Multiple sequence alignment - TraesCS3B01G566300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G566300 chr3B 100.000 2730 0 0 1 2730 798402744 798405473 0.000000e+00 5042.0
1 TraesCS3B01G566300 chr3B 89.474 437 25 12 1389 1821 798397597 798398016 1.440000e-147 532.0
2 TraesCS3B01G566300 chr3B 83.645 428 36 17 900 1302 798397177 798397595 3.320000e-99 372.0
3 TraesCS3B01G566300 chr3B 91.275 149 11 1 2293 2439 798412643 798412791 4.610000e-48 202.0
4 TraesCS3B01G566300 chr3B 89.623 106 11 0 2442 2547 775660359 775660464 4.740000e-28 135.0
5 TraesCS3B01G566300 chr3B 94.444 54 3 0 2240 2293 798412570 798412623 1.740000e-12 84.2
6 TraesCS3B01G566300 chr3B 100.000 29 0 0 1981 2009 14735388 14735360 1.000000e-03 54.7
7 TraesCS3B01G566300 chr3B 96.970 33 0 1 1984 2016 253630736 253630767 1.000000e-03 54.7
8 TraesCS3B01G566300 chr3B 96.970 33 0 1 1984 2016 253663781 253663812 1.000000e-03 54.7
9 TraesCS3B01G566300 chr3D 91.284 1262 65 19 753 1993 594954951 594956188 0.000000e+00 1679.0
10 TraesCS3B01G566300 chr3D 92.571 350 25 1 1389 1738 594893351 594893699 4.060000e-138 501.0
11 TraesCS3B01G566300 chr3D 87.054 448 37 12 864 1302 594892914 594893349 1.140000e-133 486.0
12 TraesCS3B01G566300 chr3D 87.879 429 13 19 2008 2427 594956229 594956627 4.120000e-128 468.0
13 TraesCS3B01G566300 chr3D 83.691 233 26 5 412 638 18703232 18703006 2.750000e-50 209.0
14 TraesCS3B01G566300 chr3D 93.431 137 7 1 2545 2679 594956629 594956765 4.610000e-48 202.0
15 TraesCS3B01G566300 chr3D 88.312 154 10 3 489 640 22928690 22928837 7.770000e-41 178.0
16 TraesCS3B01G566300 chr3D 92.771 83 5 1 2470 2552 583595339 583595258 4.780000e-23 119.0
17 TraesCS3B01G566300 chr3D 74.403 293 42 20 49 320 62375361 62375641 8.050000e-16 95.3
18 TraesCS3B01G566300 chr3D 85.366 82 8 3 640 719 594946999 594947078 6.270000e-12 82.4
19 TraesCS3B01G566300 chr3D 89.286 56 5 1 2596 2651 594894325 594894379 4.880000e-08 69.4
20 TraesCS3B01G566300 chr3D 97.143 35 1 0 1911 1945 594956081 594956115 2.940000e-05 60.2
21 TraesCS3B01G566300 chr3D 94.286 35 1 1 1982 2016 81366172 81366139 5.000000e-03 52.8
22 TraesCS3B01G566300 chr3A 87.462 989 63 39 635 1583 725904204 725905171 0.000000e+00 1083.0
23 TraesCS3B01G566300 chr3A 86.107 727 67 16 1187 1895 725911406 725912116 0.000000e+00 752.0
24 TraesCS3B01G566300 chr3A 83.056 903 64 42 1572 2440 725905324 725906171 0.000000e+00 737.0
25 TraesCS3B01G566300 chr3A 91.241 411 25 5 1389 1799 725842717 725843116 1.430000e-152 549.0
26 TraesCS3B01G566300 chr3A 88.496 452 35 13 864 1302 725842268 725842715 5.180000e-147 531.0
27 TraesCS3B01G566300 chr3A 96.532 173 5 1 1563 1735 726714175 726714004 4.450000e-73 285.0
28 TraesCS3B01G566300 chr3A 85.294 272 36 2 49 320 725903363 725903630 7.450000e-71 278.0
29 TraesCS3B01G566300 chr3A 86.932 176 19 3 1398 1572 726716032 726715860 7.710000e-46 195.0
30 TraesCS3B01G566300 chr3A 92.208 77 3 3 998 1073 726716512 726716438 3.720000e-19 106.0
31 TraesCS3B01G566300 chr3A 92.063 63 5 0 2668 2730 737732879 737732941 3.740000e-14 89.8
32 TraesCS3B01G566300 chr3A 100.000 28 0 0 1982 2009 170354475 170354448 5.000000e-03 52.8
33 TraesCS3B01G566300 chr7D 86.266 233 20 5 414 640 211868397 211868171 2.720000e-60 243.0
34 TraesCS3B01G566300 chr7D 90.476 105 10 0 2442 2546 340172724 340172620 3.670000e-29 139.0
35 TraesCS3B01G566300 chr7D 85.882 85 12 0 1604 1688 146106565 146106649 1.040000e-14 91.6
36 TraesCS3B01G566300 chr7B 85.597 243 20 9 412 646 727386860 727387095 9.770000e-60 241.0
37 TraesCS3B01G566300 chr7B 84.914 232 23 5 414 639 652145367 652145142 9.840000e-55 224.0
38 TraesCS3B01G566300 chr7B 91.667 60 4 1 2672 2730 726570236 726570177 6.270000e-12 82.4
39 TraesCS3B01G566300 chr1B 85.837 233 21 6 414 640 94937390 94937616 1.260000e-58 237.0
40 TraesCS3B01G566300 chr1B 85.470 117 16 1 2442 2558 680981218 680981103 1.330000e-23 121.0
41 TraesCS3B01G566300 chr7A 85.185 243 21 7 414 647 254880769 254880533 4.540000e-58 235.0
42 TraesCS3B01G566300 chr7A 87.059 85 11 0 1604 1688 146951390 146951474 2.240000e-16 97.1
43 TraesCS3B01G566300 chr7A 98.039 51 1 0 2680 2730 663599042 663598992 3.740000e-14 89.8
44 TraesCS3B01G566300 chr5B 85.106 235 23 5 414 642 556290923 556291151 2.110000e-56 230.0
45 TraesCS3B01G566300 chr5B 100.000 28 0 0 1984 2011 218214344 218214371 5.000000e-03 52.8
46 TraesCS3B01G566300 chr2B 84.615 156 18 5 489 638 593295 593140 1.690000e-32 150.0
47 TraesCS3B01G566300 chr2B 96.154 52 2 0 2679 2730 726123965 726124016 4.840000e-13 86.1
48 TraesCS3B01G566300 chr6D 90.265 113 11 0 2442 2554 450190201 450190313 6.090000e-32 148.0
49 TraesCS3B01G566300 chr4A 90.000 110 10 1 2442 2551 637538783 637538675 1.020000e-29 141.0
50 TraesCS3B01G566300 chr4A 100.000 29 0 0 1983 2011 71125321 71125293 1.000000e-03 54.7
51 TraesCS3B01G566300 chr2D 90.000 110 10 1 2442 2550 517612 517503 1.020000e-29 141.0
52 TraesCS3B01G566300 chr2D 100.000 30 0 0 1982 2011 612816725 612816696 3.800000e-04 56.5
53 TraesCS3B01G566300 chr5D 89.815 108 11 0 2442 2549 127940914 127941021 3.670000e-29 139.0
54 TraesCS3B01G566300 chr5D 88.288 111 12 1 2442 2551 14029081 14028971 6.130000e-27 132.0
55 TraesCS3B01G566300 chr4D 76.667 300 41 18 21 299 15300646 15300937 3.670000e-29 139.0
56 TraesCS3B01G566300 chr2A 93.220 59 4 0 2672 2730 15834971 15834913 1.350000e-13 87.9
57 TraesCS3B01G566300 chr2A 96.154 52 2 0 2679 2730 560677418 560677367 4.840000e-13 86.1
58 TraesCS3B01G566300 chr6A 91.803 61 4 1 2671 2730 103976274 103976334 1.740000e-12 84.2
59 TraesCS3B01G566300 chr1A 94.444 54 3 0 2677 2730 571434203 571434150 1.740000e-12 84.2
60 TraesCS3B01G566300 chr1A 90.323 62 5 1 2670 2730 535708923 535708984 2.250000e-11 80.5
61 TraesCS3B01G566300 chr1D 100.000 29 0 0 1981 2009 286391 286419 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G566300 chr3B 798402744 798405473 2729 False 5042.000000 5042 100.000000 1 2730 1 chr3B.!!$F4 2729
1 TraesCS3B01G566300 chr3B 798397177 798398016 839 False 452.000000 532 86.559500 900 1821 2 chr3B.!!$F5 921
2 TraesCS3B01G566300 chr3D 594954951 594956765 1814 False 602.300000 1679 92.434250 753 2679 4 chr3D.!!$F5 1926
3 TraesCS3B01G566300 chr3D 594892914 594894379 1465 False 352.133333 501 89.637000 864 2651 3 chr3D.!!$F4 1787
4 TraesCS3B01G566300 chr3A 725911406 725912116 710 False 752.000000 752 86.107000 1187 1895 1 chr3A.!!$F1 708
5 TraesCS3B01G566300 chr3A 725903363 725906171 2808 False 699.333333 1083 85.270667 49 2440 3 chr3A.!!$F4 2391
6 TraesCS3B01G566300 chr3A 725842268 725843116 848 False 540.000000 549 89.868500 864 1799 2 chr3A.!!$F3 935

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
547 1033 0.038526 TCCGTCTTTCGAAGGTGCTC 60.039 55.0 7.2 0.0 42.86 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2481 3387 0.034198 TGCGATCAAACGGTGGAGAA 59.966 50.0 0.0 0.0 0.0 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.864108 ACAGTAGCATTGCACTTGAATATAA 57.136 32.000 11.91 0.00 0.00 0.98
25 26 8.279970 ACAGTAGCATTGCACTTGAATATAAA 57.720 30.769 11.91 0.00 0.00 1.40
26 27 8.400947 ACAGTAGCATTGCACTTGAATATAAAG 58.599 33.333 11.91 0.38 0.00 1.85
27 28 8.400947 CAGTAGCATTGCACTTGAATATAAAGT 58.599 33.333 11.91 0.00 38.40 2.66
28 29 8.960591 AGTAGCATTGCACTTGAATATAAAGTT 58.039 29.630 11.91 0.00 35.70 2.66
29 30 9.013490 GTAGCATTGCACTTGAATATAAAGTTG 57.987 33.333 11.91 0.68 35.70 3.16
30 31 7.605449 AGCATTGCACTTGAATATAAAGTTGT 58.395 30.769 11.91 0.00 35.70 3.32
31 32 8.739039 AGCATTGCACTTGAATATAAAGTTGTA 58.261 29.630 11.91 0.00 35.70 2.41
32 33 9.013490 GCATTGCACTTGAATATAAAGTTGTAG 57.987 33.333 3.15 0.00 35.70 2.74
33 34 9.507280 CATTGCACTTGAATATAAAGTTGTAGG 57.493 33.333 0.00 0.00 35.70 3.18
34 35 7.083875 TGCACTTGAATATAAAGTTGTAGGC 57.916 36.000 1.83 3.46 35.70 3.93
35 36 6.657117 TGCACTTGAATATAAAGTTGTAGGCA 59.343 34.615 8.13 8.13 35.70 4.75
36 37 7.175816 TGCACTTGAATATAAAGTTGTAGGCAA 59.824 33.333 9.13 0.00 35.70 4.52
37 38 8.190784 GCACTTGAATATAAAGTTGTAGGCAAT 58.809 33.333 1.83 0.00 35.70 3.56
38 39 9.507280 CACTTGAATATAAAGTTGTAGGCAATG 57.493 33.333 1.83 0.00 35.70 2.82
39 40 9.243105 ACTTGAATATAAAGTTGTAGGCAATGT 57.757 29.630 0.00 0.00 34.16 2.71
40 41 9.722056 CTTGAATATAAAGTTGTAGGCAATGTC 57.278 33.333 0.00 0.00 36.92 3.06
41 42 8.800370 TGAATATAAAGTTGTAGGCAATGTCA 57.200 30.769 0.00 0.00 36.92 3.58
42 43 8.673711 TGAATATAAAGTTGTAGGCAATGTCAC 58.326 33.333 0.00 0.00 36.92 3.67
43 44 8.574251 AATATAAAGTTGTAGGCAATGTCACA 57.426 30.769 0.00 0.00 36.92 3.58
44 45 6.892658 ATAAAGTTGTAGGCAATGTCACAA 57.107 33.333 0.00 0.00 36.92 3.33
46 47 2.916111 GTTGTAGGCAATGTCACAACG 58.084 47.619 14.02 0.00 40.75 4.10
47 48 2.535012 TGTAGGCAATGTCACAACGA 57.465 45.000 0.00 0.00 0.00 3.85
57 58 6.345723 GGCAATGTCACAACGAAACTTATTTG 60.346 38.462 0.00 0.00 0.00 2.32
98 99 3.056250 TGAGTTGGAGATCTCTCAGCAAC 60.056 47.826 23.99 23.99 44.60 4.17
106 107 2.604686 TCTCAGCAACCGGCCTCT 60.605 61.111 0.00 0.00 46.50 3.69
111 112 0.039165 CAGCAACCGGCCTCTTTTTC 60.039 55.000 0.00 0.00 46.50 2.29
113 114 0.673985 GCAACCGGCCTCTTTTTCTT 59.326 50.000 0.00 0.00 36.11 2.52
114 115 1.068588 GCAACCGGCCTCTTTTTCTTT 59.931 47.619 0.00 0.00 36.11 2.52
121 122 3.253188 CGGCCTCTTTTTCTTTGATGTGA 59.747 43.478 0.00 0.00 0.00 3.58
122 123 4.082571 CGGCCTCTTTTTCTTTGATGTGAT 60.083 41.667 0.00 0.00 0.00 3.06
124 125 6.558909 GGCCTCTTTTTCTTTGATGTGATAG 58.441 40.000 0.00 0.00 0.00 2.08
128 129 7.094463 CCTCTTTTTCTTTGATGTGATAGCACT 60.094 37.037 13.05 0.00 45.36 4.40
129 130 8.846943 TCTTTTTCTTTGATGTGATAGCACTA 57.153 30.769 13.05 0.00 45.36 2.74
133 134 6.968131 TCTTTGATGTGATAGCACTAACAC 57.032 37.500 13.05 10.24 45.36 3.32
152 153 2.930040 CACTGGTGCTACATACCTTTCG 59.070 50.000 0.00 0.00 39.01 3.46
157 158 4.647853 TGGTGCTACATACCTTTCGTCTAT 59.352 41.667 0.00 0.00 39.01 1.98
161 162 7.255381 GGTGCTACATACCTTTCGTCTATTCTA 60.255 40.741 0.00 0.00 35.30 2.10
192 193 3.102276 GCACGAACAAAACACATCGAAA 58.898 40.909 0.64 0.00 38.59 3.46
200 201 7.324856 CGAACAAAACACATCGAAATGGATTAA 59.675 33.333 0.00 0.00 37.48 1.40
203 204 7.381139 ACAAAACACATCGAAATGGATTAACAC 59.619 33.333 0.00 0.00 37.19 3.32
207 208 5.959527 CACATCGAAATGGATTAACACTTCG 59.040 40.000 3.75 3.75 37.19 3.79
209 210 5.773239 TCGAAATGGATTAACACTTCGTC 57.227 39.130 9.13 0.00 37.51 4.20
220 221 0.043053 CACTTCGTCGTGTTGCACAG 60.043 55.000 0.00 0.00 33.40 3.66
228 229 2.096713 GTCGTGTTGCACAGATCAAGTC 60.097 50.000 0.00 0.00 33.40 3.01
229 230 1.195448 CGTGTTGCACAGATCAAGTCC 59.805 52.381 0.00 0.00 33.40 3.85
237 238 3.870419 GCACAGATCAAGTCCATCTCTTC 59.130 47.826 0.00 0.00 0.00 2.87
242 243 7.821359 CACAGATCAAGTCCATCTCTTCTAAAA 59.179 37.037 0.00 0.00 0.00 1.52
253 254 6.744537 CCATCTCTTCTAAAAATCAACTTGCG 59.255 38.462 0.00 0.00 0.00 4.85
256 257 5.997385 TCTTCTAAAAATCAACTTGCGGAC 58.003 37.500 0.00 0.00 0.00 4.79
259 260 5.938322 TCTAAAAATCAACTTGCGGACATC 58.062 37.500 0.00 0.00 0.00 3.06
271 272 1.126846 GCGGACATCTTCACAAAGTCG 59.873 52.381 0.00 0.00 33.95 4.18
274 275 3.985279 CGGACATCTTCACAAAGTCGTTA 59.015 43.478 0.00 0.00 33.95 3.18
275 276 4.625742 CGGACATCTTCACAAAGTCGTTAT 59.374 41.667 0.00 0.00 33.95 1.89
284 285 6.045072 TCACAAAGTCGTTATCATTACCCT 57.955 37.500 0.00 0.00 0.00 4.34
291 292 6.469410 AGTCGTTATCATTACCCTTGTTTGA 58.531 36.000 0.00 0.00 0.00 2.69
297 298 5.782893 TCATTACCCTTGTTTGAGGTTTG 57.217 39.130 0.00 0.00 34.88 2.93
301 302 1.069049 CCCTTGTTTGAGGTTTGCTGG 59.931 52.381 0.00 0.00 34.88 4.85
308 309 2.284754 TGAGGTTTGCTGGCACAATA 57.715 45.000 0.00 0.00 38.70 1.90
309 310 2.591923 TGAGGTTTGCTGGCACAATAA 58.408 42.857 0.00 0.00 38.70 1.40
310 311 3.164268 TGAGGTTTGCTGGCACAATAAT 58.836 40.909 0.00 0.00 38.70 1.28
320 321 4.640201 GCTGGCACAATAATCTCAACCTAA 59.360 41.667 0.00 0.00 38.70 2.69
321 322 5.449177 GCTGGCACAATAATCTCAACCTAAC 60.449 44.000 0.00 0.00 38.70 2.34
322 323 4.947388 TGGCACAATAATCTCAACCTAACC 59.053 41.667 0.00 0.00 31.92 2.85
327 386 6.814644 CACAATAATCTCAACCTAACCGTACA 59.185 38.462 0.00 0.00 0.00 2.90
329 388 7.494625 ACAATAATCTCAACCTAACCGTACATG 59.505 37.037 0.00 0.00 0.00 3.21
331 390 3.167485 TCTCAACCTAACCGTACATGGT 58.833 45.455 0.00 0.00 46.67 3.55
354 413 9.607988 TGGTTAGGTCTTGTATTTGTACATATG 57.392 33.333 8.85 0.00 0.00 1.78
374 860 9.991906 ACATATGTACACACTGTAAATATACCC 57.008 33.333 6.56 0.00 40.17 3.69
386 872 5.766670 TGTAAATATACCCGAGACGTCATCT 59.233 40.000 19.50 0.00 41.91 2.90
408 894 4.717313 GGGTGTGCGGTTCCCCTC 62.717 72.222 0.00 0.00 35.52 4.30
411 897 1.527380 GTGTGCGGTTCCCCTCAAA 60.527 57.895 0.00 0.00 0.00 2.69
412 898 0.893727 GTGTGCGGTTCCCCTCAAAT 60.894 55.000 0.00 0.00 0.00 2.32
413 899 0.178975 TGTGCGGTTCCCCTCAAATT 60.179 50.000 0.00 0.00 0.00 1.82
414 900 0.966179 GTGCGGTTCCCCTCAAATTT 59.034 50.000 0.00 0.00 0.00 1.82
415 901 2.164338 GTGCGGTTCCCCTCAAATTTA 58.836 47.619 0.00 0.00 0.00 1.40
416 902 2.758423 GTGCGGTTCCCCTCAAATTTAT 59.242 45.455 0.00 0.00 0.00 1.40
417 903 3.194755 GTGCGGTTCCCCTCAAATTTATT 59.805 43.478 0.00 0.00 0.00 1.40
418 904 3.445805 TGCGGTTCCCCTCAAATTTATTC 59.554 43.478 0.00 0.00 0.00 1.75
419 905 3.181479 GCGGTTCCCCTCAAATTTATTCC 60.181 47.826 0.00 0.00 0.00 3.01
420 906 4.278310 CGGTTCCCCTCAAATTTATTCCT 58.722 43.478 0.00 0.00 0.00 3.36
421 907 4.097892 CGGTTCCCCTCAAATTTATTCCTG 59.902 45.833 0.00 0.00 0.00 3.86
422 908 4.405680 GGTTCCCCTCAAATTTATTCCTGG 59.594 45.833 0.00 0.00 0.00 4.45
423 909 5.269189 GTTCCCCTCAAATTTATTCCTGGA 58.731 41.667 0.00 0.00 0.00 3.86
424 910 5.749422 TCCCCTCAAATTTATTCCTGGAT 57.251 39.130 0.00 0.00 0.00 3.41
425 911 5.705400 TCCCCTCAAATTTATTCCTGGATC 58.295 41.667 0.00 0.00 0.00 3.36
426 912 5.436374 TCCCCTCAAATTTATTCCTGGATCT 59.564 40.000 0.00 0.00 0.00 2.75
427 913 6.623602 TCCCCTCAAATTTATTCCTGGATCTA 59.376 38.462 0.00 0.00 0.00 1.98
428 914 7.298070 TCCCCTCAAATTTATTCCTGGATCTAT 59.702 37.037 0.00 0.00 0.00 1.98
429 915 7.952368 CCCCTCAAATTTATTCCTGGATCTATT 59.048 37.037 0.00 0.00 0.00 1.73
430 916 9.372189 CCCTCAAATTTATTCCTGGATCTATTT 57.628 33.333 0.00 0.00 0.00 1.40
449 935 1.926561 TCAGGATTTCTGACGATGCG 58.073 50.000 0.00 0.00 46.71 4.73
450 936 0.302890 CAGGATTTCTGACGATGCGC 59.697 55.000 0.00 0.00 46.18 6.09
451 937 0.811616 AGGATTTCTGACGATGCGCC 60.812 55.000 4.18 0.00 0.00 6.53
452 938 0.811616 GGATTTCTGACGATGCGCCT 60.812 55.000 4.18 0.00 0.00 5.52
453 939 1.009829 GATTTCTGACGATGCGCCTT 58.990 50.000 4.18 0.00 0.00 4.35
454 940 1.004504 GATTTCTGACGATGCGCCTTC 60.005 52.381 4.18 0.25 0.00 3.46
455 941 0.320334 TTTCTGACGATGCGCCTTCA 60.320 50.000 4.18 0.65 0.00 3.02
456 942 0.737367 TTCTGACGATGCGCCTTCAG 60.737 55.000 4.18 11.42 37.43 3.02
457 943 1.446792 CTGACGATGCGCCTTCAGT 60.447 57.895 4.18 4.89 32.41 3.41
458 944 1.690283 CTGACGATGCGCCTTCAGTG 61.690 60.000 4.18 0.00 32.41 3.66
459 945 2.434884 ACGATGCGCCTTCAGTGG 60.435 61.111 4.18 0.00 0.00 4.00
460 946 2.125552 CGATGCGCCTTCAGTGGA 60.126 61.111 4.18 0.00 0.00 4.02
461 947 1.741401 CGATGCGCCTTCAGTGGAA 60.741 57.895 4.18 0.00 0.00 3.53
481 967 4.030452 ACGTTCCCGTCGACGACC 62.030 66.667 37.65 20.05 46.28 4.79
482 968 4.029186 CGTTCCCGTCGACGACCA 62.029 66.667 37.65 18.42 41.53 4.02
483 969 2.126580 GTTCCCGTCGACGACCAG 60.127 66.667 37.65 20.95 43.02 4.00
484 970 2.281692 TTCCCGTCGACGACCAGA 60.282 61.111 37.65 24.01 43.02 3.86
485 971 2.620112 TTCCCGTCGACGACCAGAC 61.620 63.158 37.65 0.00 43.02 3.51
489 975 2.799916 GTCGACGACCAGACGCAC 60.800 66.667 17.25 0.00 37.89 5.34
490 976 4.379143 TCGACGACCAGACGCACG 62.379 66.667 0.00 0.00 37.89 5.34
492 978 4.338539 GACGACCAGACGCACGGT 62.339 66.667 0.00 0.00 38.56 4.83
493 979 4.640855 ACGACCAGACGCACGGTG 62.641 66.667 3.15 3.15 34.99 4.94
497 983 4.988598 CCAGACGCACGGTGCCTT 62.989 66.667 26.00 14.15 41.12 4.35
498 984 3.414700 CAGACGCACGGTGCCTTC 61.415 66.667 26.00 21.24 41.12 3.46
501 987 3.902162 GACGCACGGTGCCTTCGTA 62.902 63.158 26.00 0.00 41.12 3.43
502 988 2.508439 CGCACGGTGCCTTCGTAT 60.508 61.111 26.00 0.00 41.12 3.06
503 989 2.514013 CGCACGGTGCCTTCGTATC 61.514 63.158 26.00 0.00 41.12 2.24
504 990 1.153628 GCACGGTGCCTTCGTATCT 60.154 57.895 22.19 0.00 38.94 1.98
505 991 1.146358 GCACGGTGCCTTCGTATCTC 61.146 60.000 22.19 0.00 38.94 2.75
506 992 0.172578 CACGGTGCCTTCGTATCTCA 59.827 55.000 0.00 0.00 38.94 3.27
507 993 0.892755 ACGGTGCCTTCGTATCTCAA 59.107 50.000 0.00 0.00 39.22 3.02
508 994 1.135083 ACGGTGCCTTCGTATCTCAAG 60.135 52.381 0.00 0.00 39.22 3.02
509 995 1.134367 CGGTGCCTTCGTATCTCAAGA 59.866 52.381 0.00 0.00 0.00 3.02
510 996 2.223829 CGGTGCCTTCGTATCTCAAGAT 60.224 50.000 0.00 0.00 38.51 2.40
511 997 3.126831 GGTGCCTTCGTATCTCAAGATG 58.873 50.000 2.72 0.00 36.05 2.90
512 998 3.181475 GGTGCCTTCGTATCTCAAGATGA 60.181 47.826 2.72 0.00 36.05 2.92
513 999 4.502259 GGTGCCTTCGTATCTCAAGATGAT 60.502 45.833 2.72 0.00 36.05 2.45
514 1000 5.279006 GGTGCCTTCGTATCTCAAGATGATA 60.279 44.000 2.72 0.00 36.05 2.15
515 1001 6.393990 GTGCCTTCGTATCTCAAGATGATAT 58.606 40.000 2.72 0.00 36.05 1.63
516 1002 6.309980 GTGCCTTCGTATCTCAAGATGATATG 59.690 42.308 2.72 0.00 36.05 1.78
517 1003 5.290643 GCCTTCGTATCTCAAGATGATATGC 59.709 44.000 2.72 0.00 34.89 3.14
518 1004 5.809562 CCTTCGTATCTCAAGATGATATGCC 59.190 44.000 2.72 0.00 34.89 4.40
519 1005 4.986622 TCGTATCTCAAGATGATATGCCG 58.013 43.478 2.72 0.00 34.89 5.69
520 1006 4.700213 TCGTATCTCAAGATGATATGCCGA 59.300 41.667 2.72 0.00 34.89 5.54
521 1007 5.183140 TCGTATCTCAAGATGATATGCCGAA 59.817 40.000 2.72 0.00 34.89 4.30
522 1008 5.863935 CGTATCTCAAGATGATATGCCGAAA 59.136 40.000 2.72 0.00 36.05 3.46
523 1009 6.533012 CGTATCTCAAGATGATATGCCGAAAT 59.467 38.462 2.72 0.00 36.05 2.17
524 1010 7.702348 CGTATCTCAAGATGATATGCCGAAATA 59.298 37.037 2.72 0.00 36.05 1.40
525 1011 9.539825 GTATCTCAAGATGATATGCCGAAATAT 57.460 33.333 2.72 0.00 36.05 1.28
527 1013 8.853077 TCTCAAGATGATATGCCGAAATATTT 57.147 30.769 0.00 0.00 0.00 1.40
528 1014 9.288576 TCTCAAGATGATATGCCGAAATATTTT 57.711 29.630 1.43 0.00 0.00 1.82
529 1015 9.552114 CTCAAGATGATATGCCGAAATATTTTC 57.448 33.333 1.43 0.00 0.00 2.29
530 1016 8.514594 TCAAGATGATATGCCGAAATATTTTCC 58.485 33.333 1.43 0.00 0.00 3.13
531 1017 7.076842 AGATGATATGCCGAAATATTTTCCG 57.923 36.000 1.43 2.37 0.00 4.30
532 1018 6.655003 AGATGATATGCCGAAATATTTTCCGT 59.345 34.615 1.43 0.00 0.00 4.69
533 1019 6.236017 TGATATGCCGAAATATTTTCCGTC 57.764 37.500 1.43 0.00 0.00 4.79
534 1020 5.995282 TGATATGCCGAAATATTTTCCGTCT 59.005 36.000 1.43 0.00 0.00 4.18
535 1021 6.485313 TGATATGCCGAAATATTTTCCGTCTT 59.515 34.615 1.43 0.00 0.00 3.01
536 1022 5.576447 ATGCCGAAATATTTTCCGTCTTT 57.424 34.783 1.43 0.00 0.00 2.52
537 1023 4.976987 TGCCGAAATATTTTCCGTCTTTC 58.023 39.130 1.43 0.00 0.00 2.62
538 1024 4.026407 GCCGAAATATTTTCCGTCTTTCG 58.974 43.478 1.43 8.34 44.57 3.46
539 1025 4.201744 GCCGAAATATTTTCCGTCTTTCGA 60.202 41.667 15.00 0.00 46.65 3.71
540 1026 5.671825 GCCGAAATATTTTCCGTCTTTCGAA 60.672 40.000 15.00 0.00 46.65 3.71
541 1027 5.957796 CCGAAATATTTTCCGTCTTTCGAAG 59.042 40.000 15.00 0.00 46.65 3.79
542 1028 5.957796 CGAAATATTTTCCGTCTTTCGAAGG 59.042 40.000 9.42 0.00 46.65 3.46
543 1029 6.401796 CGAAATATTTTCCGTCTTTCGAAGGT 60.402 38.462 7.20 0.00 46.65 3.50
544 1030 5.796350 ATATTTTCCGTCTTTCGAAGGTG 57.204 39.130 7.20 1.64 42.86 4.00
545 1031 1.223187 TTTCCGTCTTTCGAAGGTGC 58.777 50.000 7.20 1.42 42.86 5.01
546 1032 0.391597 TTCCGTCTTTCGAAGGTGCT 59.608 50.000 7.20 0.00 42.86 4.40
547 1033 0.038526 TCCGTCTTTCGAAGGTGCTC 60.039 55.000 7.20 0.00 42.86 4.26
548 1034 0.319555 CCGTCTTTCGAAGGTGCTCA 60.320 55.000 7.20 0.00 42.86 4.26
549 1035 1.673033 CCGTCTTTCGAAGGTGCTCAT 60.673 52.381 7.20 0.00 42.86 2.90
550 1036 2.416836 CCGTCTTTCGAAGGTGCTCATA 60.417 50.000 7.20 0.00 42.86 2.15
551 1037 2.854777 CGTCTTTCGAAGGTGCTCATAG 59.145 50.000 7.20 0.00 42.86 2.23
552 1038 3.427638 CGTCTTTCGAAGGTGCTCATAGA 60.428 47.826 7.20 0.00 42.86 1.98
553 1039 4.109050 GTCTTTCGAAGGTGCTCATAGAG 58.891 47.826 7.20 0.00 0.00 2.43
554 1040 3.131223 TCTTTCGAAGGTGCTCATAGAGG 59.869 47.826 7.20 0.00 0.00 3.69
555 1041 2.145397 TCGAAGGTGCTCATAGAGGT 57.855 50.000 0.00 0.00 0.00 3.85
556 1042 3.292492 TCGAAGGTGCTCATAGAGGTA 57.708 47.619 0.00 0.00 0.00 3.08
557 1043 3.215151 TCGAAGGTGCTCATAGAGGTAG 58.785 50.000 0.00 0.00 0.00 3.18
558 1044 2.294791 CGAAGGTGCTCATAGAGGTAGG 59.705 54.545 0.00 0.00 0.00 3.18
559 1045 2.390225 AGGTGCTCATAGAGGTAGGG 57.610 55.000 0.00 0.00 0.00 3.53
560 1046 1.576272 AGGTGCTCATAGAGGTAGGGT 59.424 52.381 0.00 0.00 0.00 4.34
561 1047 1.689273 GGTGCTCATAGAGGTAGGGTG 59.311 57.143 0.00 0.00 0.00 4.61
562 1048 2.389715 GTGCTCATAGAGGTAGGGTGT 58.610 52.381 0.00 0.00 0.00 4.16
563 1049 3.563223 GTGCTCATAGAGGTAGGGTGTA 58.437 50.000 0.00 0.00 0.00 2.90
564 1050 3.318557 GTGCTCATAGAGGTAGGGTGTAC 59.681 52.174 0.00 0.00 0.00 2.90
565 1051 2.553172 GCTCATAGAGGTAGGGTGTACG 59.447 54.545 0.00 0.00 0.00 3.67
566 1052 3.818180 CTCATAGAGGTAGGGTGTACGT 58.182 50.000 0.00 0.00 0.00 3.57
567 1053 3.548770 TCATAGAGGTAGGGTGTACGTG 58.451 50.000 0.00 0.00 0.00 4.49
568 1054 3.054139 TCATAGAGGTAGGGTGTACGTGT 60.054 47.826 0.00 0.00 0.00 4.49
569 1055 1.542492 AGAGGTAGGGTGTACGTGTG 58.458 55.000 0.00 0.00 0.00 3.82
570 1056 1.202976 AGAGGTAGGGTGTACGTGTGT 60.203 52.381 0.00 0.00 0.00 3.72
571 1057 0.963962 AGGTAGGGTGTACGTGTGTG 59.036 55.000 0.00 0.00 0.00 3.82
572 1058 0.675633 GGTAGGGTGTACGTGTGTGT 59.324 55.000 0.00 0.00 0.00 3.72
573 1059 1.603678 GGTAGGGTGTACGTGTGTGTG 60.604 57.143 0.00 0.00 0.00 3.82
574 1060 1.067516 GTAGGGTGTACGTGTGTGTGT 59.932 52.381 0.00 0.00 0.00 3.72
575 1061 0.538118 AGGGTGTACGTGTGTGTGTT 59.462 50.000 0.00 0.00 0.00 3.32
576 1062 0.932399 GGGTGTACGTGTGTGTGTTC 59.068 55.000 0.00 0.00 0.00 3.18
577 1063 1.642728 GGTGTACGTGTGTGTGTTCA 58.357 50.000 0.00 0.00 0.00 3.18
578 1064 2.206750 GGTGTACGTGTGTGTGTTCAT 58.793 47.619 0.00 0.00 0.00 2.57
579 1065 3.382855 GGTGTACGTGTGTGTGTTCATA 58.617 45.455 0.00 0.00 0.00 2.15
580 1066 3.803231 GGTGTACGTGTGTGTGTTCATAA 59.197 43.478 0.00 0.00 0.00 1.90
581 1067 4.084745 GGTGTACGTGTGTGTGTTCATAAG 60.085 45.833 0.00 0.00 0.00 1.73
582 1068 4.052608 TGTACGTGTGTGTGTTCATAAGG 58.947 43.478 0.00 0.00 0.00 2.69
583 1069 2.489971 ACGTGTGTGTGTTCATAAGGG 58.510 47.619 0.00 0.00 0.00 3.95
584 1070 2.158871 ACGTGTGTGTGTTCATAAGGGT 60.159 45.455 0.00 0.00 0.00 4.34
585 1071 2.223144 CGTGTGTGTGTTCATAAGGGTG 59.777 50.000 0.00 0.00 0.00 4.61
586 1072 3.472652 GTGTGTGTGTTCATAAGGGTGA 58.527 45.455 0.00 0.00 0.00 4.02
587 1073 3.498397 GTGTGTGTGTTCATAAGGGTGAG 59.502 47.826 0.00 0.00 0.00 3.51
588 1074 3.135712 TGTGTGTGTTCATAAGGGTGAGT 59.864 43.478 0.00 0.00 0.00 3.41
589 1075 3.498397 GTGTGTGTTCATAAGGGTGAGTG 59.502 47.826 0.00 0.00 0.00 3.51
590 1076 3.135712 TGTGTGTTCATAAGGGTGAGTGT 59.864 43.478 0.00 0.00 0.00 3.55
591 1077 4.345547 TGTGTGTTCATAAGGGTGAGTGTA 59.654 41.667 0.00 0.00 0.00 2.90
592 1078 4.929808 GTGTGTTCATAAGGGTGAGTGTAG 59.070 45.833 0.00 0.00 0.00 2.74
593 1079 4.020573 TGTGTTCATAAGGGTGAGTGTAGG 60.021 45.833 0.00 0.00 0.00 3.18
594 1080 3.055385 TGTTCATAAGGGTGAGTGTAGGC 60.055 47.826 0.00 0.00 0.00 3.93
595 1081 1.754803 TCATAAGGGTGAGTGTAGGCG 59.245 52.381 0.00 0.00 0.00 5.52
596 1082 0.464452 ATAAGGGTGAGTGTAGGCGC 59.536 55.000 0.00 0.00 0.00 6.53
597 1083 1.940883 TAAGGGTGAGTGTAGGCGCG 61.941 60.000 0.00 0.00 0.00 6.86
598 1084 4.065281 GGGTGAGTGTAGGCGCGT 62.065 66.667 8.43 8.08 0.00 6.01
599 1085 2.809601 GGTGAGTGTAGGCGCGTG 60.810 66.667 13.84 0.00 0.00 5.34
600 1086 2.049433 GTGAGTGTAGGCGCGTGT 60.049 61.111 13.84 0.00 0.00 4.49
601 1087 1.210931 GTGAGTGTAGGCGCGTGTA 59.789 57.895 13.84 0.00 0.00 2.90
602 1088 0.179145 GTGAGTGTAGGCGCGTGTAT 60.179 55.000 13.84 0.00 0.00 2.29
603 1089 1.064505 GTGAGTGTAGGCGCGTGTATA 59.935 52.381 13.84 0.00 0.00 1.47
604 1090 1.951602 TGAGTGTAGGCGCGTGTATAT 59.048 47.619 13.84 0.00 0.00 0.86
605 1091 2.287368 TGAGTGTAGGCGCGTGTATATG 60.287 50.000 13.84 0.00 0.00 1.78
606 1092 1.951602 AGTGTAGGCGCGTGTATATGA 59.048 47.619 13.84 0.00 0.00 2.15
607 1093 2.031069 AGTGTAGGCGCGTGTATATGAG 60.031 50.000 13.84 0.00 0.00 2.90
608 1094 1.335597 TGTAGGCGCGTGTATATGAGC 60.336 52.381 13.84 0.00 37.83 4.26
611 1097 4.228451 CGCGTGTATATGAGCGCT 57.772 55.556 11.27 11.27 46.56 5.92
612 1098 2.506544 CGCGTGTATATGAGCGCTT 58.493 52.632 13.26 0.00 46.56 4.68
613 1099 0.159554 CGCGTGTATATGAGCGCTTG 59.840 55.000 13.26 0.00 46.56 4.01
614 1100 1.209128 GCGTGTATATGAGCGCTTGT 58.791 50.000 13.26 5.98 45.48 3.16
615 1101 1.071239 GCGTGTATATGAGCGCTTGTG 60.071 52.381 13.26 0.00 45.48 3.33
616 1102 2.193447 CGTGTATATGAGCGCTTGTGT 58.807 47.619 13.26 4.27 0.00 3.72
617 1103 2.216488 CGTGTATATGAGCGCTTGTGTC 59.784 50.000 13.26 0.00 0.00 3.67
618 1104 3.448686 GTGTATATGAGCGCTTGTGTCT 58.551 45.455 13.26 0.00 0.00 3.41
619 1105 3.243877 GTGTATATGAGCGCTTGTGTCTG 59.756 47.826 13.26 0.00 0.00 3.51
620 1106 2.680312 ATATGAGCGCTTGTGTCTGT 57.320 45.000 13.26 0.00 0.00 3.41
621 1107 3.801114 ATATGAGCGCTTGTGTCTGTA 57.199 42.857 13.26 0.00 0.00 2.74
622 1108 1.714794 ATGAGCGCTTGTGTCTGTAC 58.285 50.000 13.26 0.00 0.00 2.90
623 1109 0.673985 TGAGCGCTTGTGTCTGTACT 59.326 50.000 13.26 0.00 0.00 2.73
624 1110 1.063806 GAGCGCTTGTGTCTGTACTG 58.936 55.000 13.26 0.00 0.00 2.74
625 1111 0.673985 AGCGCTTGTGTCTGTACTGA 59.326 50.000 2.64 0.00 0.00 3.41
626 1112 1.273606 AGCGCTTGTGTCTGTACTGAT 59.726 47.619 2.64 0.00 0.00 2.90
627 1113 1.391485 GCGCTTGTGTCTGTACTGATG 59.609 52.381 0.00 0.00 0.00 3.07
628 1114 2.677199 CGCTTGTGTCTGTACTGATGT 58.323 47.619 5.69 0.00 0.00 3.06
629 1115 3.059884 CGCTTGTGTCTGTACTGATGTT 58.940 45.455 5.69 0.00 0.00 2.71
630 1116 4.234574 CGCTTGTGTCTGTACTGATGTTA 58.765 43.478 5.69 0.00 0.00 2.41
631 1117 4.684242 CGCTTGTGTCTGTACTGATGTTAA 59.316 41.667 5.69 0.07 0.00 2.01
632 1118 5.176774 CGCTTGTGTCTGTACTGATGTTAAA 59.823 40.000 5.69 0.00 0.00 1.52
633 1119 6.292649 CGCTTGTGTCTGTACTGATGTTAAAA 60.293 38.462 5.69 0.00 0.00 1.52
634 1120 7.414436 GCTTGTGTCTGTACTGATGTTAAAAA 58.586 34.615 5.69 0.00 0.00 1.94
711 1197 1.376466 AGCGTTTGAGGTGGCTGAT 59.624 52.632 0.00 0.00 33.81 2.90
722 1231 2.125326 TGGCTGATACGAGGTCGGG 61.125 63.158 4.13 0.00 44.95 5.14
958 1480 1.876664 CTCGACTCGAGCACTTCCA 59.123 57.895 15.30 0.00 46.75 3.53
967 1489 1.670087 CGAGCACTTCCACAAGTCGAT 60.670 52.381 0.00 0.00 41.24 3.59
1332 1883 9.973450 AGTAGCATCAAACTATCAACTATGTAG 57.027 33.333 0.00 0.00 0.00 2.74
1335 1886 7.649705 AGCATCAAACTATCAACTATGTAGACG 59.350 37.037 0.00 0.00 0.00 4.18
1380 1957 7.908827 TGCGGTGTTAATTTGTCTCTTATAA 57.091 32.000 0.00 0.00 0.00 0.98
1451 2029 1.379977 ATCGAGGACGGGAGCTTGA 60.380 57.895 0.00 0.00 40.21 3.02
1522 2100 0.830648 TCAAAGGCGATCCGGAGATT 59.169 50.000 11.34 0.00 37.47 2.40
1708 2450 1.141881 CCCGGACATGGACTTCTCG 59.858 63.158 0.73 0.00 0.00 4.04
1738 2481 6.820656 TGAAGATGCCTTCTTAAGATTGTCTC 59.179 38.462 5.89 1.87 44.88 3.36
1739 2482 6.558488 AGATGCCTTCTTAAGATTGTCTCT 57.442 37.500 5.89 4.09 34.96 3.10
1740 2483 6.956497 AGATGCCTTCTTAAGATTGTCTCTT 58.044 36.000 5.89 0.00 46.16 2.85
1741 2484 8.083828 AGATGCCTTCTTAAGATTGTCTCTTA 57.916 34.615 5.89 0.00 42.56 2.10
1840 2591 9.760077 ATTAGTATAGTTTCTATTTGGGTGTCG 57.240 33.333 0.00 0.00 0.00 4.35
1891 2642 6.201615 GTCTACGTACCTTTTGTAGTTTGCTT 59.798 38.462 0.00 0.00 37.45 3.91
1892 2643 5.823209 ACGTACCTTTTGTAGTTTGCTTT 57.177 34.783 0.00 0.00 0.00 3.51
1893 2644 6.198650 ACGTACCTTTTGTAGTTTGCTTTT 57.801 33.333 0.00 0.00 0.00 2.27
1894 2645 6.623486 ACGTACCTTTTGTAGTTTGCTTTTT 58.377 32.000 0.00 0.00 0.00 1.94
1916 2667 1.876322 TTTTTGCGATGGGCCTTTTG 58.124 45.000 4.53 0.00 42.61 2.44
1917 2668 0.755686 TTTTGCGATGGGCCTTTTGT 59.244 45.000 4.53 0.00 42.61 2.83
1918 2669 1.621992 TTTGCGATGGGCCTTTTGTA 58.378 45.000 4.53 0.00 42.61 2.41
1919 2670 1.173043 TTGCGATGGGCCTTTTGTAG 58.827 50.000 4.53 0.00 42.61 2.74
1920 2671 0.037590 TGCGATGGGCCTTTTGTAGT 59.962 50.000 4.53 0.00 42.61 2.73
1921 2672 1.173913 GCGATGGGCCTTTTGTAGTT 58.826 50.000 4.53 0.00 34.80 2.24
1922 2673 1.544246 GCGATGGGCCTTTTGTAGTTT 59.456 47.619 4.53 0.00 34.80 2.66
1923 2674 2.671070 GCGATGGGCCTTTTGTAGTTTG 60.671 50.000 4.53 0.00 34.80 2.93
1924 2675 2.671070 CGATGGGCCTTTTGTAGTTTGC 60.671 50.000 4.53 0.00 0.00 3.68
1925 2676 2.080654 TGGGCCTTTTGTAGTTTGCT 57.919 45.000 4.53 0.00 0.00 3.91
1972 2753 3.795150 GCAACAGTTTTTCCGATGCTTCA 60.795 43.478 0.08 0.00 0.00 3.02
1998 2779 9.199645 AGAAATAAGTTAACTAGTACTCCCTCC 57.800 37.037 8.92 0.00 0.00 4.30
1999 2780 7.579761 AATAAGTTAACTAGTACTCCCTCCG 57.420 40.000 8.92 0.00 0.00 4.63
2000 2781 4.582973 AGTTAACTAGTACTCCCTCCGT 57.417 45.455 6.26 0.00 0.00 4.69
2001 2782 4.522114 AGTTAACTAGTACTCCCTCCGTC 58.478 47.826 6.26 0.00 0.00 4.79
2002 2783 2.433662 AACTAGTACTCCCTCCGTCC 57.566 55.000 0.00 0.00 0.00 4.79
2004 2785 0.549950 CTAGTACTCCCTCCGTCCCA 59.450 60.000 0.00 0.00 0.00 4.37
2072 2879 8.233190 GTCAGAATTTGATCAAGTTTACAGAGG 58.767 37.037 16.30 3.72 38.29 3.69
2117 2949 2.832931 GTGCTCACACAGTAGCCAG 58.167 57.895 0.00 0.00 46.61 4.85
2246 3078 3.898482 AGTTTGGGCTACACAGAAAGTT 58.102 40.909 0.00 0.00 0.00 2.66
2262 3094 7.272084 CACAGAAAGTTTTCAGTCAACAAGAAG 59.728 37.037 7.30 0.00 39.61 2.85
2303 3135 4.926860 GGCTGCACCAAATTATGTTTTC 57.073 40.909 0.50 0.00 38.86 2.29
2304 3136 4.314121 GGCTGCACCAAATTATGTTTTCA 58.686 39.130 0.50 0.00 38.86 2.69
2409 3314 6.674760 GCTCGTAAGCGGTCTTTGAATTAATT 60.675 38.462 0.00 0.00 39.10 1.40
2410 3315 6.539324 TCGTAAGCGGTCTTTGAATTAATTG 58.461 36.000 5.17 0.00 38.89 2.32
2411 3316 5.227184 CGTAAGCGGTCTTTGAATTAATTGC 59.773 40.000 5.17 0.13 33.85 3.56
2412 3317 5.391312 AAGCGGTCTTTGAATTAATTGCT 57.609 34.783 5.17 2.60 0.00 3.91
2486 3392 9.939802 TTTTAGTCTTGTAACTCCTATTTCTCC 57.060 33.333 0.00 0.00 0.00 3.71
2487 3393 8.660295 TTAGTCTTGTAACTCCTATTTCTCCA 57.340 34.615 0.00 0.00 0.00 3.86
2488 3394 6.937392 AGTCTTGTAACTCCTATTTCTCCAC 58.063 40.000 0.00 0.00 0.00 4.02
2489 3395 6.070710 AGTCTTGTAACTCCTATTTCTCCACC 60.071 42.308 0.00 0.00 0.00 4.61
2490 3396 4.730949 TGTAACTCCTATTTCTCCACCG 57.269 45.455 0.00 0.00 0.00 4.94
2491 3397 4.091549 TGTAACTCCTATTTCTCCACCGT 58.908 43.478 0.00 0.00 0.00 4.83
2492 3398 4.529377 TGTAACTCCTATTTCTCCACCGTT 59.471 41.667 0.00 0.00 0.00 4.44
2493 3399 4.635699 AACTCCTATTTCTCCACCGTTT 57.364 40.909 0.00 0.00 0.00 3.60
2494 3400 3.939066 ACTCCTATTTCTCCACCGTTTG 58.061 45.455 0.00 0.00 0.00 2.93
2495 3401 3.581332 ACTCCTATTTCTCCACCGTTTGA 59.419 43.478 0.00 0.00 0.00 2.69
2496 3402 4.225267 ACTCCTATTTCTCCACCGTTTGAT 59.775 41.667 0.00 0.00 0.00 2.57
2497 3403 4.766375 TCCTATTTCTCCACCGTTTGATC 58.234 43.478 0.00 0.00 0.00 2.92
2498 3404 3.555956 CCTATTTCTCCACCGTTTGATCG 59.444 47.826 0.00 0.00 0.00 3.69
2499 3405 1.153353 TTTCTCCACCGTTTGATCGC 58.847 50.000 0.00 0.00 0.00 4.58
2500 3406 0.034198 TTCTCCACCGTTTGATCGCA 59.966 50.000 0.00 0.00 0.00 5.10
2501 3407 0.389817 TCTCCACCGTTTGATCGCAG 60.390 55.000 0.00 0.00 0.00 5.18
2502 3408 1.970917 CTCCACCGTTTGATCGCAGC 61.971 60.000 0.00 0.00 0.00 5.25
2503 3409 2.096406 CACCGTTTGATCGCAGCG 59.904 61.111 9.06 9.06 0.00 5.18
2504 3410 2.048597 ACCGTTTGATCGCAGCGA 60.049 55.556 22.06 22.06 41.13 4.93
2505 3411 1.666553 ACCGTTTGATCGCAGCGAA 60.667 52.632 23.76 2.62 39.99 4.70
2506 3412 1.019278 ACCGTTTGATCGCAGCGAAT 61.019 50.000 23.76 10.57 39.99 3.34
2507 3413 0.587242 CCGTTTGATCGCAGCGAATG 60.587 55.000 23.76 10.54 39.99 2.67
2508 3414 0.369931 CGTTTGATCGCAGCGAATGA 59.630 50.000 23.76 7.45 39.99 2.57
2509 3415 1.201910 CGTTTGATCGCAGCGAATGAA 60.202 47.619 23.76 13.32 39.99 2.57
2510 3416 2.169179 GTTTGATCGCAGCGAATGAAC 58.831 47.619 23.76 20.45 39.99 3.18
2511 3417 0.369931 TTGATCGCAGCGAATGAACG 59.630 50.000 23.76 0.00 39.99 3.95
2512 3418 1.273887 GATCGCAGCGAATGAACGG 59.726 57.895 23.76 0.00 39.99 4.44
2513 3419 2.686518 GATCGCAGCGAATGAACGGC 62.687 60.000 23.76 0.34 39.99 5.68
2514 3420 4.520846 CGCAGCGAATGAACGGCC 62.521 66.667 9.98 0.00 0.00 6.13
2515 3421 4.179579 GCAGCGAATGAACGGCCC 62.180 66.667 0.00 0.00 0.00 5.80
2516 3422 3.508840 CAGCGAATGAACGGCCCC 61.509 66.667 0.00 0.00 0.00 5.80
2517 3423 3.717294 AGCGAATGAACGGCCCCT 61.717 61.111 0.00 0.00 0.00 4.79
2518 3424 2.188469 GCGAATGAACGGCCCCTA 59.812 61.111 0.00 0.00 0.00 3.53
2519 3425 1.450669 GCGAATGAACGGCCCCTAA 60.451 57.895 0.00 0.00 0.00 2.69
2520 3426 1.027792 GCGAATGAACGGCCCCTAAA 61.028 55.000 0.00 0.00 0.00 1.85
2521 3427 1.675552 CGAATGAACGGCCCCTAAAT 58.324 50.000 0.00 0.00 0.00 1.40
2522 3428 2.021457 CGAATGAACGGCCCCTAAATT 58.979 47.619 0.00 0.00 0.00 1.82
2523 3429 2.032924 CGAATGAACGGCCCCTAAATTC 59.967 50.000 0.00 0.00 0.00 2.17
2524 3430 1.675552 ATGAACGGCCCCTAAATTCG 58.324 50.000 0.00 0.00 0.00 3.34
2525 3431 1.027792 TGAACGGCCCCTAAATTCGC 61.028 55.000 0.00 0.00 0.00 4.70
2526 3432 1.721664 GAACGGCCCCTAAATTCGCC 61.722 60.000 0.00 0.00 38.07 5.54
2527 3433 2.124487 CGGCCCCTAAATTCGCCA 60.124 61.111 0.00 0.00 41.71 5.69
2528 3434 1.751162 CGGCCCCTAAATTCGCCAA 60.751 57.895 0.00 0.00 41.71 4.52
2529 3435 1.106944 CGGCCCCTAAATTCGCCAAT 61.107 55.000 0.00 0.00 41.71 3.16
2530 3436 0.673985 GGCCCCTAAATTCGCCAATC 59.326 55.000 0.00 0.00 41.25 2.67
2531 3437 1.398692 GCCCCTAAATTCGCCAATCA 58.601 50.000 0.00 0.00 0.00 2.57
2532 3438 1.067060 GCCCCTAAATTCGCCAATCAC 59.933 52.381 0.00 0.00 0.00 3.06
2533 3439 1.681264 CCCCTAAATTCGCCAATCACC 59.319 52.381 0.00 0.00 0.00 4.02
2534 3440 1.333619 CCCTAAATTCGCCAATCACCG 59.666 52.381 0.00 0.00 0.00 4.94
2535 3441 2.014128 CCTAAATTCGCCAATCACCGT 58.986 47.619 0.00 0.00 0.00 4.83
2536 3442 3.199677 CCTAAATTCGCCAATCACCGTA 58.800 45.455 0.00 0.00 0.00 4.02
2537 3443 3.623960 CCTAAATTCGCCAATCACCGTAA 59.376 43.478 0.00 0.00 0.00 3.18
2538 3444 3.481112 AAATTCGCCAATCACCGTAAC 57.519 42.857 0.00 0.00 0.00 2.50
2539 3445 2.102070 ATTCGCCAATCACCGTAACA 57.898 45.000 0.00 0.00 0.00 2.41
2540 3446 2.102070 TTCGCCAATCACCGTAACAT 57.898 45.000 0.00 0.00 0.00 2.71
2541 3447 2.102070 TCGCCAATCACCGTAACATT 57.898 45.000 0.00 0.00 0.00 2.71
2542 3448 2.428491 TCGCCAATCACCGTAACATTT 58.572 42.857 0.00 0.00 0.00 2.32
2543 3449 2.160615 TCGCCAATCACCGTAACATTTG 59.839 45.455 0.00 0.00 0.00 2.32
2586 3494 7.759489 TTTAGATTGCTTACCACATTTGTCT 57.241 32.000 0.00 0.00 0.00 3.41
2632 3540 1.278172 CTGCTTCGATCATACGGCGG 61.278 60.000 13.24 0.00 0.00 6.13
2679 3587 9.827411 GATAACTTGAGTGGATGTTTTAGTTTC 57.173 33.333 0.00 0.00 0.00 2.78
2680 3588 7.639113 AACTTGAGTGGATGTTTTAGTTTCA 57.361 32.000 0.00 0.00 0.00 2.69
2681 3589 7.264373 ACTTGAGTGGATGTTTTAGTTTCAG 57.736 36.000 0.00 0.00 0.00 3.02
2682 3590 7.054124 ACTTGAGTGGATGTTTTAGTTTCAGA 58.946 34.615 0.00 0.00 0.00 3.27
2683 3591 7.556275 ACTTGAGTGGATGTTTTAGTTTCAGAA 59.444 33.333 0.00 0.00 0.00 3.02
2684 3592 7.873719 TGAGTGGATGTTTTAGTTTCAGAAA 57.126 32.000 0.00 0.00 0.00 2.52
2685 3593 8.463930 TGAGTGGATGTTTTAGTTTCAGAAAT 57.536 30.769 0.00 0.00 0.00 2.17
2686 3594 8.352201 TGAGTGGATGTTTTAGTTTCAGAAATG 58.648 33.333 0.00 0.00 0.00 2.32
2687 3595 8.237811 AGTGGATGTTTTAGTTTCAGAAATGT 57.762 30.769 0.00 0.00 0.00 2.71
2688 3596 8.695456 AGTGGATGTTTTAGTTTCAGAAATGTT 58.305 29.630 0.00 0.00 0.00 2.71
2689 3597 9.959749 GTGGATGTTTTAGTTTCAGAAATGTTA 57.040 29.630 0.00 0.00 0.00 2.41
2693 3601 8.330302 TGTTTTAGTTTCAGAAATGTTAACGC 57.670 30.769 0.00 0.00 0.00 4.84
2694 3602 7.432838 TGTTTTAGTTTCAGAAATGTTAACGCC 59.567 33.333 0.00 0.00 0.00 5.68
2695 3603 6.870971 TTAGTTTCAGAAATGTTAACGCCT 57.129 33.333 0.00 0.00 0.00 5.52
2696 3604 7.966246 TTAGTTTCAGAAATGTTAACGCCTA 57.034 32.000 0.00 0.00 0.00 3.93
2697 3605 6.237313 AGTTTCAGAAATGTTAACGCCTAC 57.763 37.500 0.00 0.00 0.00 3.18
2698 3606 5.761234 AGTTTCAGAAATGTTAACGCCTACA 59.239 36.000 0.00 0.00 0.00 2.74
2699 3607 6.430000 AGTTTCAGAAATGTTAACGCCTACAT 59.570 34.615 0.00 0.00 36.58 2.29
2700 3608 5.794687 TCAGAAATGTTAACGCCTACATG 57.205 39.130 0.26 0.00 35.29 3.21
2701 3609 5.242434 TCAGAAATGTTAACGCCTACATGT 58.758 37.500 2.69 2.69 35.29 3.21
2702 3610 5.121611 TCAGAAATGTTAACGCCTACATGTG 59.878 40.000 9.11 0.00 35.29 3.21
2703 3611 5.001232 AGAAATGTTAACGCCTACATGTGT 58.999 37.500 9.11 0.00 35.29 3.72
2704 3612 4.678509 AATGTTAACGCCTACATGTGTG 57.321 40.909 9.11 1.49 35.29 3.82
2705 3613 2.418692 TGTTAACGCCTACATGTGTGG 58.581 47.619 9.11 11.75 0.00 4.17
2710 3618 4.713946 CCTACATGTGTGGGCGTT 57.286 55.556 9.11 0.00 39.82 4.84
2711 3619 2.170738 CCTACATGTGTGGGCGTTG 58.829 57.895 9.11 0.00 39.82 4.10
2712 3620 0.321210 CCTACATGTGTGGGCGTTGA 60.321 55.000 9.11 0.00 39.82 3.18
2713 3621 0.796312 CTACATGTGTGGGCGTTGAC 59.204 55.000 9.11 0.00 0.00 3.18
2714 3622 0.604243 TACATGTGTGGGCGTTGACC 60.604 55.000 9.11 0.00 0.00 4.02
2715 3623 1.896183 CATGTGTGGGCGTTGACCA 60.896 57.895 0.00 0.00 39.14 4.02
2716 3624 1.074775 ATGTGTGGGCGTTGACCAT 59.925 52.632 0.00 0.00 45.49 3.55
2717 3625 0.960364 ATGTGTGGGCGTTGACCATC 60.960 55.000 0.00 0.00 45.49 3.51
2718 3626 1.302511 GTGTGGGCGTTGACCATCT 60.303 57.895 0.00 0.00 45.49 2.90
2719 3627 1.003839 TGTGGGCGTTGACCATCTC 60.004 57.895 0.00 0.00 45.49 2.75
2720 3628 2.100631 GTGGGCGTTGACCATCTCG 61.101 63.158 0.00 0.00 45.49 4.04
2721 3629 2.279810 TGGGCGTTGACCATCTCGA 61.280 57.895 0.00 0.00 34.69 4.04
2722 3630 1.810030 GGGCGTTGACCATCTCGAC 60.810 63.158 0.00 0.00 0.00 4.20
2723 3631 1.810030 GGCGTTGACCATCTCGACC 60.810 63.158 0.00 0.00 29.97 4.79
2724 3632 1.080093 GCGTTGACCATCTCGACCA 60.080 57.895 0.00 0.00 29.97 4.02
2725 3633 1.352156 GCGTTGACCATCTCGACCAC 61.352 60.000 0.00 0.00 29.97 4.16
2726 3634 0.038618 CGTTGACCATCTCGACCACA 60.039 55.000 0.00 0.00 29.97 4.17
2727 3635 1.429463 GTTGACCATCTCGACCACAC 58.571 55.000 0.00 0.00 0.00 3.82
2728 3636 0.038618 TTGACCATCTCGACCACACG 60.039 55.000 0.00 0.00 0.00 4.49
2729 3637 1.805945 GACCATCTCGACCACACGC 60.806 63.158 0.00 0.00 0.00 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.864108 TTATATTCAAGTGCAATGCTACTGT 57.136 32.000 6.82 0.00 0.00 3.55
1 2 8.400947 ACTTTATATTCAAGTGCAATGCTACTG 58.599 33.333 6.82 0.70 33.04 2.74
2 3 8.511604 ACTTTATATTCAAGTGCAATGCTACT 57.488 30.769 6.82 5.65 33.04 2.57
3 4 9.013490 CAACTTTATATTCAAGTGCAATGCTAC 57.987 33.333 6.82 3.21 34.59 3.58
4 5 8.739039 ACAACTTTATATTCAAGTGCAATGCTA 58.261 29.630 6.82 0.00 34.59 3.49
5 6 7.605449 ACAACTTTATATTCAAGTGCAATGCT 58.395 30.769 6.82 0.00 34.59 3.79
6 7 7.816945 ACAACTTTATATTCAAGTGCAATGC 57.183 32.000 0.00 0.00 34.59 3.56
7 8 9.507280 CCTACAACTTTATATTCAAGTGCAATG 57.493 33.333 0.00 0.00 34.59 2.82
8 9 8.190784 GCCTACAACTTTATATTCAAGTGCAAT 58.809 33.333 0.00 0.00 34.59 3.56
9 10 7.175816 TGCCTACAACTTTATATTCAAGTGCAA 59.824 33.333 0.00 0.00 34.59 4.08
10 11 6.657117 TGCCTACAACTTTATATTCAAGTGCA 59.343 34.615 1.72 4.06 34.59 4.57
11 12 7.083875 TGCCTACAACTTTATATTCAAGTGC 57.916 36.000 1.72 2.04 34.59 4.40
12 13 9.507280 CATTGCCTACAACTTTATATTCAAGTG 57.493 33.333 1.72 0.63 38.99 3.16
13 14 9.243105 ACATTGCCTACAACTTTATATTCAAGT 57.757 29.630 0.00 0.00 38.99 3.16
14 15 9.722056 GACATTGCCTACAACTTTATATTCAAG 57.278 33.333 0.00 0.00 38.99 3.02
15 16 9.237187 TGACATTGCCTACAACTTTATATTCAA 57.763 29.630 0.00 0.00 38.99 2.69
16 17 8.673711 GTGACATTGCCTACAACTTTATATTCA 58.326 33.333 0.00 0.00 38.99 2.57
17 18 8.673711 TGTGACATTGCCTACAACTTTATATTC 58.326 33.333 0.00 0.00 38.99 1.75
18 19 8.574251 TGTGACATTGCCTACAACTTTATATT 57.426 30.769 0.00 0.00 38.99 1.28
19 20 8.458843 GTTGTGACATTGCCTACAACTTTATAT 58.541 33.333 17.23 0.00 45.63 0.86
20 21 7.360522 CGTTGTGACATTGCCTACAACTTTATA 60.361 37.037 19.87 0.00 46.43 0.98
21 22 6.567701 CGTTGTGACATTGCCTACAACTTTAT 60.568 38.462 19.87 0.00 46.43 1.40
22 23 5.277586 CGTTGTGACATTGCCTACAACTTTA 60.278 40.000 19.87 0.00 46.43 1.85
23 24 4.497340 CGTTGTGACATTGCCTACAACTTT 60.497 41.667 19.87 0.00 46.43 2.66
24 25 3.003275 CGTTGTGACATTGCCTACAACTT 59.997 43.478 19.87 0.00 46.43 2.66
25 26 2.548057 CGTTGTGACATTGCCTACAACT 59.452 45.455 19.87 0.00 46.43 3.16
26 27 2.546368 TCGTTGTGACATTGCCTACAAC 59.454 45.455 15.67 15.67 45.64 3.32
27 28 2.839975 TCGTTGTGACATTGCCTACAA 58.160 42.857 0.00 0.00 40.87 2.41
28 29 2.535012 TCGTTGTGACATTGCCTACA 57.465 45.000 0.00 0.00 0.00 2.74
29 30 3.250040 AGTTTCGTTGTGACATTGCCTAC 59.750 43.478 0.00 0.00 0.00 3.18
30 31 3.472652 AGTTTCGTTGTGACATTGCCTA 58.527 40.909 0.00 0.00 0.00 3.93
31 32 2.297701 AGTTTCGTTGTGACATTGCCT 58.702 42.857 0.00 0.00 0.00 4.75
32 33 2.774439 AGTTTCGTTGTGACATTGCC 57.226 45.000 0.00 0.00 0.00 4.52
33 34 6.345723 CCAAATAAGTTTCGTTGTGACATTGC 60.346 38.462 0.00 0.00 0.00 3.56
34 35 6.143758 CCCAAATAAGTTTCGTTGTGACATTG 59.856 38.462 0.00 0.00 0.00 2.82
35 36 6.183360 ACCCAAATAAGTTTCGTTGTGACATT 60.183 34.615 0.00 0.00 0.00 2.71
36 37 5.300792 ACCCAAATAAGTTTCGTTGTGACAT 59.699 36.000 0.00 0.00 0.00 3.06
37 38 4.641094 ACCCAAATAAGTTTCGTTGTGACA 59.359 37.500 0.00 0.00 0.00 3.58
38 39 5.177725 ACCCAAATAAGTTTCGTTGTGAC 57.822 39.130 0.00 0.00 0.00 3.67
39 40 5.821470 TGTACCCAAATAAGTTTCGTTGTGA 59.179 36.000 0.00 0.00 0.00 3.58
40 41 6.062434 TGTACCCAAATAAGTTTCGTTGTG 57.938 37.500 0.00 0.00 0.00 3.33
41 42 6.696441 TTGTACCCAAATAAGTTTCGTTGT 57.304 33.333 0.00 0.00 0.00 3.32
42 43 7.590279 AGATTGTACCCAAATAAGTTTCGTTG 58.410 34.615 0.00 0.00 33.44 4.10
43 44 7.754851 AGATTGTACCCAAATAAGTTTCGTT 57.245 32.000 0.00 0.00 33.44 3.85
44 45 7.754851 AAGATTGTACCCAAATAAGTTTCGT 57.245 32.000 0.00 0.00 33.44 3.85
45 46 7.061789 GCAAAGATTGTACCCAAATAAGTTTCG 59.938 37.037 0.00 0.00 33.44 3.46
46 47 8.088365 AGCAAAGATTGTACCCAAATAAGTTTC 58.912 33.333 0.00 0.00 33.44 2.78
47 48 7.962441 AGCAAAGATTGTACCCAAATAAGTTT 58.038 30.769 0.00 0.00 33.44 2.66
57 58 3.071479 TCACGAAGCAAAGATTGTACCC 58.929 45.455 0.00 0.00 0.00 3.69
98 99 2.558359 ACATCAAAGAAAAAGAGGCCGG 59.442 45.455 0.00 0.00 0.00 6.13
106 107 8.845227 TGTTAGTGCTATCACATCAAAGAAAAA 58.155 29.630 0.00 0.00 45.49 1.94
111 112 6.183360 CCAGTGTTAGTGCTATCACATCAAAG 60.183 42.308 17.51 5.39 45.49 2.77
113 114 5.178061 CCAGTGTTAGTGCTATCACATCAA 58.822 41.667 17.51 0.00 45.49 2.57
114 115 4.222810 ACCAGTGTTAGTGCTATCACATCA 59.777 41.667 17.51 0.00 45.49 3.07
128 129 5.484715 GAAAGGTATGTAGCACCAGTGTTA 58.515 41.667 0.00 0.00 38.62 2.41
129 130 4.324267 GAAAGGTATGTAGCACCAGTGTT 58.676 43.478 0.00 0.00 38.62 3.32
133 134 3.119101 AGACGAAAGGTATGTAGCACCAG 60.119 47.826 0.00 0.00 38.62 4.00
152 153 6.197276 TCGTGCGTGAAATACTAGAATAGAC 58.803 40.000 0.00 0.00 42.77 2.59
157 158 4.548494 TGTTCGTGCGTGAAATACTAGAA 58.452 39.130 0.00 0.00 0.00 2.10
161 162 4.201832 TGTTTTGTTCGTGCGTGAAATACT 60.202 37.500 0.00 0.00 0.00 2.12
165 166 2.243407 GTGTTTTGTTCGTGCGTGAAA 58.757 42.857 0.00 0.00 0.00 2.69
170 171 1.034293 CGATGTGTTTTGTTCGTGCG 58.966 50.000 0.00 0.00 0.00 5.34
203 204 1.125021 GATCTGTGCAACACGACGAAG 59.875 52.381 0.00 0.00 45.67 3.79
207 208 1.867233 ACTTGATCTGTGCAACACGAC 59.133 47.619 0.00 0.00 45.67 4.34
209 210 1.195448 GGACTTGATCTGTGCAACACG 59.805 52.381 0.00 0.00 45.67 4.49
220 221 9.388506 TGATTTTTAGAAGAGATGGACTTGATC 57.611 33.333 0.00 0.00 0.00 2.92
228 229 6.744537 CGCAAGTTGATTTTTAGAAGAGATGG 59.255 38.462 7.16 0.00 0.00 3.51
229 230 6.744537 CCGCAAGTTGATTTTTAGAAGAGATG 59.255 38.462 7.16 0.00 0.00 2.90
237 238 5.942872 AGATGTCCGCAAGTTGATTTTTAG 58.057 37.500 7.16 0.00 0.00 1.85
242 243 3.189287 GTGAAGATGTCCGCAAGTTGATT 59.811 43.478 7.16 0.00 0.00 2.57
253 254 5.637810 TGATAACGACTTTGTGAAGATGTCC 59.362 40.000 0.00 0.00 36.69 4.02
256 257 8.116753 GGTAATGATAACGACTTTGTGAAGATG 58.883 37.037 0.00 0.00 36.69 2.90
259 260 6.594159 AGGGTAATGATAACGACTTTGTGAAG 59.406 38.462 0.00 0.00 38.87 3.02
271 272 7.462571 AACCTCAAACAAGGGTAATGATAAC 57.537 36.000 0.00 0.00 41.04 1.89
274 275 5.279456 GCAAACCTCAAACAAGGGTAATGAT 60.279 40.000 0.00 0.00 41.04 2.45
275 276 4.038642 GCAAACCTCAAACAAGGGTAATGA 59.961 41.667 0.00 0.00 41.04 2.57
284 285 1.134848 GTGCCAGCAAACCTCAAACAA 60.135 47.619 0.00 0.00 0.00 2.83
291 292 3.434309 AGATTATTGTGCCAGCAAACCT 58.566 40.909 0.00 0.00 31.63 3.50
297 298 3.019564 AGGTTGAGATTATTGTGCCAGC 58.980 45.455 0.00 0.00 0.00 4.85
301 302 4.634443 ACGGTTAGGTTGAGATTATTGTGC 59.366 41.667 0.00 0.00 0.00 4.57
308 309 4.224370 ACCATGTACGGTTAGGTTGAGATT 59.776 41.667 0.00 0.00 34.91 2.40
309 310 3.773119 ACCATGTACGGTTAGGTTGAGAT 59.227 43.478 0.00 0.00 34.91 2.75
310 311 3.167485 ACCATGTACGGTTAGGTTGAGA 58.833 45.455 0.00 0.00 34.91 3.27
320 321 2.901839 ACAAGACCTAACCATGTACGGT 59.098 45.455 0.00 0.00 42.71 4.83
321 322 3.604875 ACAAGACCTAACCATGTACGG 57.395 47.619 0.00 0.00 0.00 4.02
322 323 6.592607 ACAAATACAAGACCTAACCATGTACG 59.407 38.462 0.00 0.00 30.06 3.67
329 388 9.609346 ACATATGTACAAATACAAGACCTAACC 57.391 33.333 6.56 0.00 44.47 2.85
354 413 6.914757 GTCTCGGGTATATTTACAGTGTGTAC 59.085 42.308 5.88 1.66 31.69 2.90
358 417 4.641989 ACGTCTCGGGTATATTTACAGTGT 59.358 41.667 0.00 0.00 0.00 3.55
359 418 5.179045 ACGTCTCGGGTATATTTACAGTG 57.821 43.478 0.00 0.00 0.00 3.66
360 419 4.883585 TGACGTCTCGGGTATATTTACAGT 59.116 41.667 17.92 0.00 0.00 3.55
361 420 5.428496 TGACGTCTCGGGTATATTTACAG 57.572 43.478 17.92 0.00 0.00 2.74
362 421 5.766670 AGATGACGTCTCGGGTATATTTACA 59.233 40.000 17.92 0.00 28.45 2.41
363 422 6.251655 AGATGACGTCTCGGGTATATTTAC 57.748 41.667 17.92 0.00 28.45 2.01
365 424 5.786264 AAGATGACGTCTCGGGTATATTT 57.214 39.130 17.92 0.00 35.67 1.40
367 426 5.415077 CCTTAAGATGACGTCTCGGGTATAT 59.585 44.000 17.92 0.00 35.67 0.86
373 859 1.067212 CCCCTTAAGATGACGTCTCGG 59.933 57.143 17.92 8.06 35.67 4.63
374 860 1.749634 ACCCCTTAAGATGACGTCTCG 59.250 52.381 17.92 0.73 35.67 4.04
386 872 1.073548 GGAACCGCACACCCCTTAA 59.926 57.895 0.00 0.00 0.00 1.85
431 917 0.302890 GCGCATCGTCAGAAATCCTG 59.697 55.000 0.30 0.00 44.27 3.86
432 918 0.811616 GGCGCATCGTCAGAAATCCT 60.812 55.000 10.83 0.00 0.00 3.24
433 919 0.811616 AGGCGCATCGTCAGAAATCC 60.812 55.000 10.83 0.00 32.13 3.01
434 920 1.004504 GAAGGCGCATCGTCAGAAATC 60.005 52.381 10.83 0.00 32.13 2.17
435 921 1.009829 GAAGGCGCATCGTCAGAAAT 58.990 50.000 10.83 0.00 32.13 2.17
436 922 0.320334 TGAAGGCGCATCGTCAGAAA 60.320 50.000 10.83 0.00 32.13 2.52
437 923 0.737367 CTGAAGGCGCATCGTCAGAA 60.737 55.000 16.62 0.00 42.90 3.02
438 924 1.153765 CTGAAGGCGCATCGTCAGA 60.154 57.895 16.62 0.00 42.90 3.27
439 925 1.446792 ACTGAAGGCGCATCGTCAG 60.447 57.895 19.18 19.18 44.75 3.51
440 926 1.737735 CACTGAAGGCGCATCGTCA 60.738 57.895 10.83 2.37 32.13 4.35
441 927 2.456119 CCACTGAAGGCGCATCGTC 61.456 63.158 10.83 0.00 0.00 4.20
442 928 2.434884 CCACTGAAGGCGCATCGT 60.435 61.111 10.83 6.89 0.00 3.73
443 929 1.699656 CTTCCACTGAAGGCGCATCG 61.700 60.000 10.83 6.26 43.57 3.84
444 930 2.093216 CTTCCACTGAAGGCGCATC 58.907 57.895 10.83 7.72 43.57 3.91
445 931 4.308526 CTTCCACTGAAGGCGCAT 57.691 55.556 10.83 0.00 43.57 4.73
466 952 2.126580 CTGGTCGTCGACGGGAAC 60.127 66.667 35.05 25.61 40.29 3.62
467 953 2.281692 TCTGGTCGTCGACGGGAA 60.282 61.111 35.05 20.04 40.29 3.97
468 954 3.052082 GTCTGGTCGTCGACGGGA 61.052 66.667 35.05 23.80 40.29 5.14
469 955 4.456253 CGTCTGGTCGTCGACGGG 62.456 72.222 35.05 22.16 46.61 5.28
472 958 2.799916 GTGCGTCTGGTCGTCGAC 60.800 66.667 17.16 17.16 0.00 4.20
473 959 4.379143 CGTGCGTCTGGTCGTCGA 62.379 66.667 0.00 0.00 34.62 4.20
475 961 4.338539 ACCGTGCGTCTGGTCGTC 62.339 66.667 0.00 0.00 31.16 4.20
476 962 4.640855 CACCGTGCGTCTGGTCGT 62.641 66.667 0.00 0.00 35.96 4.34
480 966 4.988598 AAGGCACCGTGCGTCTGG 62.989 66.667 18.42 0.00 46.21 3.86
481 967 3.414700 GAAGGCACCGTGCGTCTG 61.415 66.667 18.42 0.00 46.21 3.51
483 969 3.902162 TACGAAGGCACCGTGCGTC 62.902 63.158 18.42 15.56 46.21 5.19
484 970 3.291101 ATACGAAGGCACCGTGCGT 62.291 57.895 17.13 15.02 46.21 5.24
485 971 2.508439 ATACGAAGGCACCGTGCG 60.508 61.111 17.13 6.03 46.21 5.34
486 972 1.146358 GAGATACGAAGGCACCGTGC 61.146 60.000 15.50 15.50 44.08 5.34
487 973 0.172578 TGAGATACGAAGGCACCGTG 59.827 55.000 13.15 0.00 40.76 4.94
488 974 0.892755 TTGAGATACGAAGGCACCGT 59.107 50.000 9.02 9.02 43.26 4.83
489 975 1.134367 TCTTGAGATACGAAGGCACCG 59.866 52.381 0.00 0.00 0.00 4.94
490 976 2.961526 TCTTGAGATACGAAGGCACC 57.038 50.000 0.00 0.00 0.00 5.01
491 977 4.046938 TCATCTTGAGATACGAAGGCAC 57.953 45.455 0.00 0.00 32.63 5.01
492 978 4.944619 ATCATCTTGAGATACGAAGGCA 57.055 40.909 0.00 0.00 32.63 4.75
493 979 5.290643 GCATATCATCTTGAGATACGAAGGC 59.709 44.000 0.00 0.00 32.63 4.35
494 980 5.809562 GGCATATCATCTTGAGATACGAAGG 59.190 44.000 0.00 0.00 32.63 3.46
495 981 5.514559 CGGCATATCATCTTGAGATACGAAG 59.485 44.000 0.00 0.00 32.89 3.79
496 982 5.183140 TCGGCATATCATCTTGAGATACGAA 59.817 40.000 0.00 0.00 35.39 3.85
497 983 4.700213 TCGGCATATCATCTTGAGATACGA 59.300 41.667 0.00 6.86 35.70 3.43
498 984 4.986622 TCGGCATATCATCTTGAGATACG 58.013 43.478 0.00 0.00 32.61 3.06
499 985 7.840342 ATTTCGGCATATCATCTTGAGATAC 57.160 36.000 0.00 0.00 32.63 2.24
501 987 9.458727 AAATATTTCGGCATATCATCTTGAGAT 57.541 29.630 0.00 0.00 34.56 2.75
502 988 8.853077 AAATATTTCGGCATATCATCTTGAGA 57.147 30.769 0.00 0.00 0.00 3.27
503 989 9.552114 GAAAATATTTCGGCATATCATCTTGAG 57.448 33.333 0.10 0.00 0.00 3.02
504 990 8.514594 GGAAAATATTTCGGCATATCATCTTGA 58.485 33.333 0.10 0.00 0.00 3.02
505 991 7.482743 CGGAAAATATTTCGGCATATCATCTTG 59.517 37.037 0.10 0.00 33.73 3.02
506 992 7.174946 ACGGAAAATATTTCGGCATATCATCTT 59.825 33.333 12.31 0.00 42.05 2.40
507 993 6.655003 ACGGAAAATATTTCGGCATATCATCT 59.345 34.615 12.31 0.00 42.05 2.90
508 994 6.842163 ACGGAAAATATTTCGGCATATCATC 58.158 36.000 12.31 0.00 42.05 2.92
509 995 6.817765 ACGGAAAATATTTCGGCATATCAT 57.182 33.333 12.31 0.00 42.05 2.45
510 996 6.236017 GACGGAAAATATTTCGGCATATCA 57.764 37.500 9.59 0.00 45.49 2.15
516 1002 4.026407 CGAAAGACGGAAAATATTTCGGC 58.974 43.478 12.31 9.81 46.62 5.54
530 1016 1.714794 ATGAGCACCTTCGAAAGACG 58.285 50.000 0.00 0.00 41.84 4.18
531 1017 4.109050 CTCTATGAGCACCTTCGAAAGAC 58.891 47.826 0.00 0.00 41.84 3.01
532 1018 3.131223 CCTCTATGAGCACCTTCGAAAGA 59.869 47.826 0.00 0.00 39.20 2.52
533 1019 3.118956 ACCTCTATGAGCACCTTCGAAAG 60.119 47.826 0.00 0.00 0.00 2.62
534 1020 2.832129 ACCTCTATGAGCACCTTCGAAA 59.168 45.455 0.00 0.00 0.00 3.46
535 1021 2.457598 ACCTCTATGAGCACCTTCGAA 58.542 47.619 0.00 0.00 0.00 3.71
536 1022 2.145397 ACCTCTATGAGCACCTTCGA 57.855 50.000 0.00 0.00 0.00 3.71
537 1023 2.294791 CCTACCTCTATGAGCACCTTCG 59.705 54.545 0.00 0.00 0.00 3.79
538 1024 2.630580 CCCTACCTCTATGAGCACCTTC 59.369 54.545 0.00 0.00 0.00 3.46
539 1025 2.022918 ACCCTACCTCTATGAGCACCTT 60.023 50.000 0.00 0.00 0.00 3.50
540 1026 1.576272 ACCCTACCTCTATGAGCACCT 59.424 52.381 0.00 0.00 0.00 4.00
541 1027 1.689273 CACCCTACCTCTATGAGCACC 59.311 57.143 0.00 0.00 0.00 5.01
542 1028 2.389715 ACACCCTACCTCTATGAGCAC 58.610 52.381 0.00 0.00 0.00 4.40
543 1029 2.848678 ACACCCTACCTCTATGAGCA 57.151 50.000 0.00 0.00 0.00 4.26
544 1030 2.553172 CGTACACCCTACCTCTATGAGC 59.447 54.545 0.00 0.00 0.00 4.26
545 1031 3.564644 CACGTACACCCTACCTCTATGAG 59.435 52.174 0.00 0.00 0.00 2.90
546 1032 3.054139 ACACGTACACCCTACCTCTATGA 60.054 47.826 0.00 0.00 0.00 2.15
547 1033 3.066342 CACACGTACACCCTACCTCTATG 59.934 52.174 0.00 0.00 0.00 2.23
548 1034 3.285484 CACACGTACACCCTACCTCTAT 58.715 50.000 0.00 0.00 0.00 1.98
549 1035 2.040278 ACACACGTACACCCTACCTCTA 59.960 50.000 0.00 0.00 0.00 2.43
550 1036 1.202976 ACACACGTACACCCTACCTCT 60.203 52.381 0.00 0.00 0.00 3.69
551 1037 1.068055 CACACACGTACACCCTACCTC 60.068 57.143 0.00 0.00 0.00 3.85
552 1038 0.963962 CACACACGTACACCCTACCT 59.036 55.000 0.00 0.00 0.00 3.08
553 1039 0.675633 ACACACACGTACACCCTACC 59.324 55.000 0.00 0.00 0.00 3.18
554 1040 1.067516 ACACACACACGTACACCCTAC 59.932 52.381 0.00 0.00 0.00 3.18
555 1041 1.401761 ACACACACACGTACACCCTA 58.598 50.000 0.00 0.00 0.00 3.53
556 1042 0.538118 AACACACACACGTACACCCT 59.462 50.000 0.00 0.00 0.00 4.34
557 1043 0.932399 GAACACACACACGTACACCC 59.068 55.000 0.00 0.00 0.00 4.61
558 1044 1.642728 TGAACACACACACGTACACC 58.357 50.000 0.00 0.00 0.00 4.16
559 1045 4.084745 CCTTATGAACACACACACGTACAC 60.085 45.833 0.00 0.00 0.00 2.90
560 1046 4.052608 CCTTATGAACACACACACGTACA 58.947 43.478 0.00 0.00 0.00 2.90
561 1047 3.430895 CCCTTATGAACACACACACGTAC 59.569 47.826 0.00 0.00 0.00 3.67
562 1048 3.069872 ACCCTTATGAACACACACACGTA 59.930 43.478 0.00 0.00 0.00 3.57
563 1049 2.158871 ACCCTTATGAACACACACACGT 60.159 45.455 0.00 0.00 0.00 4.49
564 1050 2.223144 CACCCTTATGAACACACACACG 59.777 50.000 0.00 0.00 0.00 4.49
565 1051 3.472652 TCACCCTTATGAACACACACAC 58.527 45.455 0.00 0.00 0.00 3.82
566 1052 3.135712 ACTCACCCTTATGAACACACACA 59.864 43.478 0.00 0.00 0.00 3.72
567 1053 3.498397 CACTCACCCTTATGAACACACAC 59.502 47.826 0.00 0.00 0.00 3.82
568 1054 3.135712 ACACTCACCCTTATGAACACACA 59.864 43.478 0.00 0.00 0.00 3.72
569 1055 3.740115 ACACTCACCCTTATGAACACAC 58.260 45.455 0.00 0.00 0.00 3.82
570 1056 4.020573 CCTACACTCACCCTTATGAACACA 60.021 45.833 0.00 0.00 0.00 3.72
571 1057 4.504858 CCTACACTCACCCTTATGAACAC 58.495 47.826 0.00 0.00 0.00 3.32
572 1058 3.055385 GCCTACACTCACCCTTATGAACA 60.055 47.826 0.00 0.00 0.00 3.18
573 1059 3.532542 GCCTACACTCACCCTTATGAAC 58.467 50.000 0.00 0.00 0.00 3.18
574 1060 2.167693 CGCCTACACTCACCCTTATGAA 59.832 50.000 0.00 0.00 0.00 2.57
575 1061 1.754803 CGCCTACACTCACCCTTATGA 59.245 52.381 0.00 0.00 0.00 2.15
576 1062 1.806623 GCGCCTACACTCACCCTTATG 60.807 57.143 0.00 0.00 0.00 1.90
577 1063 0.464452 GCGCCTACACTCACCCTTAT 59.536 55.000 0.00 0.00 0.00 1.73
578 1064 1.895238 GCGCCTACACTCACCCTTA 59.105 57.895 0.00 0.00 0.00 2.69
579 1065 2.663196 GCGCCTACACTCACCCTT 59.337 61.111 0.00 0.00 0.00 3.95
580 1066 3.760035 CGCGCCTACACTCACCCT 61.760 66.667 0.00 0.00 0.00 4.34
581 1067 4.065281 ACGCGCCTACACTCACCC 62.065 66.667 5.73 0.00 0.00 4.61
582 1068 2.203972 TACACGCGCCTACACTCACC 62.204 60.000 5.73 0.00 0.00 4.02
583 1069 0.179145 ATACACGCGCCTACACTCAC 60.179 55.000 5.73 0.00 0.00 3.51
584 1070 1.381522 TATACACGCGCCTACACTCA 58.618 50.000 5.73 0.00 0.00 3.41
585 1071 2.031420 TCATATACACGCGCCTACACTC 60.031 50.000 5.73 0.00 0.00 3.51
586 1072 1.951602 TCATATACACGCGCCTACACT 59.048 47.619 5.73 0.00 0.00 3.55
587 1073 2.316792 CTCATATACACGCGCCTACAC 58.683 52.381 5.73 0.00 0.00 2.90
588 1074 1.335597 GCTCATATACACGCGCCTACA 60.336 52.381 5.73 0.00 0.00 2.74
589 1075 1.337821 GCTCATATACACGCGCCTAC 58.662 55.000 5.73 0.00 0.00 3.18
590 1076 0.109919 CGCTCATATACACGCGCCTA 60.110 55.000 5.73 0.00 39.11 3.93
591 1077 1.371758 CGCTCATATACACGCGCCT 60.372 57.895 5.73 0.00 39.11 5.52
592 1078 3.147294 CGCTCATATACACGCGCC 58.853 61.111 5.73 0.00 39.11 6.53
596 1082 2.193447 ACACAAGCGCTCATATACACG 58.807 47.619 12.06 0.00 0.00 4.49
597 1083 3.243877 CAGACACAAGCGCTCATATACAC 59.756 47.826 12.06 0.00 0.00 2.90
598 1084 3.119137 ACAGACACAAGCGCTCATATACA 60.119 43.478 12.06 0.00 0.00 2.29
599 1085 3.448686 ACAGACACAAGCGCTCATATAC 58.551 45.455 12.06 1.00 0.00 1.47
600 1086 3.801114 ACAGACACAAGCGCTCATATA 57.199 42.857 12.06 0.00 0.00 0.86
601 1087 2.680312 ACAGACACAAGCGCTCATAT 57.320 45.000 12.06 0.00 0.00 1.78
602 1088 2.492088 AGTACAGACACAAGCGCTCATA 59.508 45.455 12.06 0.00 0.00 2.15
603 1089 1.273606 AGTACAGACACAAGCGCTCAT 59.726 47.619 12.06 0.00 0.00 2.90
604 1090 0.673985 AGTACAGACACAAGCGCTCA 59.326 50.000 12.06 0.00 0.00 4.26
605 1091 1.063806 CAGTACAGACACAAGCGCTC 58.936 55.000 12.06 0.00 0.00 5.03
606 1092 0.673985 TCAGTACAGACACAAGCGCT 59.326 50.000 2.64 2.64 0.00 5.92
607 1093 1.391485 CATCAGTACAGACACAAGCGC 59.609 52.381 0.00 0.00 0.00 5.92
608 1094 2.677199 ACATCAGTACAGACACAAGCG 58.323 47.619 0.00 0.00 0.00 4.68
609 1095 6.539649 TTTAACATCAGTACAGACACAAGC 57.460 37.500 0.00 0.00 0.00 4.01
633 1119 9.212641 GTAAGACGTAGGGTTTAGAGAATTTTT 57.787 33.333 0.00 0.00 0.00 1.94
634 1120 8.370182 TGTAAGACGTAGGGTTTAGAGAATTTT 58.630 33.333 0.00 0.00 0.00 1.82
635 1121 7.816513 GTGTAAGACGTAGGGTTTAGAGAATTT 59.183 37.037 0.00 0.00 0.00 1.82
636 1122 7.318893 GTGTAAGACGTAGGGTTTAGAGAATT 58.681 38.462 0.00 0.00 0.00 2.17
637 1123 6.404074 CGTGTAAGACGTAGGGTTTAGAGAAT 60.404 42.308 0.00 0.00 43.50 2.40
683 1169 1.891060 CTCAAACGCTGTCCACGAGC 61.891 60.000 0.00 0.00 0.00 5.03
684 1170 1.284982 CCTCAAACGCTGTCCACGAG 61.285 60.000 0.00 0.00 0.00 4.18
685 1171 1.300620 CCTCAAACGCTGTCCACGA 60.301 57.895 0.00 0.00 0.00 4.35
686 1172 1.594293 ACCTCAAACGCTGTCCACG 60.594 57.895 0.00 0.00 0.00 4.94
687 1173 1.507141 CCACCTCAAACGCTGTCCAC 61.507 60.000 0.00 0.00 0.00 4.02
688 1174 1.227823 CCACCTCAAACGCTGTCCA 60.228 57.895 0.00 0.00 0.00 4.02
689 1175 2.617274 GCCACCTCAAACGCTGTCC 61.617 63.158 0.00 0.00 0.00 4.02
690 1176 1.598130 AGCCACCTCAAACGCTGTC 60.598 57.895 0.00 0.00 0.00 3.51
691 1177 1.893808 CAGCCACCTCAAACGCTGT 60.894 57.895 0.00 0.00 42.97 4.40
692 1178 2.949106 CAGCCACCTCAAACGCTG 59.051 61.111 0.00 0.00 42.42 5.18
693 1179 0.613260 TATCAGCCACCTCAAACGCT 59.387 50.000 0.00 0.00 0.00 5.07
694 1180 0.727398 GTATCAGCCACCTCAAACGC 59.273 55.000 0.00 0.00 0.00 4.84
695 1181 0.999406 CGTATCAGCCACCTCAAACG 59.001 55.000 0.00 0.00 0.00 3.60
696 1182 2.271800 CTCGTATCAGCCACCTCAAAC 58.728 52.381 0.00 0.00 0.00 2.93
697 1183 1.207089 CCTCGTATCAGCCACCTCAAA 59.793 52.381 0.00 0.00 0.00 2.69
711 1197 1.033746 GTCATGGACCCGACCTCGTA 61.034 60.000 0.00 0.00 37.74 3.43
722 1231 1.202463 CCGTCTCTGATGGTCATGGAC 60.202 57.143 0.00 0.00 34.27 4.02
754 1263 3.864686 CCAATTCCGCGGCGTCTG 61.865 66.667 23.51 14.45 0.00 3.51
851 1362 7.042321 CGTTTATTTATATTGAAGACCTCCGCA 60.042 37.037 0.00 0.00 0.00 5.69
854 1365 8.897872 TCCGTTTATTTATATTGAAGACCTCC 57.102 34.615 0.00 0.00 0.00 4.30
946 1468 0.318699 CGACTTGTGGAAGTGCTCGA 60.319 55.000 0.00 0.00 42.80 4.04
952 1474 3.057734 GTTTCGATCGACTTGTGGAAGT 58.942 45.455 19.26 0.00 45.59 3.01
958 1480 3.087031 TCTAGGGTTTCGATCGACTTGT 58.913 45.455 19.26 4.39 0.00 3.16
967 1489 4.224594 TCTGTCTCTACTCTAGGGTTTCGA 59.775 45.833 0.00 0.00 0.00 3.71
1332 1883 3.305398 AGGACAAGATGAACTGTCGTC 57.695 47.619 0.00 0.00 39.72 4.20
1335 1886 5.446473 CGCATAAAGGACAAGATGAACTGTC 60.446 44.000 0.00 0.00 0.00 3.51
1380 1957 0.035056 GTGCAGCTCACCCTGGTAAT 60.035 55.000 0.00 0.00 39.79 1.89
1708 2450 2.744352 AAGAAGGCATCTTCATCCCC 57.256 50.000 0.00 0.00 45.42 4.81
1738 2481 2.102252 CTCCAGGCTCCAGCTAAGTAAG 59.898 54.545 0.00 0.00 41.70 2.34
1739 2482 2.111384 CTCCAGGCTCCAGCTAAGTAA 58.889 52.381 0.00 0.00 41.70 2.24
1740 2483 1.689575 CCTCCAGGCTCCAGCTAAGTA 60.690 57.143 0.00 0.00 41.70 2.24
1741 2484 0.980231 CCTCCAGGCTCCAGCTAAGT 60.980 60.000 0.00 0.00 41.70 2.24
1840 2591 9.685005 CGCATAAACAGACACTTAAAATACTAC 57.315 33.333 0.00 0.00 0.00 2.73
1897 2648 1.139853 ACAAAAGGCCCATCGCAAAAA 59.860 42.857 0.00 0.00 40.31 1.94
1898 2649 0.755686 ACAAAAGGCCCATCGCAAAA 59.244 45.000 0.00 0.00 40.31 2.44
1899 2650 1.543802 CTACAAAAGGCCCATCGCAAA 59.456 47.619 0.00 0.00 40.31 3.68
1900 2651 1.173043 CTACAAAAGGCCCATCGCAA 58.827 50.000 0.00 0.00 40.31 4.85
1901 2652 0.037590 ACTACAAAAGGCCCATCGCA 59.962 50.000 0.00 0.00 40.31 5.10
1902 2653 1.173913 AACTACAAAAGGCCCATCGC 58.826 50.000 0.00 0.00 0.00 4.58
1903 2654 2.671070 GCAAACTACAAAAGGCCCATCG 60.671 50.000 0.00 0.00 0.00 3.84
1904 2655 2.562738 AGCAAACTACAAAAGGCCCATC 59.437 45.455 0.00 0.00 0.00 3.51
1905 2656 2.608623 AGCAAACTACAAAAGGCCCAT 58.391 42.857 0.00 0.00 0.00 4.00
1906 2657 2.080654 AGCAAACTACAAAAGGCCCA 57.919 45.000 0.00 0.00 0.00 5.36
1907 2658 4.801330 AATAGCAAACTACAAAAGGCCC 57.199 40.909 0.00 0.00 0.00 5.80
1908 2659 4.929211 CCAAATAGCAAACTACAAAAGGCC 59.071 41.667 0.00 0.00 0.00 5.19
1909 2660 5.778862 TCCAAATAGCAAACTACAAAAGGC 58.221 37.500 0.00 0.00 0.00 4.35
1910 2661 7.542130 GTCATCCAAATAGCAAACTACAAAAGG 59.458 37.037 0.00 0.00 0.00 3.11
1911 2662 8.299570 AGTCATCCAAATAGCAAACTACAAAAG 58.700 33.333 0.00 0.00 0.00 2.27
1912 2663 8.177119 AGTCATCCAAATAGCAAACTACAAAA 57.823 30.769 0.00 0.00 0.00 2.44
1913 2664 7.759489 AGTCATCCAAATAGCAAACTACAAA 57.241 32.000 0.00 0.00 0.00 2.83
1914 2665 7.230510 ACAAGTCATCCAAATAGCAAACTACAA 59.769 33.333 0.00 0.00 0.00 2.41
1915 2666 6.714810 ACAAGTCATCCAAATAGCAAACTACA 59.285 34.615 0.00 0.00 0.00 2.74
1916 2667 7.023575 CACAAGTCATCCAAATAGCAAACTAC 58.976 38.462 0.00 0.00 0.00 2.73
1917 2668 6.150976 CCACAAGTCATCCAAATAGCAAACTA 59.849 38.462 0.00 0.00 0.00 2.24
1918 2669 5.047802 CCACAAGTCATCCAAATAGCAAACT 60.048 40.000 0.00 0.00 0.00 2.66
1919 2670 5.163513 CCACAAGTCATCCAAATAGCAAAC 58.836 41.667 0.00 0.00 0.00 2.93
1920 2671 4.832266 ACCACAAGTCATCCAAATAGCAAA 59.168 37.500 0.00 0.00 0.00 3.68
1921 2672 4.406456 ACCACAAGTCATCCAAATAGCAA 58.594 39.130 0.00 0.00 0.00 3.91
1922 2673 4.032960 ACCACAAGTCATCCAAATAGCA 57.967 40.909 0.00 0.00 0.00 3.49
1923 2674 4.380867 CCAACCACAAGTCATCCAAATAGC 60.381 45.833 0.00 0.00 0.00 2.97
1924 2675 5.009631 TCCAACCACAAGTCATCCAAATAG 58.990 41.667 0.00 0.00 0.00 1.73
1925 2676 4.991776 TCCAACCACAAGTCATCCAAATA 58.008 39.130 0.00 0.00 0.00 1.40
1972 2753 9.199645 GGAGGGAGTACTAGTTAACTTATTTCT 57.800 37.037 14.49 6.58 0.00 2.52
1993 2774 1.128200 TGACATTATGGGACGGAGGG 58.872 55.000 0.00 0.00 0.00 4.30
1994 2775 3.275617 TTTGACATTATGGGACGGAGG 57.724 47.619 0.00 0.00 0.00 4.30
1997 2778 5.564651 GCCATATTTTGACATTATGGGACGG 60.565 44.000 15.82 0.00 41.70 4.79
1998 2779 5.460646 GCCATATTTTGACATTATGGGACG 58.539 41.667 15.82 0.00 41.70 4.79
1999 2780 5.460646 CGCCATATTTTGACATTATGGGAC 58.539 41.667 15.82 5.28 41.70 4.46
2000 2781 4.022416 GCGCCATATTTTGACATTATGGGA 60.022 41.667 15.82 0.00 41.70 4.37
2001 2782 4.236935 GCGCCATATTTTGACATTATGGG 58.763 43.478 15.82 10.13 41.70 4.00
2002 2783 4.869215 TGCGCCATATTTTGACATTATGG 58.131 39.130 4.18 12.18 43.43 2.74
2072 2879 4.517285 TGAGCCAAACATAAGATCCACTC 58.483 43.478 0.00 0.00 0.00 3.51
2117 2949 4.322080 TTGGGATCGATATCACACTGAC 57.678 45.455 0.00 0.00 45.32 3.51
2246 3078 3.884895 TCCAGCTTCTTGTTGACTGAAA 58.115 40.909 0.00 0.00 0.00 2.69
2293 3125 9.559958 CGTCTGCTAAAAATCTGAAAACATAAT 57.440 29.630 0.00 0.00 0.00 1.28
2294 3126 7.537306 GCGTCTGCTAAAAATCTGAAAACATAA 59.463 33.333 0.00 0.00 38.39 1.90
2295 3127 7.021196 GCGTCTGCTAAAAATCTGAAAACATA 58.979 34.615 0.00 0.00 38.39 2.29
2296 3128 5.858581 GCGTCTGCTAAAAATCTGAAAACAT 59.141 36.000 0.00 0.00 38.39 2.71
2297 3129 5.212194 GCGTCTGCTAAAAATCTGAAAACA 58.788 37.500 0.00 0.00 38.39 2.83
2298 3130 5.115622 GTGCGTCTGCTAAAAATCTGAAAAC 59.884 40.000 0.00 0.00 43.34 2.43
2299 3131 5.212194 GTGCGTCTGCTAAAAATCTGAAAA 58.788 37.500 0.00 0.00 43.34 2.29
2302 3134 2.742053 GGTGCGTCTGCTAAAAATCTGA 59.258 45.455 0.00 0.00 43.34 3.27
2303 3135 2.483877 TGGTGCGTCTGCTAAAAATCTG 59.516 45.455 0.00 0.00 43.34 2.90
2304 3136 2.778299 TGGTGCGTCTGCTAAAAATCT 58.222 42.857 0.00 0.00 43.34 2.40
2460 3366 9.939802 GGAGAAATAGGAGTTACAAGACTAAAA 57.060 33.333 0.00 0.00 0.00 1.52
2461 3367 9.096823 TGGAGAAATAGGAGTTACAAGACTAAA 57.903 33.333 0.00 0.00 0.00 1.85
2462 3368 8.529476 GTGGAGAAATAGGAGTTACAAGACTAA 58.471 37.037 0.00 0.00 0.00 2.24
2463 3369 7.123847 GGTGGAGAAATAGGAGTTACAAGACTA 59.876 40.741 0.00 0.00 0.00 2.59
2464 3370 6.070710 GGTGGAGAAATAGGAGTTACAAGACT 60.071 42.308 0.00 0.00 0.00 3.24
2465 3371 6.107343 GGTGGAGAAATAGGAGTTACAAGAC 58.893 44.000 0.00 0.00 0.00 3.01
2466 3372 5.105473 CGGTGGAGAAATAGGAGTTACAAGA 60.105 44.000 0.00 0.00 0.00 3.02
2467 3373 5.109903 CGGTGGAGAAATAGGAGTTACAAG 58.890 45.833 0.00 0.00 0.00 3.16
2468 3374 4.529377 ACGGTGGAGAAATAGGAGTTACAA 59.471 41.667 0.00 0.00 0.00 2.41
2469 3375 4.091549 ACGGTGGAGAAATAGGAGTTACA 58.908 43.478 0.00 0.00 0.00 2.41
2470 3376 4.732672 ACGGTGGAGAAATAGGAGTTAC 57.267 45.455 0.00 0.00 0.00 2.50
2471 3377 5.246656 TCAAACGGTGGAGAAATAGGAGTTA 59.753 40.000 0.00 0.00 0.00 2.24
2472 3378 4.041198 TCAAACGGTGGAGAAATAGGAGTT 59.959 41.667 0.00 0.00 0.00 3.01
2473 3379 3.581332 TCAAACGGTGGAGAAATAGGAGT 59.419 43.478 0.00 0.00 0.00 3.85
2474 3380 4.202245 TCAAACGGTGGAGAAATAGGAG 57.798 45.455 0.00 0.00 0.00 3.69
2475 3381 4.679639 CGATCAAACGGTGGAGAAATAGGA 60.680 45.833 0.00 0.00 0.00 2.94
2476 3382 3.555956 CGATCAAACGGTGGAGAAATAGG 59.444 47.826 0.00 0.00 0.00 2.57
2477 3383 3.001330 GCGATCAAACGGTGGAGAAATAG 59.999 47.826 0.00 0.00 0.00 1.73
2478 3384 2.933906 GCGATCAAACGGTGGAGAAATA 59.066 45.455 0.00 0.00 0.00 1.40
2479 3385 1.737793 GCGATCAAACGGTGGAGAAAT 59.262 47.619 0.00 0.00 0.00 2.17
2480 3386 1.153353 GCGATCAAACGGTGGAGAAA 58.847 50.000 0.00 0.00 0.00 2.52
2481 3387 0.034198 TGCGATCAAACGGTGGAGAA 59.966 50.000 0.00 0.00 0.00 2.87
2482 3388 0.389817 CTGCGATCAAACGGTGGAGA 60.390 55.000 0.00 0.00 0.00 3.71
2483 3389 1.970917 GCTGCGATCAAACGGTGGAG 61.971 60.000 0.00 0.00 0.00 3.86
2484 3390 2.032634 GCTGCGATCAAACGGTGGA 61.033 57.895 0.00 0.00 0.00 4.02
2485 3391 2.480555 GCTGCGATCAAACGGTGG 59.519 61.111 0.00 0.00 0.00 4.61
2486 3392 1.896339 TTCGCTGCGATCAAACGGTG 61.896 55.000 26.51 0.00 35.23 4.94
2487 3393 1.019278 ATTCGCTGCGATCAAACGGT 61.019 50.000 26.51 2.14 35.23 4.83
2488 3394 0.587242 CATTCGCTGCGATCAAACGG 60.587 55.000 26.51 6.62 35.23 4.44
2489 3395 0.369931 TCATTCGCTGCGATCAAACG 59.630 50.000 26.51 3.08 35.23 3.60
2490 3396 2.169179 GTTCATTCGCTGCGATCAAAC 58.831 47.619 26.51 22.58 35.23 2.93
2491 3397 1.201910 CGTTCATTCGCTGCGATCAAA 60.202 47.619 26.51 16.13 35.23 2.69
2492 3398 0.369931 CGTTCATTCGCTGCGATCAA 59.630 50.000 26.51 15.15 35.23 2.57
2493 3399 1.420641 CCGTTCATTCGCTGCGATCA 61.421 55.000 26.51 12.58 35.23 2.92
2494 3400 1.273887 CCGTTCATTCGCTGCGATC 59.726 57.895 26.51 12.43 35.23 3.69
2495 3401 2.813179 GCCGTTCATTCGCTGCGAT 61.813 57.895 26.51 12.93 35.23 4.58
2496 3402 3.487202 GCCGTTCATTCGCTGCGA 61.487 61.111 22.24 22.24 0.00 5.10
2497 3403 4.520846 GGCCGTTCATTCGCTGCG 62.521 66.667 17.25 17.25 0.00 5.18
2498 3404 4.179579 GGGCCGTTCATTCGCTGC 62.180 66.667 0.00 0.00 0.00 5.25
2499 3405 2.587322 TAGGGGCCGTTCATTCGCTG 62.587 60.000 3.09 0.00 0.00 5.18
2500 3406 1.906105 TTAGGGGCCGTTCATTCGCT 61.906 55.000 3.09 0.00 0.00 4.93
2501 3407 1.027792 TTTAGGGGCCGTTCATTCGC 61.028 55.000 3.09 0.00 0.00 4.70
2502 3408 1.675552 ATTTAGGGGCCGTTCATTCG 58.324 50.000 3.09 0.00 0.00 3.34
2503 3409 2.032924 CGAATTTAGGGGCCGTTCATTC 59.967 50.000 3.09 11.34 0.00 2.67
2504 3410 2.021457 CGAATTTAGGGGCCGTTCATT 58.979 47.619 3.09 3.07 0.00 2.57
2505 3411 1.675552 CGAATTTAGGGGCCGTTCAT 58.324 50.000 3.09 0.00 0.00 2.57
2506 3412 1.027792 GCGAATTTAGGGGCCGTTCA 61.028 55.000 3.09 0.00 0.00 3.18
2507 3413 1.721664 GGCGAATTTAGGGGCCGTTC 61.722 60.000 3.09 0.00 35.59 3.95
2508 3414 1.751544 GGCGAATTTAGGGGCCGTT 60.752 57.895 3.09 0.00 35.59 4.44
2509 3415 2.124445 GGCGAATTTAGGGGCCGT 60.124 61.111 3.37 3.37 35.59 5.68
2511 3417 0.673985 GATTGGCGAATTTAGGGGCC 59.326 55.000 0.00 0.00 45.76 5.80
2512 3418 1.067060 GTGATTGGCGAATTTAGGGGC 59.933 52.381 0.00 0.00 0.00 5.80
2513 3419 1.681264 GGTGATTGGCGAATTTAGGGG 59.319 52.381 0.00 0.00 0.00 4.79
2514 3420 1.333619 CGGTGATTGGCGAATTTAGGG 59.666 52.381 0.00 0.00 0.00 3.53
2515 3421 2.014128 ACGGTGATTGGCGAATTTAGG 58.986 47.619 0.00 0.00 0.00 2.69
2516 3422 4.093703 TGTTACGGTGATTGGCGAATTTAG 59.906 41.667 0.00 0.00 0.00 1.85
2517 3423 4.001652 TGTTACGGTGATTGGCGAATTTA 58.998 39.130 0.00 0.00 0.00 1.40
2518 3424 2.814919 TGTTACGGTGATTGGCGAATTT 59.185 40.909 0.00 0.00 0.00 1.82
2519 3425 2.428491 TGTTACGGTGATTGGCGAATT 58.572 42.857 0.00 0.00 0.00 2.17
2520 3426 2.102070 TGTTACGGTGATTGGCGAAT 57.898 45.000 0.00 0.00 0.00 3.34
2521 3427 2.102070 ATGTTACGGTGATTGGCGAA 57.898 45.000 0.00 0.00 0.00 4.70
2522 3428 2.102070 AATGTTACGGTGATTGGCGA 57.898 45.000 0.00 0.00 0.00 5.54
2523 3429 2.095466 ACAAATGTTACGGTGATTGGCG 60.095 45.455 0.00 0.00 0.00 5.69
2524 3430 3.569250 ACAAATGTTACGGTGATTGGC 57.431 42.857 0.00 0.00 0.00 4.52
2525 3431 9.627395 TTTATTTACAAATGTTACGGTGATTGG 57.373 29.630 0.00 0.00 0.00 3.16
2565 3473 5.536161 ACAAGACAAATGTGGTAAGCAATCT 59.464 36.000 0.00 0.00 0.00 2.40
2581 3489 5.560722 TTTAGTCTGGATCCACAAGACAA 57.439 39.130 26.08 17.81 32.46 3.18
2586 3494 8.739039 CAACAATTATTTAGTCTGGATCCACAA 58.261 33.333 11.44 0.00 0.00 3.33
2679 3587 5.106712 ACACATGTAGGCGTTAACATTTCTG 60.107 40.000 6.39 0.00 34.12 3.02
2680 3588 5.001232 ACACATGTAGGCGTTAACATTTCT 58.999 37.500 6.39 0.00 34.12 2.52
2681 3589 5.086058 CACACATGTAGGCGTTAACATTTC 58.914 41.667 6.39 0.00 34.12 2.17
2682 3590 4.083003 CCACACATGTAGGCGTTAACATTT 60.083 41.667 6.39 0.00 34.12 2.32
2683 3591 3.438781 CCACACATGTAGGCGTTAACATT 59.561 43.478 6.39 0.00 34.12 2.71
2684 3592 3.006940 CCACACATGTAGGCGTTAACAT 58.993 45.455 6.39 0.00 36.78 2.71
2685 3593 2.418692 CCACACATGTAGGCGTTAACA 58.581 47.619 6.39 0.00 0.00 2.41
2686 3594 1.735571 CCCACACATGTAGGCGTTAAC 59.264 52.381 10.31 0.00 0.00 2.01
2687 3595 1.946747 GCCCACACATGTAGGCGTTAA 60.947 52.381 15.57 0.00 42.49 2.01
2688 3596 0.391927 GCCCACACATGTAGGCGTTA 60.392 55.000 15.57 0.00 42.49 3.18
2689 3597 1.674322 GCCCACACATGTAGGCGTT 60.674 57.895 15.57 0.00 42.49 4.84
2690 3598 2.046314 GCCCACACATGTAGGCGT 60.046 61.111 15.57 0.00 42.49 5.68
2693 3601 0.321210 TCAACGCCCACACATGTAGG 60.321 55.000 0.00 3.53 0.00 3.18
2694 3602 0.796312 GTCAACGCCCACACATGTAG 59.204 55.000 0.00 0.00 0.00 2.74
2695 3603 0.604243 GGTCAACGCCCACACATGTA 60.604 55.000 0.00 0.00 0.00 2.29
2696 3604 1.896660 GGTCAACGCCCACACATGT 60.897 57.895 0.00 0.00 0.00 3.21
2697 3605 1.243342 ATGGTCAACGCCCACACATG 61.243 55.000 0.00 0.00 34.07 3.21
2698 3606 0.960364 GATGGTCAACGCCCACACAT 60.960 55.000 0.00 0.00 34.07 3.21
2699 3607 1.599518 GATGGTCAACGCCCACACA 60.600 57.895 0.00 0.00 34.07 3.72
2700 3608 1.298859 GAGATGGTCAACGCCCACAC 61.299 60.000 0.00 0.00 34.07 3.82
2701 3609 1.003839 GAGATGGTCAACGCCCACA 60.004 57.895 0.00 0.00 34.07 4.17
2702 3610 2.100631 CGAGATGGTCAACGCCCAC 61.101 63.158 0.00 0.00 34.07 4.61
2703 3611 2.264480 CGAGATGGTCAACGCCCA 59.736 61.111 0.00 0.00 36.16 5.36
2704 3612 1.810030 GTCGAGATGGTCAACGCCC 60.810 63.158 0.00 0.00 0.00 6.13
2705 3613 1.810030 GGTCGAGATGGTCAACGCC 60.810 63.158 0.00 0.00 0.00 5.68
2706 3614 1.080093 TGGTCGAGATGGTCAACGC 60.080 57.895 0.00 0.00 0.00 4.84
2707 3615 0.038618 TGTGGTCGAGATGGTCAACG 60.039 55.000 0.00 0.00 0.00 4.10
2708 3616 1.429463 GTGTGGTCGAGATGGTCAAC 58.571 55.000 0.00 0.00 0.00 3.18
2709 3617 0.038618 CGTGTGGTCGAGATGGTCAA 60.039 55.000 0.00 0.00 0.00 3.18
2710 3618 1.584495 CGTGTGGTCGAGATGGTCA 59.416 57.895 0.00 0.00 0.00 4.02
2711 3619 1.805945 GCGTGTGGTCGAGATGGTC 60.806 63.158 0.00 0.00 0.00 4.02
2712 3620 2.261671 GCGTGTGGTCGAGATGGT 59.738 61.111 0.00 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.