Multiple sequence alignment - TraesCS3B01G565200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G565200 chr3B 100.000 3440 0 0 1 3440 798167018 798163579 0.000000e+00 6353.0
1 TraesCS3B01G565200 chr3B 76.864 389 40 22 341 703 705503509 705503873 1.270000e-39 174.0
2 TraesCS3B01G565200 chr3B 76.786 392 35 28 341 703 708438150 708438514 5.900000e-38 169.0
3 TraesCS3B01G565200 chr3A 92.035 2310 99 37 759 3038 725268187 725265933 0.000000e+00 3168.0
4 TraesCS3B01G565200 chr3A 90.977 266 6 10 3064 3329 725265534 725265287 3.290000e-90 342.0
5 TraesCS3B01G565200 chr3A 80.508 472 37 27 27 484 725269081 725268651 9.270000e-81 311.0
6 TraesCS3B01G565200 chr3A 93.333 135 9 0 569 703 725268497 725268363 2.090000e-47 200.0
7 TraesCS3B01G565200 chr7D 92.968 1550 97 3 910 2455 15782598 15781057 0.000000e+00 2248.0
8 TraesCS3B01G565200 chr7D 91.912 136 11 0 2307 2442 15860455 15860590 1.260000e-44 191.0
9 TraesCS3B01G565200 chr7D 78.017 232 26 14 2464 2688 15781069 15780856 4.660000e-24 122.0
10 TraesCS3B01G565200 chr4A 94.266 1465 84 0 985 2449 719178281 719179745 0.000000e+00 2241.0
11 TraesCS3B01G565200 chr4A 92.773 595 43 0 1755 2349 719204667 719205261 0.000000e+00 861.0
12 TraesCS3B01G565200 chr4A 85.507 69 7 2 2649 2717 719093992 719093927 6.160000e-08 69.4
13 TraesCS3B01G565200 chr7A 90.471 1721 127 12 741 2455 56154024 56152335 0.000000e+00 2235.0
14 TraesCS3B01G565200 chr7A 92.819 1490 102 1 966 2455 5200410 5201894 0.000000e+00 2154.0
15 TraesCS3B01G565200 chr7A 93.119 1337 92 0 985 2321 5194599 5195935 0.000000e+00 1960.0
16 TraesCS3B01G565200 chr7A 90.845 568 39 4 911 1473 5222612 5223171 0.000000e+00 749.0
17 TraesCS3B01G565200 chr7A 90.152 528 42 6 1933 2455 14795804 14796326 0.000000e+00 678.0
18 TraesCS3B01G565200 chr7A 79.039 229 26 12 2467 2688 56152347 56152134 1.660000e-28 137.0
19 TraesCS3B01G565200 chr7A 78.603 229 27 12 2467 2688 5201882 5202095 7.750000e-27 132.0
20 TraesCS3B01G565200 chr7A 78.125 224 27 12 2472 2688 56117842 56117634 4.660000e-24 122.0
21 TraesCS3B01G565200 chr3D 93.958 1473 89 0 983 2455 585084898 585086370 0.000000e+00 2228.0
22 TraesCS3B01G565200 chrUn 86.747 996 103 9 1143 2122 51176104 51175122 0.000000e+00 1081.0
23 TraesCS3B01G565200 chr5A 78.731 583 44 38 131 688 107893219 107893746 1.990000e-82 316.0
24 TraesCS3B01G565200 chr5D 90.184 163 16 0 985 1147 506858228 506858390 2.690000e-51 213.0
25 TraesCS3B01G565200 chr2A 76.942 399 39 29 331 703 663564325 663563954 9.810000e-41 178.0
26 TraesCS3B01G565200 chr2A 77.041 392 34 26 341 703 556202789 556202425 1.270000e-39 174.0
27 TraesCS3B01G565200 chr4B 87.037 162 8 6 542 703 534347103 534346955 1.640000e-38 171.0
28 TraesCS3B01G565200 chr4B 87.037 162 8 3 542 703 670138245 670138393 1.640000e-38 171.0
29 TraesCS3B01G565200 chr1B 86.420 162 9 3 542 703 663347150 663347002 7.640000e-37 165.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G565200 chr3B 798163579 798167018 3439 True 6353.00 6353 100.00000 1 3440 1 chr3B.!!$R1 3439
1 TraesCS3B01G565200 chr3A 725265287 725269081 3794 True 1005.25 3168 89.21325 27 3329 4 chr3A.!!$R1 3302
2 TraesCS3B01G565200 chr7D 15780856 15782598 1742 True 1185.00 2248 85.49250 910 2688 2 chr7D.!!$R1 1778
3 TraesCS3B01G565200 chr4A 719178281 719179745 1464 False 2241.00 2241 94.26600 985 2449 1 chr4A.!!$F1 1464
4 TraesCS3B01G565200 chr4A 719204667 719205261 594 False 861.00 861 92.77300 1755 2349 1 chr4A.!!$F2 594
5 TraesCS3B01G565200 chr7A 5194599 5195935 1336 False 1960.00 1960 93.11900 985 2321 1 chr7A.!!$F1 1336
6 TraesCS3B01G565200 chr7A 56152134 56154024 1890 True 1186.00 2235 84.75500 741 2688 2 chr7A.!!$R2 1947
7 TraesCS3B01G565200 chr7A 5200410 5202095 1685 False 1143.00 2154 85.71100 966 2688 2 chr7A.!!$F4 1722
8 TraesCS3B01G565200 chr7A 5222612 5223171 559 False 749.00 749 90.84500 911 1473 1 chr7A.!!$F2 562
9 TraesCS3B01G565200 chr7A 14795804 14796326 522 False 678.00 678 90.15200 1933 2455 1 chr7A.!!$F3 522
10 TraesCS3B01G565200 chr3D 585084898 585086370 1472 False 2228.00 2228 93.95800 983 2455 1 chr3D.!!$F1 1472
11 TraesCS3B01G565200 chrUn 51175122 51176104 982 True 1081.00 1081 86.74700 1143 2122 1 chrUn.!!$R1 979
12 TraesCS3B01G565200 chr5A 107893219 107893746 527 False 316.00 316 78.73100 131 688 1 chr5A.!!$F1 557

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
86 87 0.034616 CCATGGCAGGTAGCTCTAGC 59.965 60.0 0.00 0.0 44.79 3.42 F
709 803 0.179127 CGCTCGCTCAATCCTCTGAA 60.179 55.0 0.00 0.0 0.00 3.02 F
2048 2424 0.254178 ATCATCAAGGCCAAGAGCGT 59.746 50.0 5.01 0.0 45.17 5.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1959 2335 0.103755 TCACATCCTCGATGAGCTGC 59.896 55.0 8.57 0.0 42.09 5.25 R
2286 2667 0.608640 ACGAGTCAAAGTAGGCCAGG 59.391 55.0 5.01 0.0 0.00 4.45 R
3351 4155 0.037326 ATCTGCTCGTGGCGAAAGAA 60.037 50.0 7.39 0.0 45.43 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.032071 CGTCGGCCCAAAGAACCT 59.968 61.111 0.00 0.00 0.00 3.50
18 19 1.294138 CGTCGGCCCAAAGAACCTA 59.706 57.895 0.00 0.00 0.00 3.08
19 20 0.739813 CGTCGGCCCAAAGAACCTAG 60.740 60.000 0.00 0.00 0.00 3.02
20 21 0.392595 GTCGGCCCAAAGAACCTAGG 60.393 60.000 7.41 7.41 0.00 3.02
21 22 0.838987 TCGGCCCAAAGAACCTAGGT 60.839 55.000 9.21 9.21 0.00 3.08
22 23 0.906775 CGGCCCAAAGAACCTAGGTA 59.093 55.000 16.67 0.00 0.00 3.08
23 24 1.406477 CGGCCCAAAGAACCTAGGTAC 60.406 57.143 16.67 0.00 0.00 3.34
24 25 1.064906 GGCCCAAAGAACCTAGGTACC 60.065 57.143 16.67 10.49 0.00 3.34
25 26 1.914108 GCCCAAAGAACCTAGGTACCT 59.086 52.381 20.57 20.57 0.00 3.08
26 27 2.307980 GCCCAAAGAACCTAGGTACCTT 59.692 50.000 22.11 17.94 0.00 3.50
27 28 3.245158 GCCCAAAGAACCTAGGTACCTTT 60.245 47.826 25.14 25.14 34.12 3.11
28 29 4.751964 GCCCAAAGAACCTAGGTACCTTTT 60.752 45.833 26.93 17.56 32.69 2.27
29 30 5.391256 CCCAAAGAACCTAGGTACCTTTTT 58.609 41.667 26.93 14.16 32.69 1.94
76 77 2.505405 CTTGATCAGATCCATGGCAGG 58.495 52.381 6.96 0.00 0.00 4.85
77 78 1.514983 TGATCAGATCCATGGCAGGT 58.485 50.000 6.96 0.00 0.00 4.00
78 79 2.693210 TGATCAGATCCATGGCAGGTA 58.307 47.619 6.96 0.00 0.00 3.08
79 80 2.636403 TGATCAGATCCATGGCAGGTAG 59.364 50.000 6.96 0.00 0.00 3.18
80 81 0.761187 TCAGATCCATGGCAGGTAGC 59.239 55.000 6.96 0.00 44.65 3.58
81 82 0.763652 CAGATCCATGGCAGGTAGCT 59.236 55.000 6.96 0.00 44.79 3.32
82 83 1.055040 AGATCCATGGCAGGTAGCTC 58.945 55.000 6.96 0.00 44.79 4.09
83 84 1.055040 GATCCATGGCAGGTAGCTCT 58.945 55.000 6.96 0.00 44.79 4.09
84 85 2.158249 AGATCCATGGCAGGTAGCTCTA 60.158 50.000 6.96 0.00 44.79 2.43
85 86 1.709578 TCCATGGCAGGTAGCTCTAG 58.290 55.000 6.96 0.00 44.79 2.43
86 87 0.034616 CCATGGCAGGTAGCTCTAGC 59.965 60.000 0.00 0.00 44.79 3.42
104 107 2.100989 AGCTGACTAAGTAACGGGAGG 58.899 52.381 0.00 0.00 0.00 4.30
105 108 1.136500 GCTGACTAAGTAACGGGAGGG 59.864 57.143 0.00 0.00 0.00 4.30
106 109 1.755380 CTGACTAAGTAACGGGAGGGG 59.245 57.143 0.00 0.00 0.00 4.79
107 110 1.117994 GACTAAGTAACGGGAGGGGG 58.882 60.000 0.00 0.00 0.00 5.40
160 163 3.357079 CCTTGCCGGCTGACACAC 61.357 66.667 29.70 0.00 0.00 3.82
161 164 2.591429 CTTGCCGGCTGACACACA 60.591 61.111 29.70 0.07 0.00 3.72
178 181 0.759346 ACAGACAGGACCACCAGTTC 59.241 55.000 0.00 0.00 36.05 3.01
210 213 3.243101 CGCCTCTACTACTGTACCATGTG 60.243 52.174 0.00 0.00 0.00 3.21
233 238 5.589452 TGTTGTTCCTACTACTAGCTCTAGC 59.411 44.000 0.00 0.00 36.66 3.42
245 250 2.074729 GCTCTAGCTCTAGTTGGGGA 57.925 55.000 0.00 0.00 38.21 4.81
246 251 2.604139 GCTCTAGCTCTAGTTGGGGAT 58.396 52.381 0.00 0.00 38.21 3.85
338 350 4.929479 AGATGAAGCTCGGACCTAGATAT 58.071 43.478 0.00 0.00 0.00 1.63
351 363 7.392673 TCGGACCTAGATATAAGAACCATACAC 59.607 40.741 0.00 0.00 0.00 2.90
352 364 7.176165 CGGACCTAGATATAAGAACCATACACA 59.824 40.741 0.00 0.00 0.00 3.72
353 365 8.867097 GGACCTAGATATAAGAACCATACACAA 58.133 37.037 0.00 0.00 0.00 3.33
363 375 1.277842 ACCATACACAACTGCGGATGA 59.722 47.619 10.13 0.00 0.00 2.92
364 376 1.665679 CCATACACAACTGCGGATGAC 59.334 52.381 10.13 0.00 0.00 3.06
365 377 2.345876 CATACACAACTGCGGATGACA 58.654 47.619 10.13 0.00 0.00 3.58
366 378 2.535012 TACACAACTGCGGATGACAA 57.465 45.000 10.13 0.00 0.00 3.18
367 379 1.674359 ACACAACTGCGGATGACAAA 58.326 45.000 10.13 0.00 0.00 2.83
368 380 1.333619 ACACAACTGCGGATGACAAAC 59.666 47.619 10.13 0.00 0.00 2.93
369 381 1.333308 CACAACTGCGGATGACAAACA 59.667 47.619 10.13 0.00 0.00 2.83
370 382 1.333619 ACAACTGCGGATGACAAACAC 59.666 47.619 10.13 0.00 0.00 3.32
371 383 1.603802 CAACTGCGGATGACAAACACT 59.396 47.619 0.00 0.00 0.00 3.55
372 384 1.512926 ACTGCGGATGACAAACACTC 58.487 50.000 0.00 0.00 0.00 3.51
373 385 1.070758 ACTGCGGATGACAAACACTCT 59.929 47.619 0.00 0.00 0.00 3.24
374 386 1.728971 CTGCGGATGACAAACACTCTC 59.271 52.381 0.00 0.00 0.00 3.20
375 387 1.344438 TGCGGATGACAAACACTCTCT 59.656 47.619 0.00 0.00 0.00 3.10
376 388 1.996191 GCGGATGACAAACACTCTCTC 59.004 52.381 0.00 0.00 0.00 3.20
388 400 8.103948 ACAAACACTCTCTCCAATTTAATCTG 57.896 34.615 0.00 0.00 0.00 2.90
407 423 4.800023 TCTGAAATTGCCATCATGATCCT 58.200 39.130 4.86 0.00 0.00 3.24
408 424 5.944135 TCTGAAATTGCCATCATGATCCTA 58.056 37.500 4.86 0.00 0.00 2.94
409 425 6.367161 TCTGAAATTGCCATCATGATCCTAA 58.633 36.000 4.86 1.49 0.00 2.69
411 427 5.892686 TGAAATTGCCATCATGATCCTAACA 59.107 36.000 4.86 0.00 0.00 2.41
413 429 6.795144 AATTGCCATCATGATCCTAACAAA 57.205 33.333 4.86 0.00 0.00 2.83
427 452 6.097915 TCCTAACAAACACTACTCCTCAAG 57.902 41.667 0.00 0.00 0.00 3.02
436 461 6.572167 ACACTACTCCTCAAGTAACTGTAC 57.428 41.667 0.00 0.00 39.98 2.90
456 481 6.495706 TGTACATTGTTTTGTTGCACGATTA 58.504 32.000 0.00 0.00 0.00 1.75
457 482 5.881637 ACATTGTTTTGTTGCACGATTAC 57.118 34.783 0.00 0.00 0.00 1.89
463 488 4.466567 TTTGTTGCACGATTACTGTCTG 57.533 40.909 0.00 0.00 0.00 3.51
472 497 5.651530 CACGATTACTGTCTGGTGTAGATT 58.348 41.667 0.00 0.00 37.83 2.40
473 498 5.744345 CACGATTACTGTCTGGTGTAGATTC 59.256 44.000 0.00 0.00 37.83 2.52
475 500 6.071560 ACGATTACTGTCTGGTGTAGATTCAA 60.072 38.462 0.00 0.00 37.83 2.69
484 509 9.685276 TGTCTGGTGTAGATTCAATCAAAATAT 57.315 29.630 0.00 0.00 37.83 1.28
507 569 5.798125 TTAGTAGAGGAGATGCTTGATGG 57.202 43.478 0.00 0.00 0.00 3.51
525 587 5.380900 TGATGGTTGGTAATTGTCTTGTGA 58.619 37.500 0.00 0.00 0.00 3.58
527 589 4.787551 TGGTTGGTAATTGTCTTGTGACT 58.212 39.130 0.00 0.00 43.29 3.41
529 591 5.067153 TGGTTGGTAATTGTCTTGTGACTTG 59.933 40.000 0.00 0.00 43.29 3.16
530 592 5.067283 GGTTGGTAATTGTCTTGTGACTTGT 59.933 40.000 0.00 0.00 43.29 3.16
533 595 5.065859 TGGTAATTGTCTTGTGACTTGTGTG 59.934 40.000 0.00 0.00 43.29 3.82
535 597 2.106477 TGTCTTGTGACTTGTGTGCA 57.894 45.000 0.00 0.00 43.29 4.57
536 598 2.642427 TGTCTTGTGACTTGTGTGCAT 58.358 42.857 0.00 0.00 43.29 3.96
540 617 2.847959 TGTGACTTGTGTGCATGTTG 57.152 45.000 0.00 0.00 33.81 3.33
544 621 0.746063 ACTTGTGTGCATGTTGGTGG 59.254 50.000 0.00 0.00 30.04 4.61
574 668 4.274459 AGCATACGATTTGATTTCTGCCTC 59.726 41.667 0.00 0.00 0.00 4.70
584 678 3.118847 TGATTTCTGCCTCTGCTCTACTG 60.119 47.826 0.00 0.00 38.71 2.74
589 683 4.793201 TCTGCCTCTGCTCTACTGTATTA 58.207 43.478 0.00 0.00 38.71 0.98
609 703 1.917495 CCTCATGGGTCATGGCTGA 59.083 57.895 0.00 0.00 41.66 4.26
628 722 4.708177 CTGATTGAATTCACCCGGACTAT 58.292 43.478 7.89 0.00 0.00 2.12
641 735 4.527427 ACCCGGACTATAGCTTATTCCTTC 59.473 45.833 0.73 0.00 0.00 3.46
643 737 5.471257 CCGGACTATAGCTTATTCCTTCAC 58.529 45.833 0.00 0.00 0.00 3.18
687 781 5.779529 AGTCAACTCAAGCAACAATTCAT 57.220 34.783 0.00 0.00 0.00 2.57
690 784 5.400485 GTCAACTCAAGCAACAATTCATGTC 59.600 40.000 0.00 0.00 42.99 3.06
703 797 0.528466 TCATGTCGCTCGCTCAATCC 60.528 55.000 0.00 0.00 0.00 3.01
704 798 0.529337 CATGTCGCTCGCTCAATCCT 60.529 55.000 0.00 0.00 0.00 3.24
705 799 0.249238 ATGTCGCTCGCTCAATCCTC 60.249 55.000 0.00 0.00 0.00 3.71
708 802 1.032114 TCGCTCGCTCAATCCTCTGA 61.032 55.000 0.00 0.00 0.00 3.27
709 803 0.179127 CGCTCGCTCAATCCTCTGAA 60.179 55.000 0.00 0.00 0.00 3.02
711 805 1.404717 GCTCGCTCAATCCTCTGAACA 60.405 52.381 0.00 0.00 0.00 3.18
712 806 2.741228 GCTCGCTCAATCCTCTGAACAT 60.741 50.000 0.00 0.00 0.00 2.71
714 808 3.264947 TCGCTCAATCCTCTGAACATTG 58.735 45.455 3.04 3.04 0.00 2.82
736 954 5.173664 TGCATCTATCCTCTGAATATTGCG 58.826 41.667 0.00 0.00 0.00 4.85
737 955 5.047092 TGCATCTATCCTCTGAATATTGCGA 60.047 40.000 0.00 0.00 0.00 5.10
738 956 5.871524 GCATCTATCCTCTGAATATTGCGAA 59.128 40.000 0.00 0.00 0.00 4.70
739 957 6.369890 GCATCTATCCTCTGAATATTGCGAAA 59.630 38.462 0.00 0.00 0.00 3.46
783 1001 4.806640 CAGTTATCCACTGCCCATTTTT 57.193 40.909 0.00 0.00 46.70 1.94
799 1019 6.813649 GCCCATTTTTCTGGATAAGTTTTCTC 59.186 38.462 0.00 0.00 38.69 2.87
815 1035 5.639931 AGTTTTCTCAAACCTCTATTCGCTC 59.360 40.000 0.00 0.00 43.08 5.03
816 1036 3.422417 TCTCAAACCTCTATTCGCTCG 57.578 47.619 0.00 0.00 0.00 5.03
817 1037 1.855360 CTCAAACCTCTATTCGCTCGC 59.145 52.381 0.00 0.00 0.00 5.03
818 1038 1.476891 TCAAACCTCTATTCGCTCGCT 59.523 47.619 0.00 0.00 0.00 4.93
831 1051 1.135972 CGCTCGCTGCAAACATTTACT 60.136 47.619 0.00 0.00 43.06 2.24
832 1052 2.509870 GCTCGCTGCAAACATTTACTC 58.490 47.619 0.00 0.00 42.31 2.59
834 1054 3.740590 CTCGCTGCAAACATTTACTCAG 58.259 45.455 0.00 0.00 0.00 3.35
835 1055 3.398406 TCGCTGCAAACATTTACTCAGA 58.602 40.909 0.00 0.00 0.00 3.27
836 1056 3.433274 TCGCTGCAAACATTTACTCAGAG 59.567 43.478 0.00 0.00 0.00 3.35
837 1057 3.187227 CGCTGCAAACATTTACTCAGAGT 59.813 43.478 8.50 8.50 0.00 3.24
860 1084 1.876156 CTGAAGCTTGTTCCTGTGTCC 59.124 52.381 2.10 0.00 0.00 4.02
887 1111 6.854496 GCATATGCATCATCATTTGGTTTT 57.146 33.333 22.84 0.00 41.59 2.43
908 1132 9.543783 GGTTTTGGTTTTGGTTTGTATATACAA 57.456 29.630 21.73 21.73 43.80 2.41
928 1160 4.202151 ACAAGCAGGCTTTTAACCTTTCTG 60.202 41.667 3.30 0.00 34.42 3.02
940 1172 1.214062 CTTTCTGGCGAGCGAGACT 59.786 57.895 9.27 0.00 30.70 3.24
979 1215 3.806625 AACTTTGTGTTTGCTGCATCT 57.193 38.095 1.84 0.00 34.84 2.90
980 1216 3.360249 ACTTTGTGTTTGCTGCATCTC 57.640 42.857 1.84 2.06 0.00 2.75
981 1217 2.954318 ACTTTGTGTTTGCTGCATCTCT 59.046 40.909 1.84 0.00 0.00 3.10
982 1218 3.382546 ACTTTGTGTTTGCTGCATCTCTT 59.617 39.130 1.84 0.00 0.00 2.85
983 1219 4.142093 ACTTTGTGTTTGCTGCATCTCTTT 60.142 37.500 1.84 0.00 0.00 2.52
1248 1522 4.021925 AAGGCTGGTGCTCCGGTC 62.022 66.667 10.32 10.32 44.51 4.79
1375 1649 3.178325 GAGCGTGGACTCCTCTACT 57.822 57.895 0.00 0.00 0.00 2.57
1377 1651 2.641305 GAGCGTGGACTCCTCTACTTA 58.359 52.381 0.00 0.00 0.00 2.24
1923 2299 2.440409 GCTGCTTCCAAGATCTTCCAA 58.560 47.619 4.57 0.21 0.00 3.53
1959 2335 1.569493 CGAAACTGTGGACAAGGCG 59.431 57.895 0.00 0.00 0.00 5.52
2047 2423 0.661552 CATCATCAAGGCCAAGAGCG 59.338 55.000 5.01 0.00 45.17 5.03
2048 2424 0.254178 ATCATCAAGGCCAAGAGCGT 59.746 50.000 5.01 0.00 45.17 5.07
2067 2443 2.761465 GGAGAAGGGATGGGGCCTG 61.761 68.421 0.84 0.00 0.00 4.85
2093 2469 2.108566 CGAGCTGGCCAGGATCTG 59.891 66.667 33.46 9.13 0.00 2.90
2217 2598 1.129917 AGGAGATCATGGACAGGCAG 58.870 55.000 0.00 0.00 0.00 4.85
2262 2643 2.126888 GCCATCAACAACGGCGTG 60.127 61.111 15.70 10.75 35.79 5.34
2316 2697 1.835494 TTGACTCGTACAGGAGGGAG 58.165 55.000 4.16 0.00 38.39 4.30
2538 2925 7.546667 GTCGGTAGGTATATCTTTTGTTGTTGA 59.453 37.037 0.00 0.00 0.00 3.18
2539 2926 7.762615 TCGGTAGGTATATCTTTTGTTGTTGAG 59.237 37.037 0.00 0.00 0.00 3.02
2540 2927 7.548075 CGGTAGGTATATCTTTTGTTGTTGAGT 59.452 37.037 0.00 0.00 0.00 3.41
2541 2928 8.880750 GGTAGGTATATCTTTTGTTGTTGAGTC 58.119 37.037 0.00 0.00 0.00 3.36
2542 2929 7.923414 AGGTATATCTTTTGTTGTTGAGTCC 57.077 36.000 0.00 0.00 0.00 3.85
2543 2930 7.690256 AGGTATATCTTTTGTTGTTGAGTCCT 58.310 34.615 0.00 0.00 0.00 3.85
2636 3031 8.890718 GTGTATTTATTTTCTACAAGGAGGTCC 58.109 37.037 0.00 0.00 0.00 4.46
2641 3036 0.970937 TCTACAAGGAGGTCCAGCCG 60.971 60.000 0.00 0.00 43.70 5.52
2657 3055 2.294791 CAGCCGGTATTCTCTCCACTAG 59.705 54.545 1.90 0.00 0.00 2.57
2730 3128 5.278463 CGGATTTCGCCATCCTGAATTTTAT 60.278 40.000 10.09 0.00 40.80 1.40
2731 3129 6.072728 CGGATTTCGCCATCCTGAATTTTATA 60.073 38.462 10.09 0.00 40.80 0.98
2732 3130 7.362056 CGGATTTCGCCATCCTGAATTTTATAT 60.362 37.037 10.09 0.00 40.80 0.86
2733 3131 8.956426 GGATTTCGCCATCCTGAATTTTATATA 58.044 33.333 5.64 0.00 39.93 0.86
2735 3133 6.985188 TCGCCATCCTGAATTTTATATAGC 57.015 37.500 0.00 0.00 0.00 2.97
2759 3157 9.906660 AGCATGAAGAAATAAAATACGTTTTCA 57.093 25.926 9.97 0.00 38.44 2.69
2760 3158 9.937577 GCATGAAGAAATAAAATACGTTTTCAC 57.062 29.630 9.97 5.24 38.44 3.18
2764 3162 9.937577 GAAGAAATAAAATACGTTTTCACATGC 57.062 29.630 9.97 0.00 38.44 4.06
2765 3163 8.460831 AGAAATAAAATACGTTTTCACATGCC 57.539 30.769 9.97 0.00 38.44 4.40
2766 3164 8.303876 AGAAATAAAATACGTTTTCACATGCCT 58.696 29.630 9.97 0.00 38.44 4.75
2767 3165 7.810766 AATAAAATACGTTTTCACATGCCTG 57.189 32.000 0.00 0.00 38.44 4.85
2768 3166 2.919666 ATACGTTTTCACATGCCTGC 57.080 45.000 0.00 0.00 0.00 4.85
2769 3167 0.878416 TACGTTTTCACATGCCTGCC 59.122 50.000 0.00 0.00 0.00 4.85
2770 3168 0.823356 ACGTTTTCACATGCCTGCCT 60.823 50.000 0.00 0.00 0.00 4.75
2771 3169 0.387622 CGTTTTCACATGCCTGCCTG 60.388 55.000 0.00 0.00 0.00 4.85
2772 3170 0.675633 GTTTTCACATGCCTGCCTGT 59.324 50.000 0.00 0.00 0.00 4.00
2773 3171 0.675083 TTTTCACATGCCTGCCTGTG 59.325 50.000 17.93 17.93 41.66 3.66
2774 3172 0.467844 TTTCACATGCCTGCCTGTGT 60.468 50.000 21.48 6.73 41.27 3.72
2798 3222 3.012518 CCACTTATGCTTCCTGGTCTTG 58.987 50.000 0.00 0.00 0.00 3.02
2812 3236 2.618241 TGGTCTTGCTGTAGTGCTTTTG 59.382 45.455 0.00 0.00 0.00 2.44
2848 3272 1.130955 GCATTCTGTTTGTTGTGCCG 58.869 50.000 0.00 0.00 0.00 5.69
2852 3276 4.675146 GCATTCTGTTTGTTGTGCCGATAT 60.675 41.667 0.00 0.00 0.00 1.63
2853 3277 4.418013 TTCTGTTTGTTGTGCCGATATG 57.582 40.909 0.00 0.00 0.00 1.78
2884 3308 4.402155 TGTTTGGAAGAGAAGCATGTTTGT 59.598 37.500 0.00 0.00 0.00 2.83
2893 3318 3.891366 AGAAGCATGTTTGTTTGCCTAGT 59.109 39.130 0.00 0.00 39.72 2.57
2912 3337 2.763215 CCCTGCCTGCCCTGTTTA 59.237 61.111 0.00 0.00 0.00 2.01
2917 3342 1.474077 CTGCCTGCCCTGTTTATGTTC 59.526 52.381 0.00 0.00 0.00 3.18
2920 3345 2.094545 GCCTGCCCTGTTTATGTTCTTG 60.095 50.000 0.00 0.00 0.00 3.02
2921 3346 3.157087 CCTGCCCTGTTTATGTTCTTGT 58.843 45.455 0.00 0.00 0.00 3.16
2923 3348 4.764823 CCTGCCCTGTTTATGTTCTTGTTA 59.235 41.667 0.00 0.00 0.00 2.41
2924 3349 5.335661 CCTGCCCTGTTTATGTTCTTGTTAC 60.336 44.000 0.00 0.00 0.00 2.50
2925 3350 5.381757 TGCCCTGTTTATGTTCTTGTTACT 58.618 37.500 0.00 0.00 0.00 2.24
2926 3351 5.240623 TGCCCTGTTTATGTTCTTGTTACTG 59.759 40.000 0.00 0.00 0.00 2.74
2927 3352 5.335661 GCCCTGTTTATGTTCTTGTTACTGG 60.336 44.000 0.00 0.00 0.00 4.00
2928 3353 6.001460 CCCTGTTTATGTTCTTGTTACTGGA 58.999 40.000 0.00 0.00 0.00 3.86
2929 3354 6.659242 CCCTGTTTATGTTCTTGTTACTGGAT 59.341 38.462 0.00 0.00 0.00 3.41
2930 3355 7.148239 CCCTGTTTATGTTCTTGTTACTGGATC 60.148 40.741 0.00 0.00 0.00 3.36
2931 3356 7.390440 CCTGTTTATGTTCTTGTTACTGGATCA 59.610 37.037 0.00 0.00 0.00 2.92
2932 3357 8.862325 TGTTTATGTTCTTGTTACTGGATCAT 57.138 30.769 0.00 0.00 0.00 2.45
2957 3382 0.035317 TACAGCAGCACCAGACCTTG 59.965 55.000 0.00 0.00 0.00 3.61
3021 3450 3.647824 GGCTGATGAGGCGTATGC 58.352 61.111 0.00 0.00 41.71 3.14
3056 3507 0.249699 TATCCGTGTATGGGCTTGCG 60.250 55.000 0.00 0.00 0.00 4.85
3062 3513 1.933853 GTGTATGGGCTTGCGAAGTAG 59.066 52.381 0.00 0.00 0.00 2.57
3167 3971 8.454106 GGAGAAACGAGTACAAGTATAGTACAA 58.546 37.037 6.30 0.00 43.24 2.41
3176 3980 8.517878 AGTACAAGTATAGTACAAGCGAAAAGA 58.482 33.333 6.30 0.00 43.24 2.52
3219 4023 0.458543 CCAAGCGCATCGACTACACT 60.459 55.000 11.47 0.00 0.00 3.55
3220 4024 1.202256 CCAAGCGCATCGACTACACTA 60.202 52.381 11.47 0.00 0.00 2.74
3221 4025 2.112522 CAAGCGCATCGACTACACTAG 58.887 52.381 11.47 0.00 0.00 2.57
3222 4026 1.664873 AGCGCATCGACTACACTAGA 58.335 50.000 11.47 0.00 0.00 2.43
3223 4027 1.600013 AGCGCATCGACTACACTAGAG 59.400 52.381 11.47 0.00 0.00 2.43
3238 4042 3.056536 CACTAGAGTAGGAACAAGCAGCA 60.057 47.826 0.00 0.00 0.00 4.41
3276 4080 0.465460 TCAGCCTGGGTCAACACAAC 60.465 55.000 0.00 0.00 0.00 3.32
3290 4094 0.311790 CACAACAGCATCCGCAAGTT 59.688 50.000 0.00 0.00 42.27 2.66
3291 4095 0.593128 ACAACAGCATCCGCAAGTTC 59.407 50.000 0.00 0.00 42.27 3.01
3292 4096 0.877071 CAACAGCATCCGCAAGTTCT 59.123 50.000 0.00 0.00 42.27 3.01
3293 4097 1.267806 CAACAGCATCCGCAAGTTCTT 59.732 47.619 0.00 0.00 42.27 2.52
3307 4111 2.936202 AGTTCTTTCAGCTCCAAGCAA 58.064 42.857 1.29 0.00 45.56 3.91
3309 4113 1.901591 TCTTTCAGCTCCAAGCAAGG 58.098 50.000 1.29 0.00 45.56 3.61
3329 4133 5.990120 AGGACTGAAAATGAATTTCCAGG 57.010 39.130 6.91 0.00 45.67 4.45
3330 4134 5.644188 AGGACTGAAAATGAATTTCCAGGA 58.356 37.500 6.91 0.00 45.67 3.86
3331 4135 5.713861 AGGACTGAAAATGAATTTCCAGGAG 59.286 40.000 6.91 0.00 45.67 3.69
3332 4136 5.478332 GGACTGAAAATGAATTTCCAGGAGT 59.522 40.000 6.91 0.00 45.67 3.85
3333 4137 6.015095 GGACTGAAAATGAATTTCCAGGAGTT 60.015 38.462 6.91 0.00 45.67 3.01
3334 4138 7.176690 GGACTGAAAATGAATTTCCAGGAGTTA 59.823 37.037 6.91 0.00 45.67 2.24
3335 4139 8.655935 ACTGAAAATGAATTTCCAGGAGTTAT 57.344 30.769 6.91 0.00 45.67 1.89
3336 4140 8.526147 ACTGAAAATGAATTTCCAGGAGTTATG 58.474 33.333 6.91 0.00 45.67 1.90
3337 4141 8.648698 TGAAAATGAATTTCCAGGAGTTATGA 57.351 30.769 0.00 0.00 45.67 2.15
3338 4142 9.087871 TGAAAATGAATTTCCAGGAGTTATGAA 57.912 29.630 0.00 0.00 45.67 2.57
3339 4143 9.358872 GAAAATGAATTTCCAGGAGTTATGAAC 57.641 33.333 0.00 0.00 41.35 3.18
3340 4144 8.421249 AAATGAATTTCCAGGAGTTATGAACA 57.579 30.769 0.00 0.00 0.00 3.18
3341 4145 8.421249 AATGAATTTCCAGGAGTTATGAACAA 57.579 30.769 0.00 0.00 0.00 2.83
3342 4146 7.831691 TGAATTTCCAGGAGTTATGAACAAA 57.168 32.000 0.00 0.00 0.00 2.83
3343 4147 8.243961 TGAATTTCCAGGAGTTATGAACAAAA 57.756 30.769 0.00 0.00 0.00 2.44
3344 4148 8.700051 TGAATTTCCAGGAGTTATGAACAAAAA 58.300 29.630 0.00 0.00 0.00 1.94
3363 4167 2.969443 AATCAACTTCTTTCGCCACG 57.031 45.000 0.00 0.00 0.00 4.94
3364 4168 2.163818 ATCAACTTCTTTCGCCACGA 57.836 45.000 0.00 0.00 0.00 4.35
3365 4169 1.497991 TCAACTTCTTTCGCCACGAG 58.502 50.000 0.00 0.00 37.14 4.18
3366 4170 0.110644 CAACTTCTTTCGCCACGAGC 60.111 55.000 0.00 0.00 37.14 5.03
3367 4171 0.531974 AACTTCTTTCGCCACGAGCA 60.532 50.000 0.00 0.00 44.04 4.26
3368 4172 0.946221 ACTTCTTTCGCCACGAGCAG 60.946 55.000 0.00 0.00 44.04 4.24
3369 4173 0.667487 CTTCTTTCGCCACGAGCAGA 60.667 55.000 0.00 0.00 44.04 4.26
3370 4174 0.037326 TTCTTTCGCCACGAGCAGAT 60.037 50.000 0.00 0.00 44.04 2.90
3371 4175 0.458543 TCTTTCGCCACGAGCAGATC 60.459 55.000 0.00 0.00 44.04 2.75
3372 4176 0.737367 CTTTCGCCACGAGCAGATCA 60.737 55.000 0.00 0.00 44.04 2.92
3373 4177 0.320334 TTTCGCCACGAGCAGATCAA 60.320 50.000 0.00 0.00 44.04 2.57
3374 4178 0.108186 TTCGCCACGAGCAGATCAAT 60.108 50.000 0.00 0.00 44.04 2.57
3375 4179 0.528466 TCGCCACGAGCAGATCAATC 60.528 55.000 0.00 0.00 44.04 2.67
3376 4180 0.807275 CGCCACGAGCAGATCAATCA 60.807 55.000 0.00 0.00 44.04 2.57
3377 4181 1.590932 GCCACGAGCAGATCAATCAT 58.409 50.000 0.00 0.00 42.97 2.45
3378 4182 1.530293 GCCACGAGCAGATCAATCATC 59.470 52.381 0.00 0.00 42.97 2.92
3379 4183 2.830104 CCACGAGCAGATCAATCATCA 58.170 47.619 0.00 0.00 33.29 3.07
3380 4184 3.200483 CCACGAGCAGATCAATCATCAA 58.800 45.455 0.00 0.00 33.29 2.57
3381 4185 3.002042 CCACGAGCAGATCAATCATCAAC 59.998 47.826 0.00 0.00 33.29 3.18
3382 4186 3.869832 CACGAGCAGATCAATCATCAACT 59.130 43.478 0.00 0.00 33.29 3.16
3383 4187 5.045872 CACGAGCAGATCAATCATCAACTA 58.954 41.667 0.00 0.00 33.29 2.24
3384 4188 5.175308 CACGAGCAGATCAATCATCAACTAG 59.825 44.000 0.00 0.00 33.29 2.57
3385 4189 5.163468 ACGAGCAGATCAATCATCAACTAGT 60.163 40.000 0.00 0.00 33.29 2.57
3386 4190 6.039829 ACGAGCAGATCAATCATCAACTAGTA 59.960 38.462 0.00 0.00 33.29 1.82
3387 4191 6.920210 CGAGCAGATCAATCATCAACTAGTAA 59.080 38.462 0.00 0.00 33.29 2.24
3388 4192 7.436376 CGAGCAGATCAATCATCAACTAGTAAA 59.564 37.037 0.00 0.00 33.29 2.01
3389 4193 9.102757 GAGCAGATCAATCATCAACTAGTAAAA 57.897 33.333 0.00 0.00 33.29 1.52
3390 4194 8.887717 AGCAGATCAATCATCAACTAGTAAAAC 58.112 33.333 0.00 0.00 33.29 2.43
3391 4195 7.848051 GCAGATCAATCATCAACTAGTAAAACG 59.152 37.037 0.00 0.00 33.29 3.60
3392 4196 7.848051 CAGATCAATCATCAACTAGTAAAACGC 59.152 37.037 0.00 0.00 33.29 4.84
3393 4197 7.766278 AGATCAATCATCAACTAGTAAAACGCT 59.234 33.333 0.00 0.00 33.29 5.07
3394 4198 7.290857 TCAATCATCAACTAGTAAAACGCTC 57.709 36.000 0.00 0.00 0.00 5.03
3395 4199 6.871492 TCAATCATCAACTAGTAAAACGCTCA 59.129 34.615 0.00 0.00 0.00 4.26
3396 4200 7.549134 TCAATCATCAACTAGTAAAACGCTCAT 59.451 33.333 0.00 0.00 0.00 2.90
3397 4201 7.849804 ATCATCAACTAGTAAAACGCTCATT 57.150 32.000 0.00 0.00 0.00 2.57
3398 4202 7.667043 TCATCAACTAGTAAAACGCTCATTT 57.333 32.000 0.00 0.00 0.00 2.32
3399 4203 8.094798 TCATCAACTAGTAAAACGCTCATTTT 57.905 30.769 0.00 0.00 35.89 1.82
3400 4204 8.227791 TCATCAACTAGTAAAACGCTCATTTTC 58.772 33.333 0.00 0.00 33.80 2.29
3401 4205 7.485418 TCAACTAGTAAAACGCTCATTTTCA 57.515 32.000 0.00 0.00 33.80 2.69
3402 4206 7.921787 TCAACTAGTAAAACGCTCATTTTCAA 58.078 30.769 0.00 0.00 33.80 2.69
3403 4207 8.399425 TCAACTAGTAAAACGCTCATTTTCAAA 58.601 29.630 0.00 0.00 33.80 2.69
3404 4208 9.180678 CAACTAGTAAAACGCTCATTTTCAAAT 57.819 29.630 0.00 0.00 33.80 2.32
3405 4209 8.728088 ACTAGTAAAACGCTCATTTTCAAATG 57.272 30.769 5.99 5.99 45.49 2.32
3406 4210 6.452244 AGTAAAACGCTCATTTTCAAATGC 57.548 33.333 7.31 0.00 44.15 3.56
3407 4211 4.373532 AAAACGCTCATTTTCAAATGCG 57.626 36.364 12.81 12.81 44.15 4.73
3408 4212 2.987413 ACGCTCATTTTCAAATGCGA 57.013 40.000 18.53 0.41 44.15 5.10
3409 4213 2.855180 ACGCTCATTTTCAAATGCGAG 58.145 42.857 18.53 12.15 44.15 5.03
3410 4214 2.226437 ACGCTCATTTTCAAATGCGAGT 59.774 40.909 18.53 12.67 44.15 4.18
3411 4215 3.435327 ACGCTCATTTTCAAATGCGAGTA 59.565 39.130 18.53 0.00 40.56 2.59
3412 4216 4.094887 ACGCTCATTTTCAAATGCGAGTAT 59.905 37.500 18.53 0.27 40.56 2.12
3413 4217 4.667948 CGCTCATTTTCAAATGCGAGTATC 59.332 41.667 10.06 0.00 44.15 2.24
3414 4218 5.572211 GCTCATTTTCAAATGCGAGTATCA 58.428 37.500 7.31 0.00 44.15 2.15
3415 4219 6.204359 GCTCATTTTCAAATGCGAGTATCAT 58.796 36.000 7.31 0.00 44.15 2.45
3416 4220 6.694411 GCTCATTTTCAAATGCGAGTATCATT 59.306 34.615 7.31 0.00 44.15 2.57
3417 4221 7.096722 GCTCATTTTCAAATGCGAGTATCATTC 60.097 37.037 7.31 0.00 44.15 2.67
3418 4222 7.195646 TCATTTTCAAATGCGAGTATCATTCC 58.804 34.615 7.31 0.00 44.15 3.01
3419 4223 6.507958 TTTTCAAATGCGAGTATCATTCCA 57.492 33.333 0.00 0.00 33.41 3.53
3420 4224 5.739752 TTCAAATGCGAGTATCATTCCAG 57.260 39.130 0.00 0.00 33.41 3.86
3421 4225 5.022282 TCAAATGCGAGTATCATTCCAGA 57.978 39.130 0.00 0.00 33.41 3.86
3422 4226 5.614308 TCAAATGCGAGTATCATTCCAGAT 58.386 37.500 0.00 0.00 33.41 2.90
3423 4227 5.698089 TCAAATGCGAGTATCATTCCAGATC 59.302 40.000 0.00 0.00 33.41 2.75
3424 4228 3.667497 TGCGAGTATCATTCCAGATCC 57.333 47.619 0.00 0.00 33.17 3.36
3425 4229 2.965147 TGCGAGTATCATTCCAGATCCA 59.035 45.455 0.00 0.00 33.17 3.41
3426 4230 3.580022 TGCGAGTATCATTCCAGATCCAT 59.420 43.478 0.00 0.00 33.17 3.41
3427 4231 4.772100 TGCGAGTATCATTCCAGATCCATA 59.228 41.667 0.00 0.00 33.17 2.74
3428 4232 5.105752 GCGAGTATCATTCCAGATCCATAC 58.894 45.833 0.00 0.00 33.17 2.39
3429 4233 5.655488 CGAGTATCATTCCAGATCCATACC 58.345 45.833 0.00 0.00 33.17 2.73
3430 4234 5.655488 GAGTATCATTCCAGATCCATACCG 58.345 45.833 0.00 0.00 33.17 4.02
3431 4235 3.988976 ATCATTCCAGATCCATACCGG 57.011 47.619 0.00 0.00 0.00 5.28
3432 4236 7.532888 GAGTATCATTCCAGATCCATACCGGA 61.533 46.154 9.46 0.00 41.93 5.14
3433 4237 9.240303 GAGTATCATTCCAGATCCATACCGGAG 62.240 48.148 9.46 0.00 41.22 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.739813 CTAGGTTCTTTGGGCCGACG 60.740 60.000 0.00 0.00 0.00 5.12
1 2 0.392595 CCTAGGTTCTTTGGGCCGAC 60.393 60.000 0.00 0.00 0.00 4.79
3 4 0.906775 TACCTAGGTTCTTTGGGCCG 59.093 55.000 22.11 0.00 0.00 6.13
4 5 1.064906 GGTACCTAGGTTCTTTGGGCC 60.065 57.143 22.11 0.00 0.00 5.80
5 6 1.914108 AGGTACCTAGGTTCTTTGGGC 59.086 52.381 22.11 0.77 0.00 5.36
6 7 4.652679 AAAGGTACCTAGGTTCTTTGGG 57.347 45.455 27.78 0.70 33.03 4.12
26 27 2.470057 ACCCAGCCAAGAAGGAAAAA 57.530 45.000 0.00 0.00 41.22 1.94
27 28 2.470057 AACCCAGCCAAGAAGGAAAA 57.530 45.000 0.00 0.00 41.22 2.29
28 29 2.225017 CCTAACCCAGCCAAGAAGGAAA 60.225 50.000 0.00 0.00 41.22 3.13
29 30 1.354368 CCTAACCCAGCCAAGAAGGAA 59.646 52.381 0.00 0.00 41.22 3.36
30 31 0.991920 CCTAACCCAGCCAAGAAGGA 59.008 55.000 0.00 0.00 41.22 3.36
31 32 0.681243 GCCTAACCCAGCCAAGAAGG 60.681 60.000 0.00 0.00 41.84 3.46
32 33 0.038166 TGCCTAACCCAGCCAAGAAG 59.962 55.000 0.00 0.00 0.00 2.85
33 34 0.038166 CTGCCTAACCCAGCCAAGAA 59.962 55.000 0.00 0.00 0.00 2.52
41 42 1.074775 CAAGCCACTGCCTAACCCA 59.925 57.895 0.00 0.00 38.69 4.51
79 80 3.243134 CCCGTTACTTAGTCAGCTAGAGC 60.243 52.174 0.00 0.00 42.49 4.09
80 81 4.197750 TCCCGTTACTTAGTCAGCTAGAG 58.802 47.826 0.00 0.00 0.00 2.43
81 82 4.197750 CTCCCGTTACTTAGTCAGCTAGA 58.802 47.826 0.00 0.00 0.00 2.43
82 83 3.315749 CCTCCCGTTACTTAGTCAGCTAG 59.684 52.174 0.00 0.00 0.00 3.42
83 84 3.285484 CCTCCCGTTACTTAGTCAGCTA 58.715 50.000 0.00 0.00 0.00 3.32
84 85 2.100989 CCTCCCGTTACTTAGTCAGCT 58.899 52.381 0.00 0.00 0.00 4.24
85 86 1.136500 CCCTCCCGTTACTTAGTCAGC 59.864 57.143 0.00 0.00 0.00 4.26
86 87 1.755380 CCCCTCCCGTTACTTAGTCAG 59.245 57.143 0.00 0.00 0.00 3.51
104 107 1.276622 TTCAACTAGCTGTCTCCCCC 58.723 55.000 0.00 0.00 0.00 5.40
105 108 3.536570 GAATTCAACTAGCTGTCTCCCC 58.463 50.000 0.00 0.00 0.00 4.81
106 109 3.119101 TCGAATTCAACTAGCTGTCTCCC 60.119 47.826 6.22 0.00 0.00 4.30
107 110 3.860536 GTCGAATTCAACTAGCTGTCTCC 59.139 47.826 6.22 0.00 0.00 3.71
108 111 4.486090 TGTCGAATTCAACTAGCTGTCTC 58.514 43.478 6.22 0.00 0.00 3.36
109 112 4.489810 CTGTCGAATTCAACTAGCTGTCT 58.510 43.478 6.22 0.00 0.00 3.41
110 113 3.061429 GCTGTCGAATTCAACTAGCTGTC 59.939 47.826 6.22 0.00 0.00 3.51
111 114 2.996621 GCTGTCGAATTCAACTAGCTGT 59.003 45.455 6.22 0.00 0.00 4.40
112 115 2.995939 TGCTGTCGAATTCAACTAGCTG 59.004 45.455 16.55 0.00 0.00 4.24
113 116 3.257393 CTGCTGTCGAATTCAACTAGCT 58.743 45.455 16.55 0.00 0.00 3.32
114 117 2.996621 ACTGCTGTCGAATTCAACTAGC 59.003 45.455 6.22 9.59 0.00 3.42
115 118 4.263209 CGTACTGCTGTCGAATTCAACTAG 59.737 45.833 6.22 1.01 0.00 2.57
116 119 4.163552 CGTACTGCTGTCGAATTCAACTA 58.836 43.478 6.22 0.00 0.00 2.24
117 120 2.987149 CGTACTGCTGTCGAATTCAACT 59.013 45.455 6.22 0.00 0.00 3.16
118 121 2.472397 GCGTACTGCTGTCGAATTCAAC 60.472 50.000 15.72 0.00 41.73 3.18
158 161 0.469917 AACTGGTGGTCCTGTCTGTG 59.530 55.000 0.00 0.00 43.46 3.66
159 162 0.759346 GAACTGGTGGTCCTGTCTGT 59.241 55.000 0.00 0.00 43.46 3.41
160 163 1.001406 GAGAACTGGTGGTCCTGTCTG 59.999 57.143 0.00 0.00 43.46 3.51
161 164 1.343069 GAGAACTGGTGGTCCTGTCT 58.657 55.000 0.00 0.00 43.46 3.41
210 213 6.063640 GCTAGAGCTAGTAGTAGGAACAAC 57.936 45.833 6.73 0.00 38.21 3.32
242 247 1.272147 ACAGAGAAAACAGGGCATCCC 60.272 52.381 0.00 0.00 45.90 3.85
243 248 2.206576 ACAGAGAAAACAGGGCATCC 57.793 50.000 0.00 0.00 0.00 3.51
299 311 6.369890 GCTTCATCTATCTATCATGCGGAAAA 59.630 38.462 0.00 0.00 0.00 2.29
303 315 5.008619 AGCTTCATCTATCTATCATGCGG 57.991 43.478 0.00 0.00 0.00 5.69
338 350 3.007074 TCCGCAGTTGTGTATGGTTCTTA 59.993 43.478 0.00 0.00 0.00 2.10
351 363 1.603802 AGTGTTTGTCATCCGCAGTTG 59.396 47.619 0.00 0.00 0.00 3.16
352 364 1.873591 GAGTGTTTGTCATCCGCAGTT 59.126 47.619 0.00 0.00 0.00 3.16
353 365 1.070758 AGAGTGTTTGTCATCCGCAGT 59.929 47.619 0.00 0.00 0.00 4.40
363 375 7.939039 TCAGATTAAATTGGAGAGAGTGTTTGT 59.061 33.333 0.00 0.00 0.00 2.83
364 376 8.327941 TCAGATTAAATTGGAGAGAGTGTTTG 57.672 34.615 0.00 0.00 0.00 2.93
365 377 8.924511 TTCAGATTAAATTGGAGAGAGTGTTT 57.075 30.769 0.00 0.00 0.00 2.83
366 378 8.924511 TTTCAGATTAAATTGGAGAGAGTGTT 57.075 30.769 0.00 0.00 0.00 3.32
367 379 9.525826 AATTTCAGATTAAATTGGAGAGAGTGT 57.474 29.630 0.00 0.00 37.60 3.55
368 380 9.784680 CAATTTCAGATTAAATTGGAGAGAGTG 57.215 33.333 12.17 0.00 46.20 3.51
388 400 6.395426 TGTTAGGATCATGATGGCAATTTC 57.605 37.500 14.30 0.00 0.00 2.17
395 411 7.050377 AGTAGTGTTTGTTAGGATCATGATGG 58.950 38.462 14.30 0.00 0.00 3.51
402 418 6.282199 TGAGGAGTAGTGTTTGTTAGGATC 57.718 41.667 0.00 0.00 0.00 3.36
407 423 7.924412 CAGTTACTTGAGGAGTAGTGTTTGTTA 59.076 37.037 0.00 0.00 41.68 2.41
408 424 6.761714 CAGTTACTTGAGGAGTAGTGTTTGTT 59.238 38.462 0.00 0.00 41.68 2.83
409 425 6.127140 ACAGTTACTTGAGGAGTAGTGTTTGT 60.127 38.462 0.00 0.00 41.68 2.83
411 427 6.481434 ACAGTTACTTGAGGAGTAGTGTTT 57.519 37.500 0.00 0.00 41.68 2.83
413 429 6.066690 TGTACAGTTACTTGAGGAGTAGTGT 58.933 40.000 0.00 7.81 41.68 3.55
427 452 6.290851 CGTGCAACAAAACAATGTACAGTTAC 60.291 38.462 0.33 0.00 35.74 2.50
436 461 5.458452 ACAGTAATCGTGCAACAAAACAATG 59.542 36.000 0.00 0.00 35.74 2.82
456 481 5.745312 TGATTGAATCTACACCAGACAGT 57.255 39.130 6.73 0.00 35.62 3.55
457 482 7.439157 TTTTGATTGAATCTACACCAGACAG 57.561 36.000 6.73 0.00 35.62 3.51
484 509 5.663106 ACCATCAAGCATCTCCTCTACTAAA 59.337 40.000 0.00 0.00 0.00 1.85
485 510 5.211973 ACCATCAAGCATCTCCTCTACTAA 58.788 41.667 0.00 0.00 0.00 2.24
486 511 4.809193 ACCATCAAGCATCTCCTCTACTA 58.191 43.478 0.00 0.00 0.00 1.82
499 539 5.163513 CAAGACAATTACCAACCATCAAGC 58.836 41.667 0.00 0.00 0.00 4.01
500 540 6.016360 TCACAAGACAATTACCAACCATCAAG 60.016 38.462 0.00 0.00 0.00 3.02
501 541 5.830457 TCACAAGACAATTACCAACCATCAA 59.170 36.000 0.00 0.00 0.00 2.57
502 542 5.240623 GTCACAAGACAATTACCAACCATCA 59.759 40.000 0.00 0.00 44.34 3.07
503 543 5.699839 GTCACAAGACAATTACCAACCATC 58.300 41.667 0.00 0.00 44.34 3.51
525 587 0.746063 CCACCAACATGCACACAAGT 59.254 50.000 0.00 0.00 0.00 3.16
527 589 2.025767 GCCCACCAACATGCACACAA 62.026 55.000 0.00 0.00 0.00 3.33
529 591 2.025767 TTGCCCACCAACATGCACAC 62.026 55.000 0.00 0.00 32.63 3.82
530 592 1.759692 TTGCCCACCAACATGCACA 60.760 52.632 0.00 0.00 32.63 4.57
540 617 0.958382 TCGTATGCTTGTTGCCCACC 60.958 55.000 0.00 0.00 42.00 4.61
544 621 3.485947 TCAAATCGTATGCTTGTTGCC 57.514 42.857 0.00 0.00 42.00 4.52
557 634 2.681848 AGCAGAGGCAGAAATCAAATCG 59.318 45.455 0.00 0.00 44.61 3.34
558 635 3.946558 AGAGCAGAGGCAGAAATCAAATC 59.053 43.478 0.00 0.00 44.61 2.17
559 636 3.965694 AGAGCAGAGGCAGAAATCAAAT 58.034 40.909 0.00 0.00 44.61 2.32
560 637 3.430042 AGAGCAGAGGCAGAAATCAAA 57.570 42.857 0.00 0.00 44.61 2.69
561 638 3.517100 AGTAGAGCAGAGGCAGAAATCAA 59.483 43.478 0.00 0.00 44.61 2.57
562 639 3.102972 AGTAGAGCAGAGGCAGAAATCA 58.897 45.455 0.00 0.00 44.61 2.57
563 640 3.118811 ACAGTAGAGCAGAGGCAGAAATC 60.119 47.826 0.00 0.00 44.61 2.17
564 641 2.836981 ACAGTAGAGCAGAGGCAGAAAT 59.163 45.455 0.00 0.00 44.61 2.17
567 644 2.808906 TACAGTAGAGCAGAGGCAGA 57.191 50.000 0.00 0.00 44.61 4.26
574 668 5.468592 CATGAGGCTAATACAGTAGAGCAG 58.531 45.833 15.78 0.00 36.63 4.24
584 678 3.679389 CCATGACCCATGAGGCTAATAC 58.321 50.000 8.38 0.00 43.81 1.89
589 683 2.005266 AGCCATGACCCATGAGGCT 61.005 57.895 8.38 6.73 43.81 4.58
609 703 4.348168 AGCTATAGTCCGGGTGAATTCAAT 59.652 41.667 10.35 0.00 0.00 2.57
628 722 6.125029 AGTAGTACGGTGAAGGAATAAGCTA 58.875 40.000 0.00 0.00 0.00 3.32
641 735 4.034858 TGAGAAAGCGATAGTAGTACGGTG 59.965 45.833 0.00 0.00 37.78 4.94
643 737 4.808077 TGAGAAAGCGATAGTAGTACGG 57.192 45.455 0.00 0.00 39.35 4.02
687 781 1.139734 GAGGATTGAGCGAGCGACA 59.860 57.895 0.00 0.00 0.00 4.35
690 784 0.179127 TTCAGAGGATTGAGCGAGCG 60.179 55.000 0.00 0.00 0.00 5.03
703 797 5.697178 CAGAGGATAGATGCAATGTTCAGAG 59.303 44.000 0.00 0.00 0.00 3.35
704 798 5.364735 TCAGAGGATAGATGCAATGTTCAGA 59.635 40.000 0.00 0.00 0.00 3.27
705 799 5.608449 TCAGAGGATAGATGCAATGTTCAG 58.392 41.667 0.00 0.00 0.00 3.02
708 802 9.011095 CAATATTCAGAGGATAGATGCAATGTT 57.989 33.333 0.00 0.00 0.00 2.71
709 803 7.120873 GCAATATTCAGAGGATAGATGCAATGT 59.879 37.037 0.00 0.00 0.00 2.71
711 805 6.315642 CGCAATATTCAGAGGATAGATGCAAT 59.684 38.462 0.00 0.00 0.00 3.56
712 806 5.640783 CGCAATATTCAGAGGATAGATGCAA 59.359 40.000 0.00 0.00 0.00 4.08
714 808 5.414360 TCGCAATATTCAGAGGATAGATGC 58.586 41.667 0.00 0.00 0.00 3.91
736 954 4.142988 TGCGAGGTTACGAATGTCAATTTC 60.143 41.667 0.00 0.00 35.09 2.17
737 955 3.749088 TGCGAGGTTACGAATGTCAATTT 59.251 39.130 0.00 0.00 35.09 1.82
738 956 3.331150 TGCGAGGTTACGAATGTCAATT 58.669 40.909 0.00 0.00 35.09 2.32
739 957 2.967362 TGCGAGGTTACGAATGTCAAT 58.033 42.857 0.00 0.00 35.09 2.57
751 969 3.055094 AGTGGATAACTGAATGCGAGGTT 60.055 43.478 0.00 0.00 37.88 3.50
783 1001 7.079451 AGAGGTTTGAGAAAACTTATCCAGA 57.921 36.000 1.76 0.00 38.87 3.86
799 1019 1.590238 CAGCGAGCGAATAGAGGTTTG 59.410 52.381 0.00 0.00 0.00 2.93
815 1035 3.187227 ACTCTGAGTAAATGTTTGCAGCG 59.813 43.478 8.91 0.00 0.00 5.18
816 1036 4.453819 AGACTCTGAGTAAATGTTTGCAGC 59.546 41.667 10.86 0.00 0.00 5.25
817 1037 5.931146 AGAGACTCTGAGTAAATGTTTGCAG 59.069 40.000 10.86 0.00 0.00 4.41
818 1038 5.858381 AGAGACTCTGAGTAAATGTTTGCA 58.142 37.500 10.86 0.00 0.00 4.08
832 1052 3.006752 AGGAACAAGCTTCAGAGACTCTG 59.993 47.826 24.13 24.13 45.59 3.35
834 1054 3.244044 ACAGGAACAAGCTTCAGAGACTC 60.244 47.826 0.00 0.00 0.00 3.36
835 1055 2.703007 ACAGGAACAAGCTTCAGAGACT 59.297 45.455 0.00 0.00 0.00 3.24
836 1056 2.805099 CACAGGAACAAGCTTCAGAGAC 59.195 50.000 0.00 0.00 0.00 3.36
837 1057 2.435805 ACACAGGAACAAGCTTCAGAGA 59.564 45.455 0.00 0.00 0.00 3.10
882 1106 9.543783 TTGTATATACAAACCAAAACCAAAACC 57.456 29.630 23.00 0.00 42.66 3.27
884 1108 9.262358 GCTTGTATATACAAACCAAAACCAAAA 57.738 29.630 24.65 2.61 44.67 2.44
885 1109 8.421784 TGCTTGTATATACAAACCAAAACCAAA 58.578 29.630 24.65 3.55 44.67 3.28
886 1110 7.952671 TGCTTGTATATACAAACCAAAACCAA 58.047 30.769 24.65 4.15 44.67 3.67
887 1111 7.309499 CCTGCTTGTATATACAAACCAAAACCA 60.309 37.037 24.65 12.54 44.67 3.67
908 1132 2.893489 CCAGAAAGGTTAAAAGCCTGCT 59.107 45.455 0.00 0.00 36.30 4.24
928 1160 0.806102 TTATGCAAGTCTCGCTCGCC 60.806 55.000 0.00 0.00 0.00 5.54
979 1215 5.932303 CCATCTCGTACCTGAAAAGAAAAGA 59.068 40.000 0.00 0.00 0.00 2.52
980 1216 5.390991 GCCATCTCGTACCTGAAAAGAAAAG 60.391 44.000 0.00 0.00 0.00 2.27
981 1217 4.454504 GCCATCTCGTACCTGAAAAGAAAA 59.545 41.667 0.00 0.00 0.00 2.29
982 1218 4.000988 GCCATCTCGTACCTGAAAAGAAA 58.999 43.478 0.00 0.00 0.00 2.52
983 1219 3.260884 AGCCATCTCGTACCTGAAAAGAA 59.739 43.478 0.00 0.00 0.00 2.52
1248 1522 2.444624 CGTTGCGATGGTCTGGTCG 61.445 63.158 0.00 0.00 40.62 4.79
1375 1649 0.689745 CCGGAGACACCCATCCCTAA 60.690 60.000 0.00 0.00 34.64 2.69
1377 1651 2.365635 CCGGAGACACCCATCCCT 60.366 66.667 0.00 0.00 34.64 4.20
1923 2299 2.973899 CCGCTGCTGTAGTCACCT 59.026 61.111 0.00 0.00 0.00 4.00
1959 2335 0.103755 TCACATCCTCGATGAGCTGC 59.896 55.000 8.57 0.00 42.09 5.25
2047 2423 2.597903 GCCCCATCCCTTCTCCAC 59.402 66.667 0.00 0.00 0.00 4.02
2048 2424 2.696125 GGCCCCATCCCTTCTCCA 60.696 66.667 0.00 0.00 0.00 3.86
2093 2469 3.721370 ATGATGCACCCGCCCTTCC 62.721 63.158 0.00 0.00 37.32 3.46
2286 2667 0.608640 ACGAGTCAAAGTAGGCCAGG 59.391 55.000 5.01 0.00 0.00 4.45
2337 2718 1.149401 GTAATCCCTCTGGGCCTGC 59.851 63.158 4.53 0.00 43.94 4.85
2471 2853 2.047179 TCTCAGCAGCAGCAGCAG 60.047 61.111 12.92 3.97 45.49 4.24
2472 2854 2.047179 CTCTCAGCAGCAGCAGCA 60.047 61.111 12.92 0.00 45.49 4.41
2473 2855 2.101835 GTCTCTCAGCAGCAGCAGC 61.102 63.158 3.17 0.46 45.49 5.25
2474 2856 1.806351 CGTCTCTCAGCAGCAGCAG 60.806 63.158 3.17 0.00 45.49 4.24
2475 2857 2.260743 CGTCTCTCAGCAGCAGCA 59.739 61.111 3.17 0.00 45.49 4.41
2476 2858 2.508887 CCGTCTCTCAGCAGCAGC 60.509 66.667 0.00 0.00 42.56 5.25
2477 2859 2.508887 GCCGTCTCTCAGCAGCAG 60.509 66.667 0.00 0.00 0.00 4.24
2478 2860 4.074526 GGCCGTCTCTCAGCAGCA 62.075 66.667 0.00 0.00 0.00 4.41
2479 2861 4.828925 GGGCCGTCTCTCAGCAGC 62.829 72.222 0.00 0.00 0.00 5.25
2480 2862 2.641439 GATGGGCCGTCTCTCAGCAG 62.641 65.000 18.69 0.00 0.00 4.24
2481 2863 2.685017 ATGGGCCGTCTCTCAGCA 60.685 61.111 0.00 0.00 0.00 4.41
2494 2881 2.076863 GACAAGACGAAACCTGATGGG 58.923 52.381 0.00 0.00 41.89 4.00
2538 2925 2.913617 CTCCCCTACAGGAAAAAGGACT 59.086 50.000 0.00 0.00 38.24 3.85
2539 2926 2.026169 CCTCCCCTACAGGAAAAAGGAC 60.026 54.545 0.00 0.00 38.24 3.85
2540 2927 2.157911 TCCTCCCCTACAGGAAAAAGGA 60.158 50.000 0.00 0.96 37.09 3.36
2541 2928 2.275466 TCCTCCCCTACAGGAAAAAGG 58.725 52.381 0.00 0.00 37.09 3.11
2567 2962 8.173130 ACTCGAGTAATAAAAATTAAACGGCAG 58.827 33.333 18.46 0.00 0.00 4.85
2636 3031 1.115467 AGTGGAGAGAATACCGGCTG 58.885 55.000 0.00 0.00 0.00 4.85
2641 3036 5.364157 ACATGGAACTAGTGGAGAGAATACC 59.636 44.000 0.00 0.00 0.00 2.73
2657 3055 4.019174 AGGGTTGATCAATCACATGGAAC 58.981 43.478 20.07 0.47 36.36 3.62
2733 3131 9.906660 TGAAAACGTATTTTATTTCTTCATGCT 57.093 25.926 8.99 0.00 38.17 3.79
2741 3139 8.372521 CAGGCATGTGAAAACGTATTTTATTTC 58.627 33.333 0.00 0.00 38.17 2.17
2742 3140 7.148656 GCAGGCATGTGAAAACGTATTTTATTT 60.149 33.333 0.00 0.00 38.17 1.40
2743 3141 6.310224 GCAGGCATGTGAAAACGTATTTTATT 59.690 34.615 0.00 0.00 38.17 1.40
2744 3142 5.804979 GCAGGCATGTGAAAACGTATTTTAT 59.195 36.000 0.00 0.00 38.17 1.40
2746 3144 3.987220 GCAGGCATGTGAAAACGTATTTT 59.013 39.130 0.00 0.00 40.83 1.82
2747 3145 3.574614 GCAGGCATGTGAAAACGTATTT 58.425 40.909 0.00 0.00 0.00 1.40
2748 3146 2.094752 GGCAGGCATGTGAAAACGTATT 60.095 45.455 0.00 0.00 0.00 1.89
2749 3147 1.472480 GGCAGGCATGTGAAAACGTAT 59.528 47.619 0.00 0.00 0.00 3.06
2750 3148 0.878416 GGCAGGCATGTGAAAACGTA 59.122 50.000 0.00 0.00 0.00 3.57
2751 3149 0.823356 AGGCAGGCATGTGAAAACGT 60.823 50.000 0.00 0.00 0.00 3.99
2752 3150 0.387622 CAGGCAGGCATGTGAAAACG 60.388 55.000 0.00 0.00 0.00 3.60
2753 3151 0.675633 ACAGGCAGGCATGTGAAAAC 59.324 50.000 11.07 0.00 39.60 2.43
2754 3152 3.130264 ACAGGCAGGCATGTGAAAA 57.870 47.368 11.07 0.00 39.60 2.29
2755 3153 4.927557 ACAGGCAGGCATGTGAAA 57.072 50.000 11.07 0.00 39.60 2.69
2759 3157 1.181098 GGAAACACAGGCAGGCATGT 61.181 55.000 5.65 5.65 41.93 3.21
2760 3158 1.180456 TGGAAACACAGGCAGGCATG 61.180 55.000 4.16 4.16 33.40 4.06
2761 3159 1.153524 TGGAAACACAGGCAGGCAT 59.846 52.632 0.00 0.00 33.40 4.40
2762 3160 2.600164 TGGAAACACAGGCAGGCA 59.400 55.556 0.00 0.00 33.40 4.75
2772 3170 3.181434 ACCAGGAAGCATAAGTGGAAACA 60.181 43.478 0.00 0.00 38.70 2.83
2773 3171 3.421844 ACCAGGAAGCATAAGTGGAAAC 58.578 45.455 0.00 0.00 32.26 2.78
2774 3172 3.330701 AGACCAGGAAGCATAAGTGGAAA 59.669 43.478 0.00 0.00 32.26 3.13
2828 3252 1.535649 CGGCACAACAAACAGAATGCA 60.536 47.619 0.00 0.00 42.53 3.96
2833 3257 3.407698 ACATATCGGCACAACAAACAGA 58.592 40.909 0.00 0.00 0.00 3.41
2834 3258 3.426159 GGACATATCGGCACAACAAACAG 60.426 47.826 0.00 0.00 0.00 3.16
2835 3259 2.486203 GGACATATCGGCACAACAAACA 59.514 45.455 0.00 0.00 0.00 2.83
2836 3260 2.475519 CGGACATATCGGCACAACAAAC 60.476 50.000 0.00 0.00 0.00 2.93
2848 3272 6.148811 TCTCTTCCAAACAAAACGGACATATC 59.851 38.462 0.00 0.00 0.00 1.63
2852 3276 3.611970 TCTCTTCCAAACAAAACGGACA 58.388 40.909 0.00 0.00 0.00 4.02
2853 3277 4.598062 CTTCTCTTCCAAACAAAACGGAC 58.402 43.478 0.00 0.00 0.00 4.79
2912 3337 8.585471 AATGAATGATCCAGTAACAAGAACAT 57.415 30.769 0.00 0.00 0.00 2.71
2917 3342 7.912250 GCTGTAAATGAATGATCCAGTAACAAG 59.088 37.037 0.00 0.00 0.00 3.16
2920 3345 7.320443 TGCTGTAAATGAATGATCCAGTAAC 57.680 36.000 0.00 0.00 0.00 2.50
2921 3346 6.038603 GCTGCTGTAAATGAATGATCCAGTAA 59.961 38.462 0.00 0.00 0.00 2.24
2923 3348 4.337555 GCTGCTGTAAATGAATGATCCAGT 59.662 41.667 0.00 0.00 0.00 4.00
2924 3349 4.337274 TGCTGCTGTAAATGAATGATCCAG 59.663 41.667 0.00 0.00 0.00 3.86
2925 3350 4.096833 GTGCTGCTGTAAATGAATGATCCA 59.903 41.667 0.00 0.00 0.00 3.41
2926 3351 4.498682 GGTGCTGCTGTAAATGAATGATCC 60.499 45.833 0.00 0.00 0.00 3.36
2927 3352 4.096833 TGGTGCTGCTGTAAATGAATGATC 59.903 41.667 0.00 0.00 0.00 2.92
2928 3353 4.018490 TGGTGCTGCTGTAAATGAATGAT 58.982 39.130 0.00 0.00 0.00 2.45
2929 3354 3.419943 TGGTGCTGCTGTAAATGAATGA 58.580 40.909 0.00 0.00 0.00 2.57
2930 3355 3.441222 TCTGGTGCTGCTGTAAATGAATG 59.559 43.478 0.00 0.00 0.00 2.67
2931 3356 3.441572 GTCTGGTGCTGCTGTAAATGAAT 59.558 43.478 0.00 0.00 0.00 2.57
2932 3357 2.813754 GTCTGGTGCTGCTGTAAATGAA 59.186 45.455 0.00 0.00 0.00 2.57
2957 3382 5.713025 ACATCAAGTATGCAACACAAATCC 58.287 37.500 0.00 0.00 39.39 3.01
3021 3450 4.679197 CACGGATACACAAACACAAAATGG 59.321 41.667 0.00 0.00 0.00 3.16
3022 3451 5.277825 ACACGGATACACAAACACAAAATG 58.722 37.500 0.00 0.00 0.00 2.32
3023 3452 5.508200 ACACGGATACACAAACACAAAAT 57.492 34.783 0.00 0.00 0.00 1.82
3024 3453 4.966965 ACACGGATACACAAACACAAAA 57.033 36.364 0.00 0.00 0.00 2.44
3025 3454 5.049336 CCATACACGGATACACAAACACAAA 60.049 40.000 0.00 0.00 0.00 2.83
3026 3455 4.452795 CCATACACGGATACACAAACACAA 59.547 41.667 0.00 0.00 0.00 3.33
3032 3483 1.834896 AGCCCATACACGGATACACAA 59.165 47.619 0.00 0.00 0.00 3.33
3056 3507 8.630278 TTCTGTCGCAGAAATTATACTACTTC 57.370 34.615 16.49 0.00 45.84 3.01
3137 3941 2.561858 ACTTGTACTCGTTTCTCCCTCC 59.438 50.000 0.00 0.00 0.00 4.30
3167 3971 4.354587 CTCTGTTTTGCTTTCTTTTCGCT 58.645 39.130 0.00 0.00 0.00 4.93
3176 3980 3.066760 CGTTTCCTCCTCTGTTTTGCTTT 59.933 43.478 0.00 0.00 0.00 3.51
3219 4023 2.093973 GCTGCTGCTTGTTCCTACTCTA 60.094 50.000 8.53 0.00 36.03 2.43
3220 4024 1.338579 GCTGCTGCTTGTTCCTACTCT 60.339 52.381 8.53 0.00 36.03 3.24
3221 4025 1.082690 GCTGCTGCTTGTTCCTACTC 58.917 55.000 8.53 0.00 36.03 2.59
3222 4026 0.671781 CGCTGCTGCTTGTTCCTACT 60.672 55.000 14.03 0.00 36.97 2.57
3223 4027 1.790387 CGCTGCTGCTTGTTCCTAC 59.210 57.895 14.03 0.00 36.97 3.18
3238 4042 2.434534 CTTGCTCTCTGCTGCGCT 60.435 61.111 9.73 0.00 43.37 5.92
3241 4045 1.363145 CTGAGCTTGCTCTCTGCTGC 61.363 60.000 21.17 0.00 43.37 5.25
3242 4046 2.757212 CTGAGCTTGCTCTCTGCTG 58.243 57.895 21.17 3.90 43.37 4.41
3244 4048 3.488573 GCTGAGCTTGCTCTCTGC 58.511 61.111 21.17 17.74 45.85 4.26
3245 4049 0.741574 CAGGCTGAGCTTGCTCTCTG 60.742 60.000 21.17 19.42 35.81 3.35
3246 4050 1.597989 CAGGCTGAGCTTGCTCTCT 59.402 57.895 21.17 13.61 34.29 3.10
3247 4051 1.449956 CCAGGCTGAGCTTGCTCTC 60.450 63.158 17.94 13.43 34.24 3.20
3248 4052 2.669849 CCAGGCTGAGCTTGCTCT 59.330 61.111 17.94 0.00 34.24 4.09
3249 4053 2.438075 CCCAGGCTGAGCTTGCTC 60.438 66.667 17.94 15.01 34.24 4.26
3255 4059 1.968540 GTGTTGACCCAGGCTGAGC 60.969 63.158 17.94 0.00 0.00 4.26
3276 4080 1.536766 TGAAAGAACTTGCGGATGCTG 59.463 47.619 0.00 0.00 43.34 4.41
3290 4094 1.421268 TCCTTGCTTGGAGCTGAAAGA 59.579 47.619 8.79 0.00 42.97 2.52
3291 4095 1.538950 GTCCTTGCTTGGAGCTGAAAG 59.461 52.381 0.00 0.00 42.97 2.62
3292 4096 1.143684 AGTCCTTGCTTGGAGCTGAAA 59.856 47.619 0.00 0.00 42.97 2.69
3293 4097 0.767375 AGTCCTTGCTTGGAGCTGAA 59.233 50.000 0.00 0.00 42.97 3.02
3307 4111 5.644188 TCCTGGAAATTCATTTTCAGTCCT 58.356 37.500 16.27 0.00 47.00 3.85
3309 4113 6.581171 ACTCCTGGAAATTCATTTTCAGTC 57.419 37.500 16.27 0.00 47.00 3.51
3341 4145 4.041723 CGTGGCGAAAGAAGTTGATTTTT 58.958 39.130 0.00 0.00 0.00 1.94
3342 4146 3.314080 TCGTGGCGAAAGAAGTTGATTTT 59.686 39.130 0.00 0.00 31.06 1.82
3343 4147 2.875933 TCGTGGCGAAAGAAGTTGATTT 59.124 40.909 0.00 0.00 31.06 2.17
3344 4148 2.480419 CTCGTGGCGAAAGAAGTTGATT 59.520 45.455 0.00 0.00 34.74 2.57
3345 4149 2.069273 CTCGTGGCGAAAGAAGTTGAT 58.931 47.619 0.00 0.00 34.74 2.57
3346 4150 1.497991 CTCGTGGCGAAAGAAGTTGA 58.502 50.000 0.00 0.00 34.74 3.18
3347 4151 0.110644 GCTCGTGGCGAAAGAAGTTG 60.111 55.000 0.00 0.00 34.74 3.16
3348 4152 0.531974 TGCTCGTGGCGAAAGAAGTT 60.532 50.000 0.00 0.00 45.43 2.66
3349 4153 0.946221 CTGCTCGTGGCGAAAGAAGT 60.946 55.000 0.00 0.00 45.43 3.01
3350 4154 0.667487 TCTGCTCGTGGCGAAAGAAG 60.667 55.000 0.00 0.00 45.43 2.85
3351 4155 0.037326 ATCTGCTCGTGGCGAAAGAA 60.037 50.000 7.39 0.00 45.43 2.52
3352 4156 0.458543 GATCTGCTCGTGGCGAAAGA 60.459 55.000 6.20 6.20 45.43 2.52
3353 4157 0.737367 TGATCTGCTCGTGGCGAAAG 60.737 55.000 0.00 0.00 45.43 2.62
3354 4158 0.320334 TTGATCTGCTCGTGGCGAAA 60.320 50.000 0.00 0.00 45.43 3.46
3355 4159 0.108186 ATTGATCTGCTCGTGGCGAA 60.108 50.000 0.00 0.00 45.43 4.70
3356 4160 0.528466 GATTGATCTGCTCGTGGCGA 60.528 55.000 0.00 0.00 45.43 5.54
3357 4161 0.807275 TGATTGATCTGCTCGTGGCG 60.807 55.000 0.00 0.00 45.43 5.69
3358 4162 1.530293 GATGATTGATCTGCTCGTGGC 59.470 52.381 0.00 0.00 42.22 5.01
3359 4163 2.830104 TGATGATTGATCTGCTCGTGG 58.170 47.619 0.00 0.00 31.55 4.94
3360 4164 3.869832 AGTTGATGATTGATCTGCTCGTG 59.130 43.478 0.00 0.00 31.55 4.35
3361 4165 4.134379 AGTTGATGATTGATCTGCTCGT 57.866 40.909 0.00 0.00 31.55 4.18
3362 4166 5.288015 ACTAGTTGATGATTGATCTGCTCG 58.712 41.667 0.00 0.00 31.55 5.03
3363 4167 8.654230 TTTACTAGTTGATGATTGATCTGCTC 57.346 34.615 0.00 0.00 31.55 4.26
3364 4168 8.887717 GTTTTACTAGTTGATGATTGATCTGCT 58.112 33.333 0.00 0.00 31.55 4.24
3365 4169 7.848051 CGTTTTACTAGTTGATGATTGATCTGC 59.152 37.037 0.00 0.00 31.55 4.26
3366 4170 7.848051 GCGTTTTACTAGTTGATGATTGATCTG 59.152 37.037 0.00 0.00 31.55 2.90
3367 4171 7.766278 AGCGTTTTACTAGTTGATGATTGATCT 59.234 33.333 0.00 0.00 31.55 2.75
3368 4172 7.910304 AGCGTTTTACTAGTTGATGATTGATC 58.090 34.615 0.00 0.00 0.00 2.92
3369 4173 7.549134 TGAGCGTTTTACTAGTTGATGATTGAT 59.451 33.333 0.00 0.00 0.00 2.57
3370 4174 6.871492 TGAGCGTTTTACTAGTTGATGATTGA 59.129 34.615 0.00 0.00 0.00 2.57
3371 4175 7.060600 TGAGCGTTTTACTAGTTGATGATTG 57.939 36.000 0.00 0.00 0.00 2.67
3372 4176 7.849804 ATGAGCGTTTTACTAGTTGATGATT 57.150 32.000 0.00 0.00 0.00 2.57
3373 4177 7.849804 AATGAGCGTTTTACTAGTTGATGAT 57.150 32.000 0.00 0.00 0.00 2.45
3374 4178 7.667043 AAATGAGCGTTTTACTAGTTGATGA 57.333 32.000 0.00 0.00 0.00 2.92
3375 4179 8.015087 TGAAAATGAGCGTTTTACTAGTTGATG 58.985 33.333 0.00 0.00 31.80 3.07
3376 4180 8.094798 TGAAAATGAGCGTTTTACTAGTTGAT 57.905 30.769 0.00 0.00 31.80 2.57
3377 4181 7.485418 TGAAAATGAGCGTTTTACTAGTTGA 57.515 32.000 0.00 0.00 31.80 3.18
3378 4182 8.555166 TTTGAAAATGAGCGTTTTACTAGTTG 57.445 30.769 0.00 0.00 31.80 3.16
3379 4183 9.180678 CATTTGAAAATGAGCGTTTTACTAGTT 57.819 29.630 9.69 0.00 46.72 2.24
3380 4184 7.326063 GCATTTGAAAATGAGCGTTTTACTAGT 59.674 33.333 17.78 0.00 46.72 2.57
3381 4185 7.460120 CGCATTTGAAAATGAGCGTTTTACTAG 60.460 37.037 17.78 0.00 46.72 2.57
3382 4186 6.304445 CGCATTTGAAAATGAGCGTTTTACTA 59.696 34.615 17.78 0.00 46.72 1.82
3383 4187 5.116983 CGCATTTGAAAATGAGCGTTTTACT 59.883 36.000 17.78 0.00 46.72 2.24
3384 4188 5.116377 TCGCATTTGAAAATGAGCGTTTTAC 59.884 36.000 17.78 0.00 46.72 2.01
3385 4189 5.215903 TCGCATTTGAAAATGAGCGTTTTA 58.784 33.333 17.78 0.00 46.72 1.52
3386 4190 4.047822 TCGCATTTGAAAATGAGCGTTTT 58.952 34.783 17.78 0.34 46.72 2.43
3387 4191 3.637432 TCGCATTTGAAAATGAGCGTTT 58.363 36.364 17.78 0.00 46.72 3.60
3388 4192 3.236816 CTCGCATTTGAAAATGAGCGTT 58.763 40.909 17.78 0.00 46.72 4.84
3389 4193 2.226437 ACTCGCATTTGAAAATGAGCGT 59.774 40.909 17.78 13.00 46.72 5.07
3390 4194 2.855180 ACTCGCATTTGAAAATGAGCG 58.145 42.857 17.78 14.62 46.72 5.03
3391 4195 5.572211 TGATACTCGCATTTGAAAATGAGC 58.428 37.500 17.78 4.40 46.72 4.26
3392 4196 7.377928 GGAATGATACTCGCATTTGAAAATGAG 59.622 37.037 17.78 14.72 46.72 2.90
3393 4197 7.148103 TGGAATGATACTCGCATTTGAAAATGA 60.148 33.333 17.78 0.00 46.72 2.57
3394 4198 6.974048 TGGAATGATACTCGCATTTGAAAATG 59.026 34.615 10.74 10.74 46.55 2.32
3395 4199 7.067372 TCTGGAATGATACTCGCATTTGAAAAT 59.933 33.333 0.00 0.00 36.19 1.82
3396 4200 6.374053 TCTGGAATGATACTCGCATTTGAAAA 59.626 34.615 0.00 0.00 36.19 2.29
3397 4201 5.879777 TCTGGAATGATACTCGCATTTGAAA 59.120 36.000 0.00 0.00 36.19 2.69
3398 4202 5.427378 TCTGGAATGATACTCGCATTTGAA 58.573 37.500 0.00 0.00 36.19 2.69
3399 4203 5.022282 TCTGGAATGATACTCGCATTTGA 57.978 39.130 0.00 0.00 36.19 2.69
3400 4204 5.106791 GGATCTGGAATGATACTCGCATTTG 60.107 44.000 0.00 0.00 36.19 2.32
3401 4205 4.999950 GGATCTGGAATGATACTCGCATTT 59.000 41.667 0.00 0.00 36.19 2.32
3402 4206 4.040829 TGGATCTGGAATGATACTCGCATT 59.959 41.667 0.00 0.00 38.58 3.56
3403 4207 3.580022 TGGATCTGGAATGATACTCGCAT 59.420 43.478 0.00 0.00 0.00 4.73
3404 4208 2.965147 TGGATCTGGAATGATACTCGCA 59.035 45.455 0.00 0.00 0.00 5.10
3405 4209 3.667497 TGGATCTGGAATGATACTCGC 57.333 47.619 0.00 0.00 0.00 5.03
3406 4210 5.655488 GGTATGGATCTGGAATGATACTCG 58.345 45.833 0.00 0.00 0.00 4.18
3407 4211 5.394663 CCGGTATGGATCTGGAATGATACTC 60.395 48.000 0.00 0.00 42.00 2.59
3408 4212 4.467795 CCGGTATGGATCTGGAATGATACT 59.532 45.833 0.00 0.00 42.00 2.12
3409 4213 4.466370 TCCGGTATGGATCTGGAATGATAC 59.534 45.833 0.00 0.00 43.74 2.24
3410 4214 4.683643 TCCGGTATGGATCTGGAATGATA 58.316 43.478 0.00 0.00 43.74 2.15
3411 4215 3.520696 TCCGGTATGGATCTGGAATGAT 58.479 45.455 0.00 0.00 43.74 2.45
3412 4216 2.970987 TCCGGTATGGATCTGGAATGA 58.029 47.619 0.00 0.00 43.74 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.