Multiple sequence alignment - TraesCS3B01G567200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G567200 chr3B 100.000 2675 0 0 1 2675 798647349 798650023 0.000000e+00 4940.0
1 TraesCS3B01G567200 chr3B 92.712 837 55 6 807 1639 798686511 798687345 0.000000e+00 1203.0
2 TraesCS3B01G567200 chr3B 96.562 698 23 1 1979 2675 684105439 684106136 0.000000e+00 1155.0
3 TraesCS3B01G567200 chr3B 91.168 702 53 6 1980 2675 641990992 641990294 0.000000e+00 944.0
4 TraesCS3B01G567200 chr3B 90.706 269 21 3 1720 1984 798981771 798982039 3.280000e-94 355.0
5 TraesCS3B01G567200 chr3B 88.316 291 19 8 335 616 798686144 798686428 4.270000e-88 335.0
6 TraesCS3B01G567200 chr3D 92.666 1009 64 6 810 1814 595705156 595706158 0.000000e+00 1445.0
7 TraesCS3B01G567200 chr3D 91.351 1029 73 12 807 1828 595738982 595740001 0.000000e+00 1393.0
8 TraesCS3B01G567200 chr3D 88.019 1060 98 13 807 1858 595302983 595304021 0.000000e+00 1227.0
9 TraesCS3B01G567200 chr3D 87.807 1058 107 11 810 1864 595674302 595675340 0.000000e+00 1219.0
10 TraesCS3B01G567200 chr3D 87.636 922 98 7 942 1858 595286611 595285701 0.000000e+00 1057.0
11 TraesCS3B01G567200 chr3D 93.429 700 42 2 1980 2675 500550840 500551539 0.000000e+00 1035.0
12 TraesCS3B01G567200 chr3D 91.732 508 28 7 117 616 595704568 595705069 0.000000e+00 693.0
13 TraesCS3B01G567200 chr3D 90.272 514 34 11 107 609 595673542 595674050 0.000000e+00 658.0
14 TraesCS3B01G567200 chr3D 84.977 639 47 22 1 613 595738285 595738900 1.060000e-168 603.0
15 TraesCS3B01G567200 chr3D 85.047 321 33 6 301 609 595302393 595302710 2.000000e-81 313.0
16 TraesCS3B01G567200 chr3D 87.549 257 27 4 354 608 595287060 595286807 2.600000e-75 292.0
17 TraesCS3B01G567200 chr3D 95.745 94 4 0 1 94 595301618 595301711 4.610000e-33 152.0
18 TraesCS3B01G567200 chr3A 92.316 976 72 3 807 1781 726458150 726459123 0.000000e+00 1384.0
19 TraesCS3B01G567200 chr3A 92.373 944 67 4 810 1752 726515615 726516554 0.000000e+00 1339.0
20 TraesCS3B01G567200 chr3A 86.091 949 101 10 810 1755 726410910 726409990 0.000000e+00 992.0
21 TraesCS3B01G567200 chr3A 86.553 647 35 22 1 613 726514900 726515528 0.000000e+00 665.0
22 TraesCS3B01G567200 chr3A 88.426 432 26 9 2 417 726457491 726457914 1.430000e-137 499.0
23 TraesCS3B01G567200 chr3A 86.100 259 30 5 354 610 726411270 726411016 9.430000e-70 274.0
24 TraesCS3B01G567200 chr3A 91.503 153 10 3 465 616 726457915 726458065 9.710000e-50 207.0
25 TraesCS3B01G567200 chr3A 81.690 213 20 7 110 316 726411476 726411277 2.760000e-35 159.0
26 TraesCS3B01G567200 chr3A 91.667 72 2 3 609 676 726458085 726458156 2.190000e-16 97.1
27 TraesCS3B01G567200 chr6B 96.121 696 27 0 1980 2675 277627267 277627962 0.000000e+00 1136.0
28 TraesCS3B01G567200 chr4B 95.324 663 31 0 1979 2641 586242657 586243319 0.000000e+00 1053.0
29 TraesCS3B01G567200 chr4D 93.239 710 43 4 1969 2675 434984569 434983862 0.000000e+00 1040.0
30 TraesCS3B01G567200 chr2B 91.143 700 54 5 1980 2673 691787715 691788412 0.000000e+00 942.0
31 TraesCS3B01G567200 chr2B 89.855 138 10 2 677 810 8567353 8567216 9.840000e-40 174.0
32 TraesCS3B01G567200 chr7A 91.198 693 57 3 1980 2669 61813041 61812350 0.000000e+00 939.0
33 TraesCS3B01G567200 chr5D 90.415 699 61 3 1982 2675 75931928 75931231 0.000000e+00 915.0
34 TraesCS3B01G567200 chr5D 81.890 127 21 2 685 810 555497631 555497506 3.640000e-19 106.0
35 TraesCS3B01G567200 chr5B 91.852 135 11 0 676 810 187994400 187994534 3.520000e-44 189.0
36 TraesCS3B01G567200 chr2A 91.111 135 11 1 676 810 627614798 627614931 5.880000e-42 182.0
37 TraesCS3B01G567200 chr1B 83.333 138 16 7 676 810 231661220 231661353 1.300000e-23 121.0
38 TraesCS3B01G567200 chr1B 80.882 136 22 4 677 810 501361102 501361235 1.310000e-18 104.0
39 TraesCS3B01G567200 chr2D 82.946 129 21 1 683 810 558065583 558065455 6.050000e-22 115.0
40 TraesCS3B01G567200 chr2D 92.982 57 3 1 677 733 651731304 651731359 6.140000e-12 82.4
41 TraesCS3B01G567200 chr1D 80.000 135 25 2 677 810 9793405 9793538 6.090000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G567200 chr3B 798647349 798650023 2674 False 4940.000 4940 100.000000 1 2675 1 chr3B.!!$F2 2674
1 TraesCS3B01G567200 chr3B 684105439 684106136 697 False 1155.000 1155 96.562000 1979 2675 1 chr3B.!!$F1 696
2 TraesCS3B01G567200 chr3B 641990294 641990992 698 True 944.000 944 91.168000 1980 2675 1 chr3B.!!$R1 695
3 TraesCS3B01G567200 chr3B 798686144 798687345 1201 False 769.000 1203 90.514000 335 1639 2 chr3B.!!$F4 1304
4 TraesCS3B01G567200 chr3D 595704568 595706158 1590 False 1069.000 1445 92.199000 117 1814 2 chr3D.!!$F4 1697
5 TraesCS3B01G567200 chr3D 500550840 500551539 699 False 1035.000 1035 93.429000 1980 2675 1 chr3D.!!$F1 695
6 TraesCS3B01G567200 chr3D 595738285 595740001 1716 False 998.000 1393 88.164000 1 1828 2 chr3D.!!$F5 1827
7 TraesCS3B01G567200 chr3D 595673542 595675340 1798 False 938.500 1219 89.039500 107 1864 2 chr3D.!!$F3 1757
8 TraesCS3B01G567200 chr3D 595285701 595287060 1359 True 674.500 1057 87.592500 354 1858 2 chr3D.!!$R1 1504
9 TraesCS3B01G567200 chr3D 595301618 595304021 2403 False 564.000 1227 89.603667 1 1858 3 chr3D.!!$F2 1857
10 TraesCS3B01G567200 chr3A 726514900 726516554 1654 False 1002.000 1339 89.463000 1 1752 2 chr3A.!!$F2 1751
11 TraesCS3B01G567200 chr3A 726457491 726459123 1632 False 546.775 1384 90.978000 2 1781 4 chr3A.!!$F1 1779
12 TraesCS3B01G567200 chr3A 726409990 726411476 1486 True 475.000 992 84.627000 110 1755 3 chr3A.!!$R1 1645
13 TraesCS3B01G567200 chr6B 277627267 277627962 695 False 1136.000 1136 96.121000 1980 2675 1 chr6B.!!$F1 695
14 TraesCS3B01G567200 chr4B 586242657 586243319 662 False 1053.000 1053 95.324000 1979 2641 1 chr4B.!!$F1 662
15 TraesCS3B01G567200 chr4D 434983862 434984569 707 True 1040.000 1040 93.239000 1969 2675 1 chr4D.!!$R1 706
16 TraesCS3B01G567200 chr2B 691787715 691788412 697 False 942.000 942 91.143000 1980 2673 1 chr2B.!!$F1 693
17 TraesCS3B01G567200 chr7A 61812350 61813041 691 True 939.000 939 91.198000 1980 2669 1 chr7A.!!$R1 689
18 TraesCS3B01G567200 chr5D 75931231 75931928 697 True 915.000 915 90.415000 1982 2675 1 chr5D.!!$R1 693

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
739 1665 0.171231 GCGTGAGGCCCAATTTCTTC 59.829 55.0 0.0 0.0 34.8 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2365 3314 0.037605 CGGCTTGGACTTCGGTAGTT 60.038 55.0 0.0 0.0 37.17 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
96 97 4.216411 ACGCTGTTGGTACCAATTCTAT 57.784 40.909 29.40 13.30 38.28 1.98
97 98 4.585879 ACGCTGTTGGTACCAATTCTATT 58.414 39.130 29.40 10.65 38.28 1.73
98 99 5.007682 ACGCTGTTGGTACCAATTCTATTT 58.992 37.500 29.40 9.11 38.28 1.40
99 100 6.174760 ACGCTGTTGGTACCAATTCTATTTA 58.825 36.000 29.40 1.39 38.28 1.40
100 101 6.315393 ACGCTGTTGGTACCAATTCTATTTAG 59.685 38.462 29.40 16.83 38.28 1.85
101 102 6.238374 CGCTGTTGGTACCAATTCTATTTAGG 60.238 42.308 29.40 11.23 38.28 2.69
187 518 6.395426 TTTGTGCATTCATTTCTCTTGTCT 57.605 33.333 0.00 0.00 0.00 3.41
191 533 6.073058 TGTGCATTCATTTCTCTTGTCTACAC 60.073 38.462 0.00 0.00 0.00 2.90
343 853 2.800544 ACAGTTTCTGTCGTGTATGTGC 59.199 45.455 0.00 0.00 41.21 4.57
503 1037 7.841956 TGAGACAAATAGGGAAAGTAGAGAAG 58.158 38.462 0.00 0.00 0.00 2.85
670 1596 7.101652 TCTCAAGACTACTTTGTATGCTAGG 57.898 40.000 0.00 0.00 33.70 3.02
671 1597 5.661458 TCAAGACTACTTTGTATGCTAGGC 58.339 41.667 0.00 0.00 33.70 3.93
672 1598 5.422331 TCAAGACTACTTTGTATGCTAGGCT 59.578 40.000 0.00 0.00 33.70 4.58
673 1599 5.941555 AGACTACTTTGTATGCTAGGCTT 57.058 39.130 0.00 0.00 0.00 4.35
674 1600 7.123697 TCAAGACTACTTTGTATGCTAGGCTTA 59.876 37.037 0.00 0.00 33.09 3.09
675 1601 7.045126 AGACTACTTTGTATGCTAGGCTTAG 57.955 40.000 0.00 0.00 0.00 2.18
676 1602 7.899056 AAGACTACTTTGTATGCTAGGCTTAGC 60.899 40.741 20.24 20.24 41.86 3.09
686 1612 2.190578 GGCTTAGCAGTGCCGGAT 59.809 61.111 12.58 0.00 39.71 4.18
687 1613 1.445942 GGCTTAGCAGTGCCGGATA 59.554 57.895 12.58 0.00 39.71 2.59
688 1614 0.880718 GGCTTAGCAGTGCCGGATAC 60.881 60.000 12.58 2.74 39.71 2.24
689 1615 0.179084 GCTTAGCAGTGCCGGATACA 60.179 55.000 12.58 0.00 0.00 2.29
690 1616 1.858091 CTTAGCAGTGCCGGATACAG 58.142 55.000 12.58 0.80 0.00 2.74
691 1617 0.464036 TTAGCAGTGCCGGATACAGG 59.536 55.000 12.58 1.02 0.00 4.00
697 1623 4.256180 GCCGGATACAGGCCCCAG 62.256 72.222 5.05 0.00 46.25 4.45
698 1624 3.560251 CCGGATACAGGCCCCAGG 61.560 72.222 0.00 0.00 0.00 4.45
737 1663 4.002797 GCGTGAGGCCCAATTTCT 57.997 55.556 0.00 0.00 34.80 2.52
738 1664 2.267045 GCGTGAGGCCCAATTTCTT 58.733 52.632 0.00 0.00 34.80 2.52
739 1665 0.171231 GCGTGAGGCCCAATTTCTTC 59.829 55.000 0.00 0.00 34.80 2.87
740 1666 0.811281 CGTGAGGCCCAATTTCTTCC 59.189 55.000 0.00 0.00 0.00 3.46
741 1667 1.614317 CGTGAGGCCCAATTTCTTCCT 60.614 52.381 0.00 0.00 0.00 3.36
742 1668 2.355716 CGTGAGGCCCAATTTCTTCCTA 60.356 50.000 0.00 0.00 0.00 2.94
743 1669 3.282885 GTGAGGCCCAATTTCTTCCTAG 58.717 50.000 0.00 0.00 0.00 3.02
744 1670 3.054361 GTGAGGCCCAATTTCTTCCTAGA 60.054 47.826 0.00 0.00 0.00 2.43
745 1671 3.054361 TGAGGCCCAATTTCTTCCTAGAC 60.054 47.826 0.00 0.00 0.00 2.59
746 1672 3.193782 AGGCCCAATTTCTTCCTAGACT 58.806 45.455 0.00 0.00 0.00 3.24
747 1673 3.054065 AGGCCCAATTTCTTCCTAGACTG 60.054 47.826 0.00 0.00 0.00 3.51
748 1674 3.308473 GGCCCAATTTCTTCCTAGACTGT 60.308 47.826 0.00 0.00 0.00 3.55
749 1675 4.080526 GGCCCAATTTCTTCCTAGACTGTA 60.081 45.833 0.00 0.00 0.00 2.74
750 1676 5.119694 GCCCAATTTCTTCCTAGACTGTAG 58.880 45.833 0.00 0.00 0.00 2.74
751 1677 5.119694 CCCAATTTCTTCCTAGACTGTAGC 58.880 45.833 0.00 0.00 0.00 3.58
752 1678 5.104735 CCCAATTTCTTCCTAGACTGTAGCT 60.105 44.000 0.00 0.00 0.00 3.32
753 1679 6.098409 CCCAATTTCTTCCTAGACTGTAGCTA 59.902 42.308 0.00 0.00 0.00 3.32
754 1680 7.364762 CCCAATTTCTTCCTAGACTGTAGCTAA 60.365 40.741 0.00 0.00 0.00 3.09
755 1681 8.207545 CCAATTTCTTCCTAGACTGTAGCTAAT 58.792 37.037 0.00 0.00 0.00 1.73
756 1682 9.606631 CAATTTCTTCCTAGACTGTAGCTAATT 57.393 33.333 0.00 0.00 0.00 1.40
759 1685 9.476928 TTTCTTCCTAGACTGTAGCTAATTACT 57.523 33.333 0.00 0.00 0.00 2.24
760 1686 8.453238 TCTTCCTAGACTGTAGCTAATTACTG 57.547 38.462 0.00 0.00 0.00 2.74
761 1687 8.053963 TCTTCCTAGACTGTAGCTAATTACTGT 58.946 37.037 0.00 0.00 38.09 3.55
762 1688 7.569639 TCCTAGACTGTAGCTAATTACTGTG 57.430 40.000 0.00 0.00 36.32 3.66
763 1689 6.039493 TCCTAGACTGTAGCTAATTACTGTGC 59.961 42.308 0.00 0.00 36.32 4.57
764 1690 5.661056 AGACTGTAGCTAATTACTGTGCA 57.339 39.130 0.00 0.00 36.32 4.57
765 1691 5.411781 AGACTGTAGCTAATTACTGTGCAC 58.588 41.667 10.75 10.75 36.32 4.57
766 1692 5.047306 AGACTGTAGCTAATTACTGTGCACA 60.047 40.000 20.37 20.37 36.32 4.57
767 1693 5.734720 ACTGTAGCTAATTACTGTGCACAT 58.265 37.500 22.00 13.04 35.31 3.21
768 1694 5.812642 ACTGTAGCTAATTACTGTGCACATC 59.187 40.000 22.00 2.58 35.31 3.06
769 1695 4.803613 TGTAGCTAATTACTGTGCACATCG 59.196 41.667 22.00 12.52 0.00 3.84
770 1696 2.609459 AGCTAATTACTGTGCACATCGC 59.391 45.455 22.00 12.67 42.89 4.58
771 1697 2.609459 GCTAATTACTGTGCACATCGCT 59.391 45.455 22.00 6.90 43.06 4.93
772 1698 3.802139 GCTAATTACTGTGCACATCGCTA 59.198 43.478 22.00 7.69 43.06 4.26
773 1699 4.318121 GCTAATTACTGTGCACATCGCTAC 60.318 45.833 22.00 2.62 43.06 3.58
774 1700 2.734276 TTACTGTGCACATCGCTACA 57.266 45.000 22.00 0.00 43.06 2.74
775 1701 2.278026 TACTGTGCACATCGCTACAG 57.722 50.000 22.00 8.51 46.45 2.74
776 1702 3.128259 CTGTGCACATCGCTACAGT 57.872 52.632 22.00 0.00 41.20 3.55
777 1703 2.278026 CTGTGCACATCGCTACAGTA 57.722 50.000 22.00 0.00 41.20 2.74
778 1704 2.814269 CTGTGCACATCGCTACAGTAT 58.186 47.619 22.00 0.00 41.20 2.12
779 1705 3.964909 CTGTGCACATCGCTACAGTATA 58.035 45.455 22.00 0.00 41.20 1.47
780 1706 4.550422 CTGTGCACATCGCTACAGTATAT 58.450 43.478 22.00 0.00 41.20 0.86
781 1707 4.298332 TGTGCACATCGCTACAGTATATG 58.702 43.478 17.42 0.00 43.06 1.78
782 1708 4.037446 TGTGCACATCGCTACAGTATATGA 59.963 41.667 17.42 0.00 43.06 2.15
783 1709 4.982295 GTGCACATCGCTACAGTATATGAA 59.018 41.667 13.17 0.00 43.06 2.57
784 1710 5.117745 GTGCACATCGCTACAGTATATGAAG 59.882 44.000 13.17 0.00 43.06 3.02
785 1711 5.009610 TGCACATCGCTACAGTATATGAAGA 59.990 40.000 5.23 0.00 43.06 2.87
786 1712 5.570973 GCACATCGCTACAGTATATGAAGAG 59.429 44.000 5.23 0.00 37.77 2.85
787 1713 6.089476 CACATCGCTACAGTATATGAAGAGG 58.911 44.000 5.23 0.00 0.00 3.69
788 1714 5.184096 ACATCGCTACAGTATATGAAGAGGG 59.816 44.000 5.23 0.00 0.00 4.30
789 1715 3.506455 TCGCTACAGTATATGAAGAGGGC 59.494 47.826 0.00 0.00 0.00 5.19
790 1716 3.367498 CGCTACAGTATATGAAGAGGGCC 60.367 52.174 0.00 0.00 0.00 5.80
791 1717 3.055747 GCTACAGTATATGAAGAGGGCCC 60.056 52.174 16.46 16.46 0.00 5.80
792 1718 1.971357 ACAGTATATGAAGAGGGCCCG 59.029 52.381 18.44 0.00 0.00 6.13
793 1719 1.276421 CAGTATATGAAGAGGGCCCGG 59.724 57.143 18.44 0.00 0.00 5.73
794 1720 0.613777 GTATATGAAGAGGGCCCGGG 59.386 60.000 19.09 19.09 0.00 5.73
795 1721 0.546747 TATATGAAGAGGGCCCGGGG 60.547 60.000 25.28 9.31 0.00 5.73
824 1750 1.559065 GGGCTAGTGTGGCACCCTTA 61.559 60.000 16.26 4.05 37.59 2.69
1329 2264 2.362120 GGCCAGCAGTGCCTCATT 60.362 61.111 12.58 0.00 45.70 2.57
1410 2345 1.609794 GTCCACCCTCCTCCTCGTT 60.610 63.158 0.00 0.00 0.00 3.85
1416 2351 1.378778 CCTCCTCCTCGTTCTCCGT 60.379 63.158 0.00 0.00 37.94 4.69
1468 2403 3.750130 GCACATCATTGTCAAGACTCTGT 59.250 43.478 1.53 0.00 32.34 3.41
1470 2405 5.163913 GCACATCATTGTCAAGACTCTGTAC 60.164 44.000 1.53 0.00 32.34 2.90
1525 2460 5.529800 TCGTATACCATCGAGAATGTCAAGA 59.470 40.000 0.00 0.00 33.13 3.02
1531 2466 5.114780 CCATCGAGAATGTCAAGATGAAGT 58.885 41.667 11.87 0.00 40.62 3.01
1611 2546 4.131088 GAGGACGACCGCACCCTC 62.131 72.222 2.39 9.22 41.83 4.30
1631 2566 1.654105 CGCGGACTACAACATTCAGAC 59.346 52.381 0.00 0.00 0.00 3.51
1646 2581 4.395959 TTCAGACAGAAACTACCGTTGT 57.604 40.909 0.00 0.00 32.65 3.32
1678 2613 1.035139 CCTTTGTGGTTGCTGAGCTT 58.965 50.000 5.83 0.00 0.00 3.74
1685 2620 1.246056 GGTTGCTGAGCTTCATGGCA 61.246 55.000 5.83 0.00 34.17 4.92
1764 2706 7.378995 GCGTTATCAGTAAAGTAGTATGGAGTG 59.621 40.741 0.00 0.00 0.00 3.51
1787 2729 6.686253 GTGTCATTCTAGTACTGTACGTTAGC 59.314 42.308 11.97 1.41 0.00 3.09
1789 2737 6.686253 GTCATTCTAGTACTGTACGTTAGCAC 59.314 42.308 11.97 0.00 0.00 4.40
1793 2741 7.848223 TCTAGTACTGTACGTTAGCACATAA 57.152 36.000 11.97 0.00 0.00 1.90
1794 2742 8.442632 TCTAGTACTGTACGTTAGCACATAAT 57.557 34.615 11.97 0.00 0.00 1.28
1795 2743 8.340443 TCTAGTACTGTACGTTAGCACATAATG 58.660 37.037 11.97 0.00 36.58 1.90
1796 2744 6.860080 AGTACTGTACGTTAGCACATAATGT 58.140 36.000 11.97 0.00 44.20 2.71
1797 2745 7.988737 AGTACTGTACGTTAGCACATAATGTA 58.011 34.615 11.97 0.00 42.41 2.29
1798 2746 8.627403 AGTACTGTACGTTAGCACATAATGTAT 58.373 33.333 11.97 0.00 44.06 2.29
1799 2747 7.694388 ACTGTACGTTAGCACATAATGTATG 57.306 36.000 0.00 0.00 44.06 2.39
1800 2748 6.200286 ACTGTACGTTAGCACATAATGTATGC 59.800 38.462 0.00 0.00 44.06 3.14
1802 2750 5.907197 ACGTTAGCACATAATGTATGCTC 57.093 39.130 0.43 0.00 46.68 4.26
1803 2751 5.356426 ACGTTAGCACATAATGTATGCTCA 58.644 37.500 0.43 0.00 46.68 4.26
1804 2752 5.463392 ACGTTAGCACATAATGTATGCTCAG 59.537 40.000 0.43 0.00 46.68 3.35
1805 2753 5.107337 CGTTAGCACATAATGTATGCTCAGG 60.107 44.000 0.43 0.00 46.68 3.86
1806 2754 4.428294 AGCACATAATGTATGCTCAGGT 57.572 40.909 0.00 0.00 46.68 4.00
1807 2755 5.551305 AGCACATAATGTATGCTCAGGTA 57.449 39.130 0.00 0.00 46.68 3.08
1808 2756 6.119240 AGCACATAATGTATGCTCAGGTAT 57.881 37.500 0.00 0.00 46.68 2.73
1809 2757 6.537355 AGCACATAATGTATGCTCAGGTATT 58.463 36.000 0.00 0.00 46.68 1.89
1810 2758 6.429078 AGCACATAATGTATGCTCAGGTATTG 59.571 38.462 0.00 0.00 46.68 1.90
1811 2759 6.205464 GCACATAATGTATGCTCAGGTATTGT 59.795 38.462 0.00 0.00 39.79 2.71
1812 2760 7.255242 GCACATAATGTATGCTCAGGTATTGTT 60.255 37.037 0.00 0.00 39.79 2.83
1813 2761 8.285394 CACATAATGTATGCTCAGGTATTGTTC 58.715 37.037 0.00 0.00 39.79 3.18
1814 2762 7.445402 ACATAATGTATGCTCAGGTATTGTTCC 59.555 37.037 0.00 0.00 39.79 3.62
1815 2763 5.636903 ATGTATGCTCAGGTATTGTTCCT 57.363 39.130 0.00 0.00 35.45 3.36
1816 2764 5.435686 TGTATGCTCAGGTATTGTTCCTT 57.564 39.130 0.00 0.00 32.37 3.36
1817 2765 5.428253 TGTATGCTCAGGTATTGTTCCTTC 58.572 41.667 0.00 0.00 32.37 3.46
1818 2766 4.574674 ATGCTCAGGTATTGTTCCTTCA 57.425 40.909 0.00 0.00 32.37 3.02
1819 2767 4.574674 TGCTCAGGTATTGTTCCTTCAT 57.425 40.909 0.00 0.00 32.37 2.57
1820 2768 5.692115 TGCTCAGGTATTGTTCCTTCATA 57.308 39.130 0.00 0.00 32.37 2.15
1821 2769 5.674525 TGCTCAGGTATTGTTCCTTCATAG 58.325 41.667 0.00 0.00 32.37 2.23
1822 2770 5.189736 TGCTCAGGTATTGTTCCTTCATAGT 59.810 40.000 0.00 0.00 32.37 2.12
1823 2771 6.116126 GCTCAGGTATTGTTCCTTCATAGTT 58.884 40.000 0.00 0.00 32.37 2.24
1824 2772 6.037610 GCTCAGGTATTGTTCCTTCATAGTTG 59.962 42.308 0.00 0.00 32.37 3.16
1825 2773 7.252612 TCAGGTATTGTTCCTTCATAGTTGA 57.747 36.000 0.00 0.00 32.37 3.18
1826 2774 7.685481 TCAGGTATTGTTCCTTCATAGTTGAA 58.315 34.615 0.00 0.00 39.54 2.69
1841 2789 8.997621 TCATAGTTGAAGTATAGTGTGGTTTC 57.002 34.615 0.00 0.00 0.00 2.78
1842 2790 8.590204 TCATAGTTGAAGTATAGTGTGGTTTCA 58.410 33.333 0.00 0.00 0.00 2.69
1843 2791 8.873830 CATAGTTGAAGTATAGTGTGGTTTCAG 58.126 37.037 0.00 0.00 0.00 3.02
1844 2792 6.827727 AGTTGAAGTATAGTGTGGTTTCAGT 58.172 36.000 0.00 0.00 0.00 3.41
1845 2793 7.959175 AGTTGAAGTATAGTGTGGTTTCAGTA 58.041 34.615 0.00 0.00 0.00 2.74
1846 2794 8.426489 AGTTGAAGTATAGTGTGGTTTCAGTAA 58.574 33.333 0.00 0.00 0.00 2.24
1847 2795 9.048446 GTTGAAGTATAGTGTGGTTTCAGTAAA 57.952 33.333 0.00 0.00 0.00 2.01
1848 2796 9.616156 TTGAAGTATAGTGTGGTTTCAGTAAAA 57.384 29.630 0.00 0.00 0.00 1.52
1849 2797 9.048446 TGAAGTATAGTGTGGTTTCAGTAAAAC 57.952 33.333 0.00 0.00 45.46 2.43
1850 2798 9.269453 GAAGTATAGTGTGGTTTCAGTAAAACT 57.731 33.333 1.20 0.00 45.48 2.66
1858 2806 6.870517 GTGGTTTCAGTAAAACTACGTACTG 58.129 40.000 7.44 7.44 45.53 2.74
1859 2807 6.476706 GTGGTTTCAGTAAAACTACGTACTGT 59.523 38.462 12.33 0.00 45.53 3.55
1860 2808 7.010460 GTGGTTTCAGTAAAACTACGTACTGTT 59.990 37.037 12.33 4.41 45.53 3.16
1861 2809 8.194104 TGGTTTCAGTAAAACTACGTACTGTTA 58.806 33.333 12.33 0.00 45.48 2.41
1862 2810 9.196552 GGTTTCAGTAAAACTACGTACTGTTAT 57.803 33.333 12.33 0.00 45.48 1.89
1884 2832 2.238646 TGCTCCGGTATTGTTCCTTCAT 59.761 45.455 0.00 0.00 0.00 2.57
1901 2849 5.542635 TCCTTCATAGTAGAAGTGTGGTGTT 59.457 40.000 0.00 0.00 42.68 3.32
1904 2852 7.228706 CCTTCATAGTAGAAGTGTGGTGTTTTT 59.771 37.037 0.00 0.00 42.68 1.94
1905 2853 7.724305 TCATAGTAGAAGTGTGGTGTTTTTC 57.276 36.000 0.00 0.00 0.00 2.29
1912 2860 4.976224 AGTGTGGTGTTTTTCCAGTAAC 57.024 40.909 0.00 0.00 35.49 2.50
1924 2872 7.658575 TGTTTTTCCAGTAACACTACATACTCC 59.341 37.037 0.00 0.00 30.09 3.85
1927 2875 7.636150 TTCCAGTAACACTACATACTCCTAC 57.364 40.000 0.00 0.00 30.09 3.18
1929 2877 8.094284 TCCAGTAACACTACATACTCCTACTA 57.906 38.462 0.00 0.00 30.09 1.82
1930 2878 8.721479 TCCAGTAACACTACATACTCCTACTAT 58.279 37.037 0.00 0.00 30.09 2.12
1931 2879 9.001542 CCAGTAACACTACATACTCCTACTATC 57.998 40.741 0.00 0.00 30.09 2.08
1932 2880 9.557061 CAGTAACACTACATACTCCTACTATCA 57.443 37.037 0.00 0.00 30.09 2.15
1942 2890 9.809395 ACATACTCCTACTATCATTTAGTAGCA 57.191 33.333 12.32 0.14 43.34 3.49
1945 2893 8.713708 ACTCCTACTATCATTTAGTAGCATGT 57.286 34.615 12.32 8.50 43.34 3.21
1946 2894 9.148879 ACTCCTACTATCATTTAGTAGCATGTT 57.851 33.333 12.32 0.00 43.34 2.71
1956 2904 9.008965 TCATTTAGTAGCATGTTAATGTGTTGT 57.991 29.630 0.00 0.00 36.08 3.32
1957 2905 9.064804 CATTTAGTAGCATGTTAATGTGTTGTG 57.935 33.333 0.00 0.00 36.08 3.33
1958 2906 7.737972 TTAGTAGCATGTTAATGTGTTGTGT 57.262 32.000 0.00 0.00 36.08 3.72
1959 2907 8.834749 TTAGTAGCATGTTAATGTGTTGTGTA 57.165 30.769 0.00 0.00 36.08 2.90
1960 2908 7.364522 AGTAGCATGTTAATGTGTTGTGTAG 57.635 36.000 0.00 0.00 36.08 2.74
1961 2909 6.934645 AGTAGCATGTTAATGTGTTGTGTAGT 59.065 34.615 0.00 0.00 36.08 2.73
1962 2910 6.633500 AGCATGTTAATGTGTTGTGTAGTT 57.367 33.333 0.00 0.00 36.08 2.24
1963 2911 6.668323 AGCATGTTAATGTGTTGTGTAGTTC 58.332 36.000 0.00 0.00 36.08 3.01
1964 2912 6.486657 AGCATGTTAATGTGTTGTGTAGTTCT 59.513 34.615 0.00 0.00 36.08 3.01
1965 2913 7.013274 AGCATGTTAATGTGTTGTGTAGTTCTT 59.987 33.333 0.00 0.00 36.08 2.52
1966 2914 7.647715 GCATGTTAATGTGTTGTGTAGTTCTTT 59.352 33.333 0.00 0.00 36.08 2.52
1967 2915 9.515020 CATGTTAATGTGTTGTGTAGTTCTTTT 57.485 29.630 0.00 0.00 0.00 2.27
1968 2916 9.730420 ATGTTAATGTGTTGTGTAGTTCTTTTC 57.270 29.630 0.00 0.00 0.00 2.29
1969 2917 8.731605 TGTTAATGTGTTGTGTAGTTCTTTTCA 58.268 29.630 0.00 0.00 0.00 2.69
1970 2918 9.221775 GTTAATGTGTTGTGTAGTTCTTTTCAG 57.778 33.333 0.00 0.00 0.00 3.02
1971 2919 5.811399 TGTGTTGTGTAGTTCTTTTCAGG 57.189 39.130 0.00 0.00 0.00 3.86
1972 2920 4.095782 TGTGTTGTGTAGTTCTTTTCAGGC 59.904 41.667 0.00 0.00 0.00 4.85
1973 2921 3.630312 TGTTGTGTAGTTCTTTTCAGGCC 59.370 43.478 0.00 0.00 0.00 5.19
1974 2922 3.569194 TGTGTAGTTCTTTTCAGGCCA 57.431 42.857 5.01 0.00 0.00 5.36
1975 2923 3.892284 TGTGTAGTTCTTTTCAGGCCAA 58.108 40.909 5.01 0.00 0.00 4.52
1976 2924 4.469657 TGTGTAGTTCTTTTCAGGCCAAT 58.530 39.130 5.01 0.00 0.00 3.16
1977 2925 5.626142 TGTGTAGTTCTTTTCAGGCCAATA 58.374 37.500 5.01 0.00 0.00 1.90
2043 2991 1.573108 AGGAGAAGAGAATTGCCCGA 58.427 50.000 0.00 0.00 0.00 5.14
2070 3018 3.492337 TGACGGAAAACCAGGCTAAAAT 58.508 40.909 0.00 0.00 0.00 1.82
2259 3208 4.323477 CCCTCCGCCAACGACCAA 62.323 66.667 0.00 0.00 43.93 3.67
2329 3278 2.497273 ACTTCAAAGCAACCAAGCAACT 59.503 40.909 0.00 0.00 36.85 3.16
2365 3314 3.524648 GACACGCCGGGAAGAACCA 62.525 63.158 2.18 0.00 41.20 3.67
2527 3476 3.288290 CGTAGCCGGCTCCGAGAT 61.288 66.667 35.01 11.82 42.83 2.75
2540 3489 1.699054 CCGAGATGATGCCCCCAAGA 61.699 60.000 0.00 0.00 0.00 3.02
2645 3599 2.047274 CCACGGCGACACTTCCAT 60.047 61.111 16.62 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 0.320073 GTACCAACAGCGTACAGGCA 60.320 55.000 0.00 0.00 36.82 4.75
101 102 3.064324 GAGGCATGGGTGTGGCAC 61.064 66.667 11.55 11.55 46.19 5.01
191 533 7.902917 TGATGAAAAGTAAATCATACGCTTTCG 59.097 33.333 0.00 0.00 36.45 3.46
323 832 2.157668 GGCACATACACGACAGAAACTG 59.842 50.000 0.00 0.00 37.52 3.16
324 833 2.224185 TGGCACATACACGACAGAAACT 60.224 45.455 0.00 0.00 0.00 2.66
325 834 2.139917 TGGCACATACACGACAGAAAC 58.860 47.619 0.00 0.00 0.00 2.78
503 1037 0.040425 AGCAACAAACATCGCCGTTC 60.040 50.000 0.00 0.00 0.00 3.95
565 1099 9.797642 ATGGTATTATCAATCAAGTGATGCTTA 57.202 29.630 3.35 0.00 38.69 3.09
641 1562 8.317679 AGCATACAAAGTAGTCTTGAGAAATCT 58.682 33.333 0.00 0.00 33.79 2.40
646 1569 6.405953 GCCTAGCATACAAAGTAGTCTTGAGA 60.406 42.308 0.00 0.00 33.79 3.27
670 1596 0.179084 TGTATCCGGCACTGCTAAGC 60.179 55.000 0.00 0.00 0.00 3.09
671 1597 1.539065 CCTGTATCCGGCACTGCTAAG 60.539 57.143 0.00 0.00 0.00 2.18
672 1598 0.464036 CCTGTATCCGGCACTGCTAA 59.536 55.000 0.00 0.00 0.00 3.09
673 1599 2.028125 GCCTGTATCCGGCACTGCTA 62.028 60.000 0.00 0.00 46.77 3.49
674 1600 2.903357 CCTGTATCCGGCACTGCT 59.097 61.111 0.00 0.00 0.00 4.24
675 1601 2.897350 GCCTGTATCCGGCACTGC 60.897 66.667 0.00 1.08 46.77 4.40
680 1606 4.256180 CTGGGGCCTGTATCCGGC 62.256 72.222 0.84 0.00 46.83 6.13
681 1607 3.560251 CCTGGGGCCTGTATCCGG 61.560 72.222 0.84 0.00 0.00 5.14
682 1608 4.256180 GCCTGGGGCCTGTATCCG 62.256 72.222 0.84 0.00 44.06 4.18
720 1646 0.171231 GAAGAAATTGGGCCTCACGC 59.829 55.000 4.53 0.00 0.00 5.34
721 1647 0.811281 GGAAGAAATTGGGCCTCACG 59.189 55.000 4.53 0.00 0.00 4.35
722 1648 2.222227 AGGAAGAAATTGGGCCTCAC 57.778 50.000 4.53 0.00 0.00 3.51
723 1649 3.054361 GTCTAGGAAGAAATTGGGCCTCA 60.054 47.826 4.53 0.00 32.16 3.86
724 1650 3.201045 AGTCTAGGAAGAAATTGGGCCTC 59.799 47.826 4.53 0.00 32.16 4.70
725 1651 3.054065 CAGTCTAGGAAGAAATTGGGCCT 60.054 47.826 4.53 0.00 32.16 5.19
726 1652 3.282885 CAGTCTAGGAAGAAATTGGGCC 58.717 50.000 0.00 0.00 32.16 5.80
727 1653 3.956744 ACAGTCTAGGAAGAAATTGGGC 58.043 45.455 0.00 0.00 32.16 5.36
728 1654 5.104735 AGCTACAGTCTAGGAAGAAATTGGG 60.105 44.000 0.00 0.00 32.16 4.12
729 1655 5.983540 AGCTACAGTCTAGGAAGAAATTGG 58.016 41.667 0.00 0.00 32.16 3.16
730 1656 9.606631 AATTAGCTACAGTCTAGGAAGAAATTG 57.393 33.333 0.00 0.00 32.16 2.32
733 1659 9.476928 AGTAATTAGCTACAGTCTAGGAAGAAA 57.523 33.333 0.00 0.00 32.16 2.52
734 1660 8.904834 CAGTAATTAGCTACAGTCTAGGAAGAA 58.095 37.037 0.00 0.00 32.16 2.52
735 1661 8.053963 ACAGTAATTAGCTACAGTCTAGGAAGA 58.946 37.037 0.00 0.00 0.00 2.87
736 1662 8.132362 CACAGTAATTAGCTACAGTCTAGGAAG 58.868 40.741 0.00 0.00 0.00 3.46
737 1663 7.416438 GCACAGTAATTAGCTACAGTCTAGGAA 60.416 40.741 0.00 0.00 0.00 3.36
738 1664 6.039493 GCACAGTAATTAGCTACAGTCTAGGA 59.961 42.308 0.00 0.00 0.00 2.94
739 1665 6.183360 TGCACAGTAATTAGCTACAGTCTAGG 60.183 42.308 0.00 0.00 0.00 3.02
740 1666 6.693545 GTGCACAGTAATTAGCTACAGTCTAG 59.306 42.308 13.17 0.00 0.00 2.43
741 1667 6.152154 TGTGCACAGTAATTAGCTACAGTCTA 59.848 38.462 17.42 0.00 0.00 2.59
742 1668 5.047306 TGTGCACAGTAATTAGCTACAGTCT 60.047 40.000 17.42 0.00 0.00 3.24
743 1669 5.168569 TGTGCACAGTAATTAGCTACAGTC 58.831 41.667 17.42 0.00 0.00 3.51
744 1670 5.147330 TGTGCACAGTAATTAGCTACAGT 57.853 39.130 17.42 0.00 0.00 3.55
745 1671 5.051441 CGATGTGCACAGTAATTAGCTACAG 60.051 44.000 25.84 0.00 0.00 2.74
746 1672 4.803613 CGATGTGCACAGTAATTAGCTACA 59.196 41.667 25.84 0.00 0.00 2.74
747 1673 4.318121 GCGATGTGCACAGTAATTAGCTAC 60.318 45.833 25.84 0.45 45.45 3.58
748 1674 3.802139 GCGATGTGCACAGTAATTAGCTA 59.198 43.478 25.84 0.00 45.45 3.32
749 1675 2.609459 GCGATGTGCACAGTAATTAGCT 59.391 45.455 25.84 4.40 45.45 3.32
750 1676 2.974165 GCGATGTGCACAGTAATTAGC 58.026 47.619 25.84 15.46 45.45 3.09
762 1688 5.461526 TCTTCATATACTGTAGCGATGTGC 58.538 41.667 0.00 0.00 46.98 4.57
763 1689 6.089476 CCTCTTCATATACTGTAGCGATGTG 58.911 44.000 0.00 0.00 0.00 3.21
764 1690 5.184096 CCCTCTTCATATACTGTAGCGATGT 59.816 44.000 0.00 0.00 0.00 3.06
765 1691 5.645624 CCCTCTTCATATACTGTAGCGATG 58.354 45.833 0.00 0.00 0.00 3.84
766 1692 4.158764 GCCCTCTTCATATACTGTAGCGAT 59.841 45.833 0.00 0.00 0.00 4.58
767 1693 3.506455 GCCCTCTTCATATACTGTAGCGA 59.494 47.826 0.00 0.00 0.00 4.93
768 1694 3.367498 GGCCCTCTTCATATACTGTAGCG 60.367 52.174 0.00 0.00 0.00 4.26
769 1695 3.055747 GGGCCCTCTTCATATACTGTAGC 60.056 52.174 17.04 0.00 0.00 3.58
770 1696 3.193691 CGGGCCCTCTTCATATACTGTAG 59.806 52.174 22.43 0.00 0.00 2.74
771 1697 3.162666 CGGGCCCTCTTCATATACTGTA 58.837 50.000 22.43 0.00 0.00 2.74
772 1698 1.971357 CGGGCCCTCTTCATATACTGT 59.029 52.381 22.43 0.00 0.00 3.55
773 1699 1.276421 CCGGGCCCTCTTCATATACTG 59.724 57.143 22.43 0.00 0.00 2.74
774 1700 1.645710 CCGGGCCCTCTTCATATACT 58.354 55.000 22.43 0.00 0.00 2.12
775 1701 0.613777 CCCGGGCCCTCTTCATATAC 59.386 60.000 22.43 0.00 0.00 1.47
776 1702 0.546747 CCCCGGGCCCTCTTCATATA 60.547 60.000 22.43 0.00 0.00 0.86
777 1703 1.847968 CCCCGGGCCCTCTTCATAT 60.848 63.158 22.43 0.00 0.00 1.78
778 1704 2.447765 CCCCGGGCCCTCTTCATA 60.448 66.667 22.43 0.00 0.00 2.15
800 1726 2.203070 GCCACACTAGCCCATCGG 60.203 66.667 0.00 0.00 0.00 4.18
801 1727 1.815421 GTGCCACACTAGCCCATCG 60.815 63.158 0.00 0.00 0.00 3.84
802 1728 1.452108 GGTGCCACACTAGCCCATC 60.452 63.158 0.00 0.00 34.40 3.51
803 1729 2.677228 GGTGCCACACTAGCCCAT 59.323 61.111 0.00 0.00 34.40 4.00
804 1730 3.646715 GGGTGCCACACTAGCCCA 61.647 66.667 0.00 0.00 39.13 5.36
805 1731 1.559065 TAAGGGTGCCACACTAGCCC 61.559 60.000 0.00 0.00 39.60 5.19
806 1732 0.546598 ATAAGGGTGCCACACTAGCC 59.453 55.000 0.00 0.00 27.20 3.93
807 1733 2.092914 AGAATAAGGGTGCCACACTAGC 60.093 50.000 0.00 0.00 27.20 3.42
808 1734 3.055094 ACAGAATAAGGGTGCCACACTAG 60.055 47.826 0.00 0.00 27.20 2.57
852 1778 7.547227 ACAGTACAAGCAAAAAGAGAAATGTT 58.453 30.769 0.00 0.00 0.00 2.71
1302 2237 1.533753 CTGCTGGCCCTTGGGAAAA 60.534 57.895 10.36 0.00 0.00 2.29
1329 2264 0.102120 CCAGCTGTTTGTTGGCGAAA 59.898 50.000 13.81 0.00 40.11 3.46
1410 2345 2.043248 GGCCTACAGGGACGGAGA 60.043 66.667 0.00 0.00 37.23 3.71
1453 2388 3.162666 TCCCGTACAGAGTCTTGACAAT 58.837 45.455 3.49 0.00 0.00 2.71
1525 2460 3.118956 CCTTCCTGCTCGTAGAACTTCAT 60.119 47.826 0.00 0.00 34.09 2.57
1531 2466 0.246635 GTGCCTTCCTGCTCGTAGAA 59.753 55.000 0.00 0.00 34.09 2.10
1611 2546 1.654105 GTCTGAATGTTGTAGTCCGCG 59.346 52.381 0.00 0.00 0.00 6.46
1631 2566 4.992319 TCACCATAACAACGGTAGTTTCTG 59.008 41.667 0.00 0.00 38.79 3.02
1646 2581 2.294791 CCACAAAGGCGTTTCACCATAA 59.705 45.455 0.42 0.00 0.00 1.90
1685 2620 4.420522 AAAACTGGTTGTTGAATGGCAT 57.579 36.364 0.00 0.00 39.13 4.40
1764 2706 6.686253 GTGCTAACGTACAGTACTAGAATGAC 59.314 42.308 9.10 0.00 0.00 3.06
1787 2729 7.734924 ACAATACCTGAGCATACATTATGTG 57.265 36.000 8.26 0.00 38.43 3.21
1789 2737 7.663081 AGGAACAATACCTGAGCATACATTATG 59.337 37.037 0.00 0.00 36.30 1.90
1793 2741 5.636903 AGGAACAATACCTGAGCATACAT 57.363 39.130 0.00 0.00 36.30 2.29
1794 2742 5.045942 TGAAGGAACAATACCTGAGCATACA 60.046 40.000 0.00 0.00 37.85 2.29
1795 2743 5.428253 TGAAGGAACAATACCTGAGCATAC 58.572 41.667 0.00 0.00 37.85 2.39
1796 2744 5.692115 TGAAGGAACAATACCTGAGCATA 57.308 39.130 0.00 0.00 37.85 3.14
1797 2745 4.574674 TGAAGGAACAATACCTGAGCAT 57.425 40.909 0.00 0.00 37.85 3.79
1798 2746 4.574674 ATGAAGGAACAATACCTGAGCA 57.425 40.909 0.00 0.00 37.85 4.26
1799 2747 5.675538 ACTATGAAGGAACAATACCTGAGC 58.324 41.667 0.00 0.00 37.85 4.26
1800 2748 7.331026 TCAACTATGAAGGAACAATACCTGAG 58.669 38.462 0.00 0.00 37.85 3.35
1801 2749 7.252612 TCAACTATGAAGGAACAATACCTGA 57.747 36.000 0.00 0.00 37.85 3.86
1802 2750 7.921786 TTCAACTATGAAGGAACAATACCTG 57.078 36.000 0.00 0.00 40.59 4.00
1815 2763 9.431887 GAAACCACACTATACTTCAACTATGAA 57.568 33.333 0.00 0.00 43.18 2.57
1816 2764 8.590204 TGAAACCACACTATACTTCAACTATGA 58.410 33.333 0.00 0.00 0.00 2.15
1817 2765 8.771920 TGAAACCACACTATACTTCAACTATG 57.228 34.615 0.00 0.00 0.00 2.23
1818 2766 8.594550 ACTGAAACCACACTATACTTCAACTAT 58.405 33.333 0.00 0.00 0.00 2.12
1819 2767 7.959175 ACTGAAACCACACTATACTTCAACTA 58.041 34.615 0.00 0.00 0.00 2.24
1820 2768 6.827727 ACTGAAACCACACTATACTTCAACT 58.172 36.000 0.00 0.00 0.00 3.16
1821 2769 8.597662 TTACTGAAACCACACTATACTTCAAC 57.402 34.615 0.00 0.00 0.00 3.18
1822 2770 9.616156 TTTTACTGAAACCACACTATACTTCAA 57.384 29.630 0.00 0.00 0.00 2.69
1823 2771 9.048446 GTTTTACTGAAACCACACTATACTTCA 57.952 33.333 0.00 0.00 41.43 3.02
1839 2787 8.702438 GCAATAACAGTACGTAGTTTTACTGAA 58.298 33.333 17.46 8.35 45.51 3.02
1840 2788 8.084073 AGCAATAACAGTACGTAGTTTTACTGA 58.916 33.333 17.46 1.20 45.51 3.41
1842 2790 7.543520 GGAGCAATAACAGTACGTAGTTTTACT 59.456 37.037 10.42 4.90 37.78 2.24
1843 2791 7.461938 CGGAGCAATAACAGTACGTAGTTTTAC 60.462 40.741 10.42 0.79 37.78 2.01
1844 2792 6.527722 CGGAGCAATAACAGTACGTAGTTTTA 59.472 38.462 10.58 10.58 37.78 1.52
1845 2793 5.346822 CGGAGCAATAACAGTACGTAGTTTT 59.653 40.000 0.00 3.52 37.78 2.43
1846 2794 4.860907 CGGAGCAATAACAGTACGTAGTTT 59.139 41.667 0.00 2.17 37.78 2.66
1847 2795 4.418392 CGGAGCAATAACAGTACGTAGTT 58.582 43.478 0.00 2.81 37.78 2.24
1849 2797 3.181493 ACCGGAGCAATAACAGTACGTAG 60.181 47.826 9.46 0.00 0.00 3.51
1850 2798 2.754552 ACCGGAGCAATAACAGTACGTA 59.245 45.455 9.46 0.00 0.00 3.57
1851 2799 1.547372 ACCGGAGCAATAACAGTACGT 59.453 47.619 9.46 0.00 0.00 3.57
1852 2800 2.288961 ACCGGAGCAATAACAGTACG 57.711 50.000 9.46 0.00 0.00 3.67
1853 2801 5.114081 ACAATACCGGAGCAATAACAGTAC 58.886 41.667 9.46 0.00 0.00 2.73
1854 2802 5.347620 ACAATACCGGAGCAATAACAGTA 57.652 39.130 9.46 0.00 0.00 2.74
1855 2803 4.216411 ACAATACCGGAGCAATAACAGT 57.784 40.909 9.46 0.00 0.00 3.55
1856 2804 4.035208 GGAACAATACCGGAGCAATAACAG 59.965 45.833 9.46 0.00 0.00 3.16
1857 2805 3.942748 GGAACAATACCGGAGCAATAACA 59.057 43.478 9.46 0.00 0.00 2.41
1858 2806 4.196971 AGGAACAATACCGGAGCAATAAC 58.803 43.478 9.46 0.00 0.00 1.89
1859 2807 4.497291 AGGAACAATACCGGAGCAATAA 57.503 40.909 9.46 0.00 0.00 1.40
1860 2808 4.080807 TGAAGGAACAATACCGGAGCAATA 60.081 41.667 9.46 0.00 0.00 1.90
1861 2809 3.279434 GAAGGAACAATACCGGAGCAAT 58.721 45.455 9.46 0.00 0.00 3.56
1862 2810 2.039216 TGAAGGAACAATACCGGAGCAA 59.961 45.455 9.46 0.00 0.00 3.91
1884 2832 5.991861 TGGAAAAACACCACACTTCTACTA 58.008 37.500 0.00 0.00 32.03 1.82
1901 2849 7.549147 AGGAGTATGTAGTGTTACTGGAAAA 57.451 36.000 0.00 0.00 0.00 2.29
1904 2852 6.966751 AGTAGGAGTATGTAGTGTTACTGGA 58.033 40.000 0.00 0.00 0.00 3.86
1905 2853 8.921353 ATAGTAGGAGTATGTAGTGTTACTGG 57.079 38.462 0.00 0.00 0.00 4.00
1930 2878 9.008965 ACAACACATTAACATGCTACTAAATGA 57.991 29.630 0.00 0.00 33.05 2.57
1931 2879 9.064804 CACAACACATTAACATGCTACTAAATG 57.935 33.333 0.00 0.00 33.05 2.32
1932 2880 8.792633 ACACAACACATTAACATGCTACTAAAT 58.207 29.630 0.00 0.00 33.05 1.40
1933 2881 8.160521 ACACAACACATTAACATGCTACTAAA 57.839 30.769 0.00 0.00 33.05 1.85
1934 2882 7.737972 ACACAACACATTAACATGCTACTAA 57.262 32.000 0.00 0.00 33.05 2.24
1935 2883 8.092068 ACTACACAACACATTAACATGCTACTA 58.908 33.333 0.00 0.00 33.05 1.82
1936 2884 6.934645 ACTACACAACACATTAACATGCTACT 59.065 34.615 0.00 0.00 33.05 2.57
1937 2885 7.129109 ACTACACAACACATTAACATGCTAC 57.871 36.000 0.00 0.00 33.05 3.58
1938 2886 7.659799 AGAACTACACAACACATTAACATGCTA 59.340 33.333 0.00 0.00 33.05 3.49
1939 2887 6.486657 AGAACTACACAACACATTAACATGCT 59.513 34.615 0.00 0.00 33.05 3.79
1940 2888 6.668323 AGAACTACACAACACATTAACATGC 58.332 36.000 0.00 0.00 33.05 4.06
1941 2889 9.515020 AAAAGAACTACACAACACATTAACATG 57.485 29.630 0.00 0.00 36.34 3.21
1942 2890 9.730420 GAAAAGAACTACACAACACATTAACAT 57.270 29.630 0.00 0.00 0.00 2.71
1943 2891 8.731605 TGAAAAGAACTACACAACACATTAACA 58.268 29.630 0.00 0.00 0.00 2.41
1944 2892 9.221775 CTGAAAAGAACTACACAACACATTAAC 57.778 33.333 0.00 0.00 0.00 2.01
1945 2893 8.402472 CCTGAAAAGAACTACACAACACATTAA 58.598 33.333 0.00 0.00 0.00 1.40
1946 2894 7.468084 GCCTGAAAAGAACTACACAACACATTA 60.468 37.037 0.00 0.00 0.00 1.90
1947 2895 6.680378 GCCTGAAAAGAACTACACAACACATT 60.680 38.462 0.00 0.00 0.00 2.71
1948 2896 5.221048 GCCTGAAAAGAACTACACAACACAT 60.221 40.000 0.00 0.00 0.00 3.21
1949 2897 4.095782 GCCTGAAAAGAACTACACAACACA 59.904 41.667 0.00 0.00 0.00 3.72
1950 2898 4.497507 GGCCTGAAAAGAACTACACAACAC 60.498 45.833 0.00 0.00 0.00 3.32
1951 2899 3.630312 GGCCTGAAAAGAACTACACAACA 59.370 43.478 0.00 0.00 0.00 3.33
1952 2900 3.630312 TGGCCTGAAAAGAACTACACAAC 59.370 43.478 3.32 0.00 0.00 3.32
1953 2901 3.892284 TGGCCTGAAAAGAACTACACAA 58.108 40.909 3.32 0.00 0.00 3.33
1954 2902 3.569194 TGGCCTGAAAAGAACTACACA 57.431 42.857 3.32 0.00 0.00 3.72
1955 2903 5.705905 AGTATTGGCCTGAAAAGAACTACAC 59.294 40.000 3.32 0.00 0.00 2.90
1956 2904 5.876357 AGTATTGGCCTGAAAAGAACTACA 58.124 37.500 3.32 0.00 0.00 2.74
1957 2905 6.819397 AAGTATTGGCCTGAAAAGAACTAC 57.181 37.500 3.32 0.00 0.00 2.73
1958 2906 7.833285 AAAAGTATTGGCCTGAAAAGAACTA 57.167 32.000 3.32 0.00 0.00 2.24
1959 2907 6.731292 AAAAGTATTGGCCTGAAAAGAACT 57.269 33.333 3.32 0.00 0.00 3.01
2043 2991 4.086457 AGCCTGGTTTTCCGTCAATTAAT 58.914 39.130 0.00 0.00 44.36 1.40
2070 3018 1.057471 TGTGGGTTGGGTTGTATCGA 58.943 50.000 0.00 0.00 0.00 3.59
2250 3199 4.072088 GGCGCTCGTTGGTCGTTG 62.072 66.667 7.64 0.00 40.80 4.10
2259 3208 3.685214 GACGATGACAGGCGCTCGT 62.685 63.158 18.30 18.30 46.09 4.18
2329 3278 2.636412 CCGAGGTGCTCTTCCGTGA 61.636 63.158 0.00 0.00 0.00 4.35
2365 3314 0.037605 CGGCTTGGACTTCGGTAGTT 60.038 55.000 0.00 0.00 37.17 2.24
2527 3476 0.549902 TCTCCTTCTTGGGGGCATCA 60.550 55.000 0.00 0.00 36.78 3.07
2540 3489 1.666311 CGTCTTCGCGTCTTTCTCCTT 60.666 52.381 5.77 0.00 0.00 3.36
2645 3599 2.349590 CGCAGGTGTCATGATCTTTCA 58.650 47.619 0.00 0.00 36.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.