Multiple sequence alignment - TraesCS3B01G566900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G566900 chr3B 100.000 3356 0 0 1226 4581 798551830 798548475 0.000000e+00 6198
1 TraesCS3B01G566900 chr3B 86.025 2755 296 50 1243 3961 251181635 251184336 0.000000e+00 2872
2 TraesCS3B01G566900 chr3B 85.027 2765 318 49 1243 3961 251267583 251270297 0.000000e+00 2724
3 TraesCS3B01G566900 chr3B 100.000 1057 0 0 1 1057 798553055 798551999 0.000000e+00 1953
4 TraesCS3B01G566900 chr3B 95.065 770 30 3 1 769 621476104 621475342 0.000000e+00 1205
5 TraesCS3B01G566900 chr3B 89.767 215 12 4 1284 1489 798557347 798557134 2.720000e-67 267
6 TraesCS3B01G566900 chr3D 97.514 3017 65 7 1227 4236 595112266 595109253 0.000000e+00 5147
7 TraesCS3B01G566900 chr3D 92.340 235 16 2 1255 1489 595187912 595187680 2.640000e-87 333
8 TraesCS3B01G566900 chr3A 97.445 3014 63 4 1233 4236 726141935 726138926 0.000000e+00 5127
9 TraesCS3B01G566900 chr3A 90.040 251 14 4 818 1057 726142241 726141991 9.570000e-82 315
10 TraesCS3B01G566900 chr3A 93.103 203 9 2 1292 1489 726146066 726145864 4.480000e-75 292
11 TraesCS3B01G566900 chr3A 93.103 203 9 2 1292 1489 726147452 726147250 4.480000e-75 292
12 TraesCS3B01G566900 chr3A 93.103 203 9 2 1292 1489 726148838 726148636 4.480000e-75 292
13 TraesCS3B01G566900 chr4B 94.675 770 33 2 1 769 81363097 81362335 0.000000e+00 1188
14 TraesCS3B01G566900 chr4B 94.148 769 37 2 1 768 604539967 604539206 0.000000e+00 1164
15 TraesCS3B01G566900 chr2B 94.882 762 31 2 1 761 543196120 543196874 0.000000e+00 1184
16 TraesCS3B01G566900 chr6B 94.531 768 34 2 1 767 641301613 641300853 0.000000e+00 1179
17 TraesCS3B01G566900 chr1D 94.286 770 34 5 1 769 461900369 461901129 0.000000e+00 1170
18 TraesCS3B01G566900 chr1D 94.141 768 35 4 1 767 486402069 486402827 0.000000e+00 1160
19 TraesCS3B01G566900 chr4D 93.920 773 37 4 1 771 28487926 28488690 0.000000e+00 1158
20 TraesCS3B01G566900 chr1B 93.920 773 38 3 1 772 72803548 72804312 0.000000e+00 1158
21 TraesCS3B01G566900 chr1B 82.479 234 17 9 818 1030 156248337 156248567 2.810000e-42 183
22 TraesCS3B01G566900 chr1B 86.364 154 15 4 4231 4381 242740179 242740029 3.670000e-36 163


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G566900 chr3B 798548475 798553055 4580 True 4075.5 6198 100.0000 1 4581 2 chr3B.!!$R3 4580
1 TraesCS3B01G566900 chr3B 251181635 251184336 2701 False 2872.0 2872 86.0250 1243 3961 1 chr3B.!!$F1 2718
2 TraesCS3B01G566900 chr3B 251267583 251270297 2714 False 2724.0 2724 85.0270 1243 3961 1 chr3B.!!$F2 2718
3 TraesCS3B01G566900 chr3B 621475342 621476104 762 True 1205.0 1205 95.0650 1 769 1 chr3B.!!$R1 768
4 TraesCS3B01G566900 chr3D 595109253 595112266 3013 True 5147.0 5147 97.5140 1227 4236 1 chr3D.!!$R1 3009
5 TraesCS3B01G566900 chr3A 726138926 726148838 9912 True 1263.6 5127 93.3588 818 4236 5 chr3A.!!$R1 3418
6 TraesCS3B01G566900 chr4B 81362335 81363097 762 True 1188.0 1188 94.6750 1 769 1 chr4B.!!$R1 768
7 TraesCS3B01G566900 chr4B 604539206 604539967 761 True 1164.0 1164 94.1480 1 768 1 chr4B.!!$R2 767
8 TraesCS3B01G566900 chr2B 543196120 543196874 754 False 1184.0 1184 94.8820 1 761 1 chr2B.!!$F1 760
9 TraesCS3B01G566900 chr6B 641300853 641301613 760 True 1179.0 1179 94.5310 1 767 1 chr6B.!!$R1 766
10 TraesCS3B01G566900 chr1D 461900369 461901129 760 False 1170.0 1170 94.2860 1 769 1 chr1D.!!$F1 768
11 TraesCS3B01G566900 chr1D 486402069 486402827 758 False 1160.0 1160 94.1410 1 767 1 chr1D.!!$F2 766
12 TraesCS3B01G566900 chr4D 28487926 28488690 764 False 1158.0 1158 93.9200 1 771 1 chr4D.!!$F1 770
13 TraesCS3B01G566900 chr1B 72803548 72804312 764 False 1158.0 1158 93.9200 1 772 1 chr1B.!!$F1 771

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
882 6670 0.249741 AACTCAAGTCCAACCGACCG 60.250 55.000 0.0 0.0 43.08 4.79 F
2262 8072 0.534412 AGAACGATGGAGGAGCACAG 59.466 55.000 0.0 0.0 0.00 3.66 F
2748 8558 1.152030 TGGTCCAGCTCCACTTCCT 60.152 57.895 0.0 0.0 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2881 8694 0.540365 AGAGGTTGGTGCATGTTGGG 60.540 55.0 0.0 0.0 0.00 4.12 R
3409 9222 0.473755 TTTGCTCCTTCAGACTGCCA 59.526 50.0 0.0 0.0 0.00 4.92 R
4465 10301 0.105964 CGGACAACCACCAACTCAGA 59.894 55.0 0.0 0.0 35.59 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 7.658179 TCGTTTTTACTCTCTCGTAGTCTAA 57.342 36.000 0.00 0.00 0.00 2.10
99 100 8.441312 AGTTTTTAGGTTGTTCATCGTCTTTA 57.559 30.769 0.00 0.00 0.00 1.85
105 106 4.682860 GGTTGTTCATCGTCTTTACTTCGA 59.317 41.667 0.00 0.00 37.96 3.71
141 142 5.637810 ACAACGCTGAATAAAGATTCTTCGA 59.362 36.000 0.00 0.00 41.87 3.71
160 161 2.159085 CGAATCCTTTCCTAACGAGGCT 60.159 50.000 0.00 0.00 43.40 4.58
183 184 1.518367 GGTCCTATGGTTGGGGATGA 58.482 55.000 0.00 0.00 0.00 2.92
188 189 5.399727 GGTCCTATGGTTGGGGATGAATTTA 60.400 44.000 0.00 0.00 0.00 1.40
196 197 5.425217 GGTTGGGGATGAATTTAGAAACCAT 59.575 40.000 0.00 0.00 35.66 3.55
411 412 3.073650 GGATGGCAGATATGGTTTCCTCT 59.926 47.826 0.00 0.00 0.00 3.69
798 800 8.675705 AAGGGGAAAGTAAAAATGAAAATGTG 57.324 30.769 0.00 0.00 0.00 3.21
801 803 7.875554 GGGGAAAGTAAAAATGAAAATGTGCTA 59.124 33.333 0.00 0.00 0.00 3.49
804 806 9.255304 GAAAGTAAAAATGAAAATGTGCTACCA 57.745 29.630 0.00 0.00 0.00 3.25
805 807 9.606631 AAAGTAAAAATGAAAATGTGCTACCAA 57.393 25.926 0.00 0.00 0.00 3.67
806 808 9.606631 AAGTAAAAATGAAAATGTGCTACCAAA 57.393 25.926 0.00 0.00 0.00 3.28
808 810 9.040939 GTAAAAATGAAAATGTGCTACCAAAGT 57.959 29.630 0.00 0.00 0.00 2.66
810 812 8.587952 AAAATGAAAATGTGCTACCAAAGTAC 57.412 30.769 0.00 0.00 40.92 2.73
811 813 5.699097 TGAAAATGTGCTACCAAAGTACC 57.301 39.130 0.00 0.00 39.88 3.34
812 814 5.133941 TGAAAATGTGCTACCAAAGTACCA 58.866 37.500 0.00 0.00 39.88 3.25
813 815 5.594725 TGAAAATGTGCTACCAAAGTACCAA 59.405 36.000 0.00 0.00 39.88 3.67
814 816 6.096987 TGAAAATGTGCTACCAAAGTACCAAA 59.903 34.615 0.00 0.00 39.88 3.28
815 817 5.705609 AATGTGCTACCAAAGTACCAAAG 57.294 39.130 0.00 0.00 39.88 2.77
816 818 2.882137 TGTGCTACCAAAGTACCAAAGC 59.118 45.455 0.00 0.00 39.88 3.51
817 819 2.228103 GTGCTACCAAAGTACCAAAGCC 59.772 50.000 0.00 0.00 34.96 4.35
818 820 2.107552 TGCTACCAAAGTACCAAAGCCT 59.892 45.455 0.00 0.00 0.00 4.58
820 822 1.892209 ACCAAAGTACCAAAGCCTCG 58.108 50.000 0.00 0.00 0.00 4.63
821 823 1.418637 ACCAAAGTACCAAAGCCTCGA 59.581 47.619 0.00 0.00 0.00 4.04
855 6636 1.737008 GGACCGACTTCGACTTGGC 60.737 63.158 0.00 0.00 43.02 4.52
856 6637 1.737008 GACCGACTTCGACTTGGCC 60.737 63.158 0.00 0.00 43.02 5.36
857 6638 2.434359 CCGACTTCGACTTGGCCC 60.434 66.667 0.00 0.00 43.02 5.80
859 6640 2.654877 GACTTCGACTTGGCCCGA 59.345 61.111 0.00 0.00 0.00 5.14
860 6641 1.218316 GACTTCGACTTGGCCCGAT 59.782 57.895 0.00 0.00 34.58 4.18
862 6643 1.521681 CTTCGACTTGGCCCGATCC 60.522 63.158 0.00 0.00 34.58 3.36
863 6644 2.238847 CTTCGACTTGGCCCGATCCA 62.239 60.000 0.00 0.00 34.58 3.41
864 6645 1.832719 TTCGACTTGGCCCGATCCAA 61.833 55.000 0.00 7.86 43.36 3.53
865 6646 2.106683 CGACTTGGCCCGATCCAAC 61.107 63.158 0.00 0.00 40.92 3.77
866 6647 1.299976 GACTTGGCCCGATCCAACT 59.700 57.895 0.00 0.00 40.92 3.16
882 6670 0.249741 AACTCAAGTCCAACCGACCG 60.250 55.000 0.00 0.00 43.08 4.79
883 6671 1.111116 ACTCAAGTCCAACCGACCGA 61.111 55.000 0.00 0.00 43.08 4.69
908 6697 4.074970 TCTTCTCTTCACCTTGCCAAATC 58.925 43.478 0.00 0.00 0.00 2.17
956 6745 2.530661 ACCCACCCCCACAATCGA 60.531 61.111 0.00 0.00 0.00 3.59
1840 7650 1.683917 ACATCTACTCGAGGGTGATGC 59.316 52.381 28.23 0.00 38.33 3.91
1905 7715 1.375326 GACCAAGGACCTCACCACC 59.625 63.158 0.00 0.00 0.00 4.61
1941 7751 2.683933 AACCGGCTCGAGTGGGAT 60.684 61.111 24.66 13.93 0.00 3.85
2184 7994 2.019984 GCCAAGGATGTTGAGATGGAC 58.980 52.381 0.00 0.00 0.00 4.02
2262 8072 0.534412 AGAACGATGGAGGAGCACAG 59.466 55.000 0.00 0.00 0.00 3.66
2544 8354 3.687698 ACATTATTGGTCTTGCACGTACC 59.312 43.478 4.66 4.66 0.00 3.34
2631 8441 3.836562 AGAAAAAGGATGAGCAGCCAAAT 59.163 39.130 7.59 0.00 39.89 2.32
2694 8504 1.901591 CCACTCAGGCAATGTCTGTT 58.098 50.000 14.99 0.25 36.55 3.16
2748 8558 1.152030 TGGTCCAGCTCCACTTCCT 60.152 57.895 0.00 0.00 0.00 3.36
2761 8571 3.329889 TTCCTCGGCCTGGCATGT 61.330 61.111 22.05 0.00 0.00 3.21
2881 8694 2.880890 GGAGTTCCACCACATATGATGC 59.119 50.000 10.38 0.00 35.64 3.91
3409 9222 3.643320 TCCAATCACTCTCAGACACAGTT 59.357 43.478 0.00 0.00 0.00 3.16
3693 9518 7.201679 CCTTCTGGATTCTTGTATCATGTGTTC 60.202 40.741 0.00 0.00 34.57 3.18
3970 9806 9.868277 CTGGGATGTTCTCTTATATGTATCTTC 57.132 37.037 0.00 0.00 0.00 2.87
4012 9848 4.002982 CTGCACTGCATCAGTAAAGGTAA 58.997 43.478 3.64 0.00 43.43 2.85
4069 9905 5.951747 TGGAAAGCCTATTATTGCAGTTCTT 59.048 36.000 0.00 0.00 34.31 2.52
4073 9909 9.455847 GAAAGCCTATTATTGCAGTTCTTATTG 57.544 33.333 0.00 0.00 0.00 1.90
4217 10053 5.179045 ACTTAATTATGCATGCAGTGAGC 57.821 39.130 26.69 0.00 45.96 4.26
4231 10067 2.433604 CAGTGAGCAGGGATGAGTATGT 59.566 50.000 0.00 0.00 0.00 2.29
4233 10069 3.118482 AGTGAGCAGGGATGAGTATGTTG 60.118 47.826 0.00 0.00 0.00 3.33
4234 10070 2.216898 GAGCAGGGATGAGTATGTTGC 58.783 52.381 0.00 0.00 0.00 4.17
4235 10071 1.842562 AGCAGGGATGAGTATGTTGCT 59.157 47.619 0.00 0.00 35.75 3.91
4236 10072 1.945394 GCAGGGATGAGTATGTTGCTG 59.055 52.381 0.00 0.00 0.00 4.41
4237 10073 2.569059 CAGGGATGAGTATGTTGCTGG 58.431 52.381 0.00 0.00 0.00 4.85
4238 10074 1.133976 AGGGATGAGTATGTTGCTGGC 60.134 52.381 0.00 0.00 0.00 4.85
4239 10075 1.408683 GGGATGAGTATGTTGCTGGCA 60.409 52.381 0.00 0.00 0.00 4.92
4240 10076 1.945394 GGATGAGTATGTTGCTGGCAG 59.055 52.381 10.94 10.94 0.00 4.85
4241 10077 2.636830 GATGAGTATGTTGCTGGCAGT 58.363 47.619 17.16 0.00 0.00 4.40
4242 10078 2.099141 TGAGTATGTTGCTGGCAGTC 57.901 50.000 17.16 9.10 0.00 3.51
4243 10079 1.347378 TGAGTATGTTGCTGGCAGTCA 59.653 47.619 17.16 11.74 0.00 3.41
4244 10080 2.026915 TGAGTATGTTGCTGGCAGTCAT 60.027 45.455 17.16 18.54 0.00 3.06
4245 10081 3.197549 TGAGTATGTTGCTGGCAGTCATA 59.802 43.478 17.16 17.63 0.00 2.15
4246 10082 4.191544 GAGTATGTTGCTGGCAGTCATAA 58.808 43.478 17.16 4.10 31.82 1.90
4247 10083 4.194640 AGTATGTTGCTGGCAGTCATAAG 58.805 43.478 17.16 0.00 31.82 1.73
4248 10084 2.566833 TGTTGCTGGCAGTCATAAGT 57.433 45.000 17.16 0.00 0.00 2.24
4249 10085 2.862541 TGTTGCTGGCAGTCATAAGTT 58.137 42.857 17.16 0.00 0.00 2.66
4250 10086 2.553602 TGTTGCTGGCAGTCATAAGTTG 59.446 45.455 17.16 0.00 0.00 3.16
4251 10087 2.813754 GTTGCTGGCAGTCATAAGTTGA 59.186 45.455 17.16 0.00 0.00 3.18
4252 10088 3.354948 TGCTGGCAGTCATAAGTTGAT 57.645 42.857 17.16 0.00 36.54 2.57
4253 10089 3.689347 TGCTGGCAGTCATAAGTTGATT 58.311 40.909 17.16 0.00 36.54 2.57
4254 10090 3.691118 TGCTGGCAGTCATAAGTTGATTC 59.309 43.478 17.16 0.00 36.54 2.52
4255 10091 3.065925 GCTGGCAGTCATAAGTTGATTCC 59.934 47.826 17.16 0.00 36.54 3.01
4256 10092 4.521146 CTGGCAGTCATAAGTTGATTCCT 58.479 43.478 6.28 0.00 36.54 3.36
4257 10093 4.264253 TGGCAGTCATAAGTTGATTCCTG 58.736 43.478 0.00 0.00 36.54 3.86
4258 10094 4.263462 TGGCAGTCATAAGTTGATTCCTGT 60.263 41.667 0.00 0.00 36.54 4.00
4259 10095 5.045942 TGGCAGTCATAAGTTGATTCCTGTA 60.046 40.000 0.00 0.00 36.54 2.74
4260 10096 5.525378 GGCAGTCATAAGTTGATTCCTGTAG 59.475 44.000 0.00 0.00 36.54 2.74
4261 10097 5.525378 GCAGTCATAAGTTGATTCCTGTAGG 59.475 44.000 0.00 0.00 36.54 3.18
4262 10098 6.644347 CAGTCATAAGTTGATTCCTGTAGGT 58.356 40.000 0.00 0.00 36.54 3.08
4263 10099 7.106239 CAGTCATAAGTTGATTCCTGTAGGTT 58.894 38.462 0.00 0.00 36.54 3.50
4264 10100 8.258007 CAGTCATAAGTTGATTCCTGTAGGTTA 58.742 37.037 0.00 0.00 36.54 2.85
4265 10101 8.993424 AGTCATAAGTTGATTCCTGTAGGTTAT 58.007 33.333 0.00 0.00 36.54 1.89
4266 10102 9.046296 GTCATAAGTTGATTCCTGTAGGTTATG 57.954 37.037 0.00 3.94 36.54 1.90
4267 10103 7.715249 TCATAAGTTGATTCCTGTAGGTTATGC 59.285 37.037 0.00 0.00 36.34 3.14
4268 10104 5.435686 AGTTGATTCCTGTAGGTTATGCA 57.564 39.130 0.00 0.00 36.34 3.96
4269 10105 6.006275 AGTTGATTCCTGTAGGTTATGCAT 57.994 37.500 3.79 3.79 36.34 3.96
4270 10106 6.426587 AGTTGATTCCTGTAGGTTATGCATT 58.573 36.000 3.54 0.00 36.34 3.56
4271 10107 6.891908 AGTTGATTCCTGTAGGTTATGCATTT 59.108 34.615 3.54 0.00 36.34 2.32
4272 10108 8.052748 AGTTGATTCCTGTAGGTTATGCATTTA 58.947 33.333 3.54 0.00 36.34 1.40
4273 10109 8.682710 GTTGATTCCTGTAGGTTATGCATTTAA 58.317 33.333 3.54 0.00 36.34 1.52
4274 10110 8.995027 TGATTCCTGTAGGTTATGCATTTAAT 57.005 30.769 3.54 0.00 36.34 1.40
4275 10111 9.420118 TGATTCCTGTAGGTTATGCATTTAATT 57.580 29.630 3.54 0.00 36.34 1.40
4278 10114 8.815565 TCCTGTAGGTTATGCATTTAATTTCA 57.184 30.769 3.54 0.00 36.34 2.69
4279 10115 9.420118 TCCTGTAGGTTATGCATTTAATTTCAT 57.580 29.630 3.54 0.00 36.34 2.57
4280 10116 9.467258 CCTGTAGGTTATGCATTTAATTTCATG 57.533 33.333 3.54 0.00 0.00 3.07
4338 10174 8.997621 AAAATCGTGATATTATACCGCATAGT 57.002 30.769 0.00 0.00 0.00 2.12
4339 10175 7.987268 AATCGTGATATTATACCGCATAGTG 57.013 36.000 0.00 0.00 0.00 2.74
4340 10176 6.505044 TCGTGATATTATACCGCATAGTGT 57.495 37.500 0.00 0.00 0.00 3.55
4341 10177 6.916440 TCGTGATATTATACCGCATAGTGTT 58.084 36.000 0.00 0.00 0.00 3.32
4342 10178 7.372714 TCGTGATATTATACCGCATAGTGTTT 58.627 34.615 0.00 0.00 0.00 2.83
4343 10179 7.327518 TCGTGATATTATACCGCATAGTGTTTG 59.672 37.037 0.00 0.00 0.00 2.93
4344 10180 7.411480 CGTGATATTATACCGCATAGTGTTTGG 60.411 40.741 0.00 0.00 0.00 3.28
4345 10181 7.386848 GTGATATTATACCGCATAGTGTTTGGT 59.613 37.037 0.00 0.00 36.72 3.67
4346 10182 7.601130 TGATATTATACCGCATAGTGTTTGGTC 59.399 37.037 0.00 0.00 34.18 4.02
4347 10183 3.620427 ATACCGCATAGTGTTTGGTCA 57.380 42.857 0.00 0.00 34.18 4.02
4348 10184 2.264005 ACCGCATAGTGTTTGGTCAA 57.736 45.000 0.00 0.00 0.00 3.18
4349 10185 1.877443 ACCGCATAGTGTTTGGTCAAC 59.123 47.619 0.00 0.00 35.71 3.18
4350 10186 1.876799 CCGCATAGTGTTTGGTCAACA 59.123 47.619 0.00 0.00 43.55 3.33
4363 10199 8.856153 TGTTTGGTCAACATACACATATAGTT 57.144 30.769 0.00 0.00 40.71 2.24
4364 10200 8.726068 TGTTTGGTCAACATACACATATAGTTG 58.274 33.333 0.00 0.00 40.71 3.16
4365 10201 8.941977 GTTTGGTCAACATACACATATAGTTGA 58.058 33.333 0.00 0.00 44.25 3.18
4366 10202 9.679661 TTTGGTCAACATACACATATAGTTGAT 57.320 29.630 9.18 0.00 46.78 2.57
4367 10203 9.679661 TTGGTCAACATACACATATAGTTGATT 57.320 29.630 9.18 0.00 46.78 2.57
4368 10204 9.108284 TGGTCAACATACACATATAGTTGATTG 57.892 33.333 9.18 0.00 46.78 2.67
4369 10205 9.325198 GGTCAACATACACATATAGTTGATTGA 57.675 33.333 9.18 0.00 46.78 2.57
4399 10235 8.472007 TGATAAATTAACCAACTTGTTCCAGT 57.528 30.769 0.00 0.00 0.00 4.00
4400 10236 8.356657 TGATAAATTAACCAACTTGTTCCAGTG 58.643 33.333 0.00 0.00 0.00 3.66
4401 10237 6.538945 AAATTAACCAACTTGTTCCAGTGT 57.461 33.333 0.00 0.00 0.00 3.55
4402 10238 5.767816 ATTAACCAACTTGTTCCAGTGTC 57.232 39.130 0.00 0.00 0.00 3.67
4403 10239 2.052782 ACCAACTTGTTCCAGTGTCC 57.947 50.000 0.00 0.00 0.00 4.02
4404 10240 1.283613 ACCAACTTGTTCCAGTGTCCA 59.716 47.619 0.00 0.00 0.00 4.02
4405 10241 2.091885 ACCAACTTGTTCCAGTGTCCAT 60.092 45.455 0.00 0.00 0.00 3.41
4406 10242 3.137544 ACCAACTTGTTCCAGTGTCCATA 59.862 43.478 0.00 0.00 0.00 2.74
4407 10243 3.753272 CCAACTTGTTCCAGTGTCCATAG 59.247 47.826 0.00 0.00 0.00 2.23
4408 10244 4.389374 CAACTTGTTCCAGTGTCCATAGT 58.611 43.478 0.00 0.00 0.00 2.12
4409 10245 5.512404 CCAACTTGTTCCAGTGTCCATAGTA 60.512 44.000 0.00 0.00 0.00 1.82
4410 10246 5.818678 ACTTGTTCCAGTGTCCATAGTAA 57.181 39.130 0.00 0.00 0.00 2.24
4411 10247 6.182507 ACTTGTTCCAGTGTCCATAGTAAA 57.817 37.500 0.00 0.00 0.00 2.01
4412 10248 6.779860 ACTTGTTCCAGTGTCCATAGTAAAT 58.220 36.000 0.00 0.00 0.00 1.40
4413 10249 6.655003 ACTTGTTCCAGTGTCCATAGTAAATG 59.345 38.462 0.00 0.00 0.00 2.32
4414 10250 6.367374 TGTTCCAGTGTCCATAGTAAATGA 57.633 37.500 0.00 0.00 0.00 2.57
4415 10251 6.774673 TGTTCCAGTGTCCATAGTAAATGAA 58.225 36.000 0.00 0.00 0.00 2.57
4416 10252 7.402054 TGTTCCAGTGTCCATAGTAAATGAAT 58.598 34.615 0.00 0.00 0.00 2.57
4417 10253 7.336679 TGTTCCAGTGTCCATAGTAAATGAATG 59.663 37.037 0.00 0.00 0.00 2.67
4418 10254 6.356556 TCCAGTGTCCATAGTAAATGAATGG 58.643 40.000 0.00 0.00 41.33 3.16
4419 10255 6.157820 TCCAGTGTCCATAGTAAATGAATGGA 59.842 38.462 0.00 0.00 45.36 3.41
4425 10261 6.769512 TCCATAGTAAATGAATGGAGTAGGC 58.230 40.000 0.00 0.00 43.27 3.93
4426 10262 6.328934 TCCATAGTAAATGAATGGAGTAGGCA 59.671 38.462 0.00 0.00 43.27 4.75
4427 10263 6.428159 CCATAGTAAATGAATGGAGTAGGCAC 59.572 42.308 0.00 0.00 42.36 5.01
4428 10264 5.435686 AGTAAATGAATGGAGTAGGCACA 57.564 39.130 0.00 0.00 0.00 4.57
4429 10265 5.815581 AGTAAATGAATGGAGTAGGCACAA 58.184 37.500 0.00 0.00 0.00 3.33
4430 10266 6.245408 AGTAAATGAATGGAGTAGGCACAAA 58.755 36.000 0.00 0.00 0.00 2.83
4431 10267 6.891908 AGTAAATGAATGGAGTAGGCACAAAT 59.108 34.615 0.00 0.00 0.00 2.32
4432 10268 5.841957 AATGAATGGAGTAGGCACAAATC 57.158 39.130 0.00 0.00 0.00 2.17
4433 10269 4.299586 TGAATGGAGTAGGCACAAATCA 57.700 40.909 0.00 0.00 0.00 2.57
4434 10270 4.009675 TGAATGGAGTAGGCACAAATCAC 58.990 43.478 0.00 0.00 0.00 3.06
4435 10271 4.263462 TGAATGGAGTAGGCACAAATCACT 60.263 41.667 0.00 0.00 0.00 3.41
4436 10272 3.057969 TGGAGTAGGCACAAATCACTG 57.942 47.619 0.00 0.00 0.00 3.66
4437 10273 1.740025 GGAGTAGGCACAAATCACTGC 59.260 52.381 0.00 0.00 0.00 4.40
4438 10274 2.426522 GAGTAGGCACAAATCACTGCA 58.573 47.619 0.00 0.00 34.90 4.41
4439 10275 3.012518 GAGTAGGCACAAATCACTGCAT 58.987 45.455 0.00 0.00 34.90 3.96
4440 10276 3.012518 AGTAGGCACAAATCACTGCATC 58.987 45.455 0.00 0.00 34.90 3.91
4441 10277 1.913778 AGGCACAAATCACTGCATCA 58.086 45.000 0.00 0.00 34.90 3.07
4442 10278 2.241160 AGGCACAAATCACTGCATCAA 58.759 42.857 0.00 0.00 34.90 2.57
4443 10279 2.629137 AGGCACAAATCACTGCATCAAA 59.371 40.909 0.00 0.00 34.90 2.69
4444 10280 3.259876 AGGCACAAATCACTGCATCAAAT 59.740 39.130 0.00 0.00 34.90 2.32
4445 10281 3.615496 GGCACAAATCACTGCATCAAATC 59.385 43.478 0.00 0.00 34.90 2.17
4446 10282 4.491676 GCACAAATCACTGCATCAAATCT 58.508 39.130 0.00 0.00 33.31 2.40
4447 10283 4.927425 GCACAAATCACTGCATCAAATCTT 59.073 37.500 0.00 0.00 33.31 2.40
4448 10284 5.407387 GCACAAATCACTGCATCAAATCTTT 59.593 36.000 0.00 0.00 33.31 2.52
4449 10285 6.400727 GCACAAATCACTGCATCAAATCTTTC 60.401 38.462 0.00 0.00 33.31 2.62
4450 10286 6.090358 CACAAATCACTGCATCAAATCTTTCC 59.910 38.462 0.00 0.00 0.00 3.13
4451 10287 6.014840 ACAAATCACTGCATCAAATCTTTCCT 60.015 34.615 0.00 0.00 0.00 3.36
4452 10288 7.177216 ACAAATCACTGCATCAAATCTTTCCTA 59.823 33.333 0.00 0.00 0.00 2.94
4453 10289 6.690194 ATCACTGCATCAAATCTTTCCTAC 57.310 37.500 0.00 0.00 0.00 3.18
4454 10290 5.809001 TCACTGCATCAAATCTTTCCTACT 58.191 37.500 0.00 0.00 0.00 2.57
4455 10291 6.240894 TCACTGCATCAAATCTTTCCTACTT 58.759 36.000 0.00 0.00 0.00 2.24
4456 10292 7.394016 TCACTGCATCAAATCTTTCCTACTTA 58.606 34.615 0.00 0.00 0.00 2.24
4457 10293 8.049117 TCACTGCATCAAATCTTTCCTACTTAT 58.951 33.333 0.00 0.00 0.00 1.73
4458 10294 9.330063 CACTGCATCAAATCTTTCCTACTTATA 57.670 33.333 0.00 0.00 0.00 0.98
4459 10295 9.905713 ACTGCATCAAATCTTTCCTACTTATAA 57.094 29.630 0.00 0.00 0.00 0.98
4482 10318 7.865706 AAATATATCTGAGTTGGTGGTTGTC 57.134 36.000 0.00 0.00 0.00 3.18
4483 10319 2.568623 ATCTGAGTTGGTGGTTGTCC 57.431 50.000 0.00 0.00 0.00 4.02
4484 10320 0.105964 TCTGAGTTGGTGGTTGTCCG 59.894 55.000 0.00 0.00 36.30 4.79
4485 10321 0.179056 CTGAGTTGGTGGTTGTCCGT 60.179 55.000 0.00 0.00 36.30 4.69
4486 10322 0.253610 TGAGTTGGTGGTTGTCCGTT 59.746 50.000 0.00 0.00 36.30 4.44
4487 10323 0.942252 GAGTTGGTGGTTGTCCGTTC 59.058 55.000 0.00 0.00 36.30 3.95
4488 10324 0.253610 AGTTGGTGGTTGTCCGTTCA 59.746 50.000 0.00 0.00 36.30 3.18
4489 10325 0.379316 GTTGGTGGTTGTCCGTTCAC 59.621 55.000 0.00 0.00 36.30 3.18
4490 10326 3.740513 GGTGGTTGTCCGTTCACC 58.259 61.111 0.00 0.00 42.11 4.02
4491 10327 1.147600 GGTGGTTGTCCGTTCACCT 59.852 57.895 0.00 0.00 44.43 4.00
4492 10328 0.393820 GGTGGTTGTCCGTTCACCTA 59.606 55.000 0.00 0.00 44.43 3.08
4493 10329 1.002773 GGTGGTTGTCCGTTCACCTAT 59.997 52.381 0.00 0.00 44.43 2.57
4494 10330 2.551504 GGTGGTTGTCCGTTCACCTATT 60.552 50.000 0.00 0.00 44.43 1.73
4495 10331 3.306919 GGTGGTTGTCCGTTCACCTATTA 60.307 47.826 0.00 0.00 44.43 0.98
4496 10332 4.510571 GTGGTTGTCCGTTCACCTATTAT 58.489 43.478 0.00 0.00 36.30 1.28
4497 10333 4.569564 GTGGTTGTCCGTTCACCTATTATC 59.430 45.833 0.00 0.00 36.30 1.75
4498 10334 4.124970 GGTTGTCCGTTCACCTATTATCC 58.875 47.826 0.00 0.00 0.00 2.59
4499 10335 4.383335 GGTTGTCCGTTCACCTATTATCCA 60.383 45.833 0.00 0.00 0.00 3.41
4500 10336 5.365619 GTTGTCCGTTCACCTATTATCCAT 58.634 41.667 0.00 0.00 0.00 3.41
4501 10337 5.209818 TGTCCGTTCACCTATTATCCATC 57.790 43.478 0.00 0.00 0.00 3.51
4502 10338 4.039973 TGTCCGTTCACCTATTATCCATCC 59.960 45.833 0.00 0.00 0.00 3.51
4503 10339 4.283722 GTCCGTTCACCTATTATCCATCCT 59.716 45.833 0.00 0.00 0.00 3.24
4504 10340 4.527038 TCCGTTCACCTATTATCCATCCTC 59.473 45.833 0.00 0.00 0.00 3.71
4505 10341 4.528596 CCGTTCACCTATTATCCATCCTCT 59.471 45.833 0.00 0.00 0.00 3.69
4506 10342 5.012148 CCGTTCACCTATTATCCATCCTCTT 59.988 44.000 0.00 0.00 0.00 2.85
4507 10343 6.159988 CGTTCACCTATTATCCATCCTCTTC 58.840 44.000 0.00 0.00 0.00 2.87
4508 10344 6.015010 CGTTCACCTATTATCCATCCTCTTCT 60.015 42.308 0.00 0.00 0.00 2.85
4509 10345 7.176865 CGTTCACCTATTATCCATCCTCTTCTA 59.823 40.741 0.00 0.00 0.00 2.10
4510 10346 8.871125 GTTCACCTATTATCCATCCTCTTCTAA 58.129 37.037 0.00 0.00 0.00 2.10
4511 10347 9.447279 TTCACCTATTATCCATCCTCTTCTAAA 57.553 33.333 0.00 0.00 0.00 1.85
4512 10348 9.447279 TCACCTATTATCCATCCTCTTCTAAAA 57.553 33.333 0.00 0.00 0.00 1.52
4521 10357 8.213518 TCCATCCTCTTCTAAAATTTGAATCG 57.786 34.615 0.00 0.00 0.00 3.34
4522 10358 7.283127 TCCATCCTCTTCTAAAATTTGAATCGG 59.717 37.037 0.00 0.00 0.00 4.18
4523 10359 7.283127 CCATCCTCTTCTAAAATTTGAATCGGA 59.717 37.037 0.00 2.05 30.99 4.55
4524 10360 7.611213 TCCTCTTCTAAAATTTGAATCGGAC 57.389 36.000 0.00 0.00 0.00 4.79
4525 10361 7.165485 TCCTCTTCTAAAATTTGAATCGGACA 58.835 34.615 0.00 0.00 0.00 4.02
4526 10362 7.663905 TCCTCTTCTAAAATTTGAATCGGACAA 59.336 33.333 0.00 0.00 0.00 3.18
4527 10363 7.750903 CCTCTTCTAAAATTTGAATCGGACAAC 59.249 37.037 0.00 0.00 0.00 3.32
4528 10364 8.160521 TCTTCTAAAATTTGAATCGGACAACA 57.839 30.769 0.00 0.00 0.00 3.33
4529 10365 8.792633 TCTTCTAAAATTTGAATCGGACAACAT 58.207 29.630 0.00 0.00 0.00 2.71
4530 10366 9.410556 CTTCTAAAATTTGAATCGGACAACATT 57.589 29.630 0.00 0.00 0.00 2.71
4531 10367 9.757227 TTCTAAAATTTGAATCGGACAACATTT 57.243 25.926 0.00 0.00 0.00 2.32
4532 10368 9.757227 TCTAAAATTTGAATCGGACAACATTTT 57.243 25.926 0.00 1.88 35.31 1.82
4534 10370 8.430801 AAAATTTGAATCGGACAACATTTTCA 57.569 26.923 0.00 0.00 31.33 2.69
4535 10371 8.606040 AAATTTGAATCGGACAACATTTTCAT 57.394 26.923 0.00 0.00 0.00 2.57
4536 10372 7.585286 ATTTGAATCGGACAACATTTTCATG 57.415 32.000 0.00 0.00 36.34 3.07
4537 10373 4.484236 TGAATCGGACAACATTTTCATGC 58.516 39.130 0.00 0.00 33.05 4.06
4538 10374 3.508744 ATCGGACAACATTTTCATGCC 57.491 42.857 0.00 0.00 33.05 4.40
4539 10375 2.234143 TCGGACAACATTTTCATGCCA 58.766 42.857 0.00 0.00 33.05 4.92
4540 10376 2.625314 TCGGACAACATTTTCATGCCAA 59.375 40.909 0.00 0.00 33.05 4.52
4541 10377 3.068732 TCGGACAACATTTTCATGCCAAA 59.931 39.130 0.00 0.00 33.05 3.28
4542 10378 3.429543 CGGACAACATTTTCATGCCAAAG 59.570 43.478 0.00 0.00 33.05 2.77
4543 10379 3.187022 GGACAACATTTTCATGCCAAAGC 59.813 43.478 0.00 0.00 40.48 3.51
4544 10380 4.060205 GACAACATTTTCATGCCAAAGCT 58.940 39.130 0.00 0.00 40.80 3.74
4545 10381 4.060205 ACAACATTTTCATGCCAAAGCTC 58.940 39.130 0.00 0.00 40.80 4.09
4546 10382 4.059511 CAACATTTTCATGCCAAAGCTCA 58.940 39.130 0.00 0.00 40.80 4.26
4547 10383 4.546829 ACATTTTCATGCCAAAGCTCAT 57.453 36.364 0.00 0.00 40.80 2.90
4548 10384 4.901868 ACATTTTCATGCCAAAGCTCATT 58.098 34.783 0.00 0.00 40.80 2.57
4549 10385 4.693566 ACATTTTCATGCCAAAGCTCATTG 59.306 37.500 0.00 0.00 40.80 2.82
4550 10386 4.603989 TTTTCATGCCAAAGCTCATTGA 57.396 36.364 0.00 0.00 40.80 2.57
4551 10387 4.603989 TTTCATGCCAAAGCTCATTGAA 57.396 36.364 0.00 0.00 40.80 2.69
4552 10388 4.811969 TTCATGCCAAAGCTCATTGAAT 57.188 36.364 0.00 0.00 40.80 2.57
4553 10389 4.380841 TCATGCCAAAGCTCATTGAATC 57.619 40.909 0.00 0.00 40.80 2.52
4554 10390 4.021229 TCATGCCAAAGCTCATTGAATCT 58.979 39.130 0.00 0.00 40.80 2.40
4555 10391 4.464951 TCATGCCAAAGCTCATTGAATCTT 59.535 37.500 0.00 0.00 40.80 2.40
4556 10392 4.182693 TGCCAAAGCTCATTGAATCTTG 57.817 40.909 0.00 0.00 40.80 3.02
4557 10393 3.827876 TGCCAAAGCTCATTGAATCTTGA 59.172 39.130 0.00 0.00 40.80 3.02
4558 10394 4.082408 TGCCAAAGCTCATTGAATCTTGAG 60.082 41.667 0.00 8.68 41.84 3.02
4559 10395 4.157289 GCCAAAGCTCATTGAATCTTGAGA 59.843 41.667 14.80 0.00 41.53 3.27
4560 10396 5.676584 GCCAAAGCTCATTGAATCTTGAGAG 60.677 44.000 14.80 3.91 41.53 3.20
4561 10397 5.333513 CAAAGCTCATTGAATCTTGAGAGC 58.666 41.667 14.80 11.69 46.47 4.09
4562 10398 3.589061 GCTCATTGAATCTTGAGAGCG 57.411 47.619 14.80 0.00 41.53 5.03
4563 10399 3.193263 GCTCATTGAATCTTGAGAGCGA 58.807 45.455 14.80 0.00 41.53 4.93
4564 10400 3.620374 GCTCATTGAATCTTGAGAGCGAA 59.380 43.478 14.80 0.00 41.53 4.70
4565 10401 4.260294 GCTCATTGAATCTTGAGAGCGAAG 60.260 45.833 14.80 0.00 41.53 3.79
4566 10402 4.186926 TCATTGAATCTTGAGAGCGAAGG 58.813 43.478 0.00 0.00 0.00 3.46
4567 10403 2.015736 TGAATCTTGAGAGCGAAGGC 57.984 50.000 0.00 0.00 40.37 4.35
4568 10404 1.276138 TGAATCTTGAGAGCGAAGGCA 59.724 47.619 0.00 0.00 43.41 4.75
4569 10405 1.932511 GAATCTTGAGAGCGAAGGCAG 59.067 52.381 0.00 0.00 43.41 4.85
4570 10406 0.177604 ATCTTGAGAGCGAAGGCAGG 59.822 55.000 0.00 0.00 43.41 4.85
4571 10407 0.900182 TCTTGAGAGCGAAGGCAGGA 60.900 55.000 0.00 0.00 43.41 3.86
4572 10408 0.177604 CTTGAGAGCGAAGGCAGGAT 59.822 55.000 0.00 0.00 43.41 3.24
4573 10409 0.176680 TTGAGAGCGAAGGCAGGATC 59.823 55.000 0.00 0.00 43.41 3.36
4574 10410 0.685785 TGAGAGCGAAGGCAGGATCT 60.686 55.000 0.00 0.00 43.41 2.75
4575 10411 1.323412 GAGAGCGAAGGCAGGATCTA 58.677 55.000 0.00 0.00 43.41 1.98
4576 10412 1.000717 GAGAGCGAAGGCAGGATCTAC 60.001 57.143 0.00 0.00 43.41 2.59
4577 10413 0.747255 GAGCGAAGGCAGGATCTACA 59.253 55.000 0.00 0.00 43.41 2.74
4578 10414 0.749649 AGCGAAGGCAGGATCTACAG 59.250 55.000 0.00 0.00 43.41 2.74
4579 10415 0.747255 GCGAAGGCAGGATCTACAGA 59.253 55.000 0.00 0.00 39.62 3.41
4580 10416 1.537135 GCGAAGGCAGGATCTACAGAC 60.537 57.143 0.00 0.00 39.62 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 6.937436 AAGACGATGAACAACCTAAAAACT 57.063 33.333 0.00 0.00 0.00 2.66
105 106 2.803670 CGTTGTCATCGTCGCCGT 60.804 61.111 0.00 0.00 35.01 5.68
160 161 1.221007 TCCCCAACCATAGGACCGATA 59.779 52.381 0.00 0.00 0.00 2.92
183 184 7.725251 TGCTTGAACAGAATGGTTTCTAAATT 58.275 30.769 0.00 0.00 33.00 1.82
188 189 4.038402 CCTTGCTTGAACAGAATGGTTTCT 59.962 41.667 0.00 0.00 33.00 2.52
196 197 1.888512 GCCATCCTTGCTTGAACAGAA 59.111 47.619 0.00 0.00 0.00 3.02
369 370 2.281484 GAACCACGAGCCCAGCAA 60.281 61.111 0.00 0.00 0.00 3.91
411 412 0.860533 CCACGACTAAAACGCCGAAA 59.139 50.000 0.00 0.00 0.00 3.46
639 641 0.464036 TCTGAGCTTGACACCAACGT 59.536 50.000 0.00 0.00 0.00 3.99
772 774 9.771534 CACATTTTCATTTTTACTTTCCCCTTA 57.228 29.630 0.00 0.00 0.00 2.69
773 775 7.228507 GCACATTTTCATTTTTACTTTCCCCTT 59.771 33.333 0.00 0.00 0.00 3.95
774 776 6.710295 GCACATTTTCATTTTTACTTTCCCCT 59.290 34.615 0.00 0.00 0.00 4.79
775 777 6.710295 AGCACATTTTCATTTTTACTTTCCCC 59.290 34.615 0.00 0.00 0.00 4.81
776 778 7.728847 AGCACATTTTCATTTTTACTTTCCC 57.271 32.000 0.00 0.00 0.00 3.97
779 781 9.606631 TTGGTAGCACATTTTCATTTTTACTTT 57.393 25.926 0.00 0.00 0.00 2.66
780 782 9.606631 TTTGGTAGCACATTTTCATTTTTACTT 57.393 25.926 0.00 0.00 0.00 2.24
781 783 9.260002 CTTTGGTAGCACATTTTCATTTTTACT 57.740 29.630 0.00 0.00 0.00 2.24
782 784 9.040939 ACTTTGGTAGCACATTTTCATTTTTAC 57.959 29.630 0.00 0.00 0.00 2.01
785 787 7.655732 GGTACTTTGGTAGCACATTTTCATTTT 59.344 33.333 0.00 0.00 43.51 1.82
786 788 7.151976 GGTACTTTGGTAGCACATTTTCATTT 58.848 34.615 0.00 0.00 43.51 2.32
787 789 6.687604 GGTACTTTGGTAGCACATTTTCATT 58.312 36.000 0.00 0.00 43.51 2.57
788 790 6.267496 GGTACTTTGGTAGCACATTTTCAT 57.733 37.500 0.00 0.00 43.51 2.57
789 791 5.699097 GGTACTTTGGTAGCACATTTTCA 57.301 39.130 0.00 0.00 43.51 2.69
798 800 2.747989 GAGGCTTTGGTACTTTGGTAGC 59.252 50.000 0.00 0.00 44.08 3.58
801 803 1.418637 TCGAGGCTTTGGTACTTTGGT 59.581 47.619 0.00 0.00 0.00 3.67
804 806 1.610886 GGCTCGAGGCTTTGGTACTTT 60.611 52.381 30.02 0.00 41.46 2.66
805 807 0.036294 GGCTCGAGGCTTTGGTACTT 60.036 55.000 30.02 0.00 41.46 2.24
806 808 1.597461 GGCTCGAGGCTTTGGTACT 59.403 57.895 30.02 0.00 41.46 2.73
808 810 1.980232 TCGGCTCGAGGCTTTGGTA 60.980 57.895 32.85 11.29 41.46 3.25
809 811 3.311110 TCGGCTCGAGGCTTTGGT 61.311 61.111 32.85 0.00 41.46 3.67
832 6613 2.357396 TCGAAGTCGGTCCGTCGA 60.357 61.111 18.34 18.34 40.00 4.20
834 6615 0.728466 CAAGTCGAAGTCGGTCCGTC 60.728 60.000 11.88 5.68 40.29 4.79
847 6628 2.267642 TTGGATCGGGCCAAGTCG 59.732 61.111 4.39 0.00 42.75 4.18
855 6636 0.613260 TGGACTTGAGTTGGATCGGG 59.387 55.000 0.00 0.00 0.00 5.14
856 6637 2.076863 GTTGGACTTGAGTTGGATCGG 58.923 52.381 0.00 0.00 0.00 4.18
857 6638 2.076863 GGTTGGACTTGAGTTGGATCG 58.923 52.381 0.00 0.00 0.00 3.69
859 6640 1.697432 TCGGTTGGACTTGAGTTGGAT 59.303 47.619 0.00 0.00 0.00 3.41
860 6641 1.124780 TCGGTTGGACTTGAGTTGGA 58.875 50.000 0.00 0.00 0.00 3.53
862 6643 1.226746 GGTCGGTTGGACTTGAGTTG 58.773 55.000 0.00 0.00 45.35 3.16
863 6644 0.249741 CGGTCGGTTGGACTTGAGTT 60.250 55.000 0.00 0.00 45.35 3.01
864 6645 1.111116 TCGGTCGGTTGGACTTGAGT 61.111 55.000 0.00 0.00 45.35 3.41
865 6646 0.666577 GTCGGTCGGTTGGACTTGAG 60.667 60.000 0.00 0.00 45.35 3.02
866 6647 1.364901 GTCGGTCGGTTGGACTTGA 59.635 57.895 0.00 0.00 45.35 3.02
882 6670 2.614229 GGCAAGGTGAAGAGAAGAGGTC 60.614 54.545 0.00 0.00 0.00 3.85
883 6671 1.349357 GGCAAGGTGAAGAGAAGAGGT 59.651 52.381 0.00 0.00 0.00 3.85
956 6745 2.587322 TTTCGGCGGCAGATCGGAAT 62.587 55.000 10.53 0.00 0.00 3.01
1744 7554 3.322466 CGGGTTGGTGCTCTCCCT 61.322 66.667 10.57 0.00 37.92 4.20
2184 7994 1.697982 TGCATCTCCTCCTCATCCATG 59.302 52.381 0.00 0.00 0.00 3.66
2262 8072 1.065272 TCATTACCGGCCACCTTAACC 60.065 52.381 0.00 0.00 0.00 2.85
2544 8354 3.768757 TGGTTCCAAAAATATCTGGCCTG 59.231 43.478 3.32 2.92 32.33 4.85
2631 8441 4.879295 ATGACCATCCCAAATAACCTGA 57.121 40.909 0.00 0.00 0.00 3.86
2694 8504 0.764890 CACCCTGTTCTTCTCCACCA 59.235 55.000 0.00 0.00 0.00 4.17
2748 8558 4.015406 AACGACATGCCAGGCCGA 62.015 61.111 9.64 0.00 0.00 5.54
2881 8694 0.540365 AGAGGTTGGTGCATGTTGGG 60.540 55.000 0.00 0.00 0.00 4.12
3277 9090 7.035004 GGAACAAATAAATTAGCATGACAGCA 58.965 34.615 0.00 0.00 36.85 4.41
3409 9222 0.473755 TTTGCTCCTTCAGACTGCCA 59.526 50.000 0.00 0.00 0.00 4.92
3693 9518 6.707608 TGCAAATCATAGTGCTGGACTTATAG 59.292 38.462 7.25 0.00 41.48 1.31
3970 9806 4.272018 GCAGAAGCATCTACAATACCACAG 59.728 45.833 0.00 0.00 41.58 3.66
4012 9848 9.453572 TTTCATAATAAGCACTTGAAGAGACAT 57.546 29.630 0.00 0.00 0.00 3.06
4069 9905 7.665559 GCCATCACCCATAACTCTAATTCAATA 59.334 37.037 0.00 0.00 0.00 1.90
4073 9909 5.471456 CAGCCATCACCCATAACTCTAATTC 59.529 44.000 0.00 0.00 0.00 2.17
4217 10053 2.569059 CCAGCAACATACTCATCCCTG 58.431 52.381 0.00 0.00 0.00 4.45
4231 10067 3.138884 TCAACTTATGACTGCCAGCAA 57.861 42.857 0.00 0.00 31.50 3.91
4233 10069 3.065925 GGAATCAACTTATGACTGCCAGC 59.934 47.826 0.00 0.00 41.93 4.85
4234 10070 4.334759 CAGGAATCAACTTATGACTGCCAG 59.665 45.833 0.00 0.00 41.93 4.85
4235 10071 4.263462 ACAGGAATCAACTTATGACTGCCA 60.263 41.667 0.00 0.00 41.93 4.92
4236 10072 4.265073 ACAGGAATCAACTTATGACTGCC 58.735 43.478 0.00 0.00 41.93 4.85
4237 10073 5.525378 CCTACAGGAATCAACTTATGACTGC 59.475 44.000 0.00 0.00 38.03 4.40
4238 10074 6.644347 ACCTACAGGAATCAACTTATGACTG 58.356 40.000 1.29 0.00 38.75 3.51
4239 10075 6.875972 ACCTACAGGAATCAACTTATGACT 57.124 37.500 1.29 0.00 38.75 3.41
4240 10076 9.046296 CATAACCTACAGGAATCAACTTATGAC 57.954 37.037 1.29 0.00 38.75 3.06
4241 10077 7.715249 GCATAACCTACAGGAATCAACTTATGA 59.285 37.037 1.29 0.00 39.69 2.15
4242 10078 7.498900 TGCATAACCTACAGGAATCAACTTATG 59.501 37.037 1.29 5.44 38.94 1.90
4243 10079 7.573710 TGCATAACCTACAGGAATCAACTTAT 58.426 34.615 1.29 0.00 38.94 1.73
4244 10080 6.953101 TGCATAACCTACAGGAATCAACTTA 58.047 36.000 1.29 0.00 38.94 2.24
4245 10081 5.815581 TGCATAACCTACAGGAATCAACTT 58.184 37.500 1.29 0.00 38.94 2.66
4246 10082 5.435686 TGCATAACCTACAGGAATCAACT 57.564 39.130 1.29 0.00 38.94 3.16
4247 10083 6.699575 AATGCATAACCTACAGGAATCAAC 57.300 37.500 0.00 0.00 38.94 3.18
4248 10084 8.815565 TTAAATGCATAACCTACAGGAATCAA 57.184 30.769 0.00 0.00 38.94 2.57
4249 10085 8.995027 ATTAAATGCATAACCTACAGGAATCA 57.005 30.769 0.00 0.00 38.94 2.57
4252 10088 9.249053 TGAAATTAAATGCATAACCTACAGGAA 57.751 29.630 0.00 0.00 38.94 3.36
4253 10089 8.815565 TGAAATTAAATGCATAACCTACAGGA 57.184 30.769 0.00 0.00 38.94 3.86
4254 10090 9.467258 CATGAAATTAAATGCATAACCTACAGG 57.533 33.333 0.00 0.00 42.17 4.00
4275 10111 9.421806 GGATGAAAACATCACAATAAACATGAA 57.578 29.630 0.00 0.00 41.93 2.57
4276 10112 8.805175 AGGATGAAAACATCACAATAAACATGA 58.195 29.630 0.00 0.00 41.93 3.07
4277 10113 8.991243 AGGATGAAAACATCACAATAAACATG 57.009 30.769 11.40 0.00 41.93 3.21
4280 10116 9.076596 GCTTAGGATGAAAACATCACAATAAAC 57.923 33.333 11.40 0.00 41.93 2.01
4281 10117 8.801299 TGCTTAGGATGAAAACATCACAATAAA 58.199 29.630 11.40 0.00 41.93 1.40
4282 10118 8.347004 TGCTTAGGATGAAAACATCACAATAA 57.653 30.769 11.40 5.11 41.93 1.40
4283 10119 7.936496 TGCTTAGGATGAAAACATCACAATA 57.064 32.000 11.40 0.00 41.93 1.90
4284 10120 6.839124 TGCTTAGGATGAAAACATCACAAT 57.161 33.333 11.40 0.00 41.93 2.71
4285 10121 6.265196 AGTTGCTTAGGATGAAAACATCACAA 59.735 34.615 11.40 4.73 41.93 3.33
4286 10122 5.769662 AGTTGCTTAGGATGAAAACATCACA 59.230 36.000 11.40 0.00 41.93 3.58
4287 10123 6.259550 AGTTGCTTAGGATGAAAACATCAC 57.740 37.500 11.40 2.75 41.93 3.06
4288 10124 7.994425 TTAGTTGCTTAGGATGAAAACATCA 57.006 32.000 11.40 0.00 43.67 3.07
4289 10125 9.691362 TTTTTAGTTGCTTAGGATGAAAACATC 57.309 29.630 0.00 0.00 0.00 3.06
4312 10148 9.431887 ACTATGCGGTATAATATCACGATTTTT 57.568 29.630 0.00 0.00 0.00 1.94
4313 10149 8.869897 CACTATGCGGTATAATATCACGATTTT 58.130 33.333 0.00 0.00 0.00 1.82
4314 10150 8.033038 ACACTATGCGGTATAATATCACGATTT 58.967 33.333 0.00 0.00 0.00 2.17
4315 10151 7.544622 ACACTATGCGGTATAATATCACGATT 58.455 34.615 0.00 0.00 0.00 3.34
4316 10152 7.096884 ACACTATGCGGTATAATATCACGAT 57.903 36.000 0.00 0.00 0.00 3.73
4317 10153 6.505044 ACACTATGCGGTATAATATCACGA 57.495 37.500 0.00 0.00 0.00 4.35
4318 10154 7.411480 CCAAACACTATGCGGTATAATATCACG 60.411 40.741 0.00 0.00 0.00 4.35
4319 10155 7.386848 ACCAAACACTATGCGGTATAATATCAC 59.613 37.037 0.00 0.00 0.00 3.06
4320 10156 7.446769 ACCAAACACTATGCGGTATAATATCA 58.553 34.615 0.00 0.00 0.00 2.15
4321 10157 7.601130 TGACCAAACACTATGCGGTATAATATC 59.399 37.037 0.00 0.00 0.00 1.63
4322 10158 7.446769 TGACCAAACACTATGCGGTATAATAT 58.553 34.615 0.00 0.00 0.00 1.28
4323 10159 6.818233 TGACCAAACACTATGCGGTATAATA 58.182 36.000 0.00 0.00 0.00 0.98
4324 10160 5.676552 TGACCAAACACTATGCGGTATAAT 58.323 37.500 0.00 0.00 0.00 1.28
4325 10161 5.087391 TGACCAAACACTATGCGGTATAA 57.913 39.130 0.00 0.00 0.00 0.98
4326 10162 4.739587 TGACCAAACACTATGCGGTATA 57.260 40.909 0.00 0.00 0.00 1.47
4327 10163 3.620427 TGACCAAACACTATGCGGTAT 57.380 42.857 0.00 0.00 0.00 2.73
4328 10164 3.068560 GTTGACCAAACACTATGCGGTA 58.931 45.455 0.00 0.00 38.75 4.02
4329 10165 1.877443 GTTGACCAAACACTATGCGGT 59.123 47.619 0.00 0.00 38.75 5.68
4330 10166 1.876799 TGTTGACCAAACACTATGCGG 59.123 47.619 0.00 0.00 43.96 5.69
4339 10175 8.941977 TCAACTATATGTGTATGTTGACCAAAC 58.058 33.333 0.00 0.00 41.02 2.93
4340 10176 9.679661 ATCAACTATATGTGTATGTTGACCAAA 57.320 29.630 8.67 0.00 46.02 3.28
4341 10177 9.679661 AATCAACTATATGTGTATGTTGACCAA 57.320 29.630 8.67 0.00 46.02 3.67
4342 10178 9.108284 CAATCAACTATATGTGTATGTTGACCA 57.892 33.333 8.67 0.00 46.02 4.02
4343 10179 9.325198 TCAATCAACTATATGTGTATGTTGACC 57.675 33.333 8.67 0.00 46.02 4.02
4373 10209 9.088987 ACTGGAACAAGTTGGTTAATTTATCAT 57.911 29.630 7.96 0.00 38.70 2.45
4374 10210 8.356657 CACTGGAACAAGTTGGTTAATTTATCA 58.643 33.333 7.96 0.00 38.70 2.15
4375 10211 8.357402 ACACTGGAACAAGTTGGTTAATTTATC 58.643 33.333 7.96 0.00 38.70 1.75
4376 10212 8.245195 ACACTGGAACAAGTTGGTTAATTTAT 57.755 30.769 7.96 0.00 38.70 1.40
4377 10213 7.201839 GGACACTGGAACAAGTTGGTTAATTTA 60.202 37.037 7.96 0.00 38.70 1.40
4378 10214 6.406512 GGACACTGGAACAAGTTGGTTAATTT 60.407 38.462 7.96 0.00 38.70 1.82
4379 10215 5.068591 GGACACTGGAACAAGTTGGTTAATT 59.931 40.000 7.96 0.00 38.70 1.40
4380 10216 4.583073 GGACACTGGAACAAGTTGGTTAAT 59.417 41.667 7.96 0.00 38.70 1.40
4381 10217 3.949113 GGACACTGGAACAAGTTGGTTAA 59.051 43.478 7.96 0.00 38.70 2.01
4382 10218 3.054287 TGGACACTGGAACAAGTTGGTTA 60.054 43.478 7.96 0.00 38.70 2.85
4383 10219 2.291282 TGGACACTGGAACAAGTTGGTT 60.291 45.455 7.96 0.00 38.70 3.67
4384 10220 1.283613 TGGACACTGGAACAAGTTGGT 59.716 47.619 7.96 0.00 38.70 3.67
4385 10221 2.051334 TGGACACTGGAACAAGTTGG 57.949 50.000 7.96 0.00 38.70 3.77
4386 10222 4.389374 ACTATGGACACTGGAACAAGTTG 58.611 43.478 0.00 0.00 38.70 3.16
4387 10223 4.706842 ACTATGGACACTGGAACAAGTT 57.293 40.909 0.00 0.00 38.70 2.66
4388 10224 5.818678 TTACTATGGACACTGGAACAAGT 57.181 39.130 0.00 0.00 38.70 3.16
4389 10225 6.878923 TCATTTACTATGGACACTGGAACAAG 59.121 38.462 0.00 0.00 38.70 3.16
4390 10226 6.774673 TCATTTACTATGGACACTGGAACAA 58.225 36.000 0.00 0.00 38.70 2.83
4391 10227 6.367374 TCATTTACTATGGACACTGGAACA 57.633 37.500 0.00 0.00 0.00 3.18
4392 10228 7.201732 CCATTCATTTACTATGGACACTGGAAC 60.202 40.741 0.00 0.00 41.05 3.62
4393 10229 6.828273 CCATTCATTTACTATGGACACTGGAA 59.172 38.462 0.00 0.00 41.05 3.53
4394 10230 6.157820 TCCATTCATTTACTATGGACACTGGA 59.842 38.462 0.00 0.00 42.10 3.86
4395 10231 6.356556 TCCATTCATTTACTATGGACACTGG 58.643 40.000 0.00 0.00 42.10 4.00
4396 10232 7.050377 ACTCCATTCATTTACTATGGACACTG 58.950 38.462 0.00 0.00 42.10 3.66
4397 10233 7.200434 ACTCCATTCATTTACTATGGACACT 57.800 36.000 0.00 0.00 42.10 3.55
4398 10234 7.657761 CCTACTCCATTCATTTACTATGGACAC 59.342 40.741 0.00 0.00 42.10 3.67
4399 10235 7.689313 GCCTACTCCATTCATTTACTATGGACA 60.689 40.741 0.00 0.00 42.10 4.02
4400 10236 6.651225 GCCTACTCCATTCATTTACTATGGAC 59.349 42.308 0.00 0.00 42.10 4.02
4401 10237 6.328934 TGCCTACTCCATTCATTTACTATGGA 59.671 38.462 0.00 0.00 44.12 3.41
4402 10238 6.428159 GTGCCTACTCCATTCATTTACTATGG 59.572 42.308 0.00 0.00 40.14 2.74
4403 10239 6.992123 TGTGCCTACTCCATTCATTTACTATG 59.008 38.462 0.00 0.00 0.00 2.23
4404 10240 7.136822 TGTGCCTACTCCATTCATTTACTAT 57.863 36.000 0.00 0.00 0.00 2.12
4405 10241 6.553953 TGTGCCTACTCCATTCATTTACTA 57.446 37.500 0.00 0.00 0.00 1.82
4406 10242 5.435686 TGTGCCTACTCCATTCATTTACT 57.564 39.130 0.00 0.00 0.00 2.24
4407 10243 6.509418 TTTGTGCCTACTCCATTCATTTAC 57.491 37.500 0.00 0.00 0.00 2.01
4408 10244 6.889177 TGATTTGTGCCTACTCCATTCATTTA 59.111 34.615 0.00 0.00 0.00 1.40
4409 10245 5.716228 TGATTTGTGCCTACTCCATTCATTT 59.284 36.000 0.00 0.00 0.00 2.32
4410 10246 5.126061 GTGATTTGTGCCTACTCCATTCATT 59.874 40.000 0.00 0.00 0.00 2.57
4411 10247 4.641989 GTGATTTGTGCCTACTCCATTCAT 59.358 41.667 0.00 0.00 0.00 2.57
4412 10248 4.009675 GTGATTTGTGCCTACTCCATTCA 58.990 43.478 0.00 0.00 0.00 2.57
4413 10249 4.095483 CAGTGATTTGTGCCTACTCCATTC 59.905 45.833 0.00 0.00 0.00 2.67
4414 10250 4.012374 CAGTGATTTGTGCCTACTCCATT 58.988 43.478 0.00 0.00 0.00 3.16
4415 10251 3.614092 CAGTGATTTGTGCCTACTCCAT 58.386 45.455 0.00 0.00 0.00 3.41
4416 10252 2.875672 GCAGTGATTTGTGCCTACTCCA 60.876 50.000 0.00 0.00 33.29 3.86
4417 10253 1.740025 GCAGTGATTTGTGCCTACTCC 59.260 52.381 0.00 0.00 33.29 3.85
4418 10254 2.426522 TGCAGTGATTTGTGCCTACTC 58.573 47.619 0.00 0.00 39.04 2.59
4419 10255 2.566833 TGCAGTGATTTGTGCCTACT 57.433 45.000 0.00 0.00 39.04 2.57
4420 10256 2.749076 TGATGCAGTGATTTGTGCCTAC 59.251 45.455 0.00 0.00 39.04 3.18
4421 10257 3.070476 TGATGCAGTGATTTGTGCCTA 57.930 42.857 0.00 0.00 39.04 3.93
4422 10258 1.913778 TGATGCAGTGATTTGTGCCT 58.086 45.000 0.00 0.00 39.04 4.75
4423 10259 2.728690 TTGATGCAGTGATTTGTGCC 57.271 45.000 0.00 0.00 39.04 5.01
4424 10260 4.491676 AGATTTGATGCAGTGATTTGTGC 58.508 39.130 0.00 0.00 40.29 4.57
4425 10261 6.090358 GGAAAGATTTGATGCAGTGATTTGTG 59.910 38.462 0.00 0.00 0.00 3.33
4426 10262 6.014840 AGGAAAGATTTGATGCAGTGATTTGT 60.015 34.615 0.00 0.00 0.00 2.83
4427 10263 6.395629 AGGAAAGATTTGATGCAGTGATTTG 58.604 36.000 0.00 0.00 0.00 2.32
4428 10264 6.600882 AGGAAAGATTTGATGCAGTGATTT 57.399 33.333 0.00 0.00 0.00 2.17
4429 10265 6.888632 AGTAGGAAAGATTTGATGCAGTGATT 59.111 34.615 0.00 0.00 0.00 2.57
4430 10266 6.421485 AGTAGGAAAGATTTGATGCAGTGAT 58.579 36.000 0.00 0.00 0.00 3.06
4431 10267 5.809001 AGTAGGAAAGATTTGATGCAGTGA 58.191 37.500 0.00 0.00 0.00 3.41
4432 10268 6.506500 AAGTAGGAAAGATTTGATGCAGTG 57.493 37.500 0.00 0.00 0.00 3.66
4433 10269 9.905713 TTATAAGTAGGAAAGATTTGATGCAGT 57.094 29.630 0.00 0.00 0.00 4.40
4456 10292 9.561069 GACAACCACCAACTCAGATATATTTAT 57.439 33.333 0.00 0.00 0.00 1.40
4457 10293 7.990886 GGACAACCACCAACTCAGATATATTTA 59.009 37.037 0.00 0.00 35.97 1.40
4458 10294 6.828785 GGACAACCACCAACTCAGATATATTT 59.171 38.462 0.00 0.00 35.97 1.40
4459 10295 6.357367 GGACAACCACCAACTCAGATATATT 58.643 40.000 0.00 0.00 35.97 1.28
4460 10296 5.453339 CGGACAACCACCAACTCAGATATAT 60.453 44.000 0.00 0.00 35.59 0.86
4461 10297 4.142026 CGGACAACCACCAACTCAGATATA 60.142 45.833 0.00 0.00 35.59 0.86
4462 10298 3.369471 CGGACAACCACCAACTCAGATAT 60.369 47.826 0.00 0.00 35.59 1.63
4463 10299 2.028476 CGGACAACCACCAACTCAGATA 60.028 50.000 0.00 0.00 35.59 1.98
4464 10300 1.270839 CGGACAACCACCAACTCAGAT 60.271 52.381 0.00 0.00 35.59 2.90
4465 10301 0.105964 CGGACAACCACCAACTCAGA 59.894 55.000 0.00 0.00 35.59 3.27
4466 10302 0.179056 ACGGACAACCACCAACTCAG 60.179 55.000 0.00 0.00 35.59 3.35
4467 10303 0.253610 AACGGACAACCACCAACTCA 59.746 50.000 0.00 0.00 35.59 3.41
4468 10304 0.942252 GAACGGACAACCACCAACTC 59.058 55.000 0.00 0.00 35.59 3.01
4469 10305 0.253610 TGAACGGACAACCACCAACT 59.746 50.000 0.00 0.00 35.59 3.16
4470 10306 0.379316 GTGAACGGACAACCACCAAC 59.621 55.000 0.00 0.00 35.59 3.77
4471 10307 0.748729 GGTGAACGGACAACCACCAA 60.749 55.000 0.00 0.00 46.13 3.67
4472 10308 1.153127 GGTGAACGGACAACCACCA 60.153 57.895 0.00 0.00 46.13 4.17
4473 10309 0.393820 TAGGTGAACGGACAACCACC 59.606 55.000 0.00 0.00 46.97 4.61
4474 10310 2.467566 ATAGGTGAACGGACAACCAC 57.532 50.000 0.00 0.00 35.59 4.16
4475 10311 4.383335 GGATAATAGGTGAACGGACAACCA 60.383 45.833 0.00 0.00 35.59 3.67
4476 10312 4.124970 GGATAATAGGTGAACGGACAACC 58.875 47.826 0.00 0.00 0.00 3.77
4477 10313 4.761975 TGGATAATAGGTGAACGGACAAC 58.238 43.478 0.00 0.00 0.00 3.32
4478 10314 5.454187 GGATGGATAATAGGTGAACGGACAA 60.454 44.000 0.00 0.00 0.00 3.18
4479 10315 4.039973 GGATGGATAATAGGTGAACGGACA 59.960 45.833 0.00 0.00 0.00 4.02
4480 10316 4.283722 AGGATGGATAATAGGTGAACGGAC 59.716 45.833 0.00 0.00 0.00 4.79
4481 10317 4.489737 AGGATGGATAATAGGTGAACGGA 58.510 43.478 0.00 0.00 0.00 4.69
4482 10318 4.528596 AGAGGATGGATAATAGGTGAACGG 59.471 45.833 0.00 0.00 0.00 4.44
4483 10319 5.730296 AGAGGATGGATAATAGGTGAACG 57.270 43.478 0.00 0.00 0.00 3.95
4484 10320 7.309770 AGAAGAGGATGGATAATAGGTGAAC 57.690 40.000 0.00 0.00 0.00 3.18
4485 10321 9.447279 TTTAGAAGAGGATGGATAATAGGTGAA 57.553 33.333 0.00 0.00 0.00 3.18
4486 10322 9.447279 TTTTAGAAGAGGATGGATAATAGGTGA 57.553 33.333 0.00 0.00 0.00 4.02
4495 10331 8.844244 CGATTCAAATTTTAGAAGAGGATGGAT 58.156 33.333 0.00 0.00 0.00 3.41
4496 10332 7.283127 CCGATTCAAATTTTAGAAGAGGATGGA 59.717 37.037 8.11 0.00 0.00 3.41
4497 10333 7.283127 TCCGATTCAAATTTTAGAAGAGGATGG 59.717 37.037 10.69 2.68 32.21 3.51
4498 10334 8.125448 GTCCGATTCAAATTTTAGAAGAGGATG 58.875 37.037 14.73 0.00 36.41 3.51
4499 10335 7.829211 TGTCCGATTCAAATTTTAGAAGAGGAT 59.171 33.333 14.73 0.00 36.41 3.24
4500 10336 7.165485 TGTCCGATTCAAATTTTAGAAGAGGA 58.835 34.615 10.69 10.69 33.67 3.71
4501 10337 7.377766 TGTCCGATTCAAATTTTAGAAGAGG 57.622 36.000 0.00 0.00 0.00 3.69
4502 10338 8.289618 TGTTGTCCGATTCAAATTTTAGAAGAG 58.710 33.333 0.00 0.00 0.00 2.85
4503 10339 8.160521 TGTTGTCCGATTCAAATTTTAGAAGA 57.839 30.769 0.00 0.00 0.00 2.87
4504 10340 8.970691 ATGTTGTCCGATTCAAATTTTAGAAG 57.029 30.769 0.00 0.00 0.00 2.85
4505 10341 9.757227 AAATGTTGTCCGATTCAAATTTTAGAA 57.243 25.926 0.00 0.00 0.00 2.10
4506 10342 9.757227 AAAATGTTGTCCGATTCAAATTTTAGA 57.243 25.926 0.00 0.00 31.91 2.10
4508 10344 9.534565 TGAAAATGTTGTCCGATTCAAATTTTA 57.465 25.926 0.00 0.00 32.68 1.52
4509 10345 8.430801 TGAAAATGTTGTCCGATTCAAATTTT 57.569 26.923 0.00 0.00 33.70 1.82
4510 10346 8.497554 CATGAAAATGTTGTCCGATTCAAATTT 58.502 29.630 0.00 0.00 31.37 1.82
4511 10347 7.360269 GCATGAAAATGTTGTCCGATTCAAATT 60.360 33.333 0.00 0.00 31.37 1.82
4512 10348 6.091169 GCATGAAAATGTTGTCCGATTCAAAT 59.909 34.615 0.00 0.00 31.37 2.32
4513 10349 5.404968 GCATGAAAATGTTGTCCGATTCAAA 59.595 36.000 0.00 0.00 31.37 2.69
4514 10350 4.922692 GCATGAAAATGTTGTCCGATTCAA 59.077 37.500 0.00 0.00 31.37 2.69
4515 10351 4.484236 GCATGAAAATGTTGTCCGATTCA 58.516 39.130 0.00 0.00 0.00 2.57
4516 10352 3.859386 GGCATGAAAATGTTGTCCGATTC 59.141 43.478 0.00 0.00 0.00 2.52
4517 10353 3.257873 TGGCATGAAAATGTTGTCCGATT 59.742 39.130 0.00 0.00 0.00 3.34
4518 10354 2.824936 TGGCATGAAAATGTTGTCCGAT 59.175 40.909 0.00 0.00 0.00 4.18
4519 10355 2.234143 TGGCATGAAAATGTTGTCCGA 58.766 42.857 0.00 0.00 0.00 4.55
4520 10356 2.721274 TGGCATGAAAATGTTGTCCG 57.279 45.000 0.00 0.00 0.00 4.79
4521 10357 3.187022 GCTTTGGCATGAAAATGTTGTCC 59.813 43.478 0.00 0.00 38.54 4.02
4522 10358 4.060205 AGCTTTGGCATGAAAATGTTGTC 58.940 39.130 0.00 0.00 41.70 3.18
4523 10359 4.060205 GAGCTTTGGCATGAAAATGTTGT 58.940 39.130 0.00 0.00 41.70 3.32
4524 10360 4.059511 TGAGCTTTGGCATGAAAATGTTG 58.940 39.130 0.00 0.00 41.70 3.33
4525 10361 4.339872 TGAGCTTTGGCATGAAAATGTT 57.660 36.364 0.00 0.00 41.70 2.71
4526 10362 4.546829 ATGAGCTTTGGCATGAAAATGT 57.453 36.364 0.00 0.00 41.70 2.71
4527 10363 4.932799 TCAATGAGCTTTGGCATGAAAATG 59.067 37.500 0.00 0.00 41.70 2.32
4528 10364 5.155278 TCAATGAGCTTTGGCATGAAAAT 57.845 34.783 0.00 0.00 41.70 1.82
4529 10365 4.603989 TCAATGAGCTTTGGCATGAAAA 57.396 36.364 0.00 0.00 41.70 2.29
4530 10366 4.603989 TTCAATGAGCTTTGGCATGAAA 57.396 36.364 0.00 0.00 41.70 2.69
4531 10367 4.464951 AGATTCAATGAGCTTTGGCATGAA 59.535 37.500 0.00 0.00 41.70 2.57
4532 10368 4.021229 AGATTCAATGAGCTTTGGCATGA 58.979 39.130 0.00 0.00 41.70 3.07
4533 10369 4.386867 AGATTCAATGAGCTTTGGCATG 57.613 40.909 0.00 0.00 41.70 4.06
4534 10370 4.464951 TCAAGATTCAATGAGCTTTGGCAT 59.535 37.500 0.00 0.00 41.70 4.40
4535 10371 3.827876 TCAAGATTCAATGAGCTTTGGCA 59.172 39.130 0.00 0.00 41.70 4.92
4536 10372 4.157289 TCTCAAGATTCAATGAGCTTTGGC 59.843 41.667 12.27 0.00 42.21 4.52
4537 10373 5.676584 GCTCTCAAGATTCAATGAGCTTTGG 60.677 44.000 12.27 4.55 42.21 3.28
4538 10374 5.333513 GCTCTCAAGATTCAATGAGCTTTG 58.666 41.667 12.27 0.00 42.21 2.77
4539 10375 4.094590 CGCTCTCAAGATTCAATGAGCTTT 59.905 41.667 12.27 0.00 43.06 3.51
4540 10376 3.622163 CGCTCTCAAGATTCAATGAGCTT 59.378 43.478 12.27 0.00 43.06 3.74
4541 10377 3.118847 TCGCTCTCAAGATTCAATGAGCT 60.119 43.478 12.27 0.00 43.06 4.09
4542 10378 3.193263 TCGCTCTCAAGATTCAATGAGC 58.807 45.455 12.27 10.79 42.21 4.26
4543 10379 4.270566 CCTTCGCTCTCAAGATTCAATGAG 59.729 45.833 11.31 11.31 43.51 2.90
4544 10380 4.186926 CCTTCGCTCTCAAGATTCAATGA 58.813 43.478 0.00 0.00 0.00 2.57
4545 10381 3.242673 GCCTTCGCTCTCAAGATTCAATG 60.243 47.826 0.00 0.00 0.00 2.82
4546 10382 2.941720 GCCTTCGCTCTCAAGATTCAAT 59.058 45.455 0.00 0.00 0.00 2.57
4547 10383 2.289631 TGCCTTCGCTCTCAAGATTCAA 60.290 45.455 0.00 0.00 35.36 2.69
4548 10384 1.276138 TGCCTTCGCTCTCAAGATTCA 59.724 47.619 0.00 0.00 35.36 2.57
4549 10385 1.932511 CTGCCTTCGCTCTCAAGATTC 59.067 52.381 0.00 0.00 35.36 2.52
4550 10386 1.406614 CCTGCCTTCGCTCTCAAGATT 60.407 52.381 0.00 0.00 35.36 2.40
4551 10387 0.177604 CCTGCCTTCGCTCTCAAGAT 59.822 55.000 0.00 0.00 35.36 2.40
4552 10388 0.900182 TCCTGCCTTCGCTCTCAAGA 60.900 55.000 0.00 0.00 35.36 3.02
4553 10389 0.177604 ATCCTGCCTTCGCTCTCAAG 59.822 55.000 0.00 0.00 35.36 3.02
4554 10390 0.176680 GATCCTGCCTTCGCTCTCAA 59.823 55.000 0.00 0.00 35.36 3.02
4555 10391 0.685785 AGATCCTGCCTTCGCTCTCA 60.686 55.000 0.00 0.00 35.36 3.27
4556 10392 1.000717 GTAGATCCTGCCTTCGCTCTC 60.001 57.143 0.00 0.00 35.36 3.20
4557 10393 1.036707 GTAGATCCTGCCTTCGCTCT 58.963 55.000 0.00 0.00 35.36 4.09
4558 10394 0.747255 TGTAGATCCTGCCTTCGCTC 59.253 55.000 0.00 0.00 35.36 5.03
4559 10395 0.749649 CTGTAGATCCTGCCTTCGCT 59.250 55.000 0.00 0.00 35.36 4.93
4560 10396 0.747255 TCTGTAGATCCTGCCTTCGC 59.253 55.000 0.00 0.00 0.00 4.70
4561 10397 2.500509 GTCTGTAGATCCTGCCTTCG 57.499 55.000 0.00 0.00 0.00 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.