Multiple sequence alignment - TraesCS3B01G564900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G564900 chr3B 100.000 5210 0 0 1 5210 797647229 797642020 0.000000e+00 9622.0
1 TraesCS3B01G564900 chr3B 74.090 907 150 49 3003 3842 797218820 797219708 1.420000e-75 294.0
2 TraesCS3B01G564900 chr3B 78.378 333 40 9 267 574 145449885 145449560 2.480000e-43 187.0
3 TraesCS3B01G564900 chr3B 92.982 114 4 1 584 693 153651866 153651753 4.170000e-36 163.0
4 TraesCS3B01G564900 chr3B 95.833 72 3 0 1435 1506 797645738 797645667 3.300000e-22 117.0
5 TraesCS3B01G564900 chr3B 95.833 72 3 0 1492 1563 797645795 797645724 3.300000e-22 117.0
6 TraesCS3B01G564900 chr3B 87.273 55 3 3 4255 4309 728502898 728502948 5.630000e-05 60.2
7 TraesCS3B01G564900 chr3A 91.368 2989 102 67 965 3905 724902951 724900071 0.000000e+00 3947.0
8 TraesCS3B01G564900 chr3A 93.700 1238 32 27 3989 5206 724900072 724898861 0.000000e+00 1812.0
9 TraesCS3B01G564900 chr3A 86.508 630 39 7 1 584 724904191 724903562 0.000000e+00 651.0
10 TraesCS3B01G564900 chr3A 80.965 373 65 5 4465 4836 443344361 443343994 1.840000e-74 291.0
11 TraesCS3B01G564900 chr3A 92.899 169 8 2 691 859 724903555 724903391 5.210000e-60 243.0
12 TraesCS3B01G564900 chr3A 81.500 200 30 6 391 584 429541643 429541841 1.940000e-34 158.0
13 TraesCS3B01G564900 chr3A 95.652 92 4 0 865 956 724903133 724903042 1.170000e-31 148.0
14 TraesCS3B01G564900 chr3A 94.565 92 5 0 3897 3988 737369169 737369260 5.440000e-30 143.0
15 TraesCS3B01G564900 chr3A 100.000 31 0 0 1523 1553 724902470 724902440 2.030000e-04 58.4
16 TraesCS3B01G564900 chr2B 86.292 766 72 20 4459 5200 350303940 350304696 0.000000e+00 802.0
17 TraesCS3B01G564900 chr3D 76.806 983 143 51 2945 3867 594177922 594178879 1.700000e-129 473.0
18 TraesCS3B01G564900 chr3D 100.000 28 0 0 4279 4306 382751677 382751704 9.000000e-03 52.8
19 TraesCS3B01G564900 chr4D 80.928 388 57 15 4458 4842 357262427 357262054 1.840000e-74 291.0
20 TraesCS3B01G564900 chr4D 77.070 314 47 10 295 584 501181791 501181479 1.940000e-34 158.0
21 TraesCS3B01G564900 chr1D 82.222 315 53 2 4461 4774 318381806 318381494 8.600000e-68 268.0
22 TraesCS3B01G564900 chr1D 77.534 365 56 10 245 583 472336065 472335701 4.120000e-46 196.0
23 TraesCS3B01G564900 chr1D 100.000 28 0 0 4279 4306 379476234 379476261 9.000000e-03 52.8
24 TraesCS3B01G564900 chr6A 79.893 373 67 7 4465 4836 600850673 600850308 3.090000e-67 267.0
25 TraesCS3B01G564900 chr6A 79.832 238 38 8 241 472 617233440 617233673 1.160000e-36 165.0
26 TraesCS3B01G564900 chr1A 80.503 318 57 3 4458 4774 399505328 399505015 6.740000e-59 239.0
27 TraesCS3B01G564900 chr1A 80.657 274 27 13 334 582 266181924 266181652 6.890000e-44 189.0
28 TraesCS3B01G564900 chr5D 82.374 278 44 4 4459 4733 520124461 520124186 2.430000e-58 237.0
29 TraesCS3B01G564900 chr5D 77.108 332 50 11 278 584 410082955 410082625 8.970000e-38 169.0
30 TraesCS3B01G564900 chr7D 81.655 278 45 5 4458 4733 627179094 627178821 5.250000e-55 226.0
31 TraesCS3B01G564900 chr5A 77.808 365 53 11 246 583 502438508 502438871 3.180000e-47 200.0
32 TraesCS3B01G564900 chr5A 100.000 28 0 0 4279 4306 600445154 600445127 9.000000e-03 52.8
33 TraesCS3B01G564900 chr7B 92.982 114 4 1 584 693 535690860 535690747 4.170000e-36 163.0
34 TraesCS3B01G564900 chr7B 96.629 89 3 0 3900 3988 740996244 740996156 1.170000e-31 148.0
35 TraesCS3B01G564900 chr7B 100.000 28 0 0 4280 4307 724467334 724467361 9.000000e-03 52.8
36 TraesCS3B01G564900 chr4B 92.982 114 4 1 584 693 653049564 653049677 4.170000e-36 163.0
37 TraesCS3B01G564900 chr4B 93.684 95 6 0 3897 3991 4233608 4233514 5.440000e-30 143.0
38 TraesCS3B01G564900 chr4B 86.179 123 13 3 3868 3989 211982029 211982148 4.230000e-26 130.0
39 TraesCS3B01G564900 chr4A 92.982 114 4 1 584 693 646986478 646986591 4.170000e-36 163.0
40 TraesCS3B01G564900 chr4A 93.814 97 5 1 3900 3995 743442948 743443044 1.510000e-30 145.0
41 TraesCS3B01G564900 chr4A 100.000 28 0 0 4279 4306 242896653 242896626 9.000000e-03 52.8
42 TraesCS3B01G564900 chr4A 100.000 28 0 0 4279 4306 459666392 459666365 9.000000e-03 52.8
43 TraesCS3B01G564900 chr1B 91.736 121 5 2 578 693 674876250 674876130 4.170000e-36 163.0
44 TraesCS3B01G564900 chr1B 89.831 118 11 1 468 584 5931781 5931664 3.250000e-32 150.0
45 TraesCS3B01G564900 chr6B 89.844 128 8 2 584 707 164883031 164882905 5.400000e-35 159.0
46 TraesCS3B01G564900 chr5B 91.525 118 6 1 583 696 608625091 608624974 5.400000e-35 159.0
47 TraesCS3B01G564900 chr5B 91.525 118 6 1 584 697 653004892 653004775 5.400000e-35 159.0
48 TraesCS3B01G564900 chr5B 89.147 129 9 2 574 697 711999258 711999386 6.990000e-34 156.0
49 TraesCS3B01G564900 chr5B 95.699 93 4 0 3902 3994 184285351 184285259 3.250000e-32 150.0
50 TraesCS3B01G564900 chr5B 93.137 102 4 2 3897 3996 670524504 670524604 4.200000e-31 147.0
51 TraesCS3B01G564900 chr5B 88.889 117 12 1 468 583 625135287 625135171 5.440000e-30 143.0
52 TraesCS3B01G564900 chr5B 88.889 117 12 1 468 583 628725941 628725825 5.440000e-30 143.0
53 TraesCS3B01G564900 chrUn 93.939 99 3 2 3900 3996 35125967 35125870 4.200000e-31 147.0
54 TraesCS3B01G564900 chr2A 92.000 100 8 0 3904 4003 35964135 35964036 1.960000e-29 141.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G564900 chr3B 797642020 797647229 5209 True 3285.333333 9622 97.2220 1 5210 3 chr3B.!!$R3 5209
1 TraesCS3B01G564900 chr3B 797218820 797219708 888 False 294.000000 294 74.0900 3003 3842 1 chr3B.!!$F2 839
2 TraesCS3B01G564900 chr3A 724898861 724904191 5330 True 1143.233333 3947 93.3545 1 5206 6 chr3A.!!$R2 5205
3 TraesCS3B01G564900 chr2B 350303940 350304696 756 False 802.000000 802 86.2920 4459 5200 1 chr2B.!!$F1 741
4 TraesCS3B01G564900 chr3D 594177922 594178879 957 False 473.000000 473 76.8060 2945 3867 1 chr3D.!!$F2 922

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
689 736 0.032813 AGTAATTCCGGACGGAGGGA 60.033 55.0 13.64 0.0 46.06 4.20 F
1489 1909 0.042731 TACAGAGCAGTAAGGGGGCT 59.957 55.0 0.00 0.0 41.35 5.19 F
1510 1930 0.026803 GAGCGTCATGTCAAATCGGC 59.973 55.0 0.00 0.0 0.00 5.54 F
2089 2555 0.183014 TCGTACAAAGTTGGCCCCAA 59.817 50.0 0.00 0.0 0.00 4.12 F
3154 3648 0.868406 CCTGTGCGGAGAAAGACAAC 59.132 55.0 0.00 0.0 33.16 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1504 1924 0.171455 GAGACGACAGACAGCCGATT 59.829 55.000 0.00 0.0 0.00 3.34 R
3065 3543 1.406539 GCACATCTGCACCTATTTGGG 59.593 52.381 0.00 0.0 43.62 4.12 R
3333 3859 3.374988 TGCTAGCACTTGTATCATTGCAC 59.625 43.478 14.93 0.0 37.44 4.57 R
3615 4157 1.004918 ACACTTGCTGGGAGTACGC 60.005 57.895 0.00 0.0 0.00 4.42 R
5150 5719 0.343726 CCCTACTCCTCCCCCTTCTT 59.656 60.000 0.00 0.0 0.00 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 0.731514 TCCGCTCTTTCAAGTACGCG 60.732 55.000 3.53 3.53 37.70 6.01
95 96 3.007323 GGAACTGGTACCCGGCCT 61.007 66.667 10.07 0.00 32.02 5.19
97 98 1.988406 GAACTGGTACCCGGCCTCT 60.988 63.158 10.07 0.00 32.02 3.69
102 103 2.267961 GTACCCGGCCTCTGTTGG 59.732 66.667 0.00 0.00 0.00 3.77
103 104 2.203877 TACCCGGCCTCTGTTGGT 60.204 61.111 0.00 0.02 0.00 3.67
116 117 3.552384 TTGGTTCCTCGTGCCCGT 61.552 61.111 0.00 0.00 35.01 5.28
117 118 3.818121 TTGGTTCCTCGTGCCCGTG 62.818 63.158 0.00 0.00 35.01 4.94
147 148 2.126307 CACACGAGGACGCCTGAG 60.126 66.667 2.98 0.75 43.96 3.35
148 149 2.597805 ACACGAGGACGCCTGAGT 60.598 61.111 2.98 1.32 43.96 3.41
170 171 2.125106 GGCACAAGTAGCCCGGAG 60.125 66.667 0.73 0.00 46.50 4.63
255 256 3.241530 AGGCCACGCTCCTCACAA 61.242 61.111 5.01 0.00 0.00 3.33
256 257 2.743928 GGCCACGCTCCTCACAAG 60.744 66.667 0.00 0.00 0.00 3.16
259 260 2.743928 CACGCTCCTCACAAGGGC 60.744 66.667 0.00 0.00 43.56 5.19
260 261 3.241530 ACGCTCCTCACAAGGGCA 61.242 61.111 0.00 0.00 43.56 5.36
303 328 1.164411 CGCAAGAATACCAAGGCACA 58.836 50.000 0.00 0.00 43.02 4.57
310 335 6.170506 CAAGAATACCAAGGCACACTTACTA 58.829 40.000 0.00 0.00 37.29 1.82
386 411 2.825836 CCCACCATGCGAAGGAGC 60.826 66.667 0.00 0.00 37.71 4.70
399 426 4.228567 GGAGCAGCCGCCTACTCC 62.229 72.222 0.00 0.00 42.81 3.85
400 427 3.151022 GAGCAGCCGCCTACTCCT 61.151 66.667 0.00 0.00 39.83 3.69
422 449 2.912025 CTTGCGGGCCAAAGGTGT 60.912 61.111 4.39 0.00 31.94 4.16
463 490 3.775654 CGGCTCCACCTCCACCTC 61.776 72.222 0.00 0.00 35.61 3.85
465 492 2.607750 GCTCCACCTCCACCTCCA 60.608 66.667 0.00 0.00 0.00 3.86
494 541 3.341629 ATGGTGGAGGGGCACAGG 61.342 66.667 0.00 0.00 0.00 4.00
592 639 8.669946 TGTTTTATTTTTGTTTTCCCTCCATC 57.330 30.769 0.00 0.00 0.00 3.51
593 640 7.717436 TGTTTTATTTTTGTTTTCCCTCCATCC 59.283 33.333 0.00 0.00 0.00 3.51
594 641 4.535526 ATTTTTGTTTTCCCTCCATCCG 57.464 40.909 0.00 0.00 0.00 4.18
596 643 2.961531 TTGTTTTCCCTCCATCCGAA 57.038 45.000 0.00 0.00 0.00 4.30
597 644 2.961531 TGTTTTCCCTCCATCCGAAA 57.038 45.000 0.00 0.00 0.00 3.46
598 645 3.231207 TGTTTTCCCTCCATCCGAAAA 57.769 42.857 0.00 0.00 34.11 2.29
599 646 3.773560 TGTTTTCCCTCCATCCGAAAAT 58.226 40.909 0.00 0.00 37.69 1.82
600 647 4.924625 TGTTTTCCCTCCATCCGAAAATA 58.075 39.130 0.00 0.00 37.69 1.40
601 648 4.703093 TGTTTTCCCTCCATCCGAAAATAC 59.297 41.667 0.00 0.00 37.69 1.89
602 649 4.855298 TTTCCCTCCATCCGAAAATACT 57.145 40.909 0.00 0.00 0.00 2.12
603 650 4.855298 TTCCCTCCATCCGAAAATACTT 57.145 40.909 0.00 0.00 0.00 2.24
604 651 5.961398 TTCCCTCCATCCGAAAATACTTA 57.039 39.130 0.00 0.00 0.00 2.24
605 652 6.509523 TTCCCTCCATCCGAAAATACTTAT 57.490 37.500 0.00 0.00 0.00 1.73
606 653 6.110411 TCCCTCCATCCGAAAATACTTATC 57.890 41.667 0.00 0.00 0.00 1.75
607 654 5.605069 TCCCTCCATCCGAAAATACTTATCA 59.395 40.000 0.00 0.00 0.00 2.15
608 655 6.272324 TCCCTCCATCCGAAAATACTTATCAT 59.728 38.462 0.00 0.00 0.00 2.45
609 656 6.942576 CCCTCCATCCGAAAATACTTATCATT 59.057 38.462 0.00 0.00 0.00 2.57
610 657 7.094634 CCCTCCATCCGAAAATACTTATCATTG 60.095 40.741 0.00 0.00 0.00 2.82
611 658 7.661437 CCTCCATCCGAAAATACTTATCATTGA 59.339 37.037 0.00 0.00 0.00 2.57
612 659 8.972458 TCCATCCGAAAATACTTATCATTGAA 57.028 30.769 0.00 0.00 0.00 2.69
613 660 9.402320 TCCATCCGAAAATACTTATCATTGAAA 57.598 29.630 0.00 0.00 0.00 2.69
658 705 9.685276 AGTTCTACATACATCAATTTTCATCCA 57.315 29.630 0.00 0.00 0.00 3.41
678 725 8.469200 TCATCCATTTTGATGACAAGTAATTCC 58.531 33.333 0.00 0.00 44.65 3.01
679 726 6.851609 TCCATTTTGATGACAAGTAATTCCG 58.148 36.000 0.00 0.00 37.32 4.30
680 727 6.035843 CCATTTTGATGACAAGTAATTCCGG 58.964 40.000 0.00 0.00 37.32 5.14
681 728 6.127758 CCATTTTGATGACAAGTAATTCCGGA 60.128 38.462 0.00 0.00 37.32 5.14
682 729 5.873179 TTTGATGACAAGTAATTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
683 730 3.517602 TGATGACAAGTAATTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
684 731 2.373540 TGACAAGTAATTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
685 732 1.894466 TGACAAGTAATTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
686 733 2.094390 TGACAAGTAATTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
687 734 1.206371 ACAAGTAATTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
688 735 0.828677 AAGTAATTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
689 736 0.032813 AGTAATTCCGGACGGAGGGA 60.033 55.000 13.64 0.00 46.06 4.20
690 737 0.388294 GTAATTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
691 738 0.032813 TAATTCCGGACGGAGGGAGT 60.033 55.000 13.64 1.45 46.06 3.85
692 739 0.032813 AATTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
693 740 0.467659 ATTCCGGACGGAGGGAGTAG 60.468 60.000 13.64 0.00 46.06 2.57
694 741 1.856539 TTCCGGACGGAGGGAGTAGT 61.857 60.000 13.64 0.00 46.06 2.73
695 742 0.982852 TCCGGACGGAGGGAGTAGTA 60.983 60.000 9.76 0.00 39.76 1.82
696 743 0.110104 CCGGACGGAGGGAGTAGTAT 59.890 60.000 4.40 0.00 37.50 2.12
725 772 2.668457 GCAGTGTCCGACAATGAACTAG 59.332 50.000 28.32 5.42 46.01 2.57
768 815 3.101209 CGGTGCAATGGTGATCCG 58.899 61.111 0.00 0.00 36.65 4.18
783 830 1.386525 ATCCGGCATGTTGATGGTGC 61.387 55.000 0.00 0.00 38.12 5.01
801 848 3.498397 GGTGCTTATACATAGCGTTGCAT 59.502 43.478 0.00 0.00 41.54 3.96
815 862 1.201414 GTTGCATAGGTTTGGGGTTCG 59.799 52.381 0.00 0.00 0.00 3.95
839 886 1.729470 CGAGGGACGTGGATGAGGAG 61.729 65.000 0.00 0.00 37.22 3.69
840 887 1.381872 AGGGACGTGGATGAGGAGG 60.382 63.158 0.00 0.00 0.00 4.30
841 888 1.381327 GGGACGTGGATGAGGAGGA 60.381 63.158 0.00 0.00 0.00 3.71
849 896 3.369471 CGTGGATGAGGAGGAAGCTAAAA 60.369 47.826 0.00 0.00 0.00 1.52
859 906 6.302269 AGGAGGAAGCTAAAATATGATGTGG 58.698 40.000 0.00 0.00 0.00 4.17
860 907 5.048434 GGAGGAAGCTAAAATATGATGTGGC 60.048 44.000 0.00 0.00 0.00 5.01
862 909 4.829492 GGAAGCTAAAATATGATGTGGCCT 59.171 41.667 3.32 0.00 0.00 5.19
863 910 6.003950 GGAAGCTAAAATATGATGTGGCCTA 58.996 40.000 3.32 0.00 0.00 3.93
904 1203 0.676782 AAATTGGAACGAGAGGGCGG 60.677 55.000 0.00 0.00 35.12 6.13
948 1247 8.478775 AATTAATGGTATTTCCCTAAAGAGGC 57.521 34.615 0.00 0.00 42.21 4.70
956 1255 0.984230 CCCTAAAGAGGCCTGTGTGA 59.016 55.000 12.00 0.00 42.21 3.58
958 1257 1.339151 CCTAAAGAGGCCTGTGTGACC 60.339 57.143 12.00 0.00 35.54 4.02
960 1259 2.397413 AAAGAGGCCTGTGTGACCGG 62.397 60.000 12.00 0.00 0.00 5.28
961 1260 3.311110 GAGGCCTGTGTGACCGGA 61.311 66.667 12.00 0.00 0.00 5.14
962 1261 2.847234 AGGCCTGTGTGACCGGAA 60.847 61.111 9.46 0.00 0.00 4.30
963 1262 2.112297 GGCCTGTGTGACCGGAAA 59.888 61.111 9.46 0.00 0.00 3.13
1009 1390 2.398554 CCCACTTCAATGGCGACCG 61.399 63.158 0.00 0.00 38.55 4.79
1061 1448 3.139077 CGGATCTGGCAATAGGTAAACC 58.861 50.000 0.00 0.00 0.00 3.27
1064 1451 4.385310 GGATCTGGCAATAGGTAAACCACT 60.385 45.833 1.26 0.00 38.89 4.00
1065 1452 5.163237 GGATCTGGCAATAGGTAAACCACTA 60.163 44.000 1.26 0.00 38.89 2.74
1066 1453 5.093849 TCTGGCAATAGGTAAACCACTAC 57.906 43.478 1.26 0.00 38.89 2.73
1117 1504 2.182842 GCTGCCGTGGATCATCACC 61.183 63.158 0.00 0.00 34.36 4.02
1122 1509 2.588877 GTGGATCATCACCGGCCG 60.589 66.667 21.04 21.04 0.00 6.13
1194 1581 2.439883 GGGTACGAGAGGCGAGGT 60.440 66.667 0.00 0.00 44.57 3.85
1196 1583 1.139095 GGTACGAGAGGCGAGGTTG 59.861 63.158 0.00 0.00 44.57 3.77
1205 1592 0.396435 AGGCGAGGTTGAACATGTGA 59.604 50.000 0.00 0.00 0.00 3.58
1206 1593 0.517316 GGCGAGGTTGAACATGTGAC 59.483 55.000 0.00 0.00 0.00 3.67
1207 1594 1.512926 GCGAGGTTGAACATGTGACT 58.487 50.000 0.00 0.00 0.00 3.41
1210 1597 1.537202 GAGGTTGAACATGTGACTGGC 59.463 52.381 0.00 0.00 0.00 4.85
1211 1598 0.238289 GGTTGAACATGTGACTGGCG 59.762 55.000 0.00 0.00 0.00 5.69
1212 1599 0.238289 GTTGAACATGTGACTGGCGG 59.762 55.000 0.00 0.00 0.00 6.13
1214 1601 3.027170 GAACATGTGACTGGCGGCG 62.027 63.158 0.51 0.51 0.00 6.46
1241 1650 2.224281 TGGCAACATTGTCTCTTCTCGT 60.224 45.455 0.00 0.00 46.17 4.18
1242 1651 2.808543 GGCAACATTGTCTCTTCTCGTT 59.191 45.455 0.00 0.00 0.00 3.85
1244 1653 3.743396 GCAACATTGTCTCTTCTCGTTCT 59.257 43.478 0.00 0.00 0.00 3.01
1246 1655 3.827625 ACATTGTCTCTTCTCGTTCTCG 58.172 45.455 0.00 0.00 38.55 4.04
1247 1656 3.502595 ACATTGTCTCTTCTCGTTCTCGA 59.497 43.478 0.00 0.00 44.12 4.04
1248 1657 4.023107 ACATTGTCTCTTCTCGTTCTCGAA 60.023 41.667 0.00 0.00 45.61 3.71
1249 1658 3.539431 TGTCTCTTCTCGTTCTCGAAC 57.461 47.619 0.00 0.00 45.61 3.95
1293 1702 7.009907 GCGATTACCTAAAGTTGTCGTCTTTAT 59.990 37.037 0.00 0.00 36.96 1.40
1294 1703 8.866956 CGATTACCTAAAGTTGTCGTCTTTATT 58.133 33.333 0.00 0.00 36.96 1.40
1297 1706 7.572502 ACCTAAAGTTGTCGTCTTTATTACG 57.427 36.000 0.00 0.00 41.64 3.18
1338 1747 4.760047 GCGCCGGTCTCATGTGGT 62.760 66.667 1.90 0.00 0.00 4.16
1339 1748 2.815211 CGCCGGTCTCATGTGGTG 60.815 66.667 1.90 0.00 0.00 4.17
1340 1749 2.436646 GCCGGTCTCATGTGGTGG 60.437 66.667 1.90 0.00 0.00 4.61
1341 1750 2.268920 CCGGTCTCATGTGGTGGG 59.731 66.667 0.00 0.00 0.00 4.61
1342 1751 2.290287 CCGGTCTCATGTGGTGGGA 61.290 63.158 0.00 0.00 34.02 4.37
1343 1752 1.676968 CGGTCTCATGTGGTGGGAA 59.323 57.895 0.00 0.00 39.57 3.97
1344 1753 0.673644 CGGTCTCATGTGGTGGGAAC 60.674 60.000 0.00 0.00 41.93 3.62
1399 1808 2.274104 GACCCCGGCCATTAGCAA 59.726 61.111 2.24 0.00 46.50 3.91
1451 1871 0.298707 CCGAGCGTCATGTCAAATCG 59.701 55.000 0.00 0.00 0.00 3.34
1456 1876 1.078709 CGTCATGTCAAATCGGCTGT 58.921 50.000 0.00 0.00 0.00 4.40
1457 1877 1.061131 CGTCATGTCAAATCGGCTGTC 59.939 52.381 0.00 0.00 0.00 3.51
1458 1878 2.350522 GTCATGTCAAATCGGCTGTCT 58.649 47.619 0.00 0.00 0.00 3.41
1459 1879 2.094894 GTCATGTCAAATCGGCTGTCTG 59.905 50.000 0.00 0.00 0.00 3.51
1460 1880 2.079158 CATGTCAAATCGGCTGTCTGT 58.921 47.619 0.00 0.00 0.00 3.41
1461 1881 1.795768 TGTCAAATCGGCTGTCTGTC 58.204 50.000 0.00 0.00 0.00 3.51
1462 1882 0.716108 GTCAAATCGGCTGTCTGTCG 59.284 55.000 0.00 0.00 46.47 4.35
1463 1883 0.317160 TCAAATCGGCTGTCTGTCGT 59.683 50.000 3.58 0.00 45.15 4.34
1464 1884 0.716108 CAAATCGGCTGTCTGTCGTC 59.284 55.000 3.58 0.00 45.15 4.20
1465 1885 0.603569 AAATCGGCTGTCTGTCGTCT 59.396 50.000 3.58 0.00 45.15 4.18
1466 1886 0.171455 AATCGGCTGTCTGTCGTCTC 59.829 55.000 3.58 0.00 45.15 3.36
1467 1887 1.983196 ATCGGCTGTCTGTCGTCTCG 61.983 60.000 3.58 0.00 45.15 4.04
1468 1888 2.955402 GGCTGTCTGTCGTCTCGT 59.045 61.111 0.00 0.00 0.00 4.18
1469 1889 1.154188 GGCTGTCTGTCGTCTCGTC 60.154 63.158 0.00 0.00 0.00 4.20
1470 1890 1.579084 GGCTGTCTGTCGTCTCGTCT 61.579 60.000 0.00 0.00 0.00 4.18
1471 1891 1.077123 GCTGTCTGTCGTCTCGTCTA 58.923 55.000 0.00 0.00 0.00 2.59
1472 1892 1.201943 GCTGTCTGTCGTCTCGTCTAC 60.202 57.143 0.00 0.00 0.00 2.59
1473 1893 2.067013 CTGTCTGTCGTCTCGTCTACA 58.933 52.381 0.00 0.00 0.00 2.74
1474 1894 2.067013 TGTCTGTCGTCTCGTCTACAG 58.933 52.381 0.00 0.00 40.54 2.74
1475 1895 2.288640 TGTCTGTCGTCTCGTCTACAGA 60.289 50.000 0.00 0.00 44.47 3.41
1476 1896 2.346244 GTCTGTCGTCTCGTCTACAGAG 59.654 54.545 10.71 0.00 46.54 3.35
1477 1897 1.061421 CTGTCGTCTCGTCTACAGAGC 59.939 57.143 0.00 0.00 41.47 4.09
1478 1898 1.077123 GTCGTCTCGTCTACAGAGCA 58.923 55.000 0.00 0.00 35.79 4.26
1479 1899 1.061421 GTCGTCTCGTCTACAGAGCAG 59.939 57.143 0.00 0.00 35.79 4.24
1480 1900 1.080298 CGTCTCGTCTACAGAGCAGT 58.920 55.000 0.00 0.00 35.79 4.40
1481 1901 2.094338 TCGTCTCGTCTACAGAGCAGTA 60.094 50.000 0.00 0.00 35.79 2.74
1482 1902 2.671888 CGTCTCGTCTACAGAGCAGTAA 59.328 50.000 0.00 0.00 35.79 2.24
1483 1903 3.242155 CGTCTCGTCTACAGAGCAGTAAG 60.242 52.174 0.00 0.00 35.79 2.34
1484 1904 3.064271 GTCTCGTCTACAGAGCAGTAAGG 59.936 52.174 0.00 0.00 35.79 2.69
1485 1905 2.356382 CTCGTCTACAGAGCAGTAAGGG 59.644 54.545 0.00 0.00 0.00 3.95
1486 1906 1.405821 CGTCTACAGAGCAGTAAGGGG 59.594 57.143 0.00 0.00 0.00 4.79
1487 1907 1.757699 GTCTACAGAGCAGTAAGGGGG 59.242 57.143 0.00 0.00 0.00 5.40
1488 1908 0.466124 CTACAGAGCAGTAAGGGGGC 59.534 60.000 0.00 0.00 0.00 5.80
1489 1909 0.042731 TACAGAGCAGTAAGGGGGCT 59.957 55.000 0.00 0.00 41.35 5.19
1490 1910 0.842467 ACAGAGCAGTAAGGGGGCTT 60.842 55.000 0.00 0.00 38.15 4.35
1491 1911 0.393537 CAGAGCAGTAAGGGGGCTTG 60.394 60.000 0.00 0.00 38.15 4.01
1492 1912 0.547712 AGAGCAGTAAGGGGGCTTGA 60.548 55.000 0.00 0.00 38.15 3.02
1493 1913 0.107459 GAGCAGTAAGGGGGCTTGAG 60.107 60.000 0.00 0.00 38.15 3.02
1494 1914 1.750780 GCAGTAAGGGGGCTTGAGC 60.751 63.158 0.00 0.00 41.14 4.26
1495 1915 1.450312 CAGTAAGGGGGCTTGAGCG 60.450 63.158 0.00 0.00 43.26 5.03
1496 1916 1.918800 AGTAAGGGGGCTTGAGCGT 60.919 57.895 0.00 0.00 43.26 5.07
1497 1917 1.449778 GTAAGGGGGCTTGAGCGTC 60.450 63.158 0.00 0.00 43.26 5.19
1498 1918 1.916273 TAAGGGGGCTTGAGCGTCA 60.916 57.895 0.00 0.00 43.26 4.35
1499 1919 1.271840 TAAGGGGGCTTGAGCGTCAT 61.272 55.000 0.00 0.00 43.26 3.06
1500 1920 2.825836 GGGGGCTTGAGCGTCATG 60.826 66.667 0.00 0.00 43.26 3.07
1501 1921 2.045926 GGGGCTTGAGCGTCATGT 60.046 61.111 0.00 0.00 43.26 3.21
1502 1922 2.109126 GGGGCTTGAGCGTCATGTC 61.109 63.158 0.00 0.00 43.26 3.06
1503 1923 1.375908 GGGCTTGAGCGTCATGTCA 60.376 57.895 0.00 0.00 43.26 3.58
1504 1924 0.955428 GGGCTTGAGCGTCATGTCAA 60.955 55.000 0.00 0.00 43.26 3.18
1505 1925 0.874390 GGCTTGAGCGTCATGTCAAA 59.126 50.000 0.00 0.00 43.26 2.69
1506 1926 1.470098 GGCTTGAGCGTCATGTCAAAT 59.530 47.619 0.00 0.00 43.26 2.32
1507 1927 2.476854 GGCTTGAGCGTCATGTCAAATC 60.477 50.000 0.00 0.00 43.26 2.17
1508 1928 2.785681 GCTTGAGCGTCATGTCAAATCG 60.786 50.000 0.00 0.00 32.36 3.34
1509 1929 1.358877 TGAGCGTCATGTCAAATCGG 58.641 50.000 0.00 0.00 0.00 4.18
1510 1930 0.026803 GAGCGTCATGTCAAATCGGC 59.973 55.000 0.00 0.00 0.00 5.54
1511 1931 0.391661 AGCGTCATGTCAAATCGGCT 60.392 50.000 0.00 0.00 0.00 5.52
1512 1932 0.247814 GCGTCATGTCAAATCGGCTG 60.248 55.000 0.00 0.00 0.00 4.85
1513 1933 1.078709 CGTCATGTCAAATCGGCTGT 58.921 50.000 0.00 0.00 0.00 4.40
1514 1934 1.061131 CGTCATGTCAAATCGGCTGTC 59.939 52.381 0.00 0.00 0.00 3.51
1515 1935 2.350522 GTCATGTCAAATCGGCTGTCT 58.649 47.619 0.00 0.00 0.00 3.41
1516 1936 2.094894 GTCATGTCAAATCGGCTGTCTG 59.905 50.000 0.00 0.00 0.00 3.51
1517 1937 2.079158 CATGTCAAATCGGCTGTCTGT 58.921 47.619 0.00 0.00 0.00 3.41
1518 1938 1.795768 TGTCAAATCGGCTGTCTGTC 58.204 50.000 0.00 0.00 0.00 3.51
1519 1939 0.716108 GTCAAATCGGCTGTCTGTCG 59.284 55.000 0.00 0.00 46.47 4.35
1520 1940 0.317160 TCAAATCGGCTGTCTGTCGT 59.683 50.000 3.58 0.00 45.15 4.34
1521 1941 0.716108 CAAATCGGCTGTCTGTCGTC 59.284 55.000 3.58 0.00 45.15 4.20
1566 1996 1.059098 TGAGCTCCATGTCCAACAGT 58.941 50.000 12.15 0.00 0.00 3.55
1567 1997 1.421268 TGAGCTCCATGTCCAACAGTT 59.579 47.619 12.15 0.00 0.00 3.16
1568 1998 2.158623 TGAGCTCCATGTCCAACAGTTT 60.159 45.455 12.15 0.00 0.00 2.66
1572 2002 3.679389 CTCCATGTCCAACAGTTTAGCT 58.321 45.455 0.00 0.00 0.00 3.32
1574 2004 3.327757 TCCATGTCCAACAGTTTAGCTCT 59.672 43.478 0.00 0.00 0.00 4.09
1580 2010 5.773680 TGTCCAACAGTTTAGCTCTACTAGT 59.226 40.000 0.00 0.00 30.79 2.57
1582 2012 5.773680 TCCAACAGTTTAGCTCTACTAGTGT 59.226 40.000 5.39 0.00 30.79 3.55
1583 2013 6.267014 TCCAACAGTTTAGCTCTACTAGTGTT 59.733 38.462 5.39 0.00 34.16 3.32
1584 2014 6.366332 CCAACAGTTTAGCTCTACTAGTGTTG 59.634 42.308 19.51 19.51 42.09 3.33
1585 2015 6.651975 ACAGTTTAGCTCTACTAGTGTTGT 57.348 37.500 5.39 0.00 30.79 3.32
1587 2017 8.350852 ACAGTTTAGCTCTACTAGTGTTGTAT 57.649 34.615 5.39 0.00 30.79 2.29
1588 2018 8.804204 ACAGTTTAGCTCTACTAGTGTTGTATT 58.196 33.333 5.39 0.00 30.79 1.89
1589 2019 9.077674 CAGTTTAGCTCTACTAGTGTTGTATTG 57.922 37.037 5.39 0.00 30.79 1.90
1591 2021 5.923733 AGCTCTACTAGTGTTGTATTGCT 57.076 39.130 5.39 1.38 0.00 3.91
1593 2023 6.797454 AGCTCTACTAGTGTTGTATTGCTAC 58.203 40.000 5.39 0.00 31.66 3.58
1594 2024 6.603997 AGCTCTACTAGTGTTGTATTGCTACT 59.396 38.462 5.39 0.00 31.66 2.57
1596 2026 7.760340 GCTCTACTAGTGTTGTATTGCTACTTT 59.240 37.037 5.39 0.00 0.00 2.66
1602 2059 7.113704 AGTGTTGTATTGCTACTTTTACGAC 57.886 36.000 0.00 0.00 32.11 4.34
1617 2074 8.127150 ACTTTTACGACTAGTATAAACTGGGT 57.873 34.615 10.08 6.13 38.47 4.51
1629 2086 2.614134 AACTGGGTACTCTGCTCTCT 57.386 50.000 0.00 0.00 0.00 3.10
1632 2089 1.748493 CTGGGTACTCTGCTCTCTCAC 59.252 57.143 0.00 0.00 0.00 3.51
1633 2090 0.736053 GGGTACTCTGCTCTCTCACG 59.264 60.000 0.00 0.00 0.00 4.35
1662 2119 3.733337 AGGAGAAACACACTCACATCAC 58.267 45.455 0.00 0.00 36.26 3.06
1689 2155 6.041637 ACAGTTTAGATGAAGGCGTCCATATA 59.958 38.462 0.00 0.00 0.00 0.86
1699 2165 4.887748 AGGCGTCCATATAAAGATCAGTG 58.112 43.478 0.00 0.00 0.00 3.66
1700 2166 3.997021 GGCGTCCATATAAAGATCAGTGG 59.003 47.826 0.00 0.00 0.00 4.00
1765 2231 6.058183 CCTGCTACTAGGTCAGCAAATTTAT 58.942 40.000 14.45 0.00 46.55 1.40
1767 2233 6.649155 TGCTACTAGGTCAGCAAATTTATCA 58.351 36.000 12.03 0.00 44.49 2.15
1874 2340 3.562176 CCCAAGATCTAAGTGCCCTTTGT 60.562 47.826 0.00 0.00 31.89 2.83
1875 2341 4.082125 CCAAGATCTAAGTGCCCTTTGTT 58.918 43.478 0.00 0.00 31.89 2.83
1876 2342 5.253330 CCAAGATCTAAGTGCCCTTTGTTA 58.747 41.667 0.00 0.00 31.89 2.41
1877 2343 5.710099 CCAAGATCTAAGTGCCCTTTGTTAA 59.290 40.000 0.00 0.00 31.89 2.01
1887 2353 4.684242 GTGCCCTTTGTTAATTTACTGCAC 59.316 41.667 0.00 0.00 38.60 4.57
1896 2362 8.475331 TTGTTAATTTACTGCACTCTACTAGC 57.525 34.615 0.00 0.00 0.00 3.42
1897 2363 7.837863 TGTTAATTTACTGCACTCTACTAGCT 58.162 34.615 0.00 0.00 0.00 3.32
1898 2364 8.963725 TGTTAATTTACTGCACTCTACTAGCTA 58.036 33.333 0.00 0.00 0.00 3.32
1899 2365 9.453325 GTTAATTTACTGCACTCTACTAGCTAG 57.547 37.037 19.44 19.44 0.00 3.42
1992 2458 2.378445 TCGCAATTCGAGGACAATCA 57.622 45.000 0.00 0.00 43.16 2.57
2005 2471 7.331026 TCGAGGACAATCAAAGAGAACATTAT 58.669 34.615 0.00 0.00 0.00 1.28
2010 2476 9.956720 GGACAATCAAAGAGAACATTATATTGG 57.043 33.333 0.00 0.00 0.00 3.16
2061 2527 4.272504 TCGACAACAGTGAAATGAAGTTCC 59.727 41.667 0.00 0.00 0.00 3.62
2084 2550 1.226746 AGTGCTCGTACAAAGTTGGC 58.773 50.000 0.00 0.00 0.00 4.52
2089 2555 0.183014 TCGTACAAAGTTGGCCCCAA 59.817 50.000 0.00 0.00 0.00 4.12
2090 2556 1.202952 TCGTACAAAGTTGGCCCCAAT 60.203 47.619 0.00 0.00 38.28 3.16
2091 2557 1.201414 CGTACAAAGTTGGCCCCAATC 59.799 52.381 0.00 0.00 38.28 2.67
2129 2595 1.973812 GAGGGGTGCTGCAAGTTCC 60.974 63.158 2.77 0.34 35.30 3.62
2173 2639 1.100463 TTTGTCAGAGCTTTGGCGCA 61.100 50.000 10.83 0.00 44.37 6.09
2207 2673 7.806014 GCTATCCAAGTTGAAAATTACGTCAAA 59.194 33.333 3.87 0.00 35.60 2.69
2357 2823 7.680442 TTTGCTTTACACTCTGCAACATATA 57.320 32.000 0.00 0.00 43.74 0.86
2358 2824 7.864108 TTGCTTTACACTCTGCAACATATAT 57.136 32.000 0.00 0.00 39.98 0.86
2359 2825 8.956533 TTGCTTTACACTCTGCAACATATATA 57.043 30.769 0.00 0.00 39.98 0.86
2360 2826 9.559732 TTGCTTTACACTCTGCAACATATATAT 57.440 29.630 0.00 0.00 39.98 0.86
2440 2906 4.098914 TGCAAGTCTGGTGGAAAGTATT 57.901 40.909 0.00 0.00 0.00 1.89
2584 3053 6.710597 AAGTCCTTAAAACAGAAAACTCCC 57.289 37.500 0.00 0.00 0.00 4.30
2665 3134 8.704668 AGTTTGGTTTTCAGGTTTTGAATAGAT 58.295 29.630 0.00 0.00 44.90 1.98
2666 3135 9.974980 GTTTGGTTTTCAGGTTTTGAATAGATA 57.025 29.630 0.00 0.00 44.90 1.98
2668 3137 9.581289 TTGGTTTTCAGGTTTTGAATAGATAGA 57.419 29.630 0.00 0.00 44.90 1.98
2775 3244 5.083389 TGAATATTTCGTGCTACGCAAAAC 58.917 37.500 4.15 0.00 41.47 2.43
2791 3260 5.089396 GCAAAACAATTAAATTGGTGCGT 57.911 34.783 0.00 0.00 39.78 5.24
2792 3261 4.903016 GCAAAACAATTAAATTGGTGCGTG 59.097 37.500 0.00 0.00 39.78 5.34
2793 3262 4.723879 AAACAATTAAATTGGTGCGTGC 57.276 36.364 0.00 0.00 39.78 5.34
2794 3263 2.323959 ACAATTAAATTGGTGCGTGCG 58.676 42.857 0.00 0.00 44.42 5.34
2846 3315 2.443887 AAACATGCGCATTTTGCTCT 57.556 40.000 22.81 2.40 42.25 4.09
2974 3443 7.753309 TTAGCACCAAATTGTGTACAAGTAT 57.247 32.000 0.00 0.00 39.47 2.12
3005 3478 5.743636 AGTATTGCCACAATCCATGTTTT 57.256 34.783 0.00 0.00 41.46 2.43
3007 3480 6.165577 AGTATTGCCACAATCCATGTTTTTC 58.834 36.000 0.00 0.00 41.46 2.29
3034 3510 4.344102 AGTTCCTGCACAGTTCTTGTAGTA 59.656 41.667 0.00 0.00 38.16 1.82
3065 3543 4.224370 TGTGGGGAAATTACTGGAGTAGAC 59.776 45.833 0.00 0.00 0.00 2.59
3107 3601 4.559300 GCATTTTCCATGTGCAAGTACTGT 60.559 41.667 0.00 0.00 38.68 3.55
3154 3648 0.868406 CCTGTGCGGAGAAAGACAAC 59.132 55.000 0.00 0.00 33.16 3.32
3313 3839 3.605634 GGTTTGTTCAAGTGCCCTTTTT 58.394 40.909 0.00 0.00 0.00 1.94
3349 3883 5.112220 AGTGTTGTGCAATGATACAAGTG 57.888 39.130 4.22 0.00 37.46 3.16
3483 4025 2.816672 TGCTTTGAACGCCATAATGTCA 59.183 40.909 0.00 0.00 0.00 3.58
3615 4157 3.118408 TGGGTTTCTCATGGAATCCTACG 60.118 47.826 16.85 0.00 41.30 3.51
3846 4391 2.412089 GTGAGCGAGCGATTTAAGTTGT 59.588 45.455 0.00 0.00 0.00 3.32
3869 4414 1.051008 TCATGTGTCTGTGCCTCTGT 58.949 50.000 0.00 0.00 0.00 3.41
3914 4459 8.890410 TTTACAGTATTAACTACTCCCTCTGT 57.110 34.615 0.00 0.00 38.68 3.41
3915 4460 9.979897 TTTACAGTATTAACTACTCCCTCTGTA 57.020 33.333 0.00 0.00 38.68 2.74
3916 4461 9.979897 TTACAGTATTAACTACTCCCTCTGTAA 57.020 33.333 0.00 0.00 38.68 2.41
3917 4462 8.890410 ACAGTATTAACTACTCCCTCTGTAAA 57.110 34.615 0.00 0.00 38.68 2.01
3918 4463 8.968969 ACAGTATTAACTACTCCCTCTGTAAAG 58.031 37.037 0.00 0.00 38.68 1.85
3919 4464 9.186837 CAGTATTAACTACTCCCTCTGTAAAGA 57.813 37.037 0.00 0.00 38.68 2.52
3920 4465 9.765295 AGTATTAACTACTCCCTCTGTAAAGAA 57.235 33.333 0.00 0.00 35.73 2.52
3930 4475 8.425703 ACTCCCTCTGTAAAGAAATATAAGAGC 58.574 37.037 0.00 0.00 0.00 4.09
3931 4476 8.319057 TCCCTCTGTAAAGAAATATAAGAGCA 57.681 34.615 0.00 0.00 0.00 4.26
3932 4477 8.938883 TCCCTCTGTAAAGAAATATAAGAGCAT 58.061 33.333 0.00 0.00 0.00 3.79
3933 4478 9.566432 CCCTCTGTAAAGAAATATAAGAGCATT 57.434 33.333 0.00 0.00 0.00 3.56
3981 4526 8.943909 AAACACTCTTATATTTCCTTACGGAG 57.056 34.615 0.00 0.00 41.25 4.63
3983 4528 6.041751 ACACTCTTATATTTCCTTACGGAGGG 59.958 42.308 7.19 0.00 46.31 4.30
3984 4529 6.267014 CACTCTTATATTTCCTTACGGAGGGA 59.733 42.308 0.00 0.00 46.31 4.20
3985 4530 6.494146 ACTCTTATATTTCCTTACGGAGGGAG 59.506 42.308 0.00 2.13 46.31 4.30
3986 4531 6.379579 TCTTATATTTCCTTACGGAGGGAGT 58.620 40.000 0.00 0.00 46.31 3.85
3987 4532 7.529555 TCTTATATTTCCTTACGGAGGGAGTA 58.470 38.462 0.00 0.00 46.31 2.59
4020 4565 5.163416 CCAAATGGTGAACAAAGTCCTCTTT 60.163 40.000 0.00 0.00 43.66 2.52
4090 4635 9.442047 AATTCAGTTGGATGTTGTTTTGTTAAA 57.558 25.926 0.00 0.00 0.00 1.52
4098 4643 7.281774 TGGATGTTGTTTTGTTAAACGTACCTA 59.718 33.333 0.00 0.00 45.29 3.08
4217 4762 2.634940 CCGGATCAGGATAGGTTGACAT 59.365 50.000 5.91 0.00 0.00 3.06
4218 4763 3.555795 CCGGATCAGGATAGGTTGACATG 60.556 52.174 5.91 0.00 0.00 3.21
4235 4780 5.280164 TGACATGTGTATTTGTGCTTGTTG 58.720 37.500 1.15 0.00 0.00 3.33
4277 4824 8.200120 TGTACTACTCTAGTGATTTAGACGCTA 58.800 37.037 0.00 0.00 39.81 4.26
4278 4825 7.718272 ACTACTCTAGTGATTTAGACGCTAG 57.282 40.000 0.00 0.00 44.68 3.42
4279 4826 5.427036 ACTCTAGTGATTTAGACGCTAGC 57.573 43.478 4.06 4.06 43.69 3.42
4280 4827 5.127491 ACTCTAGTGATTTAGACGCTAGCT 58.873 41.667 13.93 0.00 43.69 3.32
4311 4858 4.090090 TCTTTCCAGAGGGAGTACTTCAG 58.910 47.826 2.92 0.00 46.01 3.02
4323 4870 3.603532 AGTACTTCAGTGACATGGCATG 58.396 45.455 25.31 25.31 0.00 4.06
4324 4871 2.865119 ACTTCAGTGACATGGCATGA 57.135 45.000 32.74 9.75 0.00 3.07
4325 4872 3.361281 ACTTCAGTGACATGGCATGAT 57.639 42.857 32.74 17.23 0.00 2.45
4326 4873 3.276857 ACTTCAGTGACATGGCATGATC 58.723 45.455 32.74 23.87 0.00 2.92
4327 4874 1.944032 TCAGTGACATGGCATGATCG 58.056 50.000 32.74 15.65 0.00 3.69
4328 4875 0.306840 CAGTGACATGGCATGATCGC 59.693 55.000 32.74 27.27 0.00 4.58
4329 4876 1.156034 AGTGACATGGCATGATCGCG 61.156 55.000 32.74 0.00 0.00 5.87
4330 4877 1.888638 TGACATGGCATGATCGCGG 60.889 57.895 32.74 5.81 0.00 6.46
4331 4878 3.245948 GACATGGCATGATCGCGGC 62.246 63.158 32.74 1.90 0.00 6.53
4332 4879 3.281395 CATGGCATGATCGCGGCA 61.281 61.111 22.91 11.99 42.39 5.69
4333 4880 2.281970 ATGGCATGATCGCGGCAT 60.282 55.556 15.03 15.03 42.97 4.40
4334 4881 1.003476 ATGGCATGATCGCGGCATA 60.003 52.632 18.12 0.00 45.59 3.14
4335 4882 1.300971 ATGGCATGATCGCGGCATAC 61.301 55.000 18.12 5.41 45.59 2.39
4336 4883 2.680913 GGCATGATCGCGGCATACC 61.681 63.158 6.13 11.15 0.00 2.73
4337 4884 1.960763 GCATGATCGCGGCATACCA 60.961 57.895 6.13 0.00 34.57 3.25
4338 4885 1.300971 GCATGATCGCGGCATACCAT 61.301 55.000 6.13 0.00 34.57 3.55
4339 4886 0.445043 CATGATCGCGGCATACCATG 59.555 55.000 6.13 7.49 34.57 3.66
4340 4887 0.321346 ATGATCGCGGCATACCATGA 59.679 50.000 6.13 0.00 34.57 3.07
4341 4888 0.321346 TGATCGCGGCATACCATGAT 59.679 50.000 6.13 0.00 33.35 2.45
4342 4889 1.002366 GATCGCGGCATACCATGATC 58.998 55.000 6.13 0.00 38.40 2.92
4442 4989 4.026052 AGGGGCAAAAGATTTACCTCATG 58.974 43.478 0.00 0.00 0.00 3.07
4463 5010 6.204495 TCATGCATTAATTAAGCATCGCTGTA 59.796 34.615 21.87 8.34 46.39 2.74
4469 5016 4.836125 ATTAAGCATCGCTGTATTTGGG 57.164 40.909 0.00 0.00 39.62 4.12
4476 5023 0.447801 CGCTGTATTTGGGTGTCTGC 59.552 55.000 0.00 0.00 0.00 4.26
4507 5054 5.285134 CGCCTACGTATTTTGAATTGGTTTG 59.715 40.000 0.00 0.00 33.53 2.93
4645 5192 5.981315 GGATGTCAAACTATGGAATTGCATG 59.019 40.000 21.41 13.58 0.00 4.06
4672 5219 7.677276 GCAACATCAGTATAGACATCAAACCAC 60.677 40.741 0.00 0.00 0.00 4.16
4951 5506 0.384669 GGGAATGAGAGCTTGCATGC 59.615 55.000 16.37 16.37 0.00 4.06
4971 5526 2.724454 CCCGACAAAGAGGAGTAGAGA 58.276 52.381 0.00 0.00 0.00 3.10
4995 5550 2.258748 GAAGGGGAAGAAGAGGGGCG 62.259 65.000 0.00 0.00 0.00 6.13
4996 5551 3.009714 GGGGAAGAAGAGGGGCGT 61.010 66.667 0.00 0.00 0.00 5.68
4997 5552 2.603652 GGGGAAGAAGAGGGGCGTT 61.604 63.158 0.00 0.00 0.00 4.84
4999 5554 1.377333 GGAAGAAGAGGGGCGTTGG 60.377 63.158 0.00 0.00 0.00 3.77
5000 5555 1.677552 GAAGAAGAGGGGCGTTGGA 59.322 57.895 0.00 0.00 0.00 3.53
5002 5557 2.436824 GAAGAGGGGCGTTGGAGC 60.437 66.667 0.00 0.00 0.00 4.70
5003 5558 3.249189 AAGAGGGGCGTTGGAGCA 61.249 61.111 0.00 0.00 39.27 4.26
5004 5559 2.543067 GAAGAGGGGCGTTGGAGCAT 62.543 60.000 0.00 0.00 39.27 3.79
5005 5560 2.825836 GAGGGGCGTTGGAGCATG 60.826 66.667 0.00 0.00 39.27 4.06
5094 5663 0.980423 GGCAGAAGAGAAGGACTGGT 59.020 55.000 0.00 0.00 0.00 4.00
5165 5737 1.501654 GGCAAAGAAGGGGGAGGAGT 61.502 60.000 0.00 0.00 0.00 3.85
5206 5778 2.283529 GCACGGGAAGAGTGGAGGA 61.284 63.158 0.00 0.00 39.80 3.71
5207 5779 1.592223 CACGGGAAGAGTGGAGGAC 59.408 63.158 0.00 0.00 36.06 3.85
5208 5780 1.609794 ACGGGAAGAGTGGAGGACC 60.610 63.158 0.00 0.00 0.00 4.46
5209 5781 1.609501 CGGGAAGAGTGGAGGACCA 60.610 63.158 0.00 0.00 44.76 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 3.665675 CTGGAGCTGTACACCGGGC 62.666 68.421 6.32 0.00 32.04 6.13
17 18 2.125512 CGGCTGGAGCTGTACACC 60.126 66.667 0.00 0.00 42.29 4.16
39 40 1.420312 GCCGCGTACTTGAAAGAGC 59.580 57.895 4.92 0.00 0.00 4.09
55 56 2.930562 AGAGAGTGGTGGTGGGCC 60.931 66.667 0.00 0.00 0.00 5.80
92 93 0.951040 CACGAGGAACCAACAGAGGC 60.951 60.000 0.00 0.00 0.00 4.70
95 96 1.070786 GGCACGAGGAACCAACAGA 59.929 57.895 0.00 0.00 0.00 3.41
97 98 2.112297 GGGCACGAGGAACCAACA 59.888 61.111 0.00 0.00 0.00 3.33
144 145 1.270839 GCTACTTGTGCCTTGGACTCA 60.271 52.381 0.00 0.00 0.00 3.41
147 148 2.556286 GGCTACTTGTGCCTTGGAC 58.444 57.895 0.00 0.00 46.38 4.02
177 178 2.681778 CTCTCCCTCGCCCACTGT 60.682 66.667 0.00 0.00 0.00 3.55
223 224 1.372748 GCCTCAGGATCGATCAGCG 60.373 63.158 25.93 13.62 42.69 5.18
255 256 4.521062 GCGCATCGTCTCTGCCCT 62.521 66.667 0.30 0.00 36.24 5.19
303 328 3.610911 GGCAACTTGATGGCTAGTAAGT 58.389 45.455 0.00 0.00 42.22 2.24
310 335 1.589716 GCTTCGGCAACTTGATGGCT 61.590 55.000 0.00 0.00 43.23 4.75
330 355 1.600916 GCCTCCTTGTTTGCCTCGT 60.601 57.895 0.00 0.00 0.00 4.18
372 397 2.437359 GCTGCTCCTTCGCATGGT 60.437 61.111 0.00 0.00 39.52 3.55
386 411 1.742768 CCTAAGGAGTAGGCGGCTG 59.257 63.158 23.55 1.21 43.22 4.85
422 449 2.641305 GTCAGGTCGGAGTTAGAGCTA 58.359 52.381 0.00 0.00 43.63 3.32
463 490 1.079405 ACCATGTAGGCGTCGTTGG 60.079 57.895 0.00 0.09 43.14 3.77
465 492 1.079405 CCACCATGTAGGCGTCGTT 60.079 57.895 0.00 0.00 43.14 3.85
503 550 3.782443 CCCTTCCCCTTCCGGTCG 61.782 72.222 0.00 0.00 0.00 4.79
584 631 5.865085 TGATAAGTATTTTCGGATGGAGGG 58.135 41.667 0.00 0.00 0.00 4.30
585 632 7.661437 TCAATGATAAGTATTTTCGGATGGAGG 59.339 37.037 0.00 0.00 0.00 4.30
586 633 8.607441 TCAATGATAAGTATTTTCGGATGGAG 57.393 34.615 0.00 0.00 0.00 3.86
632 679 9.685276 TGGATGAAAATTGATGTATGTAGAACT 57.315 29.630 0.00 0.00 0.00 3.01
653 700 7.433131 CGGAATTACTTGTCATCAAAATGGATG 59.567 37.037 0.00 0.00 44.78 3.51
654 701 7.416664 CCGGAATTACTTGTCATCAAAATGGAT 60.417 37.037 0.00 0.00 33.42 3.41
655 702 6.127758 CCGGAATTACTTGTCATCAAAATGGA 60.128 38.462 0.00 0.00 33.42 3.41
656 703 6.035843 CCGGAATTACTTGTCATCAAAATGG 58.964 40.000 0.00 0.00 33.42 3.16
657 704 6.747280 GTCCGGAATTACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
658 705 6.403200 CGTCCGGAATTACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
659 706 5.106869 CGTCCGGAATTACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
660 707 4.390603 CGTCCGGAATTACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
661 708 3.930229 CGTCCGGAATTACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
662 709 3.517602 CGTCCGGAATTACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
663 710 2.864343 CCGTCCGGAATTACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
664 711 2.498481 TCCGTCCGGAATTACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
665 712 1.894466 TCCGTCCGGAATTACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
666 713 2.537401 CTCCGTCCGGAATTACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
667 714 1.206371 CCTCCGTCCGGAATTACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
668 715 1.472728 CCCTCCGTCCGGAATTACTTG 60.473 57.143 5.23 0.00 44.66 3.16
669 716 0.828677 CCCTCCGTCCGGAATTACTT 59.171 55.000 5.23 0.00 44.66 2.24
670 717 0.032813 TCCCTCCGTCCGGAATTACT 60.033 55.000 5.23 0.00 44.66 2.24
671 718 0.388294 CTCCCTCCGTCCGGAATTAC 59.612 60.000 5.23 0.00 44.66 1.89
672 719 0.032813 ACTCCCTCCGTCCGGAATTA 60.033 55.000 5.23 0.00 44.66 1.40
673 720 0.032813 TACTCCCTCCGTCCGGAATT 60.033 55.000 5.23 0.00 44.66 2.17
674 721 0.467659 CTACTCCCTCCGTCCGGAAT 60.468 60.000 5.23 0.00 44.66 3.01
675 722 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
676 723 0.982852 TACTACTCCCTCCGTCCGGA 60.983 60.000 0.00 0.00 42.90 5.14
677 724 0.110104 ATACTACTCCCTCCGTCCGG 59.890 60.000 0.00 0.00 0.00 5.14
678 725 1.607628 CAATACTACTCCCTCCGTCCG 59.392 57.143 0.00 0.00 0.00 4.79
679 726 1.340568 GCAATACTACTCCCTCCGTCC 59.659 57.143 0.00 0.00 0.00 4.79
680 727 2.029623 TGCAATACTACTCCCTCCGTC 58.970 52.381 0.00 0.00 0.00 4.79
681 728 2.154567 TGCAATACTACTCCCTCCGT 57.845 50.000 0.00 0.00 0.00 4.69
682 729 3.753294 AATGCAATACTACTCCCTCCG 57.247 47.619 0.00 0.00 0.00 4.63
683 730 3.565902 GCAAATGCAATACTACTCCCTCC 59.434 47.826 0.00 0.00 41.59 4.30
684 731 4.820284 GCAAATGCAATACTACTCCCTC 57.180 45.455 0.00 0.00 41.59 4.30
707 754 3.850273 CGTACTAGTTCATTGTCGGACAC 59.150 47.826 10.97 0.00 0.00 3.67
711 758 4.730657 AGTTCGTACTAGTTCATTGTCGG 58.269 43.478 0.00 0.00 31.21 4.79
725 772 4.628766 GGACAAAAGGACCATAGTTCGTAC 59.371 45.833 0.00 0.00 0.00 3.67
768 815 3.631686 TGTATAAGCACCATCAACATGCC 59.368 43.478 0.00 0.00 40.33 4.40
783 830 7.290842 CAAACCTATGCAACGCTATGTATAAG 58.709 38.462 0.00 0.00 29.32 1.73
801 848 1.481772 CGTATCCGAACCCCAAACCTA 59.518 52.381 0.00 0.00 35.63 3.08
839 886 4.829492 AGGCCACATCATATTTTAGCTTCC 59.171 41.667 5.01 0.00 0.00 3.46
840 887 7.510549 TTAGGCCACATCATATTTTAGCTTC 57.489 36.000 5.01 0.00 0.00 3.86
841 888 7.725397 TCATTAGGCCACATCATATTTTAGCTT 59.275 33.333 5.01 0.00 0.00 3.74
849 896 7.177184 TGCTAAATCATTAGGCCACATCATAT 58.823 34.615 5.01 0.00 39.17 1.78
859 906 4.993905 ACGGTTTTGCTAAATCATTAGGC 58.006 39.130 4.79 0.00 39.17 3.93
860 907 7.087639 TCAAACGGTTTTGCTAAATCATTAGG 58.912 34.615 2.79 0.00 41.78 2.69
862 909 8.873215 TTTCAAACGGTTTTGCTAAATCATTA 57.127 26.923 2.79 0.00 41.78 1.90
863 910 7.778470 TTTCAAACGGTTTTGCTAAATCATT 57.222 28.000 2.79 0.00 41.78 2.57
940 1239 0.320374 CGGTCACACAGGCCTCTTTA 59.680 55.000 0.00 0.00 40.99 1.85
944 1243 2.391724 TTTCCGGTCACACAGGCCTC 62.392 60.000 0.00 0.00 40.99 4.70
948 1247 0.393077 AGAGTTTCCGGTCACACAGG 59.607 55.000 0.00 0.00 34.60 4.00
956 1255 2.490991 CGGAGAAAAAGAGTTTCCGGT 58.509 47.619 0.00 0.00 45.20 5.28
960 1259 1.197036 CGGCCGGAGAAAAAGAGTTTC 59.803 52.381 20.10 0.00 0.00 2.78
961 1260 1.235724 CGGCCGGAGAAAAAGAGTTT 58.764 50.000 20.10 0.00 0.00 2.66
962 1261 1.235281 GCGGCCGGAGAAAAAGAGTT 61.235 55.000 29.38 0.00 0.00 3.01
963 1262 1.671379 GCGGCCGGAGAAAAAGAGT 60.671 57.895 29.38 0.00 0.00 3.24
991 1372 2.398554 CGGTCGCCATTGAAGTGGG 61.399 63.158 0.00 0.00 39.73 4.61
1009 1390 1.450312 CGAGATGAGGGTTGGTGGC 60.450 63.158 0.00 0.00 0.00 5.01
1047 1434 5.250982 ACAAGTAGTGGTTTACCTATTGCC 58.749 41.667 0.00 0.00 36.82 4.52
1061 1448 4.972440 GCAAGAAAGCAAGAACAAGTAGTG 59.028 41.667 0.00 0.00 0.00 2.74
1064 1451 4.640201 ACTGCAAGAAAGCAAGAACAAGTA 59.360 37.500 0.00 0.00 45.13 2.24
1065 1452 3.445096 ACTGCAAGAAAGCAAGAACAAGT 59.555 39.130 0.00 0.00 45.13 3.16
1066 1453 4.037858 ACTGCAAGAAAGCAAGAACAAG 57.962 40.909 0.00 0.00 45.13 3.16
1167 1554 4.082523 TCGTACCCTGCAGGCTGC 62.083 66.667 31.91 31.91 45.29 5.25
1168 1555 2.185350 CTCGTACCCTGCAGGCTG 59.815 66.667 28.39 17.26 40.58 4.85
1169 1556 2.037367 TCTCGTACCCTGCAGGCT 59.963 61.111 28.39 17.23 40.58 4.58
1170 1557 2.496817 CTCTCGTACCCTGCAGGC 59.503 66.667 28.39 13.08 40.58 4.85
1171 1558 3.082579 GCCTCTCGTACCCTGCAGG 62.083 68.421 26.87 26.87 43.78 4.85
1180 1567 0.524862 GTTCAACCTCGCCTCTCGTA 59.475 55.000 0.00 0.00 39.67 3.43
1194 1581 1.514678 GCCGCCAGTCACATGTTCAA 61.515 55.000 0.00 0.00 0.00 2.69
1196 1583 2.870372 GCCGCCAGTCACATGTTC 59.130 61.111 0.00 0.00 0.00 3.18
1212 1599 3.694538 AATGTTGCCAAGGCCCGC 61.695 61.111 8.89 0.00 41.09 6.13
1214 1601 1.187567 AGACAATGTTGCCAAGGCCC 61.188 55.000 8.89 0.00 41.09 5.80
1221 1630 2.417719 ACGAGAAGAGACAATGTTGCC 58.582 47.619 0.00 0.00 0.00 4.52
1260 1669 3.795499 TTAGGTAATCGCCGGCGGC 62.795 63.158 44.95 39.60 46.75 6.53
1261 1670 1.219522 CTTTAGGTAATCGCCGGCGG 61.220 60.000 44.95 28.06 40.25 6.13
1262 1671 0.529119 ACTTTAGGTAATCGCCGGCG 60.529 55.000 42.13 42.13 41.35 6.46
1263 1672 1.329599 CAACTTTAGGTAATCGCCGGC 59.670 52.381 19.07 19.07 0.00 6.13
1264 1673 2.606272 GACAACTTTAGGTAATCGCCGG 59.394 50.000 0.00 0.00 0.00 6.13
1265 1674 2.280708 CGACAACTTTAGGTAATCGCCG 59.719 50.000 0.00 0.00 31.78 6.46
1266 1675 3.256558 ACGACAACTTTAGGTAATCGCC 58.743 45.455 0.00 0.00 38.31 5.54
1267 1676 4.171754 AGACGACAACTTTAGGTAATCGC 58.828 43.478 0.00 0.00 38.31 4.58
1293 1702 1.824658 CTAATGACCGGGGCCGTAA 59.175 57.895 6.32 0.00 37.81 3.18
1294 1703 2.799452 GCTAATGACCGGGGCCGTA 61.799 63.158 6.32 0.00 37.81 4.02
1295 1704 4.171103 GCTAATGACCGGGGCCGT 62.171 66.667 6.32 0.00 37.81 5.68
1297 1706 2.676163 AATCGCTAATGACCGGGGCC 62.676 60.000 6.32 0.00 0.00 5.80
1313 1722 2.202756 AGACCGGCGCGAGAAATC 60.203 61.111 12.10 0.00 0.00 2.17
1317 1726 4.193334 CATGAGACCGGCGCGAGA 62.193 66.667 12.10 0.00 0.00 4.04
1340 1749 3.391160 GAAAATCGCCGCCGGTTCC 62.391 63.158 4.45 0.00 36.64 3.62
1341 1750 2.099638 GAAAATCGCCGCCGGTTC 59.900 61.111 4.45 0.00 36.64 3.62
1342 1751 2.359478 AGAAAATCGCCGCCGGTT 60.359 55.556 4.45 0.00 40.01 4.44
1343 1752 2.818274 GAGAAAATCGCCGCCGGT 60.818 61.111 4.45 0.00 34.56 5.28
1344 1753 3.925238 CGAGAAAATCGCCGCCGG 61.925 66.667 0.00 0.00 45.98 6.13
1418 1838 3.569049 CTCGGTCCAAACTCGGCGT 62.569 63.158 6.85 0.00 0.00 5.68
1423 1843 0.389948 ATGACGCTCGGTCCAAACTC 60.390 55.000 0.00 0.00 45.46 3.01
1451 1871 1.154188 GACGAGACGACAGACAGCC 60.154 63.158 0.00 0.00 0.00 4.85
1456 1876 2.608268 CTCTGTAGACGAGACGACAGA 58.392 52.381 14.62 14.62 45.15 3.41
1457 1877 1.061421 GCTCTGTAGACGAGACGACAG 59.939 57.143 8.80 8.80 42.09 3.51
1458 1878 1.077123 GCTCTGTAGACGAGACGACA 58.923 55.000 0.00 0.00 0.00 4.35
1459 1879 1.061421 CTGCTCTGTAGACGAGACGAC 59.939 57.143 0.00 0.00 0.00 4.34
1460 1880 1.337917 ACTGCTCTGTAGACGAGACGA 60.338 52.381 0.00 0.00 0.00 4.20
1461 1881 1.080298 ACTGCTCTGTAGACGAGACG 58.920 55.000 0.00 0.00 0.00 4.18
1462 1882 3.064271 CCTTACTGCTCTGTAGACGAGAC 59.936 52.174 0.00 0.00 0.00 3.36
1463 1883 3.271729 CCTTACTGCTCTGTAGACGAGA 58.728 50.000 0.00 0.00 0.00 4.04
1464 1884 2.356382 CCCTTACTGCTCTGTAGACGAG 59.644 54.545 0.00 0.00 0.00 4.18
1465 1885 2.366533 CCCTTACTGCTCTGTAGACGA 58.633 52.381 0.00 0.00 0.00 4.20
1466 1886 1.405821 CCCCTTACTGCTCTGTAGACG 59.594 57.143 0.00 0.00 0.00 4.18
1467 1887 1.757699 CCCCCTTACTGCTCTGTAGAC 59.242 57.143 0.00 0.00 0.00 2.59
1468 1888 1.965318 GCCCCCTTACTGCTCTGTAGA 60.965 57.143 0.00 0.00 0.00 2.59
1469 1889 0.466124 GCCCCCTTACTGCTCTGTAG 59.534 60.000 0.00 0.00 0.00 2.74
1470 1890 0.042731 AGCCCCCTTACTGCTCTGTA 59.957 55.000 0.00 0.00 0.00 2.74
1471 1891 0.842467 AAGCCCCCTTACTGCTCTGT 60.842 55.000 0.00 0.00 33.36 3.41
1472 1892 0.393537 CAAGCCCCCTTACTGCTCTG 60.394 60.000 0.00 0.00 33.36 3.35
1473 1893 0.547712 TCAAGCCCCCTTACTGCTCT 60.548 55.000 0.00 0.00 33.36 4.09
1474 1894 0.107459 CTCAAGCCCCCTTACTGCTC 60.107 60.000 0.00 0.00 33.36 4.26
1475 1895 1.994463 CTCAAGCCCCCTTACTGCT 59.006 57.895 0.00 0.00 36.79 4.24
1476 1896 1.750780 GCTCAAGCCCCCTTACTGC 60.751 63.158 0.00 0.00 34.31 4.40
1477 1897 1.450312 CGCTCAAGCCCCCTTACTG 60.450 63.158 0.00 0.00 37.91 2.74
1478 1898 1.900545 GACGCTCAAGCCCCCTTACT 61.901 60.000 0.00 0.00 37.91 2.24
1479 1899 1.449778 GACGCTCAAGCCCCCTTAC 60.450 63.158 0.00 0.00 37.91 2.34
1480 1900 1.271840 ATGACGCTCAAGCCCCCTTA 61.272 55.000 0.00 0.00 37.91 2.69
1481 1901 2.606587 ATGACGCTCAAGCCCCCTT 61.607 57.895 0.00 0.00 37.91 3.95
1482 1902 3.011517 ATGACGCTCAAGCCCCCT 61.012 61.111 0.00 0.00 37.91 4.79
1483 1903 2.825836 CATGACGCTCAAGCCCCC 60.826 66.667 0.00 0.00 37.91 5.40
1484 1904 2.045926 ACATGACGCTCAAGCCCC 60.046 61.111 0.00 0.00 37.91 5.80
1485 1905 0.955428 TTGACATGACGCTCAAGCCC 60.955 55.000 0.00 0.00 37.91 5.19
1486 1906 0.874390 TTTGACATGACGCTCAAGCC 59.126 50.000 0.00 0.00 37.91 4.35
1487 1907 2.778659 GATTTGACATGACGCTCAAGC 58.221 47.619 0.00 0.00 37.78 4.01
1488 1908 2.222886 CCGATTTGACATGACGCTCAAG 60.223 50.000 0.00 0.00 0.00 3.02
1489 1909 1.731709 CCGATTTGACATGACGCTCAA 59.268 47.619 0.00 0.00 0.00 3.02
1490 1910 1.358877 CCGATTTGACATGACGCTCA 58.641 50.000 0.00 0.00 0.00 4.26
1491 1911 0.026803 GCCGATTTGACATGACGCTC 59.973 55.000 0.00 0.00 0.00 5.03
1492 1912 0.391661 AGCCGATTTGACATGACGCT 60.392 50.000 0.00 0.00 0.00 5.07
1493 1913 0.247814 CAGCCGATTTGACATGACGC 60.248 55.000 0.00 0.00 0.00 5.19
1494 1914 1.061131 GACAGCCGATTTGACATGACG 59.939 52.381 0.00 0.00 0.00 4.35
1495 1915 2.094894 CAGACAGCCGATTTGACATGAC 59.905 50.000 0.00 0.00 0.00 3.06
1496 1916 2.289631 ACAGACAGCCGATTTGACATGA 60.290 45.455 0.00 0.00 0.00 3.07
1497 1917 2.079158 ACAGACAGCCGATTTGACATG 58.921 47.619 0.00 0.00 0.00 3.21
1498 1918 2.350522 GACAGACAGCCGATTTGACAT 58.649 47.619 0.00 0.00 0.00 3.06
1499 1919 1.795768 GACAGACAGCCGATTTGACA 58.204 50.000 0.00 0.00 0.00 3.58
1500 1920 0.716108 CGACAGACAGCCGATTTGAC 59.284 55.000 0.00 0.00 0.00 3.18
1501 1921 0.317160 ACGACAGACAGCCGATTTGA 59.683 50.000 0.00 0.00 0.00 2.69
1502 1922 0.716108 GACGACAGACAGCCGATTTG 59.284 55.000 0.00 0.00 0.00 2.32
1503 1923 0.603569 AGACGACAGACAGCCGATTT 59.396 50.000 0.00 0.00 0.00 2.17
1504 1924 0.171455 GAGACGACAGACAGCCGATT 59.829 55.000 0.00 0.00 0.00 3.34
1505 1925 1.803943 GAGACGACAGACAGCCGAT 59.196 57.895 0.00 0.00 0.00 4.18
1506 1926 2.677979 CGAGACGACAGACAGCCGA 61.678 63.158 0.00 0.00 0.00 5.54
1507 1927 2.202362 CGAGACGACAGACAGCCG 60.202 66.667 0.00 0.00 0.00 5.52
1508 1928 1.154188 GACGAGACGACAGACAGCC 60.154 63.158 0.00 0.00 0.00 4.85
1509 1929 1.077123 TAGACGAGACGACAGACAGC 58.923 55.000 0.00 0.00 0.00 4.40
1510 1930 2.067013 TGTAGACGAGACGACAGACAG 58.933 52.381 0.00 0.00 0.00 3.51
1511 1931 2.067013 CTGTAGACGAGACGACAGACA 58.933 52.381 9.30 0.00 42.89 3.41
1512 1932 2.335752 TCTGTAGACGAGACGACAGAC 58.664 52.381 12.37 2.53 43.55 3.51
1513 1933 2.608268 CTCTGTAGACGAGACGACAGA 58.392 52.381 14.62 14.62 45.15 3.41
1514 1934 1.061421 GCTCTGTAGACGAGACGACAG 59.939 57.143 8.80 8.80 42.09 3.51
1515 1935 1.077123 GCTCTGTAGACGAGACGACA 58.923 55.000 0.00 0.00 0.00 4.35
1516 1936 1.061421 CTGCTCTGTAGACGAGACGAC 59.939 57.143 0.00 0.00 0.00 4.34
1517 1937 1.337917 ACTGCTCTGTAGACGAGACGA 60.338 52.381 0.00 0.00 0.00 4.20
1518 1938 1.080298 ACTGCTCTGTAGACGAGACG 58.920 55.000 0.00 0.00 0.00 4.18
1519 1939 3.064271 CCTTACTGCTCTGTAGACGAGAC 59.936 52.174 0.00 0.00 0.00 3.36
1520 1940 3.271729 CCTTACTGCTCTGTAGACGAGA 58.728 50.000 0.00 0.00 0.00 4.04
1521 1941 2.356382 CCCTTACTGCTCTGTAGACGAG 59.644 54.545 0.00 0.00 0.00 4.18
1557 1987 6.094061 CACTAGTAGAGCTAAACTGTTGGAC 58.906 44.000 3.59 0.00 0.00 4.02
1558 1988 5.773680 ACACTAGTAGAGCTAAACTGTTGGA 59.226 40.000 3.59 0.00 0.00 3.53
1566 1996 7.837863 AGCAATACAACACTAGTAGAGCTAAA 58.162 34.615 3.59 0.00 35.28 1.85
1567 1997 7.406031 AGCAATACAACACTAGTAGAGCTAA 57.594 36.000 3.59 0.00 35.28 3.09
1568 1998 7.774157 AGTAGCAATACAACACTAGTAGAGCTA 59.226 37.037 3.59 0.00 37.04 3.32
1574 2004 9.345517 CGTAAAAGTAGCAATACAACACTAGTA 57.654 33.333 0.00 0.00 0.00 1.82
1580 2010 8.084073 ACTAGTCGTAAAAGTAGCAATACAACA 58.916 33.333 0.00 0.00 0.00 3.33
1588 2018 9.778993 CAGTTTATACTAGTCGTAAAAGTAGCA 57.221 33.333 0.00 0.00 31.96 3.49
1589 2019 9.230932 CCAGTTTATACTAGTCGTAAAAGTAGC 57.769 37.037 0.00 0.00 31.96 3.58
1591 2021 9.243105 ACCCAGTTTATACTAGTCGTAAAAGTA 57.757 33.333 0.00 0.00 31.96 2.24
1593 2023 9.508567 GTACCCAGTTTATACTAGTCGTAAAAG 57.491 37.037 0.00 3.66 31.96 2.27
1594 2024 9.243105 AGTACCCAGTTTATACTAGTCGTAAAA 57.757 33.333 0.00 0.00 31.96 1.52
1596 2026 8.267894 AGAGTACCCAGTTTATACTAGTCGTAA 58.732 37.037 0.00 0.00 31.96 3.18
1602 2059 6.773685 AGAGCAGAGTACCCAGTTTATACTAG 59.226 42.308 0.00 0.00 31.96 2.57
1629 2086 1.000163 GTTTCTCCTCTGCACTCGTGA 60.000 52.381 0.39 0.00 0.00 4.35
1632 2089 1.269778 TGTGTTTCTCCTCTGCACTCG 60.270 52.381 0.00 0.00 0.00 4.18
1633 2090 2.139118 GTGTGTTTCTCCTCTGCACTC 58.861 52.381 0.00 0.00 0.00 3.51
1662 2119 4.113354 GGACGCCTTCATCTAAACTGTAG 58.887 47.826 0.00 0.00 0.00 2.74
1689 2155 6.213195 TGCCAAAAATAATCCCACTGATCTTT 59.787 34.615 0.00 0.00 31.61 2.52
1699 2165 8.829612 CAACAAGATAATGCCAAAAATAATCCC 58.170 33.333 0.00 0.00 0.00 3.85
1700 2166 9.598517 TCAACAAGATAATGCCAAAAATAATCC 57.401 29.630 0.00 0.00 0.00 3.01
1711 2177 8.706492 TGAATCAATTTCAACAAGATAATGCC 57.294 30.769 0.00 0.00 41.38 4.40
1729 2195 6.721318 ACCTAGTAGCAGGAAATTGAATCAA 58.279 36.000 0.00 0.00 39.18 2.57
1750 2216 9.158233 CAAAATTCATGATAAATTTGCTGACCT 57.842 29.630 0.00 0.00 36.65 3.85
1874 2340 9.404848 TCTAGCTAGTAGAGTGCAGTAAATTAA 57.595 33.333 20.10 0.00 32.36 1.40
1875 2341 8.975663 TCTAGCTAGTAGAGTGCAGTAAATTA 57.024 34.615 20.10 0.00 32.36 1.40
1876 2342 7.883391 TCTAGCTAGTAGAGTGCAGTAAATT 57.117 36.000 20.10 0.00 32.36 1.82
1877 2343 7.339721 TGTTCTAGCTAGTAGAGTGCAGTAAAT 59.660 37.037 20.10 0.00 39.05 1.40
1957 2423 8.616942 TCGAATTGCGATAAAAATCCTTAATGA 58.383 29.630 0.00 0.00 45.59 2.57
2005 2471 6.042638 GCTTCTCATCATAGCCTACCAATA 57.957 41.667 0.00 0.00 0.00 1.90
2061 2527 3.059597 CCAACTTTGTACGAGCACTTGAG 60.060 47.826 0.00 0.00 0.00 3.02
2084 2550 4.622260 AAACCTGTTGAATTGATTGGGG 57.378 40.909 0.00 0.00 0.00 4.96
2089 2555 7.123247 CCCTCTTGATAAACCTGTTGAATTGAT 59.877 37.037 0.00 0.00 0.00 2.57
2090 2556 6.434028 CCCTCTTGATAAACCTGTTGAATTGA 59.566 38.462 0.00 0.00 0.00 2.57
2091 2557 6.350445 CCCCTCTTGATAAACCTGTTGAATTG 60.350 42.308 0.00 0.00 0.00 2.32
2129 2595 2.503895 AGTCTGAAGCCCAATCCTTG 57.496 50.000 0.00 0.00 0.00 3.61
2173 2639 2.507058 TCAACTTGGATAGCAGCAGGAT 59.493 45.455 0.00 0.00 0.00 3.24
2584 3053 6.091305 CAGGTATCAAACATCCACGCATATAG 59.909 42.308 0.00 0.00 0.00 1.31
2665 3134 8.650490 TGAGCAAATTGTGTCATCCTATATCTA 58.350 33.333 0.00 0.00 0.00 1.98
2666 3135 7.512130 TGAGCAAATTGTGTCATCCTATATCT 58.488 34.615 0.00 0.00 0.00 1.98
2667 3136 7.734924 TGAGCAAATTGTGTCATCCTATATC 57.265 36.000 0.00 0.00 0.00 1.63
2668 3137 7.722728 ACATGAGCAAATTGTGTCATCCTATAT 59.277 33.333 0.00 0.00 30.37 0.86
2775 3244 2.341168 GTCGCACGCACCAATTTAATTG 59.659 45.455 10.46 10.46 39.94 2.32
2791 3260 2.691526 ACTATCCATCGTTTAGGTCGCA 59.308 45.455 0.00 0.00 0.00 5.10
2792 3261 3.366440 ACTATCCATCGTTTAGGTCGC 57.634 47.619 0.00 0.00 0.00 5.19
2793 3262 6.250344 TCATACTATCCATCGTTTAGGTCG 57.750 41.667 0.00 0.00 0.00 4.79
2794 3263 7.916450 GCTATCATACTATCCATCGTTTAGGTC 59.084 40.741 0.00 0.00 0.00 3.85
3034 3510 4.832823 CAGTAATTTCCCCACACCTTTTCT 59.167 41.667 0.00 0.00 0.00 2.52
3065 3543 1.406539 GCACATCTGCACCTATTTGGG 59.593 52.381 0.00 0.00 43.62 4.12
3107 3601 9.233649 CTAACATTTACCTGTACAAACCCAATA 57.766 33.333 0.00 0.00 0.00 1.90
3154 3648 5.812642 AGTTACTGGCTTTATCTGTTCATCG 59.187 40.000 0.00 0.00 0.00 3.84
3313 3839 8.856153 TTGCACAACACTCCTATATTTTAAGA 57.144 30.769 0.00 0.00 0.00 2.10
3333 3859 3.374988 TGCTAGCACTTGTATCATTGCAC 59.625 43.478 14.93 0.00 37.44 4.57
3483 4025 4.019231 GTCTCTACTTCCCTGGTTTGGATT 60.019 45.833 0.00 0.00 0.00 3.01
3615 4157 1.004918 ACACTTGCTGGGAGTACGC 60.005 57.895 0.00 0.00 0.00 4.42
3846 4391 4.256110 CAGAGGCACAGACACATGAATAA 58.744 43.478 0.00 0.00 0.00 1.40
3904 4449 8.425703 GCTCTTATATTTCTTTACAGAGGGAGT 58.574 37.037 0.00 0.00 0.00 3.85
3905 4450 8.424918 TGCTCTTATATTTCTTTACAGAGGGAG 58.575 37.037 0.00 0.00 0.00 4.30
3906 4451 8.319057 TGCTCTTATATTTCTTTACAGAGGGA 57.681 34.615 0.00 0.00 0.00 4.20
3907 4452 9.566432 AATGCTCTTATATTTCTTTACAGAGGG 57.434 33.333 0.00 0.00 0.00 4.30
3973 4518 7.571919 TGGATAGTATATACTCCCTCCGTAAG 58.428 42.308 18.68 0.00 37.73 2.34
3974 4519 7.515004 TGGATAGTATATACTCCCTCCGTAA 57.485 40.000 18.68 6.20 37.73 3.18
3975 4520 7.515004 TTGGATAGTATATACTCCCTCCGTA 57.485 40.000 18.68 11.98 37.73 4.02
3976 4521 6.398655 TTGGATAGTATATACTCCCTCCGT 57.601 41.667 18.68 0.00 37.73 4.69
3977 4522 7.201920 CCATTTGGATAGTATATACTCCCTCCG 60.202 44.444 18.68 10.23 36.08 4.63
3978 4523 7.624077 ACCATTTGGATAGTATATACTCCCTCC 59.376 40.741 18.68 20.40 36.87 4.30
3979 4524 8.478877 CACCATTTGGATAGTATATACTCCCTC 58.521 40.741 18.68 13.31 36.87 4.30
3980 4525 8.184249 TCACCATTTGGATAGTATATACTCCCT 58.816 37.037 18.68 5.56 36.87 4.20
3981 4526 8.375493 TCACCATTTGGATAGTATATACTCCC 57.625 38.462 18.68 19.32 36.87 4.30
3982 4527 9.654663 GTTCACCATTTGGATAGTATATACTCC 57.345 37.037 18.68 15.01 36.87 3.85
3987 4532 9.920946 ACTTTGTTCACCATTTGGATAGTATAT 57.079 29.630 3.01 0.00 38.94 0.86
4020 4565 5.538813 TCACTCAAGCTCCTACTTCAACTTA 59.461 40.000 0.00 0.00 0.00 2.24
4090 4635 3.015327 CAAGACTAGCCTGTAGGTACGT 58.985 50.000 0.00 0.00 37.57 3.57
4098 4643 0.413832 TCCCTCCAAGACTAGCCTGT 59.586 55.000 0.00 0.00 0.00 4.00
4136 4681 2.749621 GGCGACCAAACTTCAATCTGAT 59.250 45.455 0.00 0.00 0.00 2.90
4217 4762 2.223923 GCCCAACAAGCACAAATACACA 60.224 45.455 0.00 0.00 0.00 3.72
4218 4763 2.035832 AGCCCAACAAGCACAAATACAC 59.964 45.455 0.00 0.00 0.00 2.90
4235 4780 0.618458 TACATGGACTTGGACAGCCC 59.382 55.000 0.00 0.00 0.00 5.19
4277 4824 6.617371 TCCCTCTGGAAAGAAATATAAGAGCT 59.383 38.462 0.00 0.00 37.86 4.09
4278 4825 6.831976 TCCCTCTGGAAAGAAATATAAGAGC 58.168 40.000 0.00 0.00 37.86 4.09
4279 4826 8.028652 ACTCCCTCTGGAAAGAAATATAAGAG 57.971 38.462 0.00 0.00 41.17 2.85
4280 4827 7.996758 ACTCCCTCTGGAAAGAAATATAAGA 57.003 36.000 0.00 0.00 41.17 2.10
4311 4858 1.277739 CGCGATCATGCCATGTCAC 59.722 57.895 0.00 0.00 0.00 3.67
4323 4870 1.002366 GATCATGGTATGCCGCGATC 58.998 55.000 8.23 13.17 37.66 3.69
4324 4871 0.737367 CGATCATGGTATGCCGCGAT 60.737 55.000 8.23 3.85 37.67 4.58
4325 4872 1.372872 CGATCATGGTATGCCGCGA 60.373 57.895 8.23 0.00 37.67 5.87
4326 4873 3.015293 GCGATCATGGTATGCCGCG 62.015 63.158 0.00 0.00 40.20 6.46
4327 4874 2.863153 GCGATCATGGTATGCCGC 59.137 61.111 10.68 10.68 41.70 6.53
4328 4875 1.221466 AACGCGATCATGGTATGCCG 61.221 55.000 15.93 0.00 37.67 5.69
4329 4876 1.790755 TAACGCGATCATGGTATGCC 58.209 50.000 15.93 0.00 0.00 4.40
4330 4877 4.404507 AATTAACGCGATCATGGTATGC 57.595 40.909 15.93 0.00 0.00 3.14
4331 4878 6.015504 GCTTAATTAACGCGATCATGGTATG 58.984 40.000 15.93 0.00 0.00 2.39
4332 4879 5.121768 GGCTTAATTAACGCGATCATGGTAT 59.878 40.000 15.93 0.00 0.00 2.73
4333 4880 4.449743 GGCTTAATTAACGCGATCATGGTA 59.550 41.667 15.93 0.00 0.00 3.25
4334 4881 3.250040 GGCTTAATTAACGCGATCATGGT 59.750 43.478 15.93 0.00 0.00 3.55
4335 4882 3.498397 AGGCTTAATTAACGCGATCATGG 59.502 43.478 15.93 0.00 0.00 3.66
4336 4883 4.211164 TGAGGCTTAATTAACGCGATCATG 59.789 41.667 15.93 0.00 0.00 3.07
4337 4884 4.377021 TGAGGCTTAATTAACGCGATCAT 58.623 39.130 15.93 0.00 0.00 2.45
4338 4885 3.787785 TGAGGCTTAATTAACGCGATCA 58.212 40.909 15.93 14.71 0.00 2.92
4339 4886 4.270325 ACTTGAGGCTTAATTAACGCGATC 59.730 41.667 15.93 11.56 0.00 3.69
4340 4887 4.189231 ACTTGAGGCTTAATTAACGCGAT 58.811 39.130 15.93 2.34 0.00 4.58
4341 4888 3.592059 ACTTGAGGCTTAATTAACGCGA 58.408 40.909 15.93 0.00 0.00 5.87
4342 4889 5.006358 ACATACTTGAGGCTTAATTAACGCG 59.994 40.000 3.53 3.53 0.00 6.01
4442 4989 7.148918 CCAAATACAGCGATGCTTAATTAATGC 60.149 37.037 0.00 5.67 36.40 3.56
4463 5010 1.812571 GTCGAATGCAGACACCCAAAT 59.187 47.619 0.00 0.00 38.42 2.32
4469 5016 0.457853 TAGGCGTCGAATGCAGACAC 60.458 55.000 12.38 0.00 38.46 3.67
4507 5054 2.386661 TCCTCGCTGAATTGGAACTC 57.613 50.000 0.00 0.00 0.00 3.01
4645 5192 6.238484 GGTTTGATGTCTATACTGATGTTGCC 60.238 42.308 0.00 0.00 0.00 4.52
4653 5200 7.672983 AACTTGTGGTTTGATGTCTATACTG 57.327 36.000 0.00 0.00 33.90 2.74
4736 5283 5.649782 ATGTGATGTTGTCTTGGATTTCC 57.350 39.130 0.00 0.00 0.00 3.13
4951 5506 2.724454 TCTCTACTCCTCTTTGTCGGG 58.276 52.381 0.00 0.00 0.00 5.14
4971 5526 3.388913 CCCTCTTCTTCCCCTTCACTAT 58.611 50.000 0.00 0.00 0.00 2.12
4995 5550 0.842635 ATCTCCTCCCATGCTCCAAC 59.157 55.000 0.00 0.00 0.00 3.77
4996 5551 0.841961 CATCTCCTCCCATGCTCCAA 59.158 55.000 0.00 0.00 0.00 3.53
4997 5552 1.058428 CCATCTCCTCCCATGCTCCA 61.058 60.000 0.00 0.00 0.00 3.86
4999 5554 1.759881 CCCATCTCCTCCCATGCTC 59.240 63.158 0.00 0.00 0.00 4.26
5000 5555 1.773391 CCCCATCTCCTCCCATGCT 60.773 63.158 0.00 0.00 0.00 3.79
5002 5557 1.842007 CACCCCATCTCCTCCCATG 59.158 63.158 0.00 0.00 0.00 3.66
5003 5558 2.081161 GCACCCCATCTCCTCCCAT 61.081 63.158 0.00 0.00 0.00 4.00
5004 5559 2.692368 GCACCCCATCTCCTCCCA 60.692 66.667 0.00 0.00 0.00 4.37
5005 5560 2.692368 TGCACCCCATCTCCTCCC 60.692 66.667 0.00 0.00 0.00 4.30
5094 5663 2.063979 CACCACTATGCCTCCCCGA 61.064 63.158 0.00 0.00 0.00 5.14
5150 5719 0.343726 CCCTACTCCTCCCCCTTCTT 59.656 60.000 0.00 0.00 0.00 2.52
5191 5763 1.609501 TGGTCCTCCACTCTTCCCG 60.610 63.158 0.00 0.00 39.03 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.