 58.923 52.381 3.34 0.00 44.26 3.82
244 245 1.003118 CCTTCCGGAGATTTCCACACA 59.997 52.381 3.34 0.00 44.26 3.72
245 246 1.739067 CCTTCCGGAGATTTCCACAC 58.261 55.000 3.34 0.00 44.26 3.82
246 247 0.035439 GCCTTCCGGAGATTTCCACA 60.035 55.000 3.34 0.00 44.26 4.17
247 248 1.090052 CGCCTTCCGGAGATTTCCAC 61.090 60.000 3.34 0.00 44.26 4.02
248 249 1.220749 CGCCTTCCGGAGATTTCCA 59.779 57.895 3.34 0.00 44.26 3.53
249 250 2.180862 GCGCCTTCCGGAGATTTCC 61.181 63.158 3.34 0.00 40.33 3.13
250 251 1.449601 TGCGCCTTCCGGAGATTTC 60.450 57.895 3.34 0.00 37.44 2.17
251 252 2.668632 TGCGCCTTCCGGAGATTT 59.331 55.556 3.34 0.00 37.44 2.17
270 271 3.114616 GATGATGATCCGCGGCCG 61.115 66.667 24.05 24.05 0.00 6.13
271 272 3.114616 CGATGATGATCCGCGGCC 61.115 66.667 23.51 15.56 0.00 6.13
272 273 1.498865 AAACGATGATGATCCGCGGC 61.499 55.000 23.51 8.29 0.00 6.53
273 274 0.937304 AAAACGATGATGATCCGCGG 59.063 50.000 22.12 22.12 0.00 6.46
274 275 1.333169 CCAAAACGATGATGATCCGCG 60.333 52.381 0.00 0.00 0.00 6.46
275 276 1.670811 ACCAAAACGATGATGATCCGC 59.329 47.619 0.00 0.00 0.00 5.54
276 277 2.033747 CGACCAAAACGATGATGATCCG 60.034 50.000 0.00 0.00 0.00 4.18
277 278 3.194861 TCGACCAAAACGATGATGATCC 58.805 45.455 0.00 0.00 34.85 3.36
295 296 1.530323 TGACAACAGAGTCGGATCGA 58.470 50.000 0.00 0.00 41.41 3.59
296 297 2.568696 ATGACAACAGAGTCGGATCG 57.431 50.000 0.00 0.00 41.41 3.69
297 298 5.000012 ACTAATGACAACAGAGTCGGATC 58.000 43.478 0.00 0.00 41.41 3.36
298 299 5.407407 AACTAATGACAACAGAGTCGGAT 57.593 39.130 0.00 0.00 41.41 4.18
299 300 4.866508 AACTAATGACAACAGAGTCGGA 57.133 40.909 0.00 0.00 41.41 4.55
300 301 5.230942 AGAAACTAATGACAACAGAGTCGG 58.769 41.667 0.00 0.00 41.41 4.79
301 302 6.771188 AAGAAACTAATGACAACAGAGTCG 57.229 37.500 0.00 0.00 41.41 4.18
335 336 4.698575 AGCACGCCCAAAAGAAATAAAAA 58.301 34.783 0.00 0.00 0.00 1.94
336 337 4.329462 AGCACGCCCAAAAGAAATAAAA 57.671 36.364 0.00 0.00 0.00 1.52
337 338 4.054671 CAAGCACGCCCAAAAGAAATAAA 58.945 39.130 0.00 0.00 0.00 1.40
338 339 3.068873 ACAAGCACGCCCAAAAGAAATAA 59.931 39.130 0.00 0.00 0.00 1.40
339 340 2.625790 ACAAGCACGCCCAAAAGAAATA 59.374 40.909 0.00 0.00 0.00 1.40
340 341 1.412343 ACAAGCACGCCCAAAAGAAAT 59.588 42.857 0.00 0.00 0.00 2.17
341 342 0.820871 ACAAGCACGCCCAAAAGAAA 59.179 45.000 0.00 0.00 0.00 2.52
342 343 0.102120 CACAAGCACGCCCAAAAGAA 59.898 50.000 0.00 0.00 0.00 2.52
343 344 1.034838 ACACAAGCACGCCCAAAAGA 61.035 50.000 0.00 0.00 0.00 2.52
344 345 0.179113 AACACAAGCACGCCCAAAAG 60.179 50.000 0.00 0.00 0.00 2.27
345 346 0.459237 CAACACAAGCACGCCCAAAA 60.459 50.000 0.00 0.00 0.00 2.44
346 347 1.140589 CAACACAAGCACGCCCAAA 59.859 52.632 0.00 0.00 0.00 3.28
347 348 1.999071 GACAACACAAGCACGCCCAA 61.999 55.000 0.00 0.00 0.00 4.12
348 349 2.439338 ACAACACAAGCACGCCCA 60.439 55.556 0.00 0.00 0.00 5.36
349 350 2.186826 AGACAACACAAGCACGCCC 61.187 57.895 0.00 0.00 0.00 6.13
350 351 1.009675 CAGACAACACAAGCACGCC 60.010 57.895 0.00 0.00 0.00 5.68
351 352 1.655350 GCAGACAACACAAGCACGC 60.655 57.895 0.00 0.00 0.00 5.34
352 353 1.009675 GGCAGACAACACAAGCACG 60.010 57.895 0.00 0.00 0.00 5.34
353 354 1.360192 GGGCAGACAACACAAGCAC 59.640 57.895 0.00 0.00 0.00 4.40
354 355 1.827789 GGGGCAGACAACACAAGCA 60.828 57.895 0.00 0.00 0.00 3.91
355 356 1.799258 CTGGGGCAGACAACACAAGC 61.799 60.000 0.00 0.00 32.44 4.01
356 357 1.799258 GCTGGGGCAGACAACACAAG 61.799 60.000 0.00 0.00 38.54 3.16
357 358 1.827789 GCTGGGGCAGACAACACAA 60.828 57.895 0.00 0.00 38.54 3.33
358 359 2.203337 GCTGGGGCAGACAACACA 60.203 61.111 0.00 0.00 38.54 3.72
359 360 2.203337 TGCTGGGGCAGACAACAC 60.203 61.111 0.00 0.00 44.28 3.32
368 369 0.396139 TGAGAATCCATTGCTGGGGC 60.396 55.000 0.00 0.00 43.34 5.80
369 370 1.213678 TCTGAGAATCCATTGCTGGGG 59.786 52.381 0.00 0.00 43.34 4.96
370 371 2.723322 TCTGAGAATCCATTGCTGGG 57.277 50.000 0.00 0.00 43.34 4.45
371 372 3.552875 ACATCTGAGAATCCATTGCTGG 58.447 45.455 0.00 0.00 44.64 4.85
372 373 5.120363 CGATACATCTGAGAATCCATTGCTG 59.880 44.000 0.00 0.00 0.00 4.41
373 374 5.236282 CGATACATCTGAGAATCCATTGCT 58.764 41.667 0.00 0.00 0.00 3.91
374 375 4.391216 CCGATACATCTGAGAATCCATTGC 59.609 45.833 0.00 0.00 0.00 3.56
375 376 4.934001 CCCGATACATCTGAGAATCCATTG 59.066 45.833 0.00 0.00 0.00 2.82
376 377 4.594920 ACCCGATACATCTGAGAATCCATT 59.405 41.667 0.00 0.00 0.00 3.16
377 378 4.163427 ACCCGATACATCTGAGAATCCAT 58.837 43.478 0.00 0.00 0.00 3.41
378 379 3.574396 GACCCGATACATCTGAGAATCCA 59.426 47.826 0.00 0.00 0.00 3.41
379 380 3.366476 CGACCCGATACATCTGAGAATCC 60.366 52.174 0.00 0.00 0.00 3.01
380 381 3.253677 ACGACCCGATACATCTGAGAATC 59.746 47.826 0.00 0.00 0.00 2.52
381 382 3.223435 ACGACCCGATACATCTGAGAAT 58.777 45.455 0.00 0.00 0.00 2.40
382 383 2.651455 ACGACCCGATACATCTGAGAA 58.349 47.619 0.00 0.00 0.00 2.87
383 384 2.343484 ACGACCCGATACATCTGAGA 57.657 50.000 0.00 0.00 0.00 3.27
384 385 2.732366 CAACGACCCGATACATCTGAG 58.268 52.381 0.00 0.00 0.00 3.35
385 386 1.202371 GCAACGACCCGATACATCTGA 60.202 52.381 0.00 0.00 0.00 3.27
386 387 1.202417 AGCAACGACCCGATACATCTG 60.202 52.381 0.00 0.00 0.00 2.90
387 388 1.112113 AGCAACGACCCGATACATCT 58.888 50.000 0.00 0.00 0.00 2.90
388 389 2.787601 TAGCAACGACCCGATACATC 57.212 50.000 0.00 0.00 0.00 3.06
389 390 4.705507 AGATATAGCAACGACCCGATACAT 59.294 41.667 0.00 0.00 0.00 2.29
390 391 4.077108 AGATATAGCAACGACCCGATACA 58.923 43.478 0.00 0.00 0.00 2.29
391 392 4.698583 AGATATAGCAACGACCCGATAC 57.301 45.455 0.00 0.00 0.00 2.24
392 393 9.433153 CTATATAGATATAGCAACGACCCGATA 57.567 37.037 3.44 0.00 36.77 2.92
393 394 8.325421 CTATATAGATATAGCAACGACCCGAT 57.675 38.462 3.44 0.00 36.77 4.18
394 395 7.725818 CTATATAGATATAGCAACGACCCGA 57.274 40.000 3.44 0.00 36.77 5.14
405 406 6.570672 TTTCGCCCGGCTATATAGATATAG 57.429 41.667 14.16 10.90 43.16 1.31
406 407 5.048224 GCTTTCGCCCGGCTATATAGATATA 60.048 44.000 14.16 0.00 0.00 0.86
407 408 4.262079 GCTTTCGCCCGGCTATATAGATAT 60.262 45.833 14.16 0.00 0.00 1.63
408 409 3.067742 GCTTTCGCCCGGCTATATAGATA 59.932 47.826 14.16 0.00 0.00 1.98
409 410 2.159085 GCTTTCGCCCGGCTATATAGAT 60.159 50.000 14.16 0.00 0.00 1.98
410 411 1.203994 GCTTTCGCCCGGCTATATAGA 59.796 52.381 14.16 0.00 0.00 1.98
411 412 1.641577 GCTTTCGCCCGGCTATATAG 58.358 55.000 8.05 5.30 0.00 1.31
412 413 3.826637 GCTTTCGCCCGGCTATATA 57.173 52.632 8.05 0.00 0.00 0.86
413 414 4.695560 GCTTTCGCCCGGCTATAT 57.304 55.556 8.05 0.00 0.00 0.86
423 424 3.831715 ACACTCAAAATAGGCTTTCGC 57.168 42.857 0.00 0.00 0.00 4.70
424 425 5.266242 GCATACACTCAAAATAGGCTTTCG 58.734 41.667 0.00 0.00 0.00 3.46
425 426 5.163754 ACGCATACACTCAAAATAGGCTTTC 60.164 40.000 0.00 0.00 0.00 2.62
426 427 4.700213 ACGCATACACTCAAAATAGGCTTT 59.300 37.500 0.00 0.00 0.00 3.51
427 428 4.261801 ACGCATACACTCAAAATAGGCTT 58.738 39.130 0.00 0.00 0.00 4.35
428 429 3.871594 GACGCATACACTCAAAATAGGCT 59.128 43.478 0.00 0.00 0.00 4.58
429 430 3.621268 TGACGCATACACTCAAAATAGGC 59.379 43.478 0.00 0.00 0.00 3.93
430 431 5.109210 TCTGACGCATACACTCAAAATAGG 58.891 41.667 0.00 0.00 0.00 2.57
431 432 6.036470 TCTCTGACGCATACACTCAAAATAG 58.964 40.000 0.00 0.00 0.00 1.73
432 433 5.961272 TCTCTGACGCATACACTCAAAATA 58.039 37.500 0.00 0.00 0.00 1.40
433 434 4.820897 TCTCTGACGCATACACTCAAAAT 58.179 39.130 0.00 0.00 0.00 1.82
434 435 4.251543 TCTCTGACGCATACACTCAAAA 57.748 40.909 0.00 0.00 0.00 2.44
435 436 3.934457 TCTCTGACGCATACACTCAAA 57.066 42.857 0.00 0.00 0.00 2.69
436 437 3.255888 ACTTCTCTGACGCATACACTCAA 59.744 43.478 0.00 0.00 0.00 3.02
437 438 2.820197 ACTTCTCTGACGCATACACTCA 59.180 45.455 0.00 0.00 0.00 3.41
438 439 3.495670 ACTTCTCTGACGCATACACTC 57.504 47.619 0.00 0.00 0.00 3.51
439 440 3.944055 AACTTCTCTGACGCATACACT 57.056 42.857 0.00 0.00 0.00 3.55
585 606 1.838077 ACTTCCCCTATTTGTCTCGGG 59.162 52.381 0.00 0.00 36.42 5.14
587 608 4.730949 TGTACTTCCCCTATTTGTCTCG 57.269 45.455 0.00 0.00 0.00 4.04
601 622 3.652478 CGTCGCCGTTTTTATGTACTTC 58.348 45.455 0.00 0.00 0.00 3.01
659 680 7.680730 AGTGATACTTCTATTTGGTGAACACT 58.319 34.615 4.96 0.00 0.00 3.55
721 742 0.756903 AGTTAGGTGCCGTGAGTTGT 59.243 50.000 0.00 0.00 0.00 3.32
795 1178 3.379372 CACACTAAGCCTAGCATGCAAAT 59.621 43.478 21.98 1.04 0.00 2.32
797 1180 2.358957 CACACTAAGCCTAGCATGCAA 58.641 47.619 21.98 0.00 0.00 4.08
798 1181 1.407299 CCACACTAAGCCTAGCATGCA 60.407 52.381 21.98 5.01 0.00 3.96
799 1182 1.303309 CCACACTAAGCCTAGCATGC 58.697 55.000 10.51 10.51 0.00 4.06
800 1183 1.303309 GCCACACTAAGCCTAGCATG 58.697 55.000 0.00 0.00 0.00 4.06
801 1184 0.911769 TGCCACACTAAGCCTAGCAT 59.088 50.000 0.00 0.00 0.00 3.79
892 1418 4.262765 CCAGGTAGTAGAAAGAACCCGTTT 60.263 45.833 0.00 0.00 32.10 3.60
895 1421 3.094572 TCCAGGTAGTAGAAAGAACCCG 58.905 50.000 0.00 0.00 32.10 5.28
899 1425 7.660208 GTCAACAATTCCAGGTAGTAGAAAGAA 59.340 37.037 0.00 0.00 0.00 2.52
959 1511 6.241207 ACCAAACATCACGAATTGTTAGAG 57.759 37.500 0.00 0.00 35.09 2.43
970 1522 3.074412 AGCTAGGAAACCAAACATCACG 58.926 45.455 0.00 0.00 0.00 4.35
985 1537 1.227674 GCATCCCGGTTGAGCTAGG 60.228 63.158 0.00 0.00 0.00 3.02
994 1546 1.671054 CAAAGACACGCATCCCGGT 60.671 57.895 0.00 0.00 42.52 5.28
1317 1874 1.078848 GGCGAAGATGAGGCACTGT 60.079 57.895 0.00 0.00 41.55 3.55
1427 1984 7.510685 AGATGTGCATTATCCTACTTTCTCCTA 59.489 37.037 9.51 0.00 0.00 2.94
1443 2000 2.895404 AGGCTTGACAAAGATGTGCATT 59.105 40.909 0.00 0.00 40.74 3.56
1603 2160 3.702048 GTAGTCCGCCAGGGTGCA 61.702 66.667 0.00 0.00 38.33 4.57
1628 2185 2.086054 ATGAACAGTGTTCTCGCTCC 57.914 50.000 30.69 9.22 31.46 4.70
1641 2198 5.351740 TCACGTTACTCAACACAAATGAACA 59.648 36.000 0.00 0.00 34.05 3.18
1819 2385 1.906574 AGGGTTTAGGATCGACTTGCA 59.093 47.619 0.00 0.00 0.00 4.08
1991 2559 0.244178 GACCGGCGAGAGAGAAAACT 59.756 55.000 9.30 0.00 0.00 2.66
2228 2797 1.596934 GATGCAAGAGTCCCGGTCA 59.403 57.895 0.00 0.00 0.00 4.02
2309 2878 3.074369 TCCGAGATGAAGCCGGCA 61.074 61.111 31.54 8.70 42.70 5.69
2501 3071 2.813474 CCGTTGCTTGATCGGCGA 60.813 61.111 13.87 13.87 37.90 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.