Multiple sequence alignment - TraesCS3B01G565000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G565000 chr3B 100.000 5153 0 0 1 5153 798105505 798110657 0.000000e+00 9516.0
1 TraesCS3B01G565000 chr3B 92.097 2227 122 28 2125 4313 797223765 797221555 0.000000e+00 3088.0
2 TraesCS3B01G565000 chr3B 83.975 1897 250 38 2460 4330 798123269 798125137 0.000000e+00 1770.0
3 TraesCS3B01G565000 chr3B 94.013 952 30 2 1030 1980 797224759 797223834 0.000000e+00 1417.0
4 TraesCS3B01G565000 chr3B 83.884 1452 190 27 2146 3585 797639198 797640617 0.000000e+00 1345.0
5 TraesCS3B01G565000 chr3B 82.900 1076 119 22 1424 2456 798122179 798123232 0.000000e+00 907.0
6 TraesCS3B01G565000 chr3B 85.816 564 75 3 2 564 712557398 712557957 1.240000e-165 593.0
7 TraesCS3B01G565000 chr3B 88.557 402 39 2 4430 4824 372190324 372190725 1.000000e-131 481.0
8 TraesCS3B01G565000 chr3B 79.787 470 62 20 745 1204 798121603 798122049 1.390000e-80 311.0
9 TraesCS3B01G565000 chr3B 86.235 247 34 0 943 1189 798090652 798090898 8.500000e-68 268.0
10 TraesCS3B01G565000 chr3B 97.647 85 2 0 1195 1279 797224645 797224561 4.160000e-31 147.0
11 TraesCS3B01G565000 chr3B 97.059 34 1 0 5068 5101 798109841 798109874 2.000000e-04 58.4
12 TraesCS3B01G565000 chr3B 97.059 34 1 0 4337 4370 798110572 798110605 2.000000e-04 58.4
13 TraesCS3B01G565000 chr3D 91.873 2338 135 29 2125 4413 594495526 594497857 0.000000e+00 3214.0
14 TraesCS3B01G565000 chr3D 91.577 2220 121 28 2125 4303 594182756 594180562 0.000000e+00 3003.0
15 TraesCS3B01G565000 chr3D 95.112 1882 57 12 2443 4313 594363575 594365432 0.000000e+00 2933.0
16 TraesCS3B01G565000 chr3D 94.644 1139 52 8 924 2054 594494374 594495511 0.000000e+00 1757.0
17 TraesCS3B01G565000 chr3D 92.038 1256 86 9 1195 2445 594362235 594363481 0.000000e+00 1753.0
18 TraesCS3B01G565000 chr3D 97.096 861 24 1 1195 2054 594183631 594182771 0.000000e+00 1450.0
19 TraesCS3B01G565000 chr3D 82.036 1336 195 27 3013 4330 594077812 594076504 0.000000e+00 1096.0
20 TraesCS3B01G565000 chr3D 84.039 614 90 7 2 613 73455292 73455899 7.440000e-163 584.0
21 TraesCS3B01G565000 chr3D 94.118 153 9 0 1195 1347 594053635 594053483 3.100000e-57 233.0
22 TraesCS3B01G565000 chr3D 92.683 82 5 1 5056 5136 594497843 594497924 3.260000e-22 117.0
23 TraesCS3B01G565000 chr3D 85.000 80 7 4 4330 4407 594497811 594497887 5.530000e-10 76.8
24 TraesCS3B01G565000 chr3D 94.872 39 2 0 5060 5098 10709317 10709279 1.550000e-05 62.1
25 TraesCS3B01G565000 chr3D 100.000 28 0 0 5076 5103 594497802 594497829 9.000000e-03 52.8
26 TraesCS3B01G565000 chr3A 94.286 1610 84 7 2463 4068 725099938 725101543 0.000000e+00 2457.0
27 TraesCS3B01G565000 chr3A 83.795 1660 232 26 2689 4330 725119765 725121405 0.000000e+00 1541.0
28 TraesCS3B01G565000 chr3A 91.522 1038 78 5 1607 2634 725098817 725099854 0.000000e+00 1421.0
29 TraesCS3B01G565000 chr3A 96.283 861 31 1 1195 2054 724947541 724948401 0.000000e+00 1411.0
30 TraesCS3B01G565000 chr3A 84.187 1132 147 18 2460 3585 724896217 724897322 0.000000e+00 1070.0
31 TraesCS3B01G565000 chr3A 90.530 623 49 8 924 1539 725097977 725098596 0.000000e+00 815.0
32 TraesCS3B01G565000 chr3A 84.507 710 79 13 2125 2803 724948416 724949125 0.000000e+00 673.0
33 TraesCS3B01G565000 chr3A 84.173 695 77 15 1417 2081 725167129 725167820 1.210000e-180 643.0
34 TraesCS3B01G565000 chr3A 84.088 685 74 14 1424 2081 725119028 725119704 3.390000e-176 628.0
35 TraesCS3B01G565000 chr3A 85.072 623 69 11 1195 1796 724797948 724797329 9.480000e-172 614.0
36 TraesCS3B01G565000 chr3A 97.358 265 6 1 2182 2445 724949132 724949396 2.830000e-122 449.0
37 TraesCS3B01G565000 chr3A 92.905 296 20 1 4095 4389 725102084 725102379 3.690000e-116 429.0
38 TraesCS3B01G565000 chr3A 88.179 313 34 3 2146 2456 724895869 724896180 2.270000e-98 370.0
39 TraesCS3B01G565000 chr3A 81.779 461 66 13 745 1204 725166563 725167006 2.270000e-98 370.0
40 TraesCS3B01G565000 chr3A 81.779 461 66 13 745 1204 725181593 725182036 2.270000e-98 370.0
41 TraesCS3B01G565000 chr3A 96.124 129 5 0 4261 4389 725088295 725088423 1.450000e-50 211.0
42 TraesCS3B01G565000 chr3A 89.542 153 5 1 4237 4389 725149367 725149508 3.170000e-42 183.0
43 TraesCS3B01G565000 chr3A 91.753 97 7 1 5056 5151 725102376 725102472 3.240000e-27 134.0
44 TraesCS3B01G565000 chr3A 93.902 82 4 1 5056 5136 725149505 725149586 7.010000e-24 122.0
45 TraesCS3B01G565000 chr3A 94.030 67 4 0 5056 5122 725088420 725088486 9.130000e-18 102.0
46 TraesCS3B01G565000 chr3A 100.000 34 0 0 4337 4370 725088432 725088465 4.310000e-06 63.9
47 TraesCS3B01G565000 chr3A 100.000 34 0 0 4337 4370 725102388 725102421 4.310000e-06 63.9
48 TraesCS3B01G565000 chr3A 97.059 34 1 0 4337 4370 725149517 725149550 2.000000e-04 58.4
49 TraesCS3B01G565000 chr7A 82.421 1900 275 36 2460 4330 92362701 92360832 0.000000e+00 1604.0
50 TraesCS3B01G565000 chr7A 83.721 1075 124 19 1424 2459 92363797 92362735 0.000000e+00 968.0
51 TraesCS3B01G565000 chr7A 86.583 641 69 9 4428 5058 562174029 562174662 0.000000e+00 691.0
52 TraesCS3B01G565000 chr7A 88.452 407 36 8 4428 4824 6799044 6799449 1.000000e-131 481.0
53 TraesCS3B01G565000 chr7A 88.793 232 26 0 4826 5057 6799481 6799712 8.440000e-73 285.0
54 TraesCS3B01G565000 chr7A 78.085 470 72 19 745 1204 92364378 92363930 8.500000e-68 268.0
55 TraesCS3B01G565000 chrUn 83.183 1552 221 28 2689 4218 33329833 33331366 0.000000e+00 1384.0
56 TraesCS3B01G565000 chrUn 84.460 695 75 15 1417 2081 33329081 33329772 0.000000e+00 654.0
57 TraesCS3B01G565000 chrUn 81.779 461 66 13 745 1204 33328515 33328958 2.270000e-98 370.0
58 TraesCS3B01G565000 chr2D 84.853 614 84 6 2 608 536984558 536985169 1.230000e-170 610.0
59 TraesCS3B01G565000 chr7B 84.868 608 87 3 2 608 316143212 316143815 4.410000e-170 608.0
60 TraesCS3B01G565000 chr7B 83.306 611 96 6 2 608 707076340 707075732 4.510000e-155 558.0
61 TraesCS3B01G565000 chr4B 84.385 602 90 4 2 601 496552204 496551605 5.750000e-164 588.0
62 TraesCS3B01G565000 chr4B 89.055 402 39 3 4428 4824 526721330 526721731 1.290000e-135 494.0
63 TraesCS3B01G565000 chr4B 95.000 60 3 0 5060 5119 450908180 450908239 1.530000e-15 95.3
64 TraesCS3B01G565000 chr1D 84.843 574 80 6 31 600 73967377 73966807 5.790000e-159 571.0
65 TraesCS3B01G565000 chr1D 88.670 406 34 5 4429 4824 469610802 469610399 7.760000e-133 484.0
66 TraesCS3B01G565000 chr1D 89.474 228 23 1 4830 5057 418405041 418404815 2.350000e-73 287.0
67 TraesCS3B01G565000 chr5D 83.860 601 93 3 2 601 484049867 484049270 2.080000e-158 569.0
68 TraesCS3B01G565000 chr5D 83.333 618 94 9 2 614 300705052 300705665 3.480000e-156 562.0
69 TraesCS3B01G565000 chr6D 88.918 388 36 6 4444 4824 334239117 334238730 6.040000e-129 472.0
70 TraesCS3B01G565000 chr6D 90.086 232 23 0 4826 5057 27033931 27034162 8.390000e-78 302.0
71 TraesCS3B01G565000 chr6D 89.610 231 24 0 4826 5056 382343964 382344194 1.400000e-75 294.0
72 TraesCS3B01G565000 chr7D 88.384 396 36 5 4437 4824 120304591 120304198 7.810000e-128 468.0
73 TraesCS3B01G565000 chr7D 89.224 232 24 1 4826 5057 127762241 127762471 6.530000e-74 289.0
74 TraesCS3B01G565000 chr6A 87.901 405 39 5 4430 4824 20177602 20177198 7.810000e-128 468.0
75 TraesCS3B01G565000 chr4D 88.325 394 38 7 4439 4824 502032373 502031980 2.810000e-127 466.0
76 TraesCS3B01G565000 chr4D 90.086 232 22 1 4826 5057 99207384 99207614 3.020000e-77 300.0
77 TraesCS3B01G565000 chr1B 87.715 407 40 4 4428 4824 47627868 47628274 2.810000e-127 466.0
78 TraesCS3B01G565000 chr2B 88.462 234 27 0 4825 5058 643187789 643187556 3.040000e-72 283.0
79 TraesCS3B01G565000 chr4A 87.149 249 27 3 4826 5073 511704991 511705235 1.410000e-70 278.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G565000 chr3B 798105505 798110657 5152 False 3210.933333 9516 98.039333 1 5153 3 chr3B.!!$F5 5152
1 TraesCS3B01G565000 chr3B 797221555 797224759 3204 True 1550.666667 3088 94.585667 1030 4313 3 chr3B.!!$R1 3283
2 TraesCS3B01G565000 chr3B 797639198 797640617 1419 False 1345.000000 1345 83.884000 2146 3585 1 chr3B.!!$F3 1439
3 TraesCS3B01G565000 chr3B 798121603 798125137 3534 False 996.000000 1770 82.220667 745 4330 3 chr3B.!!$F6 3585
4 TraesCS3B01G565000 chr3B 712557398 712557957 559 False 593.000000 593 85.816000 2 564 1 chr3B.!!$F2 562
5 TraesCS3B01G565000 chr3D 594362235 594365432 3197 False 2343.000000 2933 93.575000 1195 4313 2 chr3D.!!$F2 3118
6 TraesCS3B01G565000 chr3D 594180562 594183631 3069 True 2226.500000 3003 94.336500 1195 4303 2 chr3D.!!$R4 3108
7 TraesCS3B01G565000 chr3D 594076504 594077812 1308 True 1096.000000 1096 82.036000 3013 4330 1 chr3D.!!$R3 1317
8 TraesCS3B01G565000 chr3D 594494374 594497924 3550 False 1043.520000 3214 92.840000 924 5136 5 chr3D.!!$F3 4212
9 TraesCS3B01G565000 chr3D 73455292 73455899 607 False 584.000000 584 84.039000 2 613 1 chr3D.!!$F1 611
10 TraesCS3B01G565000 chr3A 725119028 725121405 2377 False 1084.500000 1541 83.941500 1424 4330 2 chr3A.!!$F6 2906
11 TraesCS3B01G565000 chr3A 725097977 725102472 4495 False 886.650000 2457 93.499333 924 5151 6 chr3A.!!$F5 4227
12 TraesCS3B01G565000 chr3A 724947541 724949396 1855 False 844.333333 1411 92.716000 1195 2803 3 chr3A.!!$F3 1608
13 TraesCS3B01G565000 chr3A 724895869 724897322 1453 False 720.000000 1070 86.183000 2146 3585 2 chr3A.!!$F2 1439
14 TraesCS3B01G565000 chr3A 724797329 724797948 619 True 614.000000 614 85.072000 1195 1796 1 chr3A.!!$R1 601
15 TraesCS3B01G565000 chr3A 725166563 725167820 1257 False 506.500000 643 82.976000 745 2081 2 chr3A.!!$F8 1336
16 TraesCS3B01G565000 chr7A 92360832 92364378 3546 True 946.666667 1604 81.409000 745 4330 3 chr7A.!!$R1 3585
17 TraesCS3B01G565000 chr7A 562174029 562174662 633 False 691.000000 691 86.583000 4428 5058 1 chr7A.!!$F1 630
18 TraesCS3B01G565000 chr7A 6799044 6799712 668 False 383.000000 481 88.622500 4428 5057 2 chr7A.!!$F2 629
19 TraesCS3B01G565000 chrUn 33328515 33331366 2851 False 802.666667 1384 83.140667 745 4218 3 chrUn.!!$F1 3473
20 TraesCS3B01G565000 chr2D 536984558 536985169 611 False 610.000000 610 84.853000 2 608 1 chr2D.!!$F1 606
21 TraesCS3B01G565000 chr7B 316143212 316143815 603 False 608.000000 608 84.868000 2 608 1 chr7B.!!$F1 606
22 TraesCS3B01G565000 chr7B 707075732 707076340 608 True 558.000000 558 83.306000 2 608 1 chr7B.!!$R1 606
23 TraesCS3B01G565000 chr4B 496551605 496552204 599 True 588.000000 588 84.385000 2 601 1 chr4B.!!$R1 599
24 TraesCS3B01G565000 chr1D 73966807 73967377 570 True 571.000000 571 84.843000 31 600 1 chr1D.!!$R1 569
25 TraesCS3B01G565000 chr5D 484049270 484049867 597 True 569.000000 569 83.860000 2 601 1 chr5D.!!$R1 599
26 TraesCS3B01G565000 chr5D 300705052 300705665 613 False 562.000000 562 83.333000 2 614 1 chr5D.!!$F1 612

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
711 725 0.029267 ATCTGCTTCTCCCCCTCCAT 60.029 55.000 0.0 0.0 0.0 3.41 F
1176 1218 0.032813 CCATCCAAGGGTGCCAAGAT 60.033 55.000 0.0 0.0 0.0 2.40 F
1181 1223 0.107017 CAAGGGTGCCAAGATCCGAT 60.107 55.000 0.0 0.0 0.0 4.18 F
1182 1224 0.625849 AAGGGTGCCAAGATCCGATT 59.374 50.000 0.0 0.0 0.0 3.34 F
1183 1225 0.625849 AGGGTGCCAAGATCCGATTT 59.374 50.000 0.0 0.0 0.0 2.17 F
1184 1226 1.025041 GGGTGCCAAGATCCGATTTC 58.975 55.000 0.0 0.0 0.0 2.17 F
1185 1227 1.408822 GGGTGCCAAGATCCGATTTCT 60.409 52.381 0.0 0.0 0.0 2.52 F
1186 1228 1.943340 GGTGCCAAGATCCGATTTCTC 59.057 52.381 0.0 0.0 0.0 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2652 3266 1.475403 ATGGCTACAGCGTAGTGAGT 58.525 50.000 14.32 0.0 43.26 3.41 R
2661 3275 3.814842 TGCACATACATAATGGCTACAGC 59.185 43.478 0.00 0.0 40.16 4.40 R
3168 3910 3.937706 CCACCTCAATTAGCAGAAGACAG 59.062 47.826 0.00 0.0 0.00 3.51 R
3369 4114 3.787634 CGCATAATCACAAAGCATGTCAC 59.212 43.478 0.00 0.0 41.46 3.67 R
3464 4209 2.910319 ACTGCCTTGTGTATAGGGAACA 59.090 45.455 0.00 0.0 32.33 3.18 R
3480 4225 3.190874 GAGTTCAGCATGTAGTACTGCC 58.809 50.000 5.39 0.0 39.22 4.85 R
3990 4751 4.074970 ACTGTTTTGCTATCTCCACCTTG 58.925 43.478 0.00 0.0 0.00 3.61 R
4218 5505 9.201989 TCATCCTATTAGTTATGTCTCACTGTT 57.798 33.333 4.22 0.0 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.345808 GCGCGTGGTTTGCTGAGA 61.346 61.111 8.43 0.00 0.00 3.27
40 41 1.816224 GGGCGCTGGTTTCTATTTTGA 59.184 47.619 7.64 0.00 0.00 2.69
59 60 1.933181 GACAATGATGATGGCGTCGAA 59.067 47.619 0.00 0.00 32.54 3.71
71 72 2.184579 GTCGAAAGGAGCTCGGGG 59.815 66.667 7.83 0.00 36.93 5.73
104 105 3.838903 ACTTTGGTAGTCGGATCTTTCCT 59.161 43.478 0.00 0.00 40.17 3.36
129 130 0.468226 TCCGAGGTGCTCTTTTGTGT 59.532 50.000 0.00 0.00 0.00 3.72
134 135 2.423538 GAGGTGCTCTTTTGTGTGTTGT 59.576 45.455 0.00 0.00 0.00 3.32
137 138 3.993736 GGTGCTCTTTTGTGTGTTGTTTT 59.006 39.130 0.00 0.00 0.00 2.43
158 159 3.799366 TGTTGCTTTGAAGTCGGAGTTA 58.201 40.909 0.00 0.00 0.00 2.24
165 166 0.600057 GAAGTCGGAGTTACGGTGGT 59.400 55.000 0.00 0.00 0.00 4.16
191 192 0.250234 CCAGGTGGTGACGATGACAT 59.750 55.000 0.00 0.00 0.00 3.06
198 199 1.672737 GGTGACGATGACATGCACTCA 60.673 52.381 0.00 0.00 0.00 3.41
201 202 2.491693 TGACGATGACATGCACTCAGTA 59.508 45.455 0.00 0.00 0.00 2.74
211 212 1.946768 TGCACTCAGTAGTTGTTTGCC 59.053 47.619 0.00 0.00 35.85 4.52
212 213 1.946768 GCACTCAGTAGTTGTTTGCCA 59.053 47.619 0.00 0.00 31.97 4.92
234 235 2.176273 GCATGATCGGCGCAAGTCT 61.176 57.895 10.83 0.00 42.28 3.24
280 282 2.473816 CGTCAAAAGTCAGAGCTGTCA 58.526 47.619 0.00 0.00 0.00 3.58
285 287 4.883585 TCAAAAGTCAGAGCTGTCATTTGT 59.116 37.500 17.83 0.00 37.97 2.83
291 293 0.874390 GAGCTGTCATTTGTTGGCGA 59.126 50.000 0.00 0.00 30.28 5.54
292 294 0.593128 AGCTGTCATTTGTTGGCGAC 59.407 50.000 0.00 0.00 30.28 5.19
328 330 1.374252 ATGTGTCGTCGTGGCTTCC 60.374 57.895 0.00 0.00 0.00 3.46
340 344 2.251642 GGCTTCCGCGACTGTTTGT 61.252 57.895 8.23 0.00 36.88 2.83
398 404 2.126463 TCGCTCGTTCGAGGCAAG 60.126 61.111 20.97 0.00 34.09 4.01
424 430 0.878086 TGACGATGACGCTTGCAACA 60.878 50.000 0.00 0.00 43.96 3.33
453 459 4.676924 GTGTATGTGTTTCTTCTTTGCAGC 59.323 41.667 0.00 0.00 0.00 5.25
454 460 4.580167 TGTATGTGTTTCTTCTTTGCAGCT 59.420 37.500 0.00 0.00 0.00 4.24
523 536 2.817844 GTGGGTTGGGTTGTATCAGTTC 59.182 50.000 0.00 0.00 0.00 3.01
526 539 4.351407 TGGGTTGGGTTGTATCAGTTCTAA 59.649 41.667 0.00 0.00 0.00 2.10
556 570 4.587891 TCCGTCAATTAACCGGGTAATTT 58.412 39.130 30.63 15.88 41.98 1.82
572 586 8.903820 CCGGGTAATTTTCTTCTTCTTAATCAT 58.096 33.333 0.00 0.00 0.00 2.45
602 616 4.753107 TGGTAAGTCTTTTGCCTCGTTTAG 59.247 41.667 0.00 0.00 0.00 1.85
608 622 6.263344 AGTCTTTTGCCTCGTTTAGAAAAAC 58.737 36.000 0.00 0.00 41.36 2.43
609 623 6.031471 GTCTTTTGCCTCGTTTAGAAAAACA 58.969 36.000 2.33 0.00 44.37 2.83
610 624 6.695713 GTCTTTTGCCTCGTTTAGAAAAACAT 59.304 34.615 2.33 0.00 44.37 2.71
611 625 6.915843 TCTTTTGCCTCGTTTAGAAAAACATC 59.084 34.615 2.33 0.00 44.37 3.06
612 626 4.759516 TGCCTCGTTTAGAAAAACATCC 57.240 40.909 2.33 0.00 44.37 3.51
613 627 4.138290 TGCCTCGTTTAGAAAAACATCCA 58.862 39.130 2.33 0.00 44.37 3.41
614 628 4.764823 TGCCTCGTTTAGAAAAACATCCAT 59.235 37.500 2.33 0.00 44.37 3.41
615 629 5.242838 TGCCTCGTTTAGAAAAACATCCATT 59.757 36.000 2.33 0.00 44.37 3.16
616 630 6.156519 GCCTCGTTTAGAAAAACATCCATTT 58.843 36.000 2.33 0.00 44.37 2.32
617 631 7.040340 TGCCTCGTTTAGAAAAACATCCATTTA 60.040 33.333 2.33 0.00 44.37 1.40
618 632 7.484959 GCCTCGTTTAGAAAAACATCCATTTAG 59.515 37.037 2.33 0.00 44.37 1.85
619 633 8.726988 CCTCGTTTAGAAAAACATCCATTTAGA 58.273 33.333 2.33 0.00 44.37 2.10
626 640 8.902540 AGAAAAACATCCATTTAGAAAAACCC 57.097 30.769 0.00 0.00 0.00 4.11
627 641 8.713971 AGAAAAACATCCATTTAGAAAAACCCT 58.286 29.630 0.00 0.00 0.00 4.34
628 642 9.337396 GAAAAACATCCATTTAGAAAAACCCTT 57.663 29.630 0.00 0.00 0.00 3.95
629 643 8.902540 AAAACATCCATTTAGAAAAACCCTTC 57.097 30.769 0.00 0.00 0.00 3.46
630 644 6.267496 ACATCCATTTAGAAAAACCCTTCG 57.733 37.500 0.00 0.00 0.00 3.79
631 645 6.007703 ACATCCATTTAGAAAAACCCTTCGA 58.992 36.000 0.00 0.00 0.00 3.71
632 646 6.663523 ACATCCATTTAGAAAAACCCTTCGAT 59.336 34.615 0.00 0.00 0.00 3.59
633 647 6.509418 TCCATTTAGAAAAACCCTTCGATG 57.491 37.500 0.00 0.00 0.00 3.84
634 648 6.007703 TCCATTTAGAAAAACCCTTCGATGT 58.992 36.000 0.00 0.00 0.00 3.06
635 649 6.072175 TCCATTTAGAAAAACCCTTCGATGTG 60.072 38.462 0.00 0.00 0.00 3.21
636 650 4.759516 TTAGAAAAACCCTTCGATGTGC 57.240 40.909 0.00 0.00 0.00 4.57
637 651 2.582052 AGAAAAACCCTTCGATGTGCA 58.418 42.857 0.00 0.00 0.00 4.57
638 652 2.554032 AGAAAAACCCTTCGATGTGCAG 59.446 45.455 0.00 0.00 0.00 4.41
639 653 0.598065 AAAACCCTTCGATGTGCAGC 59.402 50.000 0.00 0.00 0.00 5.25
640 654 0.537143 AAACCCTTCGATGTGCAGCA 60.537 50.000 0.00 0.00 0.00 4.41
641 655 0.537143 AACCCTTCGATGTGCAGCAA 60.537 50.000 0.00 0.00 0.00 3.91
642 656 0.537143 ACCCTTCGATGTGCAGCAAA 60.537 50.000 0.00 0.00 0.00 3.68
643 657 0.813184 CCCTTCGATGTGCAGCAAAT 59.187 50.000 0.00 0.00 0.00 2.32
644 658 1.203052 CCCTTCGATGTGCAGCAAATT 59.797 47.619 0.00 0.00 0.00 1.82
645 659 2.353011 CCCTTCGATGTGCAGCAAATTT 60.353 45.455 0.00 0.00 0.00 1.82
646 660 3.119531 CCCTTCGATGTGCAGCAAATTTA 60.120 43.478 0.00 0.00 0.00 1.40
647 661 3.853671 CCTTCGATGTGCAGCAAATTTAC 59.146 43.478 0.00 0.00 0.00 2.01
648 662 3.116063 TCGATGTGCAGCAAATTTACG 57.884 42.857 0.00 0.00 0.00 3.18
649 663 2.482336 TCGATGTGCAGCAAATTTACGT 59.518 40.909 0.00 0.00 0.00 3.57
650 664 3.058570 TCGATGTGCAGCAAATTTACGTT 60.059 39.130 0.00 0.00 0.00 3.99
651 665 3.057999 CGATGTGCAGCAAATTTACGTTG 59.942 43.478 0.00 0.00 0.00 4.10
652 666 2.736978 TGTGCAGCAAATTTACGTTGG 58.263 42.857 0.00 0.00 0.00 3.77
653 667 1.455408 GTGCAGCAAATTTACGTTGGC 59.545 47.619 0.00 0.00 0.00 4.52
654 668 1.067693 GCAGCAAATTTACGTTGGCC 58.932 50.000 0.00 0.00 0.00 5.36
655 669 1.604185 GCAGCAAATTTACGTTGGCCA 60.604 47.619 0.00 0.00 0.00 5.36
656 670 2.327568 CAGCAAATTTACGTTGGCCAG 58.672 47.619 5.11 0.00 0.00 4.85
657 671 1.067693 GCAAATTTACGTTGGCCAGC 58.932 50.000 10.00 10.00 0.00 4.85
658 672 1.708822 CAAATTTACGTTGGCCAGCC 58.291 50.000 14.64 0.38 0.00 4.85
659 673 1.000283 CAAATTTACGTTGGCCAGCCA 60.000 47.619 14.64 7.43 45.63 4.75
671 685 4.738998 CAGCCACCGATTGCCCCA 62.739 66.667 0.00 0.00 0.00 4.96
672 686 3.978193 AGCCACCGATTGCCCCAA 61.978 61.111 0.00 0.00 0.00 4.12
673 687 2.994417 GCCACCGATTGCCCCAAA 60.994 61.111 0.00 0.00 0.00 3.28
674 688 2.969827 CCACCGATTGCCCCAAAC 59.030 61.111 0.00 0.00 0.00 2.93
675 689 1.905843 CCACCGATTGCCCCAAACA 60.906 57.895 0.00 0.00 0.00 2.83
676 690 1.467678 CCACCGATTGCCCCAAACAA 61.468 55.000 0.00 0.00 0.00 2.83
677 691 0.390860 CACCGATTGCCCCAAACAAA 59.609 50.000 0.00 0.00 0.00 2.83
678 692 0.391228 ACCGATTGCCCCAAACAAAC 59.609 50.000 0.00 0.00 0.00 2.93
679 693 0.390860 CCGATTGCCCCAAACAAACA 59.609 50.000 0.00 0.00 0.00 2.83
680 694 1.202580 CCGATTGCCCCAAACAAACAA 60.203 47.619 0.00 0.00 0.00 2.83
681 695 2.134346 CGATTGCCCCAAACAAACAAG 58.866 47.619 0.00 0.00 0.00 3.16
682 696 2.223923 CGATTGCCCCAAACAAACAAGA 60.224 45.455 0.00 0.00 0.00 3.02
683 697 2.977772 TTGCCCCAAACAAACAAGAG 57.022 45.000 0.00 0.00 0.00 2.85
684 698 0.463620 TGCCCCAAACAAACAAGAGC 59.536 50.000 0.00 0.00 0.00 4.09
685 699 0.249868 GCCCCAAACAAACAAGAGCC 60.250 55.000 0.00 0.00 0.00 4.70
686 700 0.392706 CCCCAAACAAACAAGAGCCC 59.607 55.000 0.00 0.00 0.00 5.19
687 701 0.031994 CCCAAACAAACAAGAGCCCG 59.968 55.000 0.00 0.00 0.00 6.13
688 702 0.597377 CCAAACAAACAAGAGCCCGC 60.597 55.000 0.00 0.00 0.00 6.13
689 703 0.102120 CAAACAAACAAGAGCCCGCA 59.898 50.000 0.00 0.00 0.00 5.69
690 704 0.102300 AAACAAACAAGAGCCCGCAC 59.898 50.000 0.00 0.00 0.00 5.34
691 705 2.058829 AACAAACAAGAGCCCGCACG 62.059 55.000 0.00 0.00 0.00 5.34
692 706 2.110213 AAACAAGAGCCCGCACGA 59.890 55.556 0.00 0.00 0.00 4.35
693 707 1.302511 AAACAAGAGCCCGCACGAT 60.303 52.632 0.00 0.00 0.00 3.73
694 708 1.298859 AAACAAGAGCCCGCACGATC 61.299 55.000 0.00 0.00 0.00 3.69
695 709 2.172483 AACAAGAGCCCGCACGATCT 62.172 55.000 0.00 0.00 0.00 2.75
696 710 2.169789 CAAGAGCCCGCACGATCTG 61.170 63.158 0.00 0.00 0.00 2.90
697 711 4.521062 AGAGCCCGCACGATCTGC 62.521 66.667 6.98 6.98 43.21 4.26
698 712 4.521062 GAGCCCGCACGATCTGCT 62.521 66.667 13.06 0.00 44.64 4.24
699 713 4.087892 AGCCCGCACGATCTGCTT 62.088 61.111 13.06 0.00 44.64 3.91
700 714 3.567797 GCCCGCACGATCTGCTTC 61.568 66.667 13.06 2.02 44.64 3.86
701 715 2.185350 CCCGCACGATCTGCTTCT 59.815 61.111 13.06 0.00 44.64 2.85
702 716 1.880340 CCCGCACGATCTGCTTCTC 60.880 63.158 13.06 0.00 44.64 2.87
703 717 1.880340 CCGCACGATCTGCTTCTCC 60.880 63.158 13.06 0.00 44.64 3.71
704 718 1.880340 CGCACGATCTGCTTCTCCC 60.880 63.158 13.06 0.00 44.64 4.30
705 719 1.522580 GCACGATCTGCTTCTCCCC 60.523 63.158 9.16 0.00 43.33 4.81
706 720 1.144936 CACGATCTGCTTCTCCCCC 59.855 63.158 0.00 0.00 0.00 5.40
707 721 1.002274 ACGATCTGCTTCTCCCCCT 59.998 57.895 0.00 0.00 0.00 4.79
708 722 1.045911 ACGATCTGCTTCTCCCCCTC 61.046 60.000 0.00 0.00 0.00 4.30
709 723 1.753368 CGATCTGCTTCTCCCCCTCC 61.753 65.000 0.00 0.00 0.00 4.30
710 724 0.692419 GATCTGCTTCTCCCCCTCCA 60.692 60.000 0.00 0.00 0.00 3.86
711 725 0.029267 ATCTGCTTCTCCCCCTCCAT 60.029 55.000 0.00 0.00 0.00 3.41
712 726 0.692419 TCTGCTTCTCCCCCTCCATC 60.692 60.000 0.00 0.00 0.00 3.51
713 727 0.693767 CTGCTTCTCCCCCTCCATCT 60.694 60.000 0.00 0.00 0.00 2.90
714 728 0.692419 TGCTTCTCCCCCTCCATCTC 60.692 60.000 0.00 0.00 0.00 2.75
715 729 0.399806 GCTTCTCCCCCTCCATCTCT 60.400 60.000 0.00 0.00 0.00 3.10
716 730 1.715785 CTTCTCCCCCTCCATCTCTC 58.284 60.000 0.00 0.00 0.00 3.20
717 731 0.266152 TTCTCCCCCTCCATCTCTCC 59.734 60.000 0.00 0.00 0.00 3.71
718 732 0.931250 TCTCCCCCTCCATCTCTCCA 60.931 60.000 0.00 0.00 0.00 3.86
719 733 0.762461 CTCCCCCTCCATCTCTCCAC 60.762 65.000 0.00 0.00 0.00 4.02
720 734 1.003442 CCCCCTCCATCTCTCCACA 59.997 63.158 0.00 0.00 0.00 4.17
721 735 0.621571 CCCCCTCCATCTCTCCACAA 60.622 60.000 0.00 0.00 0.00 3.33
722 736 0.835941 CCCCTCCATCTCTCCACAAG 59.164 60.000 0.00 0.00 0.00 3.16
723 737 1.577736 CCCTCCATCTCTCCACAAGT 58.422 55.000 0.00 0.00 0.00 3.16
724 738 1.209019 CCCTCCATCTCTCCACAAGTG 59.791 57.143 0.00 0.00 0.00 3.16
734 748 3.472263 CCACAAGTGGCTTTTACGC 57.528 52.632 6.27 0.00 44.73 4.42
735 749 0.951558 CCACAAGTGGCTTTTACGCT 59.048 50.000 6.27 0.00 44.73 5.07
736 750 1.334960 CCACAAGTGGCTTTTACGCTG 60.335 52.381 6.27 0.00 44.73 5.18
737 751 1.333619 CACAAGTGGCTTTTACGCTGT 59.666 47.619 0.00 0.00 0.00 4.40
738 752 1.602377 ACAAGTGGCTTTTACGCTGTC 59.398 47.619 0.00 0.00 0.00 3.51
739 753 0.865769 AAGTGGCTTTTACGCTGTCG 59.134 50.000 0.00 0.00 42.43 4.35
740 754 1.154469 GTGGCTTTTACGCTGTCGC 60.154 57.895 0.00 0.00 39.84 5.19
741 755 2.322081 TGGCTTTTACGCTGTCGCC 61.322 57.895 0.00 0.00 39.84 5.54
742 756 2.095843 GCTTTTACGCTGTCGCCG 59.904 61.111 0.00 0.00 39.84 6.46
743 757 2.664436 GCTTTTACGCTGTCGCCGT 61.664 57.895 0.00 0.00 42.26 5.68
744 758 1.414897 CTTTTACGCTGTCGCCGTC 59.585 57.895 0.00 0.00 39.88 4.79
745 759 2.262187 CTTTTACGCTGTCGCCGTCG 62.262 60.000 0.00 0.00 39.88 5.12
781 795 2.596338 TCGACCACGTCCTCTGCA 60.596 61.111 0.00 0.00 40.69 4.41
782 796 2.142357 CTCGACCACGTCCTCTGCAA 62.142 60.000 0.00 0.00 40.69 4.08
793 807 0.173708 CCTCTGCAACCTACCGTCTC 59.826 60.000 0.00 0.00 0.00 3.36
800 814 1.268899 CAACCTACCGTCTCGACAAGT 59.731 52.381 0.00 0.00 0.00 3.16
818 832 2.349755 GGCTAGGGTTTCACGCCA 59.650 61.111 0.00 0.00 40.41 5.69
820 834 2.038837 GCTAGGGTTTCACGCCACC 61.039 63.158 0.00 0.00 0.00 4.61
863 877 4.501714 GTCGCCACGCCATACCGA 62.502 66.667 0.00 0.00 0.00 4.69
918 932 2.047655 CGTCCTTTGCCGCCTACA 60.048 61.111 0.00 0.00 0.00 2.74
1018 1060 3.258228 ATGCTGCACGAGAAGCCCA 62.258 57.895 10.58 0.00 46.67 5.36
1020 1062 1.153369 GCTGCACGAGAAGCCCATA 60.153 57.895 0.52 0.00 40.87 2.74
1022 1064 0.811616 CTGCACGAGAAGCCCATACC 60.812 60.000 0.00 0.00 0.00 2.73
1023 1065 1.523938 GCACGAGAAGCCCATACCC 60.524 63.158 0.00 0.00 0.00 3.69
1028 1070 1.349026 CGAGAAGCCCATACCCATCAT 59.651 52.381 0.00 0.00 0.00 2.45
1055 1097 1.681666 CCGATGATGGAGATGGGGG 59.318 63.158 0.00 0.00 0.00 5.40
1061 1103 2.216881 TGATGGAGATGGGGGAAACAT 58.783 47.619 0.00 0.00 0.00 2.71
1173 1215 3.270944 ACCATCCAAGGGTGCCAA 58.729 55.556 0.00 0.00 37.23 4.52
1174 1216 1.077265 ACCATCCAAGGGTGCCAAG 59.923 57.895 0.00 0.00 37.23 3.61
1175 1217 1.383799 CCATCCAAGGGTGCCAAGA 59.616 57.895 0.00 0.00 0.00 3.02
1176 1218 0.032813 CCATCCAAGGGTGCCAAGAT 60.033 55.000 0.00 0.00 0.00 2.40
1177 1219 1.396653 CATCCAAGGGTGCCAAGATC 58.603 55.000 0.00 0.00 0.00 2.75
1178 1220 0.259938 ATCCAAGGGTGCCAAGATCC 59.740 55.000 0.00 0.00 0.00 3.36
1179 1221 1.750399 CCAAGGGTGCCAAGATCCG 60.750 63.158 0.00 0.00 0.00 4.18
1180 1222 1.299648 CAAGGGTGCCAAGATCCGA 59.700 57.895 0.00 0.00 0.00 4.55
1181 1223 0.107017 CAAGGGTGCCAAGATCCGAT 60.107 55.000 0.00 0.00 0.00 4.18
1182 1224 0.625849 AAGGGTGCCAAGATCCGATT 59.374 50.000 0.00 0.00 0.00 3.34
1183 1225 0.625849 AGGGTGCCAAGATCCGATTT 59.374 50.000 0.00 0.00 0.00 2.17
1184 1226 1.025041 GGGTGCCAAGATCCGATTTC 58.975 55.000 0.00 0.00 0.00 2.17
1185 1227 1.408822 GGGTGCCAAGATCCGATTTCT 60.409 52.381 0.00 0.00 0.00 2.52
1186 1228 1.943340 GGTGCCAAGATCCGATTTCTC 59.057 52.381 0.00 0.00 0.00 2.87
1187 1229 2.632377 GTGCCAAGATCCGATTTCTCA 58.368 47.619 0.00 0.00 0.00 3.27
1188 1230 3.209410 GTGCCAAGATCCGATTTCTCAT 58.791 45.455 0.00 0.00 0.00 2.90
1189 1231 3.003068 GTGCCAAGATCCGATTTCTCATG 59.997 47.826 0.00 0.00 0.00 3.07
1190 1232 2.031333 GCCAAGATCCGATTTCTCATGC 60.031 50.000 0.00 0.00 0.00 4.06
1191 1233 2.222678 CCAAGATCCGATTTCTCATGCG 59.777 50.000 0.00 0.00 0.00 4.73
1192 1234 3.126073 CAAGATCCGATTTCTCATGCGA 58.874 45.455 0.00 0.00 0.00 5.10
1193 1235 2.748605 AGATCCGATTTCTCATGCGAC 58.251 47.619 0.00 0.00 0.00 5.19
1446 1539 2.552315 CCTGCCACTTTATTTGACACGT 59.448 45.455 0.00 0.00 0.00 4.49
1646 1914 7.423844 TCATCTATGTGTAGGTTGTGAATCT 57.576 36.000 0.00 0.00 0.00 2.40
1833 2110 7.383029 CCTCGTAATTTTGTAAGTGTACTGTCA 59.617 37.037 0.00 0.00 0.00 3.58
2105 2411 4.843220 ATTCTTTGCTGTGGTTTCTGAG 57.157 40.909 0.00 0.00 0.00 3.35
2430 2757 2.206576 AGCTTTACAGGGCTCAAAGG 57.793 50.000 0.00 0.00 32.98 3.11
2524 3119 9.837525 GAATTGCTTCTGAATTATATCATGTCC 57.162 33.333 0.00 0.00 0.00 4.02
2527 3122 7.666623 TGCTTCTGAATTATATCATGTCCGTA 58.333 34.615 0.00 0.00 0.00 4.02
2652 3266 7.062749 ACTTCTGTAGACCAAAGTATGTCAA 57.937 36.000 0.00 0.00 33.89 3.18
2661 3275 5.227908 ACCAAAGTATGTCAACTCACTACG 58.772 41.667 0.00 0.00 0.00 3.51
2863 3582 7.816945 ATTTCAAAGAAAATCAAGGTATGCG 57.183 32.000 0.00 0.00 0.00 4.73
3168 3910 6.979238 GGTTATGCTTATGACGTAGGATATCC 59.021 42.308 14.41 14.41 31.66 2.59
3464 4209 2.567615 AGGAAGTTTATGAGTCTGGCGT 59.432 45.455 0.00 0.00 0.00 5.68
3480 4225 2.277084 GGCGTGTTCCCTATACACAAG 58.723 52.381 0.00 0.00 44.73 3.16
3990 4751 2.680312 TGGCTCAGTATGCTCAGAAC 57.320 50.000 0.00 0.00 34.76 3.01
4079 4840 1.204231 GTAAGGTTCTGTCCCGAGACC 59.796 57.143 0.00 0.00 42.81 3.85
4218 5505 6.149640 GTGTCTATGATCCGTTAGCTCATCTA 59.850 42.308 0.00 0.00 32.20 1.98
4370 5678 9.048446 GTTCAAACTACTACATCAAACTTGGTA 57.952 33.333 0.00 0.00 0.00 3.25
4373 5681 7.958053 AACTACTACATCAAACTTGGTACAC 57.042 36.000 0.00 0.00 39.29 2.90
4385 5693 6.659745 AACTTGGTACACACTACTACATCA 57.340 37.500 0.00 0.00 39.29 3.07
4386 5694 6.659745 ACTTGGTACACACTACTACATCAA 57.340 37.500 0.00 0.00 39.29 2.57
4387 5695 7.058023 ACTTGGTACACACTACTACATCAAA 57.942 36.000 0.00 0.00 39.29 2.69
4388 5696 6.927381 ACTTGGTACACACTACTACATCAAAC 59.073 38.462 0.00 0.00 39.29 2.93
4389 5697 6.659745 TGGTACACACTACTACATCAAACT 57.340 37.500 0.00 0.00 0.00 2.66
4390 5698 7.764141 TGGTACACACTACTACATCAAACTA 57.236 36.000 0.00 0.00 0.00 2.24
4391 5699 7.596494 TGGTACACACTACTACATCAAACTAC 58.404 38.462 0.00 0.00 0.00 2.73
4392 5700 7.449395 TGGTACACACTACTACATCAAACTACT 59.551 37.037 0.00 0.00 0.00 2.57
4393 5701 8.950210 GGTACACACTACTACATCAAACTACTA 58.050 37.037 0.00 0.00 0.00 1.82
4394 5702 9.766277 GTACACACTACTACATCAAACTACTAC 57.234 37.037 0.00 0.00 0.00 2.73
4395 5703 8.400184 ACACACTACTACATCAAACTACTACA 57.600 34.615 0.00 0.00 0.00 2.74
4396 5704 9.021807 ACACACTACTACATCAAACTACTACAT 57.978 33.333 0.00 0.00 0.00 2.29
4397 5705 9.504710 CACACTACTACATCAAACTACTACATC 57.495 37.037 0.00 0.00 0.00 3.06
4398 5706 9.239551 ACACTACTACATCAAACTACTACATCA 57.760 33.333 0.00 0.00 0.00 3.07
4403 5711 9.944376 ACTACATCAAACTACTACATCAAACAT 57.056 29.630 0.00 0.00 0.00 2.71
4406 5714 8.514594 ACATCAAACTACTACATCAAACATTGG 58.485 33.333 0.00 0.00 0.00 3.16
4407 5715 7.447374 TCAAACTACTACATCAAACATTGGG 57.553 36.000 0.00 0.00 0.00 4.12
4408 5716 7.001674 TCAAACTACTACATCAAACATTGGGT 58.998 34.615 0.00 0.00 0.00 4.51
4409 5717 6.817765 AACTACTACATCAAACATTGGGTG 57.182 37.500 0.00 0.00 0.00 4.61
4410 5718 4.700213 ACTACTACATCAAACATTGGGTGC 59.300 41.667 0.00 0.00 0.00 5.01
4411 5719 3.495331 ACTACATCAAACATTGGGTGCA 58.505 40.909 0.00 0.00 0.00 4.57
4412 5720 3.894427 ACTACATCAAACATTGGGTGCAA 59.106 39.130 0.00 0.00 0.00 4.08
4413 5721 3.110447 ACATCAAACATTGGGTGCAAC 57.890 42.857 0.00 0.00 0.00 4.17
4414 5722 2.433604 ACATCAAACATTGGGTGCAACA 59.566 40.909 3.06 0.00 39.98 3.33
4415 5723 3.118482 ACATCAAACATTGGGTGCAACAA 60.118 39.130 3.06 5.74 39.98 2.83
4416 5724 2.898705 TCAAACATTGGGTGCAACAAC 58.101 42.857 3.06 0.00 39.98 3.32
4417 5725 2.234661 TCAAACATTGGGTGCAACAACA 59.765 40.909 3.06 0.00 39.98 3.33
4418 5726 3.005554 CAAACATTGGGTGCAACAACAA 58.994 40.909 3.06 0.00 39.98 2.83
4419 5727 2.307934 ACATTGGGTGCAACAACAAC 57.692 45.000 3.06 0.00 37.90 3.32
4420 5728 1.207390 CATTGGGTGCAACAACAACG 58.793 50.000 3.06 0.00 37.90 4.10
4421 5729 0.529555 ATTGGGTGCAACAACAACGC 60.530 50.000 3.06 0.00 37.90 4.84
4422 5730 2.279186 GGGTGCAACAACAACGCC 60.279 61.111 3.06 0.00 39.98 5.68
4423 5731 2.781158 GGGTGCAACAACAACGCCT 61.781 57.895 3.06 0.00 39.98 5.52
4424 5732 1.140804 GGTGCAACAACAACGCCTT 59.859 52.632 0.00 0.00 39.98 4.35
4425 5733 0.459411 GGTGCAACAACAACGCCTTT 60.459 50.000 0.00 0.00 39.98 3.11
4426 5734 1.202313 GGTGCAACAACAACGCCTTTA 60.202 47.619 0.00 0.00 39.98 1.85
4442 5750 2.354805 CCTTTACTCCCTTTGTCCCTCG 60.355 54.545 0.00 0.00 0.00 4.63
4472 5783 1.275421 GGCTAGGGTTTCTGCCTCCT 61.275 60.000 0.00 0.00 41.92 3.69
4505 5816 2.251409 CGTATCTCCCACGTCTCCTA 57.749 55.000 0.00 0.00 34.74 2.94
4580 5891 2.618709 CTCCGTTTTCAGGTGCTTCTTT 59.381 45.455 0.00 0.00 0.00 2.52
4583 5894 4.641094 TCCGTTTTCAGGTGCTTCTTTAAA 59.359 37.500 0.00 0.00 0.00 1.52
4605 5916 7.663043 AAATTTTGTTAGGGTTTGTGTCCTA 57.337 32.000 0.00 0.00 34.75 2.94
4648 5959 3.817647 GCGGCTTCTTGAAGATGGAATAT 59.182 43.478 13.87 0.00 0.00 1.28
4664 5975 2.112279 ATATGGTTCTCCCCGCCTAA 57.888 50.000 0.00 0.00 0.00 2.69
4685 5996 1.680487 CCCGTCCCAATGGTGTGTA 59.320 57.895 0.00 0.00 0.00 2.90
4686 5997 0.392461 CCCGTCCCAATGGTGTGTAG 60.392 60.000 0.00 0.00 0.00 2.74
4687 5998 1.024579 CCGTCCCAATGGTGTGTAGC 61.025 60.000 0.00 0.00 0.00 3.58
4688 5999 0.321210 CGTCCCAATGGTGTGTAGCA 60.321 55.000 0.00 0.00 38.89 3.49
4689 6000 1.678728 CGTCCCAATGGTGTGTAGCAT 60.679 52.381 0.00 0.00 46.37 3.79
4690 6001 2.017049 GTCCCAATGGTGTGTAGCATC 58.983 52.381 0.00 0.00 43.81 3.91
4691 6002 1.632920 TCCCAATGGTGTGTAGCATCA 59.367 47.619 0.00 0.00 43.81 3.07
4731 6044 3.211288 CCTCCGGCAGATCTCGTT 58.789 61.111 0.00 0.00 0.00 3.85
4738 6051 3.132289 TCCGGCAGATCTCGTTAGATTTT 59.868 43.478 0.00 0.00 42.73 1.82
4779 6092 3.967335 CCGCTCGGATCCGGTCTC 61.967 72.222 32.79 17.71 39.67 3.36
4780 6093 3.209812 CGCTCGGATCCGGTCTCA 61.210 66.667 32.79 13.25 40.25 3.27
4786 6104 2.885266 CTCGGATCCGGTCTCATCTTTA 59.115 50.000 32.79 8.89 40.25 1.85
4814 6132 3.008485 GTGTCTTCAGGTTGGATCCTTCT 59.992 47.826 14.23 4.81 35.37 2.85
4828 6176 6.524018 TTGGATCCTTCTGATCTAAAAAGGCA 60.524 38.462 14.23 2.88 44.92 4.75
4853 6201 1.153168 CTATGGGACCTTGGCACGG 60.153 63.158 8.71 8.71 0.00 4.94
4854 6202 1.910580 CTATGGGACCTTGGCACGGT 61.911 60.000 16.43 16.43 37.50 4.83
4860 6208 0.818040 GACCTTGGCACGGTGACTTT 60.818 55.000 21.54 0.00 34.19 2.66
4883 6231 4.454847 TCCGACTCTCTACTACAACAAGTG 59.545 45.833 0.00 0.00 0.00 3.16
4889 6237 2.701423 TCTACTACAACAAGTGGTGCCA 59.299 45.455 0.00 0.00 42.43 4.92
4895 6243 1.999634 AACAAGTGGTGCCAGGCTCT 62.000 55.000 14.15 3.16 0.00 4.09
4897 6245 2.149383 AAGTGGTGCCAGGCTCTGA 61.149 57.895 14.15 0.00 32.44 3.27
4900 6248 4.767255 GGTGCCAGGCTCTGACGG 62.767 72.222 14.15 0.00 32.44 4.79
4939 6287 3.426568 GCGCCTTCTGCTCGCTTT 61.427 61.111 0.00 0.00 44.79 3.51
4944 6292 1.941668 GCCTTCTGCTCGCTTTAGTGT 60.942 52.381 0.00 0.00 36.87 3.55
4987 6335 9.778741 GTGGTCTATGAATCTGGATGTAATTTA 57.221 33.333 0.00 0.00 0.00 1.40
5036 6384 7.175119 ACTGCCATGATTGAAGATGAATAGATG 59.825 37.037 0.00 0.00 0.00 2.90
5037 6385 7.228590 TGCCATGATTGAAGATGAATAGATGA 58.771 34.615 0.00 0.00 0.00 2.92
5039 6387 8.740906 GCCATGATTGAAGATGAATAGATGAAT 58.259 33.333 0.00 0.00 0.00 2.57
5104 6452 5.235516 ACTACTACATCAAACTTGGTTCGG 58.764 41.667 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.345808 TCTCAGCAAACCACGCGC 61.346 61.111 5.73 0.00 0.00 6.86
17 18 2.193087 AATAGAAACCAGCGCCCCGT 62.193 55.000 2.29 0.00 0.00 5.28
40 41 2.022764 TTCGACGCCATCATCATTGT 57.977 45.000 0.00 0.00 0.00 2.71
96 97 1.134280 CCTCGGACATGCAGGAAAGAT 60.134 52.381 4.84 0.00 0.00 2.40
104 105 1.830587 AAGAGCACCTCGGACATGCA 61.831 55.000 10.43 0.00 41.97 3.96
129 130 4.384247 CGACTTCAAAGCAACAAAACAACA 59.616 37.500 0.00 0.00 0.00 3.33
134 135 3.442273 ACTCCGACTTCAAAGCAACAAAA 59.558 39.130 0.00 0.00 0.00 2.44
137 138 2.325583 ACTCCGACTTCAAAGCAACA 57.674 45.000 0.00 0.00 0.00 3.33
191 192 1.946768 GGCAAACAACTACTGAGTGCA 59.053 47.619 0.00 0.00 38.97 4.57
211 212 3.957535 GCGCCGATCATGCCCTTG 61.958 66.667 0.00 0.00 0.00 3.61
212 213 3.993614 TTGCGCCGATCATGCCCTT 62.994 57.895 4.18 0.00 0.00 3.95
234 235 2.223782 GCATCGCAAGGGAAATATGCAA 60.224 45.455 0.00 0.00 40.04 4.08
259 260 1.795286 GACAGCTCTGACTTTTGACGG 59.205 52.381 3.60 0.00 0.00 4.79
264 265 5.450965 CCAACAAATGACAGCTCTGACTTTT 60.451 40.000 3.60 5.79 34.79 2.27
280 282 1.659794 GCCACAGTCGCCAACAAAT 59.340 52.632 0.00 0.00 0.00 2.32
304 306 1.502990 CCACGACGACACATGCCAAA 61.503 55.000 0.00 0.00 0.00 3.28
328 330 2.631428 CACCCACAAACAGTCGCG 59.369 61.111 0.00 0.00 0.00 5.87
332 336 0.755327 GAAGCCCACCCACAAACAGT 60.755 55.000 0.00 0.00 0.00 3.55
340 344 1.303236 CATCAACGAAGCCCACCCA 60.303 57.895 0.00 0.00 0.00 4.51
398 404 2.860628 GCGTCATCGTCATCACCGC 61.861 63.158 0.00 0.00 39.49 5.68
424 430 5.552870 AGAAGAAACACATACACTGAGGT 57.447 39.130 0.00 0.00 0.00 3.85
433 439 5.049198 CAGAGCTGCAAAGAAGAAACACATA 60.049 40.000 1.02 0.00 0.00 2.29
438 444 3.065925 ACACAGAGCTGCAAAGAAGAAAC 59.934 43.478 1.02 0.00 0.00 2.78
572 586 6.478512 AGGCAAAAGACTTACCATTTTCAA 57.521 33.333 5.03 0.00 0.00 2.69
602 616 8.902540 AGGGTTTTTCTAAATGGATGTTTTTC 57.097 30.769 0.00 0.00 0.00 2.29
608 622 6.509418 TCGAAGGGTTTTTCTAAATGGATG 57.491 37.500 0.00 0.00 0.00 3.51
609 623 6.663523 ACATCGAAGGGTTTTTCTAAATGGAT 59.336 34.615 0.00 0.00 0.00 3.41
610 624 6.007703 ACATCGAAGGGTTTTTCTAAATGGA 58.992 36.000 0.00 0.00 0.00 3.41
611 625 6.092748 CACATCGAAGGGTTTTTCTAAATGG 58.907 40.000 0.00 0.00 0.00 3.16
612 626 5.572896 GCACATCGAAGGGTTTTTCTAAATG 59.427 40.000 0.00 0.00 0.00 2.32
613 627 5.242838 TGCACATCGAAGGGTTTTTCTAAAT 59.757 36.000 0.00 0.00 0.00 1.40
614 628 4.580995 TGCACATCGAAGGGTTTTTCTAAA 59.419 37.500 0.00 0.00 0.00 1.85
615 629 4.138290 TGCACATCGAAGGGTTTTTCTAA 58.862 39.130 0.00 0.00 0.00 2.10
616 630 3.745799 TGCACATCGAAGGGTTTTTCTA 58.254 40.909 0.00 0.00 0.00 2.10
617 631 2.554032 CTGCACATCGAAGGGTTTTTCT 59.446 45.455 0.00 0.00 0.00 2.52
618 632 2.922335 GCTGCACATCGAAGGGTTTTTC 60.922 50.000 0.00 0.00 0.00 2.29
619 633 1.000274 GCTGCACATCGAAGGGTTTTT 60.000 47.619 0.00 0.00 0.00 1.94
620 634 0.598065 GCTGCACATCGAAGGGTTTT 59.402 50.000 0.00 0.00 0.00 2.43
621 635 0.537143 TGCTGCACATCGAAGGGTTT 60.537 50.000 0.00 0.00 0.00 3.27
622 636 0.537143 TTGCTGCACATCGAAGGGTT 60.537 50.000 0.00 0.00 0.00 4.11
623 637 0.537143 TTTGCTGCACATCGAAGGGT 60.537 50.000 0.00 0.00 0.00 4.34
624 638 0.813184 ATTTGCTGCACATCGAAGGG 59.187 50.000 0.00 0.00 0.00 3.95
625 639 2.642139 AATTTGCTGCACATCGAAGG 57.358 45.000 0.00 0.00 0.00 3.46
626 640 3.539563 CGTAAATTTGCTGCACATCGAAG 59.460 43.478 0.00 0.00 0.00 3.79
627 641 3.058570 ACGTAAATTTGCTGCACATCGAA 60.059 39.130 13.11 1.41 0.00 3.71
628 642 2.482336 ACGTAAATTTGCTGCACATCGA 59.518 40.909 13.11 0.00 0.00 3.59
629 643 2.850321 ACGTAAATTTGCTGCACATCG 58.150 42.857 0.00 4.32 0.00 3.84
630 644 3.364621 CCAACGTAAATTTGCTGCACATC 59.635 43.478 0.00 0.00 0.00 3.06
631 645 3.316283 CCAACGTAAATTTGCTGCACAT 58.684 40.909 0.00 0.00 0.00 3.21
632 646 2.736978 CCAACGTAAATTTGCTGCACA 58.263 42.857 0.00 0.00 0.00 4.57
633 647 1.455408 GCCAACGTAAATTTGCTGCAC 59.545 47.619 0.00 0.00 0.00 4.57
634 648 1.604185 GGCCAACGTAAATTTGCTGCA 60.604 47.619 0.00 0.00 0.00 4.41
635 649 1.067693 GGCCAACGTAAATTTGCTGC 58.932 50.000 0.00 0.00 0.00 5.25
636 650 2.327568 CTGGCCAACGTAAATTTGCTG 58.672 47.619 7.01 0.00 0.00 4.41
637 651 1.336795 GCTGGCCAACGTAAATTTGCT 60.337 47.619 7.01 0.00 0.00 3.91
638 652 1.067693 GCTGGCCAACGTAAATTTGC 58.932 50.000 7.01 0.00 0.00 3.68
639 653 1.000283 TGGCTGGCCAACGTAAATTTG 60.000 47.619 12.27 0.00 44.12 2.32
640 654 1.333177 TGGCTGGCCAACGTAAATTT 58.667 45.000 12.27 0.00 44.12 1.82
641 655 3.043998 TGGCTGGCCAACGTAAATT 57.956 47.368 12.27 0.00 44.12 1.82
642 656 4.832741 TGGCTGGCCAACGTAAAT 57.167 50.000 12.27 0.00 44.12 1.40
657 671 1.467678 TTGTTTGGGGCAATCGGTGG 61.468 55.000 0.00 0.00 0.00 4.61
658 672 0.390860 TTTGTTTGGGGCAATCGGTG 59.609 50.000 0.00 0.00 0.00 4.94
659 673 0.391228 GTTTGTTTGGGGCAATCGGT 59.609 50.000 0.00 0.00 0.00 4.69
660 674 0.390860 TGTTTGTTTGGGGCAATCGG 59.609 50.000 0.00 0.00 0.00 4.18
661 675 2.134346 CTTGTTTGTTTGGGGCAATCG 58.866 47.619 0.00 0.00 0.00 3.34
662 676 3.392882 CTCTTGTTTGTTTGGGGCAATC 58.607 45.455 0.00 0.00 0.00 2.67
663 677 2.485302 GCTCTTGTTTGTTTGGGGCAAT 60.485 45.455 0.00 0.00 0.00 3.56
664 678 1.134551 GCTCTTGTTTGTTTGGGGCAA 60.135 47.619 0.00 0.00 0.00 4.52
665 679 0.463620 GCTCTTGTTTGTTTGGGGCA 59.536 50.000 0.00 0.00 0.00 5.36
666 680 0.249868 GGCTCTTGTTTGTTTGGGGC 60.250 55.000 0.00 0.00 0.00 5.80
667 681 0.392706 GGGCTCTTGTTTGTTTGGGG 59.607 55.000 0.00 0.00 0.00 4.96
668 682 0.031994 CGGGCTCTTGTTTGTTTGGG 59.968 55.000 0.00 0.00 0.00 4.12
669 683 0.597377 GCGGGCTCTTGTTTGTTTGG 60.597 55.000 0.00 0.00 0.00 3.28
670 684 0.102120 TGCGGGCTCTTGTTTGTTTG 59.898 50.000 0.00 0.00 0.00 2.93
671 685 0.102300 GTGCGGGCTCTTGTTTGTTT 59.898 50.000 0.00 0.00 0.00 2.83
672 686 1.733526 GTGCGGGCTCTTGTTTGTT 59.266 52.632 0.00 0.00 0.00 2.83
673 687 2.542907 CGTGCGGGCTCTTGTTTGT 61.543 57.895 0.00 0.00 0.00 2.83
674 688 1.577328 ATCGTGCGGGCTCTTGTTTG 61.577 55.000 0.00 0.00 0.00 2.93
675 689 1.298859 GATCGTGCGGGCTCTTGTTT 61.299 55.000 0.00 0.00 0.00 2.83
676 690 1.741770 GATCGTGCGGGCTCTTGTT 60.742 57.895 0.00 0.00 0.00 2.83
677 691 2.125512 GATCGTGCGGGCTCTTGT 60.126 61.111 0.00 0.00 0.00 3.16
678 692 2.169789 CAGATCGTGCGGGCTCTTG 61.170 63.158 0.00 0.00 0.00 3.02
679 693 2.185350 CAGATCGTGCGGGCTCTT 59.815 61.111 0.00 0.00 0.00 2.85
680 694 4.521062 GCAGATCGTGCGGGCTCT 62.521 66.667 2.13 0.00 43.99 4.09
688 702 1.144936 GGGGGAGAAGCAGATCGTG 59.855 63.158 0.00 0.00 0.00 4.35
689 703 1.002274 AGGGGGAGAAGCAGATCGT 59.998 57.895 0.00 0.00 0.00 3.73
690 704 1.745264 GAGGGGGAGAAGCAGATCG 59.255 63.158 0.00 0.00 0.00 3.69
691 705 0.692419 TGGAGGGGGAGAAGCAGATC 60.692 60.000 0.00 0.00 0.00 2.75
692 706 0.029267 ATGGAGGGGGAGAAGCAGAT 60.029 55.000 0.00 0.00 0.00 2.90
693 707 0.692419 GATGGAGGGGGAGAAGCAGA 60.692 60.000 0.00 0.00 0.00 4.26
694 708 0.693767 AGATGGAGGGGGAGAAGCAG 60.694 60.000 0.00 0.00 0.00 4.24
695 709 0.692419 GAGATGGAGGGGGAGAAGCA 60.692 60.000 0.00 0.00 0.00 3.91
696 710 0.399806 AGAGATGGAGGGGGAGAAGC 60.400 60.000 0.00 0.00 0.00 3.86
697 711 1.715785 GAGAGATGGAGGGGGAGAAG 58.284 60.000 0.00 0.00 0.00 2.85
698 712 0.266152 GGAGAGATGGAGGGGGAGAA 59.734 60.000 0.00 0.00 0.00 2.87
699 713 0.931250 TGGAGAGATGGAGGGGGAGA 60.931 60.000 0.00 0.00 0.00 3.71
700 714 0.762461 GTGGAGAGATGGAGGGGGAG 60.762 65.000 0.00 0.00 0.00 4.30
701 715 1.314867 GTGGAGAGATGGAGGGGGA 59.685 63.158 0.00 0.00 0.00 4.81
702 716 0.621571 TTGTGGAGAGATGGAGGGGG 60.622 60.000 0.00 0.00 0.00 5.40
703 717 0.835941 CTTGTGGAGAGATGGAGGGG 59.164 60.000 0.00 0.00 0.00 4.79
704 718 1.209019 CACTTGTGGAGAGATGGAGGG 59.791 57.143 0.00 0.00 0.00 4.30
705 719 1.209019 CCACTTGTGGAGAGATGGAGG 59.791 57.143 14.15 0.00 0.00 4.30
706 720 1.406614 GCCACTTGTGGAGAGATGGAG 60.407 57.143 22.52 0.00 0.00 3.86
707 721 0.615331 GCCACTTGTGGAGAGATGGA 59.385 55.000 22.52 0.00 0.00 3.41
708 722 0.617413 AGCCACTTGTGGAGAGATGG 59.383 55.000 22.52 0.00 0.00 3.51
709 723 2.486472 AAGCCACTTGTGGAGAGATG 57.514 50.000 22.52 0.00 0.00 2.90
710 724 3.515602 AAAAGCCACTTGTGGAGAGAT 57.484 42.857 22.52 2.44 0.00 2.75
711 725 3.740115 GTAAAAGCCACTTGTGGAGAGA 58.260 45.455 22.52 1.51 0.00 3.10
712 726 2.480419 CGTAAAAGCCACTTGTGGAGAG 59.520 50.000 22.52 3.40 0.00 3.20
713 727 2.489971 CGTAAAAGCCACTTGTGGAGA 58.510 47.619 22.52 0.51 0.00 3.71
714 728 1.069227 GCGTAAAAGCCACTTGTGGAG 60.069 52.381 22.52 5.99 0.00 3.86
715 729 0.948678 GCGTAAAAGCCACTTGTGGA 59.051 50.000 22.52 0.00 0.00 4.02
716 730 0.951558 AGCGTAAAAGCCACTTGTGG 59.048 50.000 14.94 14.94 38.01 4.17
717 731 1.333619 ACAGCGTAAAAGCCACTTGTG 59.666 47.619 0.00 0.00 38.01 3.33
718 732 1.602377 GACAGCGTAAAAGCCACTTGT 59.398 47.619 0.00 0.00 38.01 3.16
719 733 1.398451 CGACAGCGTAAAAGCCACTTG 60.398 52.381 0.00 0.00 38.01 3.16
720 734 0.865769 CGACAGCGTAAAAGCCACTT 59.134 50.000 0.00 0.00 38.01 3.16
721 735 1.566018 GCGACAGCGTAAAAGCCACT 61.566 55.000 0.00 0.00 40.36 4.00
722 736 1.154469 GCGACAGCGTAAAAGCCAC 60.154 57.895 0.00 0.00 40.36 5.01
723 737 2.322081 GGCGACAGCGTAAAAGCCA 61.322 57.895 8.13 0.00 46.35 4.75
724 738 2.479198 GGCGACAGCGTAAAAGCC 59.521 61.111 0.00 0.00 46.35 4.35
725 739 2.095843 CGGCGACAGCGTAAAAGC 59.904 61.111 0.00 0.00 46.35 3.51
726 740 1.414897 GACGGCGACAGCGTAAAAG 59.585 57.895 16.62 0.00 46.35 2.27
727 741 2.366584 CGACGGCGACAGCGTAAAA 61.367 57.895 16.62 0.00 46.35 1.52
728 742 2.801996 CGACGGCGACAGCGTAAA 60.802 61.111 16.62 0.00 46.35 2.01
748 762 4.610714 GAGATTCGGGGAGGCGGC 62.611 72.222 0.00 0.00 0.00 6.53
749 763 4.286320 CGAGATTCGGGGAGGCGG 62.286 72.222 0.00 0.00 36.00 6.13
750 764 3.217017 TCGAGATTCGGGGAGGCG 61.217 66.667 0.00 0.00 40.88 5.52
751 765 2.417936 GTCGAGATTCGGGGAGGC 59.582 66.667 0.00 0.00 40.88 4.70
756 770 1.226603 GACGTGGTCGAGATTCGGG 60.227 63.158 0.00 0.00 40.88 5.14
757 771 1.226603 GGACGTGGTCGAGATTCGG 60.227 63.158 0.00 0.00 40.88 4.30
759 773 1.096416 AGAGGACGTGGTCGAGATTC 58.904 55.000 0.00 0.00 40.62 2.52
762 776 2.333417 GCAGAGGACGTGGTCGAGA 61.333 63.158 0.00 0.00 40.62 4.04
764 778 2.197605 TTGCAGAGGACGTGGTCGA 61.198 57.895 0.00 0.00 40.62 4.20
781 795 1.268899 CACTTGTCGAGACGGTAGGTT 59.731 52.381 0.00 0.00 0.00 3.50
782 796 0.879765 CACTTGTCGAGACGGTAGGT 59.120 55.000 0.00 0.00 0.00 3.08
793 807 1.270625 TGAAACCCTAGCCACTTGTCG 60.271 52.381 0.00 0.00 0.00 4.35
800 814 2.349755 GGCGTGAAACCCTAGCCA 59.650 61.111 0.00 0.00 46.48 4.75
846 860 4.501714 TCGGTATGGCGTGGCGAC 62.502 66.667 0.00 0.00 34.27 5.19
925 939 2.028190 CGATCTGCTGGCGTAGGG 59.972 66.667 0.00 0.00 0.00 3.53
1018 1060 1.145738 GGCCAGTTGGATGATGGGTAT 59.854 52.381 0.00 0.00 37.39 2.73
1020 1062 1.307647 GGCCAGTTGGATGATGGGT 59.692 57.895 0.00 0.00 37.39 4.51
1022 1064 0.179009 ATCGGCCAGTTGGATGATGG 60.179 55.000 2.24 0.00 37.39 3.51
1023 1065 0.949397 CATCGGCCAGTTGGATGATG 59.051 55.000 11.03 14.54 39.89 3.07
1028 1070 1.224315 CCATCATCGGCCAGTTGGA 59.776 57.895 2.24 0.00 37.39 3.53
1055 1097 1.586154 CCCTGTCCACGCCATGTTTC 61.586 60.000 0.00 0.00 0.00 2.78
1061 1103 4.631740 TCTCCCCTGTCCACGCCA 62.632 66.667 0.00 0.00 0.00 5.69
1168 1210 3.208594 CATGAGAAATCGGATCTTGGCA 58.791 45.455 0.00 0.00 0.00 4.92
1169 1211 2.031333 GCATGAGAAATCGGATCTTGGC 60.031 50.000 0.00 0.00 0.00 4.52
1170 1212 2.222678 CGCATGAGAAATCGGATCTTGG 59.777 50.000 0.00 0.00 0.00 3.61
1171 1213 3.060003 GTCGCATGAGAAATCGGATCTTG 60.060 47.826 0.00 0.00 0.00 3.02
1172 1214 3.126831 GTCGCATGAGAAATCGGATCTT 58.873 45.455 0.00 0.00 0.00 2.40
1173 1215 2.101415 TGTCGCATGAGAAATCGGATCT 59.899 45.455 0.00 0.00 0.00 2.75
1174 1216 2.473816 TGTCGCATGAGAAATCGGATC 58.526 47.619 0.00 0.00 0.00 3.36
1175 1217 2.101415 TCTGTCGCATGAGAAATCGGAT 59.899 45.455 0.00 0.00 0.00 4.18
1176 1218 1.476488 TCTGTCGCATGAGAAATCGGA 59.524 47.619 0.00 0.00 0.00 4.55
1177 1219 1.590238 GTCTGTCGCATGAGAAATCGG 59.410 52.381 0.00 0.00 0.00 4.18
1178 1220 2.262211 TGTCTGTCGCATGAGAAATCG 58.738 47.619 0.00 0.00 0.00 3.34
1179 1221 3.002042 CCATGTCTGTCGCATGAGAAATC 59.998 47.826 0.00 0.00 44.60 2.17
1180 1222 2.941064 CCATGTCTGTCGCATGAGAAAT 59.059 45.455 0.00 0.00 44.60 2.17
1181 1223 2.028203 TCCATGTCTGTCGCATGAGAAA 60.028 45.455 0.00 0.00 44.60 2.52
1182 1224 1.550072 TCCATGTCTGTCGCATGAGAA 59.450 47.619 0.00 0.00 44.60 2.87
1183 1225 1.135721 CTCCATGTCTGTCGCATGAGA 59.864 52.381 0.00 0.00 44.60 3.27
1184 1226 1.568606 CTCCATGTCTGTCGCATGAG 58.431 55.000 0.00 0.00 44.60 2.90
1185 1227 0.176449 CCTCCATGTCTGTCGCATGA 59.824 55.000 0.00 0.00 44.60 3.07
1186 1228 0.812811 CCCTCCATGTCTGTCGCATG 60.813 60.000 0.00 0.00 42.29 4.06
1187 1229 1.524002 CCCTCCATGTCTGTCGCAT 59.476 57.895 0.00 0.00 0.00 4.73
1188 1230 2.981302 CCCTCCATGTCTGTCGCA 59.019 61.111 0.00 0.00 0.00 5.10
1189 1231 2.512515 GCCCTCCATGTCTGTCGC 60.513 66.667 0.00 0.00 0.00 5.19
1190 1232 1.448540 GTGCCCTCCATGTCTGTCG 60.449 63.158 0.00 0.00 0.00 4.35
1191 1233 1.078143 GGTGCCCTCCATGTCTGTC 60.078 63.158 0.00 0.00 0.00 3.51
1192 1234 1.210204 ATGGTGCCCTCCATGTCTGT 61.210 55.000 1.35 0.00 45.26 3.41
1193 1235 0.465097 GATGGTGCCCTCCATGTCTG 60.465 60.000 6.60 0.00 46.72 3.51
1446 1539 4.825422 CTTCTATCTTGCTGTGTTCCTCA 58.175 43.478 0.00 0.00 0.00 3.86
2105 2411 7.359765 GCAATGGCAATAGATACAAAATCATGC 60.360 37.037 0.00 0.00 40.72 4.06
2417 2744 3.308188 GGTAACATACCTTTGAGCCCTGT 60.308 47.826 0.00 0.00 45.52 4.00
2524 3119 6.712241 AACAAGTCAATCAACTGAGATACG 57.288 37.500 0.00 0.00 0.00 3.06
2527 3122 7.721399 ACCTTTAACAAGTCAATCAACTGAGAT 59.279 33.333 0.00 0.00 0.00 2.75
2598 3207 8.328758 TGACTAAAGATCCACATGTTTTCCTAT 58.671 33.333 0.00 0.00 28.74 2.57
2599 3208 7.685481 TGACTAAAGATCCACATGTTTTCCTA 58.315 34.615 0.00 0.00 28.74 2.94
2600 3209 6.542821 TGACTAAAGATCCACATGTTTTCCT 58.457 36.000 0.00 0.00 28.74 3.36
2607 3220 8.037758 AGAAGTAACTGACTAAAGATCCACATG 58.962 37.037 0.00 0.00 37.44 3.21
2652 3266 1.475403 ATGGCTACAGCGTAGTGAGT 58.525 50.000 14.32 0.00 43.26 3.41
2661 3275 3.814842 TGCACATACATAATGGCTACAGC 59.185 43.478 0.00 0.00 40.16 4.40
2694 3308 8.562892 ACAAGAATTAGTTGACACATCTGAAAG 58.437 33.333 6.96 0.00 0.00 2.62
2863 3582 9.906660 TTAATTCCAACAGTTTGATCACATAAC 57.093 29.630 0.00 0.00 34.24 1.89
3168 3910 3.937706 CCACCTCAATTAGCAGAAGACAG 59.062 47.826 0.00 0.00 0.00 3.51
3369 4114 3.787634 CGCATAATCACAAAGCATGTCAC 59.212 43.478 0.00 0.00 41.46 3.67
3464 4209 2.910319 ACTGCCTTGTGTATAGGGAACA 59.090 45.455 0.00 0.00 32.33 3.18
3480 4225 3.190874 GAGTTCAGCATGTAGTACTGCC 58.809 50.000 5.39 0.00 39.22 4.85
3990 4751 4.074970 ACTGTTTTGCTATCTCCACCTTG 58.925 43.478 0.00 0.00 0.00 3.61
4218 5505 9.201989 TCATCCTATTAGTTATGTCTCACTGTT 57.798 33.333 4.22 0.00 0.00 3.16
4370 5678 8.400184 TGTAGTAGTTTGATGTAGTAGTGTGT 57.600 34.615 0.00 0.00 0.00 3.72
4385 5693 6.294508 GCACCCAATGTTTGATGTAGTAGTTT 60.295 38.462 0.00 0.00 0.00 2.66
4386 5694 5.183140 GCACCCAATGTTTGATGTAGTAGTT 59.817 40.000 0.00 0.00 0.00 2.24
4387 5695 4.700213 GCACCCAATGTTTGATGTAGTAGT 59.300 41.667 0.00 0.00 0.00 2.73
4388 5696 4.699735 TGCACCCAATGTTTGATGTAGTAG 59.300 41.667 0.00 0.00 0.00 2.57
4389 5697 4.657013 TGCACCCAATGTTTGATGTAGTA 58.343 39.130 0.00 0.00 0.00 1.82
4390 5698 3.495331 TGCACCCAATGTTTGATGTAGT 58.505 40.909 0.00 0.00 0.00 2.73
4391 5699 4.236935 GTTGCACCCAATGTTTGATGTAG 58.763 43.478 0.00 0.00 32.75 2.74
4392 5700 3.638627 TGTTGCACCCAATGTTTGATGTA 59.361 39.130 0.00 0.00 32.75 2.29
4393 5701 2.433604 TGTTGCACCCAATGTTTGATGT 59.566 40.909 0.00 0.00 32.75 3.06
4394 5702 3.109044 TGTTGCACCCAATGTTTGATG 57.891 42.857 0.00 0.00 32.75 3.07
4395 5703 3.118482 TGTTGTTGCACCCAATGTTTGAT 60.118 39.130 1.64 0.00 32.75 2.57
4396 5704 2.234661 TGTTGTTGCACCCAATGTTTGA 59.765 40.909 1.64 0.00 32.75 2.69
4397 5705 2.625737 TGTTGTTGCACCCAATGTTTG 58.374 42.857 1.64 0.00 32.75 2.93
4398 5706 3.006247 GTTGTTGTTGCACCCAATGTTT 58.994 40.909 1.64 0.00 32.75 2.83
4399 5707 2.626840 GTTGTTGTTGCACCCAATGTT 58.373 42.857 1.64 0.00 32.75 2.71
4400 5708 1.470632 CGTTGTTGTTGCACCCAATGT 60.471 47.619 1.64 0.00 32.75 2.71
4401 5709 1.207390 CGTTGTTGTTGCACCCAATG 58.793 50.000 1.64 0.00 32.75 2.82
4402 5710 0.529555 GCGTTGTTGTTGCACCCAAT 60.530 50.000 1.64 0.00 32.75 3.16
4403 5711 1.153745 GCGTTGTTGTTGCACCCAA 60.154 52.632 0.00 0.00 0.00 4.12
4404 5712 2.492090 GCGTTGTTGTTGCACCCA 59.508 55.556 0.00 0.00 0.00 4.51
4405 5713 2.279186 GGCGTTGTTGTTGCACCC 60.279 61.111 0.00 0.00 0.00 4.61
4406 5714 0.459411 AAAGGCGTTGTTGTTGCACC 60.459 50.000 0.00 0.00 0.00 5.01
4407 5715 1.849829 GTAAAGGCGTTGTTGTTGCAC 59.150 47.619 0.00 0.00 0.00 4.57
4408 5716 1.746220 AGTAAAGGCGTTGTTGTTGCA 59.254 42.857 0.00 0.00 0.00 4.08
4409 5717 2.381589 GAGTAAAGGCGTTGTTGTTGC 58.618 47.619 0.00 0.00 0.00 4.17
4410 5718 2.287368 GGGAGTAAAGGCGTTGTTGTTG 60.287 50.000 0.00 0.00 0.00 3.33
4411 5719 1.951602 GGGAGTAAAGGCGTTGTTGTT 59.048 47.619 0.00 0.00 0.00 2.83
4412 5720 1.142262 AGGGAGTAAAGGCGTTGTTGT 59.858 47.619 0.00 0.00 0.00 3.32
4413 5721 1.892209 AGGGAGTAAAGGCGTTGTTG 58.108 50.000 0.00 0.00 0.00 3.33
4414 5722 2.621526 CAAAGGGAGTAAAGGCGTTGTT 59.378 45.455 0.00 0.00 0.00 2.83
4415 5723 2.227194 CAAAGGGAGTAAAGGCGTTGT 58.773 47.619 0.00 0.00 0.00 3.32
4416 5724 2.225727 GACAAAGGGAGTAAAGGCGTTG 59.774 50.000 0.00 0.00 0.00 4.10
4417 5725 2.501261 GACAAAGGGAGTAAAGGCGTT 58.499 47.619 0.00 0.00 0.00 4.84
4418 5726 1.271217 GGACAAAGGGAGTAAAGGCGT 60.271 52.381 0.00 0.00 0.00 5.68
4419 5727 1.450025 GGACAAAGGGAGTAAAGGCG 58.550 55.000 0.00 0.00 0.00 5.52
4420 5728 1.354705 AGGGACAAAGGGAGTAAAGGC 59.645 52.381 0.00 0.00 0.00 4.35
4421 5729 2.354805 CGAGGGACAAAGGGAGTAAAGG 60.355 54.545 0.00 0.00 0.00 3.11
4422 5730 2.565834 TCGAGGGACAAAGGGAGTAAAG 59.434 50.000 0.00 0.00 0.00 1.85
4423 5731 2.612000 TCGAGGGACAAAGGGAGTAAA 58.388 47.619 0.00 0.00 0.00 2.01
4424 5732 2.314071 TCGAGGGACAAAGGGAGTAA 57.686 50.000 0.00 0.00 0.00 2.24
4425 5733 2.176889 CTTCGAGGGACAAAGGGAGTA 58.823 52.381 0.00 0.00 0.00 2.59
4426 5734 0.977395 CTTCGAGGGACAAAGGGAGT 59.023 55.000 0.00 0.00 0.00 3.85
4442 5750 0.035343 ACCCTAGCCGCCTTTTCTTC 60.035 55.000 0.00 0.00 0.00 2.87
4487 5798 2.820787 CCATAGGAGACGTGGGAGATAC 59.179 54.545 0.00 0.00 37.35 2.24
4488 5799 2.818216 GCCATAGGAGACGTGGGAGATA 60.818 54.545 0.00 0.00 40.16 1.98
4554 5865 0.537371 CACCTGAAAACGGAGCCCTT 60.537 55.000 0.00 0.00 0.00 3.95
4580 5891 7.663043 AGGACACAAACCCTAACAAAATTTA 57.337 32.000 0.00 0.00 0.00 1.40
4583 5894 6.370453 AGTAGGACACAAACCCTAACAAAAT 58.630 36.000 0.00 0.00 36.84 1.82
4605 5916 0.241481 GCCGTCTCGTCTTCTTGAGT 59.759 55.000 0.00 0.00 33.88 3.41
4648 5959 2.295602 GGTTAGGCGGGGAGAACCA 61.296 63.158 0.00 0.00 40.91 3.67
4664 5975 3.657350 CACCATTGGGACGGGGGT 61.657 66.667 7.78 0.00 38.05 4.95
4673 5984 4.036567 CAATGATGCTACACACCATTGG 57.963 45.455 5.06 0.00 39.94 3.16
4685 5996 1.452651 CACGCCCTCCAATGATGCT 60.453 57.895 0.00 0.00 0.00 3.79
4686 5997 1.750399 ACACGCCCTCCAATGATGC 60.750 57.895 0.00 0.00 0.00 3.91
4687 5998 1.378882 CCACACGCCCTCCAATGATG 61.379 60.000 0.00 0.00 0.00 3.07
4688 5999 1.077501 CCACACGCCCTCCAATGAT 60.078 57.895 0.00 0.00 0.00 2.45
4689 6000 2.184020 CTCCACACGCCCTCCAATGA 62.184 60.000 0.00 0.00 0.00 2.57
4690 6001 1.746615 CTCCACACGCCCTCCAATG 60.747 63.158 0.00 0.00 0.00 2.82
4691 6002 2.671070 CTCCACACGCCCTCCAAT 59.329 61.111 0.00 0.00 0.00 3.16
4692 6003 3.636231 CCTCCACACGCCCTCCAA 61.636 66.667 0.00 0.00 0.00 3.53
4693 6004 4.954118 ACCTCCACACGCCCTCCA 62.954 66.667 0.00 0.00 0.00 3.86
4714 6027 3.396638 ATCTAACGAGATCTGCCGGAGG 61.397 54.545 5.05 0.00 45.91 4.30
4718 6031 3.865745 ACAAAATCTAACGAGATCTGCCG 59.134 43.478 0.00 0.07 41.87 5.69
4722 6035 5.103000 CACCGACAAAATCTAACGAGATCT 58.897 41.667 0.00 0.00 41.87 2.75
4730 6043 4.710324 AGACAACCACCGACAAAATCTAA 58.290 39.130 0.00 0.00 0.00 2.10
4731 6044 4.345859 AGACAACCACCGACAAAATCTA 57.654 40.909 0.00 0.00 0.00 1.98
4738 6051 0.253610 ACCAAAGACAACCACCGACA 59.746 50.000 0.00 0.00 0.00 4.35
4779 6092 7.621428 ACCTGAAGACACATGAATAAAGATG 57.379 36.000 0.00 0.00 0.00 2.90
4780 6093 7.121759 CCAACCTGAAGACACATGAATAAAGAT 59.878 37.037 0.00 0.00 0.00 2.40
4786 6104 4.371624 TCCAACCTGAAGACACATGAAT 57.628 40.909 0.00 0.00 0.00 2.57
4814 6132 4.934356 AGGACCAATGCCTTTTTAGATCA 58.066 39.130 0.00 0.00 29.44 2.92
4824 6142 3.357874 TCCCATAGGACCAATGCCT 57.642 52.632 0.00 0.00 37.19 4.75
4853 6201 4.694509 TGTAGTAGAGAGTCGGAAAGTCAC 59.305 45.833 0.00 0.00 0.00 3.67
4854 6202 4.903054 TGTAGTAGAGAGTCGGAAAGTCA 58.097 43.478 0.00 0.00 0.00 3.41
4860 6208 4.454847 CACTTGTTGTAGTAGAGAGTCGGA 59.545 45.833 0.00 0.00 0.00 4.55
4867 6215 3.244078 TGGCACCACTTGTTGTAGTAGAG 60.244 47.826 0.00 0.00 0.00 2.43
4883 6231 4.767255 CCGTCAGAGCCTGGCACC 62.767 72.222 22.65 12.16 35.60 5.01
4889 6237 2.685380 CCTTCCCCGTCAGAGCCT 60.685 66.667 0.00 0.00 0.00 4.58
4900 6248 4.547367 CCGTCATCGCCCCTTCCC 62.547 72.222 0.00 0.00 35.54 3.97
4903 6251 4.096003 CCACCGTCATCGCCCCTT 62.096 66.667 0.00 0.00 35.54 3.95
4930 6278 3.724374 ACTACAAACACTAAAGCGAGCA 58.276 40.909 0.00 0.00 0.00 4.26
4939 6287 3.125829 CCTAGCGACGACTACAAACACTA 59.874 47.826 0.00 0.00 0.00 2.74
4944 6292 1.200716 CCACCTAGCGACGACTACAAA 59.799 52.381 0.00 0.00 0.00 2.83
5004 6352 4.650734 TCTTCAATCATGGCAGTACAACA 58.349 39.130 0.00 0.00 0.00 3.33
5062 6410 4.213564 AGTTTGAACCAAATTTGCACCA 57.786 36.364 12.92 6.59 35.74 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.