Multiple sequence alignment - TraesCS3B01G564400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G564400 chr3B 100.000 2646 0 0 1 2646 797572452 797575097 0 4887
1 TraesCS3B01G564400 chr3B 97.991 448 7 1 2201 2646 797584440 797584887 0 776
2 TraesCS3B01G564400 chr3B 94.678 451 18 4 2202 2646 88132958 88132508 0 695
3 TraesCS3B01G564400 chr7A 98.137 2201 41 0 1 2201 60286001 60283801 0 3838
4 TraesCS3B01G564400 chrUn 98.046 2201 43 0 1 2201 186201715 186203915 0 3827
5 TraesCS3B01G564400 chr1A 98.046 2201 40 2 1 2201 498684525 498686722 0 3823
6 TraesCS3B01G564400 chr7B 98.001 2201 44 0 1 2201 742996151 742993951 0 3821
7 TraesCS3B01G564400 chr7B 97.955 2201 44 1 1 2201 716872076 716874275 0 3814
8 TraesCS3B01G564400 chr7B 95.100 449 18 3 2202 2646 60897807 60897359 0 704
9 TraesCS3B01G564400 chr4A 97.547 2201 54 0 1 2201 246681311 246679111 0 3766
10 TraesCS3B01G564400 chr5A 97.501 2201 55 0 1 2201 492862433 492860233 0 3760
11 TraesCS3B01G564400 chr2B 97.456 2201 56 0 1 2201 391167714 391165514 0 3755
12 TraesCS3B01G564400 chr2B 97.365 2201 56 1 1 2201 112847905 112845707 0 3742
13 TraesCS3B01G564400 chr2B 95.323 449 16 4 2202 2646 432533127 432532680 0 708
14 TraesCS3B01G564400 chr4B 95.991 449 15 2 2201 2646 125350937 125350489 0 726
15 TraesCS3B01G564400 chr4B 95.556 450 16 3 2201 2646 506219554 506220003 0 717
16 TraesCS3B01G564400 chr4B 94.866 448 20 2 2202 2646 125360865 125360418 0 697
17 TraesCS3B01G564400 chr4B 94.667 450 20 3 2201 2646 506197098 506197547 0 695
18 TraesCS3B01G564400 chr5B 94.866 448 17 4 2201 2643 649273117 649273563 0 695


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G564400 chr3B 797572452 797575097 2645 False 4887 4887 100.000 1 2646 1 chr3B.!!$F1 2645
1 TraesCS3B01G564400 chr7A 60283801 60286001 2200 True 3838 3838 98.137 1 2201 1 chr7A.!!$R1 2200
2 TraesCS3B01G564400 chrUn 186201715 186203915 2200 False 3827 3827 98.046 1 2201 1 chrUn.!!$F1 2200
3 TraesCS3B01G564400 chr1A 498684525 498686722 2197 False 3823 3823 98.046 1 2201 1 chr1A.!!$F1 2200
4 TraesCS3B01G564400 chr7B 742993951 742996151 2200 True 3821 3821 98.001 1 2201 1 chr7B.!!$R2 2200
5 TraesCS3B01G564400 chr7B 716872076 716874275 2199 False 3814 3814 97.955 1 2201 1 chr7B.!!$F1 2200
6 TraesCS3B01G564400 chr4A 246679111 246681311 2200 True 3766 3766 97.547 1 2201 1 chr4A.!!$R1 2200
7 TraesCS3B01G564400 chr5A 492860233 492862433 2200 True 3760 3760 97.501 1 2201 1 chr5A.!!$R1 2200
8 TraesCS3B01G564400 chr2B 391165514 391167714 2200 True 3755 3755 97.456 1 2201 1 chr2B.!!$R2 2200
9 TraesCS3B01G564400 chr2B 112845707 112847905 2198 True 3742 3742 97.365 1 2201 1 chr2B.!!$R1 2200

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
136 137 0.395312 GTCAAAGTTCGACAGGGGGA 59.605 55.0 0.0 0.0 33.43 4.81 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1856 1858 0.387878 GGATGGCAGCGATCGAGTAG 60.388 60.0 21.57 5.73 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 78 7.208080 TGAACAAGAAGGACAGTAACTAGAAC 58.792 38.462 0.00 0.00 0.00 3.01
136 137 0.395312 GTCAAAGTTCGACAGGGGGA 59.605 55.000 0.00 0.00 33.43 4.81
147 148 3.328343 TCGACAGGGGGAAAAATAGTTGA 59.672 43.478 0.00 0.00 0.00 3.18
198 199 1.679680 CAAGCCAGTGCCATCATTAGG 59.320 52.381 0.00 0.00 38.69 2.69
205 206 2.846206 AGTGCCATCATTAGGAAGTCCA 59.154 45.455 0.00 0.00 38.89 4.02
337 338 2.685897 TGACACCGCTTTGCTACTTTTT 59.314 40.909 0.00 0.00 0.00 1.94
348 349 6.756542 GCTTTGCTACTTTTTGAAAGAGGAAA 59.243 34.615 7.37 11.14 0.00 3.13
442 443 2.609737 CGAAGCTTTACGACCAAGGAGT 60.610 50.000 0.00 0.00 0.00 3.85
568 569 6.820656 GCTATGAAAAGAATTCTGGTCTCTCA 59.179 38.462 9.17 6.34 0.00 3.27
599 600 4.171005 GCATACTAATACGAGCCGCATAA 58.829 43.478 0.00 0.00 0.00 1.90
946 947 8.466865 CGTAAGGTACTAAAAACGAAAAACTG 57.533 34.615 0.00 0.00 38.49 3.16
1014 1015 3.825908 TTAAAGATGTGGCCTTCCCTT 57.174 42.857 3.32 0.00 0.00 3.95
1029 1030 5.380043 CCTTCCCTTCAAGCACATATATGT 58.620 41.667 12.75 12.75 42.84 2.29
1327 1329 5.890334 TCTTTTCGAACTGCACTTTGAAAT 58.110 33.333 17.21 0.00 34.75 2.17
1340 1342 5.742838 GCACTTTGAAATCCAAACCCAAGAT 60.743 40.000 0.00 0.00 39.65 2.40
1376 1378 7.296628 ACTACTCTCCAAATAGCAGGATAAG 57.703 40.000 0.00 0.00 32.53 1.73
1580 1582 1.527034 GCTCACATTCTGGCACTTCA 58.473 50.000 0.00 0.00 0.00 3.02
1651 1653 1.996191 GCAGGAGTGAATTGACTCGTC 59.004 52.381 15.93 5.42 42.97 4.20
1654 1656 3.862267 CAGGAGTGAATTGACTCGTCATC 59.138 47.826 15.93 4.10 42.97 2.92
1719 1721 2.380084 TCGGGACATGCTTCACTTAC 57.620 50.000 0.00 0.00 0.00 2.34
1839 1841 6.808704 AGGAAAGCGCAAAAGATTTCTATTTC 59.191 34.615 11.47 5.76 43.60 2.17
2050 2052 1.190178 GGAATACGGGCCCGGTAGAT 61.190 60.000 44.99 29.05 44.69 1.98
2065 2067 4.445879 CCGGTAGATATAGGGATGATCGGA 60.446 50.000 0.00 0.00 35.22 4.55
2201 2203 5.803470 GCTTGGGTCAGGATACAAAGTTACT 60.803 44.000 0.00 0.00 41.41 2.24
2202 2204 5.160607 TGGGTCAGGATACAAAGTTACTG 57.839 43.478 0.00 0.00 41.41 2.74
2203 2205 4.595781 TGGGTCAGGATACAAAGTTACTGT 59.404 41.667 0.00 0.00 41.41 3.55
2204 2206 4.935808 GGGTCAGGATACAAAGTTACTGTG 59.064 45.833 0.21 0.21 41.41 3.66
2205 2207 5.279809 GGGTCAGGATACAAAGTTACTGTGA 60.280 44.000 9.83 0.00 41.41 3.58
2206 2208 5.638234 GGTCAGGATACAAAGTTACTGTGAC 59.362 44.000 9.83 0.76 41.41 3.67
2207 2209 6.220930 GTCAGGATACAAAGTTACTGTGACA 58.779 40.000 9.83 0.00 41.41 3.58
2208 2210 6.145696 GTCAGGATACAAAGTTACTGTGACAC 59.854 42.308 9.83 0.00 41.41 3.67
2209 2211 5.408604 CAGGATACAAAGTTACTGTGACACC 59.591 44.000 9.83 8.63 41.41 4.16
2210 2212 5.071250 AGGATACAAAGTTACTGTGACACCA 59.929 40.000 9.83 0.00 41.41 4.17
2211 2213 5.761234 GGATACAAAGTTACTGTGACACCAA 59.239 40.000 9.83 0.00 0.00 3.67
2212 2214 6.261381 GGATACAAAGTTACTGTGACACCAAA 59.739 38.462 9.83 0.00 0.00 3.28
2213 2215 5.968528 ACAAAGTTACTGTGACACCAAAA 57.031 34.783 9.83 0.00 0.00 2.44
2214 2216 6.524101 ACAAAGTTACTGTGACACCAAAAT 57.476 33.333 9.83 0.00 0.00 1.82
2215 2217 6.930731 ACAAAGTTACTGTGACACCAAAATT 58.069 32.000 9.83 0.00 0.00 1.82
2216 2218 7.382898 ACAAAGTTACTGTGACACCAAAATTT 58.617 30.769 9.83 4.08 0.00 1.82
2217 2219 7.875554 ACAAAGTTACTGTGACACCAAAATTTT 59.124 29.630 9.83 0.00 0.00 1.82
2218 2220 8.716909 CAAAGTTACTGTGACACCAAAATTTTT 58.283 29.630 0.00 0.00 0.00 1.94
2219 2221 7.826260 AGTTACTGTGACACCAAAATTTTTG 57.174 32.000 13.76 13.76 0.00 2.44
2220 2222 7.382898 AGTTACTGTGACACCAAAATTTTTGT 58.617 30.769 18.05 7.77 0.00 2.83
2221 2223 7.330700 AGTTACTGTGACACCAAAATTTTTGTG 59.669 33.333 25.56 25.56 39.09 3.33
2222 2224 4.934602 ACTGTGACACCAAAATTTTTGTGG 59.065 37.500 28.65 18.89 37.92 4.17
2223 2225 4.899502 TGTGACACCAAAATTTTTGTGGT 58.100 34.783 28.65 19.44 46.72 4.16
2224 2226 5.308825 TGTGACACCAAAATTTTTGTGGTT 58.691 33.333 28.65 15.54 43.19 3.67
2225 2227 5.765182 TGTGACACCAAAATTTTTGTGGTTT 59.235 32.000 28.65 16.27 43.19 3.27
2226 2228 6.263168 TGTGACACCAAAATTTTTGTGGTTTT 59.737 30.769 28.65 14.70 43.19 2.43
2227 2229 7.142021 GTGACACCAAAATTTTTGTGGTTTTT 58.858 30.769 28.65 14.41 43.19 1.94
2228 2230 7.114106 GTGACACCAAAATTTTTGTGGTTTTTG 59.886 33.333 28.65 13.88 43.19 2.44
2229 2231 7.043961 ACACCAAAATTTTTGTGGTTTTTGT 57.956 28.000 28.65 14.37 43.19 2.83
2230 2232 7.492524 ACACCAAAATTTTTGTGGTTTTTGTT 58.507 26.923 28.65 10.79 43.19 2.83
2231 2233 7.981789 ACACCAAAATTTTTGTGGTTTTTGTTT 59.018 25.926 28.65 10.24 43.19 2.83
2232 2234 8.820933 CACCAAAATTTTTGTGGTTTTTGTTTT 58.179 25.926 21.62 0.00 43.19 2.43
2233 2235 9.035607 ACCAAAATTTTTGTGGTTTTTGTTTTC 57.964 25.926 18.05 0.00 43.19 2.29
2234 2236 9.034544 CCAAAATTTTTGTGGTTTTTGTTTTCA 57.965 25.926 18.05 0.00 37.36 2.69
2239 2241 9.676195 ATTTTTGTGGTTTTTGTTTTCAGAAAG 57.324 25.926 0.00 0.00 35.17 2.62
2240 2242 8.438676 TTTTGTGGTTTTTGTTTTCAGAAAGA 57.561 26.923 0.00 0.00 35.17 2.52
2241 2243 7.650834 TTGTGGTTTTTGTTTTCAGAAAGAG 57.349 32.000 0.00 0.00 35.17 2.85
2242 2244 5.637387 TGTGGTTTTTGTTTTCAGAAAGAGC 59.363 36.000 0.00 0.00 35.17 4.09
2243 2245 5.063438 GTGGTTTTTGTTTTCAGAAAGAGCC 59.937 40.000 0.00 0.00 35.17 4.70
2244 2246 5.046663 TGGTTTTTGTTTTCAGAAAGAGCCT 60.047 36.000 0.00 0.00 35.17 4.58
2245 2247 5.874810 GGTTTTTGTTTTCAGAAAGAGCCTT 59.125 36.000 0.00 0.00 35.17 4.35
2246 2248 6.183360 GGTTTTTGTTTTCAGAAAGAGCCTTG 60.183 38.462 0.00 0.00 35.17 3.61
2247 2249 3.715628 TGTTTTCAGAAAGAGCCTTGC 57.284 42.857 0.00 0.00 0.00 4.01
2248 2250 3.290710 TGTTTTCAGAAAGAGCCTTGCT 58.709 40.909 0.00 0.00 43.88 3.91
2249 2251 3.701040 TGTTTTCAGAAAGAGCCTTGCTT 59.299 39.130 0.00 0.00 39.88 3.91
2250 2252 3.996150 TTTCAGAAAGAGCCTTGCTTG 57.004 42.857 0.00 0.00 39.88 4.01
2251 2253 1.901591 TCAGAAAGAGCCTTGCTTGG 58.098 50.000 0.00 0.00 39.88 3.61
2252 2254 1.143684 TCAGAAAGAGCCTTGCTTGGT 59.856 47.619 0.00 0.00 39.88 3.67
2253 2255 1.959282 CAGAAAGAGCCTTGCTTGGTT 59.041 47.619 0.00 0.00 39.88 3.67
2254 2256 2.363359 CAGAAAGAGCCTTGCTTGGTTT 59.637 45.455 0.00 0.00 39.88 3.27
2255 2257 2.363359 AGAAAGAGCCTTGCTTGGTTTG 59.637 45.455 0.00 0.00 39.88 2.93
2256 2258 2.071778 AAGAGCCTTGCTTGGTTTGA 57.928 45.000 0.00 0.00 39.88 2.69
2257 2259 2.071778 AGAGCCTTGCTTGGTTTGAA 57.928 45.000 0.00 0.00 39.88 2.69
2258 2260 1.959282 AGAGCCTTGCTTGGTTTGAAG 59.041 47.619 0.00 0.00 39.88 3.02
2259 2261 1.956477 GAGCCTTGCTTGGTTTGAAGA 59.044 47.619 0.00 0.00 39.88 2.87
2260 2262 2.362077 GAGCCTTGCTTGGTTTGAAGAA 59.638 45.455 0.00 0.00 39.88 2.52
2261 2263 2.363359 AGCCTTGCTTGGTTTGAAGAAG 59.637 45.455 0.00 0.00 33.89 2.85
2262 2264 2.546584 GCCTTGCTTGGTTTGAAGAAGG 60.547 50.000 0.00 0.00 35.50 3.46
2263 2265 2.695147 CCTTGCTTGGTTTGAAGAAGGT 59.305 45.455 0.00 0.00 31.89 3.50
2264 2266 3.243535 CCTTGCTTGGTTTGAAGAAGGTC 60.244 47.826 0.00 0.00 31.89 3.85
2265 2267 3.011566 TGCTTGGTTTGAAGAAGGTCA 57.988 42.857 0.00 0.00 0.00 4.02
2266 2268 3.565307 TGCTTGGTTTGAAGAAGGTCAT 58.435 40.909 0.00 0.00 0.00 3.06
2267 2269 3.960102 TGCTTGGTTTGAAGAAGGTCATT 59.040 39.130 0.00 0.00 0.00 2.57
2268 2270 4.405358 TGCTTGGTTTGAAGAAGGTCATTT 59.595 37.500 0.00 0.00 0.00 2.32
2269 2271 5.596361 TGCTTGGTTTGAAGAAGGTCATTTA 59.404 36.000 0.00 0.00 0.00 1.40
2270 2272 6.097554 TGCTTGGTTTGAAGAAGGTCATTTAA 59.902 34.615 0.00 0.00 0.00 1.52
2271 2273 6.983890 GCTTGGTTTGAAGAAGGTCATTTAAA 59.016 34.615 0.00 0.00 0.00 1.52
2272 2274 7.042725 GCTTGGTTTGAAGAAGGTCATTTAAAC 60.043 37.037 0.00 0.00 35.38 2.01
2273 2275 6.811954 TGGTTTGAAGAAGGTCATTTAAACC 58.188 36.000 14.11 14.11 46.90 3.27
2274 2276 6.183360 TGGTTTGAAGAAGGTCATTTAAACCC 60.183 38.462 16.78 0.00 46.52 4.11
2275 2277 6.041637 GGTTTGAAGAAGGTCATTTAAACCCT 59.958 38.462 11.28 0.00 43.74 4.34
2276 2278 7.418597 GGTTTGAAGAAGGTCATTTAAACCCTT 60.419 37.037 12.93 12.93 43.74 3.95
2285 2287 9.826574 AAGGTCATTTAAACCCTTCTTAAAAAC 57.173 29.630 8.95 0.00 37.52 2.43
2286 2288 8.426489 AGGTCATTTAAACCCTTCTTAAAAACC 58.574 33.333 11.37 11.37 37.80 3.27
2287 2289 7.658575 GGTCATTTAAACCCTTCTTAAAAACCC 59.341 37.037 0.00 0.00 35.12 4.11
2288 2290 8.426489 GTCATTTAAACCCTTCTTAAAAACCCT 58.574 33.333 0.00 0.00 33.26 4.34
2289 2291 8.644216 TCATTTAAACCCTTCTTAAAAACCCTC 58.356 33.333 0.00 0.00 33.26 4.30
2290 2292 8.647796 CATTTAAACCCTTCTTAAAAACCCTCT 58.352 33.333 0.00 0.00 33.26 3.69
2291 2293 8.612486 TTTAAACCCTTCTTAAAAACCCTCTT 57.388 30.769 0.00 0.00 0.00 2.85
2292 2294 6.726490 AAACCCTTCTTAAAAACCCTCTTC 57.274 37.500 0.00 0.00 0.00 2.87
2293 2295 5.664815 ACCCTTCTTAAAAACCCTCTTCT 57.335 39.130 0.00 0.00 0.00 2.85
2294 2296 6.775234 ACCCTTCTTAAAAACCCTCTTCTA 57.225 37.500 0.00 0.00 0.00 2.10
2295 2297 7.157947 ACCCTTCTTAAAAACCCTCTTCTAA 57.842 36.000 0.00 0.00 0.00 2.10
2296 2298 7.232188 ACCCTTCTTAAAAACCCTCTTCTAAG 58.768 38.462 0.00 0.00 0.00 2.18
2297 2299 7.147177 ACCCTTCTTAAAAACCCTCTTCTAAGT 60.147 37.037 0.00 0.00 0.00 2.24
2298 2300 7.724506 CCCTTCTTAAAAACCCTCTTCTAAGTT 59.275 37.037 0.00 0.00 0.00 2.66
2299 2301 9.132923 CCTTCTTAAAAACCCTCTTCTAAGTTT 57.867 33.333 0.00 0.00 34.02 2.66
2300 2302 9.952188 CTTCTTAAAAACCCTCTTCTAAGTTTG 57.048 33.333 0.00 0.00 32.97 2.93
2301 2303 7.937649 TCTTAAAAACCCTCTTCTAAGTTTGC 58.062 34.615 0.00 0.00 32.97 3.68
2302 2304 5.531122 AAAAACCCTCTTCTAAGTTTGCC 57.469 39.130 0.00 0.00 32.97 4.52
2303 2305 2.881111 ACCCTCTTCTAAGTTTGCCC 57.119 50.000 0.00 0.00 0.00 5.36
2304 2306 2.349445 ACCCTCTTCTAAGTTTGCCCT 58.651 47.619 0.00 0.00 0.00 5.19
2305 2307 2.306219 ACCCTCTTCTAAGTTTGCCCTC 59.694 50.000 0.00 0.00 0.00 4.30
2306 2308 2.573915 CCCTCTTCTAAGTTTGCCCTCT 59.426 50.000 0.00 0.00 0.00 3.69
2307 2309 3.775316 CCCTCTTCTAAGTTTGCCCTCTA 59.225 47.826 0.00 0.00 0.00 2.43
2308 2310 4.225267 CCCTCTTCTAAGTTTGCCCTCTAA 59.775 45.833 0.00 0.00 0.00 2.10
2309 2311 5.280521 CCCTCTTCTAAGTTTGCCCTCTAAA 60.281 44.000 0.00 0.00 0.00 1.85
2310 2312 6.238648 CCTCTTCTAAGTTTGCCCTCTAAAA 58.761 40.000 0.00 0.00 0.00 1.52
2311 2313 6.715264 CCTCTTCTAAGTTTGCCCTCTAAAAA 59.285 38.462 0.00 0.00 0.00 1.94
2312 2314 7.394641 CCTCTTCTAAGTTTGCCCTCTAAAAAT 59.605 37.037 0.00 0.00 0.00 1.82
2313 2315 9.449719 CTCTTCTAAGTTTGCCCTCTAAAAATA 57.550 33.333 0.00 0.00 0.00 1.40
2314 2316 9.975218 TCTTCTAAGTTTGCCCTCTAAAAATAT 57.025 29.630 0.00 0.00 0.00 1.28
2321 2323 9.710900 AGTTTGCCCTCTAAAAATATTTTCTTG 57.289 29.630 13.68 7.46 0.00 3.02
2322 2324 8.935844 GTTTGCCCTCTAAAAATATTTTCTTGG 58.064 33.333 13.68 12.54 0.00 3.61
2323 2325 8.429237 TTGCCCTCTAAAAATATTTTCTTGGA 57.571 30.769 13.68 6.26 0.00 3.53
2324 2326 8.608185 TGCCCTCTAAAAATATTTTCTTGGAT 57.392 30.769 13.68 0.33 0.00 3.41
2325 2327 9.045745 TGCCCTCTAAAAATATTTTCTTGGATT 57.954 29.630 13.68 0.00 0.00 3.01
2326 2328 9.890629 GCCCTCTAAAAATATTTTCTTGGATTT 57.109 29.630 13.68 0.00 0.00 2.17
2371 2373 7.411486 CCTTTTTGGTTTTGGGGTTTTATTT 57.589 32.000 0.00 0.00 0.00 1.40
2372 2374 7.261325 CCTTTTTGGTTTTGGGGTTTTATTTG 58.739 34.615 0.00 0.00 0.00 2.32
2373 2375 6.775594 TTTTGGTTTTGGGGTTTTATTTGG 57.224 33.333 0.00 0.00 0.00 3.28
2374 2376 5.452341 TTGGTTTTGGGGTTTTATTTGGT 57.548 34.783 0.00 0.00 0.00 3.67
2375 2377 5.452341 TGGTTTTGGGGTTTTATTTGGTT 57.548 34.783 0.00 0.00 0.00 3.67
2376 2378 5.827756 TGGTTTTGGGGTTTTATTTGGTTT 58.172 33.333 0.00 0.00 0.00 3.27
2377 2379 6.253758 TGGTTTTGGGGTTTTATTTGGTTTT 58.746 32.000 0.00 0.00 0.00 2.43
2378 2380 6.152831 TGGTTTTGGGGTTTTATTTGGTTTTG 59.847 34.615 0.00 0.00 0.00 2.44
2379 2381 6.377429 GGTTTTGGGGTTTTATTTGGTTTTGA 59.623 34.615 0.00 0.00 0.00 2.69
2380 2382 7.068839 GGTTTTGGGGTTTTATTTGGTTTTGAT 59.931 33.333 0.00 0.00 0.00 2.57
2381 2383 7.809546 TTTGGGGTTTTATTTGGTTTTGATC 57.190 32.000 0.00 0.00 0.00 2.92
2382 2384 5.870706 TGGGGTTTTATTTGGTTTTGATCC 58.129 37.500 0.00 0.00 0.00 3.36
2383 2385 5.369699 TGGGGTTTTATTTGGTTTTGATCCA 59.630 36.000 0.00 0.00 0.00 3.41
2384 2386 6.044871 TGGGGTTTTATTTGGTTTTGATCCAT 59.955 34.615 0.00 0.00 34.75 3.41
2385 2387 6.945435 GGGGTTTTATTTGGTTTTGATCCATT 59.055 34.615 0.00 0.00 34.75 3.16
2386 2388 7.120579 GGGGTTTTATTTGGTTTTGATCCATTC 59.879 37.037 0.00 0.00 34.75 2.67
2387 2389 7.882791 GGGTTTTATTTGGTTTTGATCCATTCT 59.117 33.333 0.00 0.00 34.75 2.40
2388 2390 9.283768 GGTTTTATTTGGTTTTGATCCATTCTT 57.716 29.630 0.00 0.00 34.75 2.52
2390 2392 9.844257 TTTTATTTGGTTTTGATCCATTCTTGT 57.156 25.926 0.00 0.00 34.75 3.16
2391 2393 9.844257 TTTATTTGGTTTTGATCCATTCTTGTT 57.156 25.926 0.00 0.00 34.75 2.83
2392 2394 9.844257 TTATTTGGTTTTGATCCATTCTTGTTT 57.156 25.926 0.00 0.00 34.75 2.83
2393 2395 8.750515 ATTTGGTTTTGATCCATTCTTGTTTT 57.249 26.923 0.00 0.00 34.75 2.43
2394 2396 9.844257 ATTTGGTTTTGATCCATTCTTGTTTTA 57.156 25.926 0.00 0.00 34.75 1.52
2395 2397 8.655651 TTGGTTTTGATCCATTCTTGTTTTAC 57.344 30.769 0.00 0.00 34.75 2.01
2396 2398 7.213678 TGGTTTTGATCCATTCTTGTTTTACC 58.786 34.615 0.00 0.00 0.00 2.85
2397 2399 7.147655 TGGTTTTGATCCATTCTTGTTTTACCA 60.148 33.333 0.00 0.00 0.00 3.25
2398 2400 7.877612 GGTTTTGATCCATTCTTGTTTTACCAT 59.122 33.333 0.00 0.00 0.00 3.55
2399 2401 8.711457 GTTTTGATCCATTCTTGTTTTACCATG 58.289 33.333 0.00 0.00 0.00 3.66
2400 2402 5.964758 TGATCCATTCTTGTTTTACCATGC 58.035 37.500 0.00 0.00 0.00 4.06
2401 2403 4.799564 TCCATTCTTGTTTTACCATGCC 57.200 40.909 0.00 0.00 0.00 4.40
2402 2404 4.415596 TCCATTCTTGTTTTACCATGCCT 58.584 39.130 0.00 0.00 0.00 4.75
2403 2405 4.462483 TCCATTCTTGTTTTACCATGCCTC 59.538 41.667 0.00 0.00 0.00 4.70
2404 2406 4.463891 CCATTCTTGTTTTACCATGCCTCT 59.536 41.667 0.00 0.00 0.00 3.69
2405 2407 5.047092 CCATTCTTGTTTTACCATGCCTCTT 60.047 40.000 0.00 0.00 0.00 2.85
2406 2408 6.152661 CCATTCTTGTTTTACCATGCCTCTTA 59.847 38.462 0.00 0.00 0.00 2.10
2407 2409 7.147846 CCATTCTTGTTTTACCATGCCTCTTAT 60.148 37.037 0.00 0.00 0.00 1.73
2408 2410 6.757897 TCTTGTTTTACCATGCCTCTTATG 57.242 37.500 0.00 0.00 0.00 1.90
2418 2420 6.089249 CCATGCCTCTTATGGTAAAATTCC 57.911 41.667 0.00 0.00 40.15 3.01
2419 2421 5.011023 CCATGCCTCTTATGGTAAAATTCCC 59.989 44.000 0.00 0.00 40.15 3.97
2420 2422 4.542697 TGCCTCTTATGGTAAAATTCCCC 58.457 43.478 0.00 0.00 0.00 4.81
2421 2423 4.017037 TGCCTCTTATGGTAAAATTCCCCA 60.017 41.667 0.00 0.00 0.00 4.96
2422 2424 4.959839 GCCTCTTATGGTAAAATTCCCCAA 59.040 41.667 0.00 0.00 0.00 4.12
2423 2425 5.423931 GCCTCTTATGGTAAAATTCCCCAAA 59.576 40.000 0.00 0.00 0.00 3.28
2424 2426 6.070481 GCCTCTTATGGTAAAATTCCCCAAAA 60.070 38.462 0.00 0.00 0.00 2.44
2425 2427 7.327975 CCTCTTATGGTAAAATTCCCCAAAAC 58.672 38.462 0.00 0.00 0.00 2.43
2426 2428 7.247456 TCTTATGGTAAAATTCCCCAAAACC 57.753 36.000 0.00 0.00 0.00 3.27
2427 2429 4.919774 ATGGTAAAATTCCCCAAAACCC 57.080 40.909 0.00 0.00 0.00 4.11
2428 2430 2.980379 TGGTAAAATTCCCCAAAACCCC 59.020 45.455 0.00 0.00 0.00 4.95
2429 2431 3.253220 GGTAAAATTCCCCAAAACCCCT 58.747 45.455 0.00 0.00 0.00 4.79
2430 2432 3.262405 GGTAAAATTCCCCAAAACCCCTC 59.738 47.826 0.00 0.00 0.00 4.30
2431 2433 2.038863 AAATTCCCCAAAACCCCTCC 57.961 50.000 0.00 0.00 0.00 4.30
2432 2434 1.176182 AATTCCCCAAAACCCCTCCT 58.824 50.000 0.00 0.00 0.00 3.69
2433 2435 1.176182 ATTCCCCAAAACCCCTCCTT 58.824 50.000 0.00 0.00 0.00 3.36
2434 2436 0.485543 TTCCCCAAAACCCCTCCTTC 59.514 55.000 0.00 0.00 0.00 3.46
2435 2437 1.078528 CCCCAAAACCCCTCCTTCC 59.921 63.158 0.00 0.00 0.00 3.46
2436 2438 1.735455 CCCCAAAACCCCTCCTTCCA 61.735 60.000 0.00 0.00 0.00 3.53
2437 2439 0.541998 CCCAAAACCCCTCCTTCCAC 60.542 60.000 0.00 0.00 0.00 4.02
2438 2440 0.482887 CCAAAACCCCTCCTTCCACT 59.517 55.000 0.00 0.00 0.00 4.00
2439 2441 1.133167 CCAAAACCCCTCCTTCCACTT 60.133 52.381 0.00 0.00 0.00 3.16
2440 2442 2.677914 CAAAACCCCTCCTTCCACTTT 58.322 47.619 0.00 0.00 0.00 2.66
2441 2443 2.365293 CAAAACCCCTCCTTCCACTTTG 59.635 50.000 0.00 0.00 0.00 2.77
2442 2444 0.482887 AACCCCTCCTTCCACTTTGG 59.517 55.000 0.00 0.00 39.43 3.28
2443 2445 0.402861 ACCCCTCCTTCCACTTTGGA 60.403 55.000 0.00 0.00 46.61 3.53
2452 2454 2.534042 TCCACTTTGGAACAACCCAA 57.466 45.000 0.00 0.00 45.00 4.12
2461 2463 4.559862 TGGAACAACCCAAACATTTTGT 57.440 36.364 0.00 0.00 38.00 2.83
2462 2464 4.508662 TGGAACAACCCAAACATTTTGTC 58.491 39.130 0.00 0.00 38.00 3.18
2463 2465 3.874543 GGAACAACCCAAACATTTTGTCC 59.125 43.478 0.00 0.00 30.92 4.02
2464 2466 4.508662 GAACAACCCAAACATTTTGTCCA 58.491 39.130 0.00 0.00 30.92 4.02
2465 2467 4.559862 ACAACCCAAACATTTTGTCCAA 57.440 36.364 0.00 0.00 0.00 3.53
2466 2468 4.911390 ACAACCCAAACATTTTGTCCAAA 58.089 34.783 0.00 0.00 0.00 3.28
2467 2469 4.697828 ACAACCCAAACATTTTGTCCAAAC 59.302 37.500 0.00 0.00 0.00 2.93
2468 2470 4.835284 ACCCAAACATTTTGTCCAAACT 57.165 36.364 0.00 0.00 0.00 2.66
2469 2471 5.941555 ACCCAAACATTTTGTCCAAACTA 57.058 34.783 0.00 0.00 0.00 2.24
2470 2472 6.301169 ACCCAAACATTTTGTCCAAACTAA 57.699 33.333 0.00 0.00 0.00 2.24
2471 2473 6.894682 ACCCAAACATTTTGTCCAAACTAAT 58.105 32.000 0.00 0.00 0.00 1.73
2472 2474 8.024145 ACCCAAACATTTTGTCCAAACTAATA 57.976 30.769 0.00 0.00 0.00 0.98
2473 2475 8.487028 ACCCAAACATTTTGTCCAAACTAATAA 58.513 29.630 0.00 0.00 0.00 1.40
2474 2476 9.331282 CCCAAACATTTTGTCCAAACTAATAAA 57.669 29.630 0.00 0.00 0.00 1.40
2518 2520 9.859152 ATTCCATTTATTTCTTTTCCCAAAACA 57.141 25.926 0.00 0.00 0.00 2.83
2519 2521 9.686683 TTCCATTTATTTCTTTTCCCAAAACAA 57.313 25.926 0.00 0.00 0.00 2.83
2520 2522 9.859152 TCCATTTATTTCTTTTCCCAAAACAAT 57.141 25.926 0.00 0.00 0.00 2.71
2525 2527 9.898152 TTATTTCTTTTCCCAAAACAATTCTGT 57.102 25.926 0.00 0.00 37.39 3.41
2526 2528 7.841915 TTTCTTTTCCCAAAACAATTCTGTC 57.158 32.000 0.00 0.00 33.45 3.51
2527 2529 5.912892 TCTTTTCCCAAAACAATTCTGTCC 58.087 37.500 0.00 0.00 33.45 4.02
2528 2530 5.660864 TCTTTTCCCAAAACAATTCTGTCCT 59.339 36.000 0.00 0.00 33.45 3.85
2529 2531 5.948742 TTTCCCAAAACAATTCTGTCCTT 57.051 34.783 0.00 0.00 33.45 3.36
2530 2532 5.948742 TTCCCAAAACAATTCTGTCCTTT 57.051 34.783 0.00 0.00 33.45 3.11
2531 2533 7.425224 TTTCCCAAAACAATTCTGTCCTTTA 57.575 32.000 0.00 0.00 33.45 1.85
2532 2534 7.610580 TTCCCAAAACAATTCTGTCCTTTAT 57.389 32.000 0.00 0.00 33.45 1.40
2533 2535 7.610580 TCCCAAAACAATTCTGTCCTTTATT 57.389 32.000 0.00 0.00 33.45 1.40
2534 2536 8.028652 TCCCAAAACAATTCTGTCCTTTATTT 57.971 30.769 0.00 0.00 33.45 1.40
2535 2537 8.490311 TCCCAAAACAATTCTGTCCTTTATTTT 58.510 29.630 0.00 0.00 33.45 1.82
2536 2538 8.558700 CCCAAAACAATTCTGTCCTTTATTTTG 58.441 33.333 0.00 0.00 33.45 2.44
2537 2539 9.323985 CCAAAACAATTCTGTCCTTTATTTTGA 57.676 29.630 0.00 0.00 33.45 2.69
2539 2541 8.593492 AAACAATTCTGTCCTTTATTTTGAGC 57.407 30.769 0.00 0.00 33.45 4.26
2540 2542 6.691508 ACAATTCTGTCCTTTATTTTGAGCC 58.308 36.000 0.00 0.00 0.00 4.70
2541 2543 6.494835 ACAATTCTGTCCTTTATTTTGAGCCT 59.505 34.615 0.00 0.00 0.00 4.58
2542 2544 7.669722 ACAATTCTGTCCTTTATTTTGAGCCTA 59.330 33.333 0.00 0.00 0.00 3.93
2543 2545 7.872113 ATTCTGTCCTTTATTTTGAGCCTAG 57.128 36.000 0.00 0.00 0.00 3.02
2544 2546 5.745227 TCTGTCCTTTATTTTGAGCCTAGG 58.255 41.667 3.67 3.67 0.00 3.02
2545 2547 5.250774 TCTGTCCTTTATTTTGAGCCTAGGT 59.749 40.000 11.31 0.00 0.00 3.08
2546 2548 6.442564 TCTGTCCTTTATTTTGAGCCTAGGTA 59.557 38.462 11.31 0.00 0.00 3.08
2547 2549 7.023171 TGTCCTTTATTTTGAGCCTAGGTAA 57.977 36.000 11.31 0.80 0.00 2.85
2548 2550 7.639378 TGTCCTTTATTTTGAGCCTAGGTAAT 58.361 34.615 11.31 5.70 0.00 1.89
2549 2551 8.113462 TGTCCTTTATTTTGAGCCTAGGTAATT 58.887 33.333 11.31 0.00 0.00 1.40
2550 2552 8.967918 GTCCTTTATTTTGAGCCTAGGTAATTT 58.032 33.333 11.31 0.00 0.00 1.82
2551 2553 8.966868 TCCTTTATTTTGAGCCTAGGTAATTTG 58.033 33.333 11.31 0.00 0.00 2.32
2552 2554 8.197439 CCTTTATTTTGAGCCTAGGTAATTTGG 58.803 37.037 11.31 0.00 0.00 3.28
2553 2555 8.887264 TTTATTTTGAGCCTAGGTAATTTGGA 57.113 30.769 11.31 0.00 0.00 3.53
2554 2556 8.887264 TTATTTTGAGCCTAGGTAATTTGGAA 57.113 30.769 11.31 0.00 0.00 3.53
2555 2557 7.790782 ATTTTGAGCCTAGGTAATTTGGAAA 57.209 32.000 11.31 2.30 0.00 3.13
2556 2558 6.834168 TTTGAGCCTAGGTAATTTGGAAAG 57.166 37.500 11.31 0.00 0.00 2.62
2557 2559 4.270008 TGAGCCTAGGTAATTTGGAAAGC 58.730 43.478 11.31 0.00 0.00 3.51
2558 2560 4.263727 TGAGCCTAGGTAATTTGGAAAGCA 60.264 41.667 11.31 0.00 0.00 3.91
2559 2561 4.672899 AGCCTAGGTAATTTGGAAAGCAA 58.327 39.130 11.31 0.00 0.00 3.91
2560 2562 4.706962 AGCCTAGGTAATTTGGAAAGCAAG 59.293 41.667 11.31 0.00 0.00 4.01
2561 2563 4.462834 GCCTAGGTAATTTGGAAAGCAAGT 59.537 41.667 11.31 0.00 0.00 3.16
2562 2564 5.650703 GCCTAGGTAATTTGGAAAGCAAGTA 59.349 40.000 11.31 0.00 0.00 2.24
2563 2565 6.404403 GCCTAGGTAATTTGGAAAGCAAGTAC 60.404 42.308 11.31 0.00 0.00 2.73
2564 2566 5.977489 AGGTAATTTGGAAAGCAAGTACC 57.023 39.130 1.74 1.74 0.00 3.34
2565 2567 5.641155 AGGTAATTTGGAAAGCAAGTACCT 58.359 37.500 5.75 5.75 0.00 3.08
2566 2568 6.075315 AGGTAATTTGGAAAGCAAGTACCTT 58.925 36.000 5.75 0.00 30.85 3.50
2567 2569 7.235804 AGGTAATTTGGAAAGCAAGTACCTTA 58.764 34.615 5.75 0.00 30.85 2.69
2568 2570 7.726738 AGGTAATTTGGAAAGCAAGTACCTTAA 59.273 33.333 5.75 0.00 30.85 1.85
2569 2571 8.528643 GGTAATTTGGAAAGCAAGTACCTTAAT 58.471 33.333 2.59 0.00 0.00 1.40
2570 2572 9.353999 GTAATTTGGAAAGCAAGTACCTTAATG 57.646 33.333 0.00 0.00 0.00 1.90
2571 2573 5.385509 TTGGAAAGCAAGTACCTTAATGC 57.614 39.130 0.00 0.00 39.06 3.56
2572 2574 3.761752 TGGAAAGCAAGTACCTTAATGCC 59.238 43.478 0.00 0.00 39.59 4.40
2573 2575 3.130516 GGAAAGCAAGTACCTTAATGCCC 59.869 47.826 0.00 0.00 39.59 5.36
2574 2576 3.739401 AAGCAAGTACCTTAATGCCCT 57.261 42.857 0.00 0.00 39.59 5.19
2575 2577 3.739401 AGCAAGTACCTTAATGCCCTT 57.261 42.857 0.00 0.00 39.59 3.95
2576 2578 3.356290 AGCAAGTACCTTAATGCCCTTG 58.644 45.455 0.00 0.00 39.59 3.61
2577 2579 3.010138 AGCAAGTACCTTAATGCCCTTGA 59.990 43.478 11.59 0.00 39.59 3.02
2578 2580 3.378427 GCAAGTACCTTAATGCCCTTGAG 59.622 47.826 11.59 0.00 32.96 3.02
2579 2581 3.283259 AGTACCTTAATGCCCTTGAGC 57.717 47.619 0.00 0.00 0.00 4.26
2580 2582 2.846827 AGTACCTTAATGCCCTTGAGCT 59.153 45.455 0.00 0.00 0.00 4.09
2581 2583 2.907458 ACCTTAATGCCCTTGAGCTT 57.093 45.000 0.00 0.00 0.00 3.74
2582 2584 3.175438 ACCTTAATGCCCTTGAGCTTT 57.825 42.857 0.00 0.00 34.77 3.51
2583 2585 2.827921 ACCTTAATGCCCTTGAGCTTTG 59.172 45.455 0.00 0.00 32.86 2.77
2584 2586 2.167075 CCTTAATGCCCTTGAGCTTTGG 59.833 50.000 0.00 0.00 32.86 3.28
2585 2587 2.603075 TAATGCCCTTGAGCTTTGGT 57.397 45.000 0.00 0.00 32.86 3.67
2586 2588 1.260544 AATGCCCTTGAGCTTTGGTC 58.739 50.000 0.00 0.00 0.00 4.02
2587 2589 0.407139 ATGCCCTTGAGCTTTGGTCT 59.593 50.000 0.00 0.00 0.00 3.85
2588 2590 0.250901 TGCCCTTGAGCTTTGGTCTC 60.251 55.000 0.00 0.00 0.00 3.36
2589 2591 0.250901 GCCCTTGAGCTTTGGTCTCA 60.251 55.000 0.00 0.00 38.67 3.27
2590 2592 1.819305 GCCCTTGAGCTTTGGTCTCAA 60.819 52.381 5.48 5.48 45.25 3.02
2591 2593 2.586425 CCCTTGAGCTTTGGTCTCAAA 58.414 47.619 6.84 0.00 46.25 2.69
2592 2594 3.160269 CCCTTGAGCTTTGGTCTCAAAT 58.840 45.455 6.84 0.00 46.25 2.32
2593 2595 3.192212 CCCTTGAGCTTTGGTCTCAAATC 59.808 47.826 6.84 0.00 46.25 2.17
2594 2596 3.822735 CCTTGAGCTTTGGTCTCAAATCA 59.177 43.478 6.84 0.00 46.25 2.57
2595 2597 4.279169 CCTTGAGCTTTGGTCTCAAATCAA 59.721 41.667 6.84 0.00 46.25 2.57
2596 2598 4.836125 TGAGCTTTGGTCTCAAATCAAC 57.164 40.909 0.00 0.00 41.45 3.18
2597 2599 4.464008 TGAGCTTTGGTCTCAAATCAACT 58.536 39.130 0.00 0.00 41.45 3.16
2598 2600 4.516698 TGAGCTTTGGTCTCAAATCAACTC 59.483 41.667 0.00 0.00 41.45 3.01
2599 2601 3.823304 AGCTTTGGTCTCAAATCAACTCC 59.177 43.478 0.00 0.00 41.45 3.85
2600 2602 3.823304 GCTTTGGTCTCAAATCAACTCCT 59.177 43.478 0.00 0.00 41.45 3.69
2601 2603 4.083057 GCTTTGGTCTCAAATCAACTCCTC 60.083 45.833 0.00 0.00 41.45 3.71
2602 2604 4.982241 TTGGTCTCAAATCAACTCCTCT 57.018 40.909 0.00 0.00 0.00 3.69
2603 2605 4.277515 TGGTCTCAAATCAACTCCTCTG 57.722 45.455 0.00 0.00 0.00 3.35
2604 2606 3.008375 TGGTCTCAAATCAACTCCTCTGG 59.992 47.826 0.00 0.00 0.00 3.86
2605 2607 3.261897 GGTCTCAAATCAACTCCTCTGGA 59.738 47.826 0.00 0.00 0.00 3.86
2606 2608 4.080638 GGTCTCAAATCAACTCCTCTGGAT 60.081 45.833 0.00 0.00 0.00 3.41
2607 2609 4.874966 GTCTCAAATCAACTCCTCTGGATG 59.125 45.833 0.00 0.00 0.00 3.51
2608 2610 4.080695 TCTCAAATCAACTCCTCTGGATGG 60.081 45.833 0.00 0.00 0.00 3.51
2609 2611 3.588842 TCAAATCAACTCCTCTGGATGGT 59.411 43.478 0.00 0.00 0.00 3.55
2610 2612 3.922171 AATCAACTCCTCTGGATGGTC 57.078 47.619 0.00 0.00 0.00 4.02
2611 2613 1.573108 TCAACTCCTCTGGATGGTCC 58.427 55.000 0.00 0.00 36.96 4.46
2612 2614 1.079490 TCAACTCCTCTGGATGGTCCT 59.921 52.381 0.00 0.00 37.46 3.85
2613 2615 1.912043 CAACTCCTCTGGATGGTCCTT 59.088 52.381 0.00 0.00 37.46 3.36
2614 2616 1.577736 ACTCCTCTGGATGGTCCTTG 58.422 55.000 0.00 0.00 37.46 3.61
2615 2617 0.835941 CTCCTCTGGATGGTCCTTGG 59.164 60.000 0.00 0.00 37.46 3.61
2616 2618 0.119155 TCCTCTGGATGGTCCTTGGT 59.881 55.000 0.00 0.00 37.46 3.67
2617 2619 1.364678 TCCTCTGGATGGTCCTTGGTA 59.635 52.381 0.00 0.00 37.46 3.25
2618 2620 2.196595 CCTCTGGATGGTCCTTGGTAA 58.803 52.381 0.00 0.00 37.46 2.85
2619 2621 2.092914 CCTCTGGATGGTCCTTGGTAAC 60.093 54.545 0.00 0.00 37.46 2.50
2620 2622 1.913419 TCTGGATGGTCCTTGGTAACC 59.087 52.381 0.00 0.00 37.46 2.85
2625 2627 2.351706 TGGTCCTTGGTAACCACAAC 57.648 50.000 0.00 0.00 40.60 3.32
2626 2628 1.133730 TGGTCCTTGGTAACCACAACC 60.134 52.381 0.00 0.00 40.60 3.77
2627 2629 1.144298 GGTCCTTGGTAACCACAACCT 59.856 52.381 0.00 0.00 37.91 3.50
2628 2630 2.372837 GGTCCTTGGTAACCACAACCTA 59.627 50.000 0.00 0.00 37.91 3.08
2629 2631 3.558533 GGTCCTTGGTAACCACAACCTAG 60.559 52.174 0.00 0.00 38.92 3.02
2630 2632 3.325716 GTCCTTGGTAACCACAACCTAGA 59.674 47.826 5.46 0.00 40.86 2.43
2631 2633 3.975312 TCCTTGGTAACCACAACCTAGAA 59.025 43.478 5.46 0.00 40.86 2.10
2632 2634 4.070009 CCTTGGTAACCACAACCTAGAAC 58.930 47.826 5.46 0.00 40.86 3.01
2633 2635 3.775261 TGGTAACCACAACCTAGAACC 57.225 47.619 0.00 0.00 37.91 3.62
2634 2636 3.047115 TGGTAACCACAACCTAGAACCA 58.953 45.455 0.00 0.00 37.91 3.67
2635 2637 3.653836 TGGTAACCACAACCTAGAACCAT 59.346 43.478 0.00 0.00 37.91 3.55
2636 2638 4.259356 GGTAACCACAACCTAGAACCATC 58.741 47.826 0.00 0.00 33.97 3.51
2637 2639 4.263156 GGTAACCACAACCTAGAACCATCA 60.263 45.833 0.00 0.00 33.97 3.07
2638 2640 4.447138 AACCACAACCTAGAACCATCAA 57.553 40.909 0.00 0.00 0.00 2.57
2639 2641 4.021102 ACCACAACCTAGAACCATCAAG 57.979 45.455 0.00 0.00 0.00 3.02
2640 2642 3.650942 ACCACAACCTAGAACCATCAAGA 59.349 43.478 0.00 0.00 0.00 3.02
2641 2643 4.289672 ACCACAACCTAGAACCATCAAGAT 59.710 41.667 0.00 0.00 0.00 2.40
2642 2644 4.878397 CCACAACCTAGAACCATCAAGATC 59.122 45.833 0.00 0.00 0.00 2.75
2643 2645 4.878397 CACAACCTAGAACCATCAAGATCC 59.122 45.833 0.00 0.00 0.00 3.36
2644 2646 4.536090 ACAACCTAGAACCATCAAGATCCA 59.464 41.667 0.00 0.00 0.00 3.41
2645 2647 4.762289 ACCTAGAACCATCAAGATCCAC 57.238 45.455 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 78 2.501610 GGGGCAGCCGACTTCTAG 59.498 66.667 5.00 0.00 0.00 2.43
147 148 7.348080 TCGACATGAACTTCTATTAGGACAT 57.652 36.000 0.00 0.00 0.00 3.06
198 199 5.703876 CTGAAACTAAAATGGCTGGACTTC 58.296 41.667 0.00 0.00 0.00 3.01
205 206 3.500343 ACTGGCTGAAACTAAAATGGCT 58.500 40.909 0.00 0.00 0.00 4.75
337 338 7.703058 ACAAGAAACTTCTTTTCCTCTTTCA 57.297 32.000 1.87 0.00 44.70 2.69
356 357 1.211969 GGCGCAGTCTCGTACAAGA 59.788 57.895 10.83 0.00 0.00 3.02
568 569 3.128349 CGTATTAGTATGCCAGGCGTTT 58.872 45.455 12.68 3.43 0.00 3.60
599 600 9.159254 TCCTCCAATATGTCACTAGTATTCAAT 57.841 33.333 0.00 0.00 0.00 2.57
946 947 1.275291 TCAGCCTGTGTTAGTAGTGCC 59.725 52.381 0.00 0.00 0.00 5.01
1014 1015 7.765819 GTGCTCCATATACATATATGTGCTTGA 59.234 37.037 25.48 14.69 42.40 3.02
1029 1030 4.141482 GGGTGGAAAAGAGTGCTCCATATA 60.141 45.833 0.00 0.00 41.21 0.86
1327 1329 5.669904 TGATATGGTCTATCTTGGGTTTGGA 59.330 40.000 0.00 0.00 0.00 3.53
1340 1342 8.783660 ATTTGGAGAGTAGTTGATATGGTCTA 57.216 34.615 0.00 0.00 0.00 2.59
1376 1378 4.215399 TGTCTTCCATTTGAATTCCGTGAC 59.785 41.667 2.27 1.69 31.06 3.67
1580 1582 3.006967 AGTCCTTTGAGTACACAGCGAAT 59.993 43.478 0.00 0.00 0.00 3.34
1651 1653 5.104374 GCTGGGTCATTTGTTTGTATGATG 58.896 41.667 0.00 0.00 33.69 3.07
1654 1656 4.487948 CAGCTGGGTCATTTGTTTGTATG 58.512 43.478 5.57 0.00 0.00 2.39
1719 1721 8.647796 TCCCTAAACTATGTGGTATAATCACTG 58.352 37.037 8.38 3.30 36.21 3.66
1856 1858 0.387878 GGATGGCAGCGATCGAGTAG 60.388 60.000 21.57 5.73 0.00 2.57
1858 1860 2.419198 GGATGGCAGCGATCGAGT 59.581 61.111 21.57 1.12 0.00 4.18
1957 1959 0.535797 CCTCTTAGTTCCGGGGACAC 59.464 60.000 8.48 0.00 0.00 3.67
1959 1961 1.262640 TGCCTCTTAGTTCCGGGGAC 61.263 60.000 0.00 0.00 0.00 4.46
2050 2052 2.094182 GCGCTTTCCGATCATCCCTATA 60.094 50.000 0.00 0.00 40.02 1.31
2201 2203 4.899502 ACCACAAAAATTTTGGTGTCACA 58.100 34.783 28.48 0.00 42.26 3.58
2202 2204 5.871465 AACCACAAAAATTTTGGTGTCAC 57.129 34.783 28.48 0.00 43.08 3.67
2203 2205 6.884280 AAAACCACAAAAATTTTGGTGTCA 57.116 29.167 28.48 0.00 43.08 3.58
2204 2206 7.142021 ACAAAAACCACAAAAATTTTGGTGTC 58.858 30.769 28.48 0.00 43.08 3.67
2205 2207 7.043961 ACAAAAACCACAAAAATTTTGGTGT 57.956 28.000 28.48 17.07 43.08 4.16
2206 2208 7.936950 AACAAAAACCACAAAAATTTTGGTG 57.063 28.000 25.57 25.57 43.08 4.17
2207 2209 8.948631 AAAACAAAAACCACAAAAATTTTGGT 57.051 23.077 20.79 5.04 45.95 3.67
2208 2210 9.034544 TGAAAACAAAAACCACAAAAATTTTGG 57.965 25.926 20.79 8.90 43.54 3.28
2213 2215 9.676195 CTTTCTGAAAACAAAAACCACAAAAAT 57.324 25.926 4.18 0.00 0.00 1.82
2214 2216 8.893727 TCTTTCTGAAAACAAAAACCACAAAAA 58.106 25.926 4.18 0.00 0.00 1.94
2215 2217 8.438676 TCTTTCTGAAAACAAAAACCACAAAA 57.561 26.923 4.18 0.00 0.00 2.44
2216 2218 7.307692 GCTCTTTCTGAAAACAAAAACCACAAA 60.308 33.333 4.18 0.00 0.00 2.83
2217 2219 6.147000 GCTCTTTCTGAAAACAAAAACCACAA 59.853 34.615 4.18 0.00 0.00 3.33
2218 2220 5.637387 GCTCTTTCTGAAAACAAAAACCACA 59.363 36.000 4.18 0.00 0.00 4.17
2219 2221 5.063438 GGCTCTTTCTGAAAACAAAAACCAC 59.937 40.000 4.18 0.00 0.00 4.16
2220 2222 5.046663 AGGCTCTTTCTGAAAACAAAAACCA 60.047 36.000 4.18 0.00 0.00 3.67
2221 2223 5.419542 AGGCTCTTTCTGAAAACAAAAACC 58.580 37.500 4.18 0.28 0.00 3.27
2222 2224 6.673076 GCAAGGCTCTTTCTGAAAACAAAAAC 60.673 38.462 4.18 0.00 0.00 2.43
2223 2225 5.351189 GCAAGGCTCTTTCTGAAAACAAAAA 59.649 36.000 4.18 0.00 0.00 1.94
2224 2226 4.869861 GCAAGGCTCTTTCTGAAAACAAAA 59.130 37.500 4.18 0.00 0.00 2.44
2225 2227 4.160252 AGCAAGGCTCTTTCTGAAAACAAA 59.840 37.500 4.18 0.00 30.62 2.83
2226 2228 3.701040 AGCAAGGCTCTTTCTGAAAACAA 59.299 39.130 4.18 0.00 30.62 2.83
2227 2229 3.290710 AGCAAGGCTCTTTCTGAAAACA 58.709 40.909 4.18 0.00 30.62 2.83
2228 2230 3.998099 AGCAAGGCTCTTTCTGAAAAC 57.002 42.857 4.18 0.00 30.62 2.43
2229 2231 3.068590 CCAAGCAAGGCTCTTTCTGAAAA 59.931 43.478 4.18 0.00 38.25 2.29
2230 2232 2.624838 CCAAGCAAGGCTCTTTCTGAAA 59.375 45.455 2.44 2.44 38.25 2.69
2231 2233 2.233271 CCAAGCAAGGCTCTTTCTGAA 58.767 47.619 0.00 0.00 38.25 3.02
2232 2234 1.143684 ACCAAGCAAGGCTCTTTCTGA 59.856 47.619 0.00 0.00 38.25 3.27
2233 2235 1.613836 ACCAAGCAAGGCTCTTTCTG 58.386 50.000 0.00 0.00 38.25 3.02
2234 2236 2.363359 CAAACCAAGCAAGGCTCTTTCT 59.637 45.455 0.00 0.00 38.25 2.52
2235 2237 2.362077 TCAAACCAAGCAAGGCTCTTTC 59.638 45.455 0.00 0.00 38.25 2.62
2236 2238 2.387757 TCAAACCAAGCAAGGCTCTTT 58.612 42.857 0.00 0.00 38.25 2.52
2237 2239 2.071778 TCAAACCAAGCAAGGCTCTT 57.928 45.000 0.00 0.00 38.25 2.85
2238 2240 1.959282 CTTCAAACCAAGCAAGGCTCT 59.041 47.619 0.00 0.00 38.25 4.09
2239 2241 1.956477 TCTTCAAACCAAGCAAGGCTC 59.044 47.619 0.00 0.00 38.25 4.70
2240 2242 2.071778 TCTTCAAACCAAGCAAGGCT 57.928 45.000 0.00 0.00 42.56 4.58
2241 2243 2.546584 CCTTCTTCAAACCAAGCAAGGC 60.547 50.000 0.00 0.00 30.59 4.35
2242 2244 2.695147 ACCTTCTTCAAACCAAGCAAGG 59.305 45.455 0.00 0.00 37.06 3.61
2243 2245 3.381272 TGACCTTCTTCAAACCAAGCAAG 59.619 43.478 0.00 0.00 0.00 4.01
2244 2246 3.360867 TGACCTTCTTCAAACCAAGCAA 58.639 40.909 0.00 0.00 0.00 3.91
2245 2247 3.011566 TGACCTTCTTCAAACCAAGCA 57.988 42.857 0.00 0.00 0.00 3.91
2246 2248 4.590850 AATGACCTTCTTCAAACCAAGC 57.409 40.909 0.00 0.00 0.00 4.01
2247 2249 7.438160 GGTTTAAATGACCTTCTTCAAACCAAG 59.562 37.037 7.77 0.00 34.66 3.61
2248 2250 7.269316 GGTTTAAATGACCTTCTTCAAACCAA 58.731 34.615 7.77 0.00 34.66 3.67
2249 2251 6.183360 GGGTTTAAATGACCTTCTTCAAACCA 60.183 38.462 13.20 0.00 35.59 3.67
2250 2252 6.041637 AGGGTTTAAATGACCTTCTTCAAACC 59.958 38.462 0.00 0.00 37.34 3.27
2251 2253 7.050970 AGGGTTTAAATGACCTTCTTCAAAC 57.949 36.000 0.00 0.00 37.34 2.93
2252 2254 7.669089 AAGGGTTTAAATGACCTTCTTCAAA 57.331 32.000 13.08 0.00 38.96 2.69
2259 2261 9.826574 GTTTTTAAGAAGGGTTTAAATGACCTT 57.173 29.630 16.80 16.80 45.50 3.50
2260 2262 8.426489 GGTTTTTAAGAAGGGTTTAAATGACCT 58.574 33.333 0.00 0.00 35.85 3.85
2261 2263 7.658575 GGGTTTTTAAGAAGGGTTTAAATGACC 59.341 37.037 0.00 11.28 36.73 4.02
2262 2264 8.426489 AGGGTTTTTAAGAAGGGTTTAAATGAC 58.574 33.333 0.00 0.00 32.00 3.06
2263 2265 8.555896 AGGGTTTTTAAGAAGGGTTTAAATGA 57.444 30.769 0.00 0.00 32.00 2.57
2264 2266 8.647796 AGAGGGTTTTTAAGAAGGGTTTAAATG 58.352 33.333 0.00 0.00 32.00 2.32
2265 2267 8.792830 AGAGGGTTTTTAAGAAGGGTTTAAAT 57.207 30.769 0.00 0.00 32.00 1.40
2266 2268 8.612486 AAGAGGGTTTTTAAGAAGGGTTTAAA 57.388 30.769 0.00 0.00 0.00 1.52
2267 2269 8.063153 AGAAGAGGGTTTTTAAGAAGGGTTTAA 58.937 33.333 0.00 0.00 0.00 1.52
2268 2270 7.589081 AGAAGAGGGTTTTTAAGAAGGGTTTA 58.411 34.615 0.00 0.00 0.00 2.01
2269 2271 6.441222 AGAAGAGGGTTTTTAAGAAGGGTTT 58.559 36.000 0.00 0.00 0.00 3.27
2270 2272 6.027025 AGAAGAGGGTTTTTAAGAAGGGTT 57.973 37.500 0.00 0.00 0.00 4.11
2271 2273 5.664815 AGAAGAGGGTTTTTAAGAAGGGT 57.335 39.130 0.00 0.00 0.00 4.34
2272 2274 7.232188 ACTTAGAAGAGGGTTTTTAAGAAGGG 58.768 38.462 0.00 0.00 0.00 3.95
2273 2275 8.693120 AACTTAGAAGAGGGTTTTTAAGAAGG 57.307 34.615 0.00 0.00 0.00 3.46
2274 2276 9.952188 CAAACTTAGAAGAGGGTTTTTAAGAAG 57.048 33.333 0.00 0.00 30.78 2.85
2275 2277 8.410912 GCAAACTTAGAAGAGGGTTTTTAAGAA 58.589 33.333 0.00 0.00 30.78 2.52
2276 2278 7.013942 GGCAAACTTAGAAGAGGGTTTTTAAGA 59.986 37.037 0.00 0.00 30.78 2.10
2277 2279 7.145985 GGCAAACTTAGAAGAGGGTTTTTAAG 58.854 38.462 0.00 0.00 30.78 1.85
2278 2280 6.041182 GGGCAAACTTAGAAGAGGGTTTTTAA 59.959 38.462 0.00 0.00 30.78 1.52
2279 2281 5.537295 GGGCAAACTTAGAAGAGGGTTTTTA 59.463 40.000 0.00 0.00 30.78 1.52
2280 2282 4.344102 GGGCAAACTTAGAAGAGGGTTTTT 59.656 41.667 0.00 0.00 30.78 1.94
2281 2283 3.895656 GGGCAAACTTAGAAGAGGGTTTT 59.104 43.478 0.00 0.00 30.78 2.43
2282 2284 3.140332 AGGGCAAACTTAGAAGAGGGTTT 59.860 43.478 0.00 0.00 32.99 3.27
2283 2285 2.716969 AGGGCAAACTTAGAAGAGGGTT 59.283 45.455 0.00 0.00 0.00 4.11
2284 2286 2.306219 GAGGGCAAACTTAGAAGAGGGT 59.694 50.000 0.00 0.00 0.00 4.34
2285 2287 2.573915 AGAGGGCAAACTTAGAAGAGGG 59.426 50.000 0.00 0.00 0.00 4.30
2286 2288 3.990959 AGAGGGCAAACTTAGAAGAGG 57.009 47.619 0.00 0.00 0.00 3.69
2287 2289 7.745620 TTTTTAGAGGGCAAACTTAGAAGAG 57.254 36.000 0.00 0.00 0.00 2.85
2288 2290 9.975218 ATATTTTTAGAGGGCAAACTTAGAAGA 57.025 29.630 0.00 0.00 0.00 2.87
2295 2297 9.710900 CAAGAAAATATTTTTAGAGGGCAAACT 57.289 29.630 14.45 0.55 0.00 2.66
2296 2298 8.935844 CCAAGAAAATATTTTTAGAGGGCAAAC 58.064 33.333 14.45 0.00 0.00 2.93
2297 2299 8.875168 TCCAAGAAAATATTTTTAGAGGGCAAA 58.125 29.630 14.45 0.00 0.00 3.68
2298 2300 8.429237 TCCAAGAAAATATTTTTAGAGGGCAA 57.571 30.769 14.45 0.00 0.00 4.52
2299 2301 8.608185 ATCCAAGAAAATATTTTTAGAGGGCA 57.392 30.769 14.45 2.06 0.00 5.36
2300 2302 9.890629 AAATCCAAGAAAATATTTTTAGAGGGC 57.109 29.630 14.45 0.79 0.00 5.19
2347 2349 7.261325 CAAATAAAACCCCAAAACCAAAAAGG 58.739 34.615 0.00 0.00 45.67 3.11
2348 2350 7.093727 ACCAAATAAAACCCCAAAACCAAAAAG 60.094 33.333 0.00 0.00 0.00 2.27
2349 2351 6.724441 ACCAAATAAAACCCCAAAACCAAAAA 59.276 30.769 0.00 0.00 0.00 1.94
2350 2352 6.253758 ACCAAATAAAACCCCAAAACCAAAA 58.746 32.000 0.00 0.00 0.00 2.44
2351 2353 5.827756 ACCAAATAAAACCCCAAAACCAAA 58.172 33.333 0.00 0.00 0.00 3.28
2352 2354 5.452341 ACCAAATAAAACCCCAAAACCAA 57.548 34.783 0.00 0.00 0.00 3.67
2353 2355 5.452341 AACCAAATAAAACCCCAAAACCA 57.548 34.783 0.00 0.00 0.00 3.67
2354 2356 6.377429 TCAAAACCAAATAAAACCCCAAAACC 59.623 34.615 0.00 0.00 0.00 3.27
2355 2357 7.392494 TCAAAACCAAATAAAACCCCAAAAC 57.608 32.000 0.00 0.00 0.00 2.43
2356 2358 7.285629 GGATCAAAACCAAATAAAACCCCAAAA 59.714 33.333 0.00 0.00 0.00 2.44
2357 2359 6.773200 GGATCAAAACCAAATAAAACCCCAAA 59.227 34.615 0.00 0.00 0.00 3.28
2358 2360 6.126478 TGGATCAAAACCAAATAAAACCCCAA 60.126 34.615 0.00 0.00 34.25 4.12
2359 2361 5.369699 TGGATCAAAACCAAATAAAACCCCA 59.630 36.000 0.00 0.00 34.25 4.96
2360 2362 5.870706 TGGATCAAAACCAAATAAAACCCC 58.129 37.500 0.00 0.00 34.25 4.95
2361 2363 7.882791 AGAATGGATCAAAACCAAATAAAACCC 59.117 33.333 0.00 0.00 40.93 4.11
2362 2364 8.846943 AGAATGGATCAAAACCAAATAAAACC 57.153 30.769 0.00 0.00 40.93 3.27
2364 2366 9.844257 ACAAGAATGGATCAAAACCAAATAAAA 57.156 25.926 0.00 0.00 40.93 1.52
2365 2367 9.844257 AACAAGAATGGATCAAAACCAAATAAA 57.156 25.926 0.00 0.00 40.93 1.40
2366 2368 9.844257 AAACAAGAATGGATCAAAACCAAATAA 57.156 25.926 0.00 0.00 40.93 1.40
2367 2369 9.844257 AAAACAAGAATGGATCAAAACCAAATA 57.156 25.926 0.00 0.00 40.93 1.40
2368 2370 8.750515 AAAACAAGAATGGATCAAAACCAAAT 57.249 26.923 0.00 0.00 40.93 2.32
2369 2371 9.103861 GTAAAACAAGAATGGATCAAAACCAAA 57.896 29.630 0.00 0.00 40.93 3.28
2370 2372 7.713073 GGTAAAACAAGAATGGATCAAAACCAA 59.287 33.333 0.00 0.00 40.93 3.67
2371 2373 7.147655 TGGTAAAACAAGAATGGATCAAAACCA 60.148 33.333 0.00 0.00 41.83 3.67
2372 2374 7.213678 TGGTAAAACAAGAATGGATCAAAACC 58.786 34.615 0.00 0.00 0.00 3.27
2373 2375 8.711457 CATGGTAAAACAAGAATGGATCAAAAC 58.289 33.333 0.00 0.00 0.00 2.43
2374 2376 7.387397 GCATGGTAAAACAAGAATGGATCAAAA 59.613 33.333 0.00 0.00 0.00 2.44
2375 2377 6.873076 GCATGGTAAAACAAGAATGGATCAAA 59.127 34.615 0.00 0.00 0.00 2.69
2376 2378 6.397272 GCATGGTAAAACAAGAATGGATCAA 58.603 36.000 0.00 0.00 0.00 2.57
2377 2379 5.105392 GGCATGGTAAAACAAGAATGGATCA 60.105 40.000 0.00 0.00 0.00 2.92
2378 2380 5.127682 AGGCATGGTAAAACAAGAATGGATC 59.872 40.000 0.00 0.00 0.00 3.36
2379 2381 5.025453 AGGCATGGTAAAACAAGAATGGAT 58.975 37.500 0.00 0.00 0.00 3.41
2380 2382 4.415596 AGGCATGGTAAAACAAGAATGGA 58.584 39.130 0.00 0.00 0.00 3.41
2381 2383 4.463891 AGAGGCATGGTAAAACAAGAATGG 59.536 41.667 0.00 0.00 0.00 3.16
2382 2384 5.649782 AGAGGCATGGTAAAACAAGAATG 57.350 39.130 0.00 0.00 0.00 2.67
2383 2385 7.147846 CCATAAGAGGCATGGTAAAACAAGAAT 60.148 37.037 0.00 0.00 38.53 2.40
2384 2386 6.152661 CCATAAGAGGCATGGTAAAACAAGAA 59.847 38.462 0.00 0.00 38.53 2.52
2385 2387 5.652014 CCATAAGAGGCATGGTAAAACAAGA 59.348 40.000 0.00 0.00 38.53 3.02
2386 2388 5.894807 CCATAAGAGGCATGGTAAAACAAG 58.105 41.667 0.00 0.00 38.53 3.16
2387 2389 5.913137 CCATAAGAGGCATGGTAAAACAA 57.087 39.130 0.00 0.00 38.53 2.83
2396 2398 5.011023 GGGGAATTTTACCATAAGAGGCATG 59.989 44.000 0.00 0.00 30.46 4.06
2397 2399 5.147767 GGGGAATTTTACCATAAGAGGCAT 58.852 41.667 0.00 0.00 30.46 4.40
2398 2400 4.017037 TGGGGAATTTTACCATAAGAGGCA 60.017 41.667 0.00 0.00 30.46 4.75
2399 2401 4.542697 TGGGGAATTTTACCATAAGAGGC 58.457 43.478 0.00 0.00 30.46 4.70
2400 2402 7.327975 GTTTTGGGGAATTTTACCATAAGAGG 58.672 38.462 0.00 0.00 33.63 3.69
2401 2403 7.327975 GGTTTTGGGGAATTTTACCATAAGAG 58.672 38.462 0.00 0.00 33.63 2.85
2402 2404 6.213802 GGGTTTTGGGGAATTTTACCATAAGA 59.786 38.462 0.00 0.00 33.63 2.10
2403 2405 6.411376 GGGTTTTGGGGAATTTTACCATAAG 58.589 40.000 0.00 0.00 33.63 1.73
2404 2406 5.251005 GGGGTTTTGGGGAATTTTACCATAA 59.749 40.000 0.00 0.00 33.63 1.90
2405 2407 4.783763 GGGGTTTTGGGGAATTTTACCATA 59.216 41.667 0.00 0.00 33.63 2.74
2406 2408 3.589735 GGGGTTTTGGGGAATTTTACCAT 59.410 43.478 0.00 0.00 33.63 3.55
2407 2409 2.980379 GGGGTTTTGGGGAATTTTACCA 59.020 45.455 0.00 0.00 30.46 3.25
2408 2410 3.253220 AGGGGTTTTGGGGAATTTTACC 58.747 45.455 0.00 0.00 0.00 2.85
2409 2411 3.262405 GGAGGGGTTTTGGGGAATTTTAC 59.738 47.826 0.00 0.00 0.00 2.01
2410 2412 3.145087 AGGAGGGGTTTTGGGGAATTTTA 59.855 43.478 0.00 0.00 0.00 1.52
2411 2413 2.089638 AGGAGGGGTTTTGGGGAATTTT 60.090 45.455 0.00 0.00 0.00 1.82
2412 2414 1.512194 AGGAGGGGTTTTGGGGAATTT 59.488 47.619 0.00 0.00 0.00 1.82
2413 2415 1.176182 AGGAGGGGTTTTGGGGAATT 58.824 50.000 0.00 0.00 0.00 2.17
2414 2416 1.078823 GAAGGAGGGGTTTTGGGGAAT 59.921 52.381 0.00 0.00 0.00 3.01
2415 2417 0.485543 GAAGGAGGGGTTTTGGGGAA 59.514 55.000 0.00 0.00 0.00 3.97
2416 2418 1.440362 GGAAGGAGGGGTTTTGGGGA 61.440 60.000 0.00 0.00 0.00 4.81
2417 2419 1.078528 GGAAGGAGGGGTTTTGGGG 59.921 63.158 0.00 0.00 0.00 4.96
2418 2420 0.541998 GTGGAAGGAGGGGTTTTGGG 60.542 60.000 0.00 0.00 0.00 4.12
2419 2421 0.482887 AGTGGAAGGAGGGGTTTTGG 59.517 55.000 0.00 0.00 0.00 3.28
2420 2422 2.365293 CAAAGTGGAAGGAGGGGTTTTG 59.635 50.000 0.00 0.00 0.00 2.44
2421 2423 2.677914 CAAAGTGGAAGGAGGGGTTTT 58.322 47.619 0.00 0.00 0.00 2.43
2422 2424 1.133167 CCAAAGTGGAAGGAGGGGTTT 60.133 52.381 0.00 0.00 40.96 3.27
2423 2425 0.482887 CCAAAGTGGAAGGAGGGGTT 59.517 55.000 0.00 0.00 40.96 4.11
2424 2426 0.402861 TCCAAAGTGGAAGGAGGGGT 60.403 55.000 0.00 0.00 45.00 4.95
2425 2427 2.474924 TCCAAAGTGGAAGGAGGGG 58.525 57.895 0.00 0.00 45.00 4.79
2433 2435 2.534042 TTGGGTTGTTCCAAAGTGGA 57.466 45.000 0.00 0.00 46.61 4.02
2439 2441 4.911390 ACAAAATGTTTGGGTTGTTCCAA 58.089 34.783 5.76 0.00 44.29 3.53
2440 2442 4.508662 GACAAAATGTTTGGGTTGTTCCA 58.491 39.130 5.76 0.00 34.44 3.53
2441 2443 3.874543 GGACAAAATGTTTGGGTTGTTCC 59.125 43.478 5.76 0.00 34.44 3.62
2442 2444 4.508662 TGGACAAAATGTTTGGGTTGTTC 58.491 39.130 5.76 0.00 34.44 3.18
2443 2445 4.559862 TGGACAAAATGTTTGGGTTGTT 57.440 36.364 5.76 0.00 34.44 2.83
2444 2446 4.559862 TTGGACAAAATGTTTGGGTTGT 57.440 36.364 5.76 0.00 36.92 3.32
2445 2447 4.940654 AGTTTGGACAAAATGTTTGGGTTG 59.059 37.500 5.76 0.00 31.33 3.77
2446 2448 5.172687 AGTTTGGACAAAATGTTTGGGTT 57.827 34.783 5.76 0.00 31.33 4.11
2447 2449 4.835284 AGTTTGGACAAAATGTTTGGGT 57.165 36.364 5.76 0.00 31.33 4.51
2448 2450 8.894768 TTATTAGTTTGGACAAAATGTTTGGG 57.105 30.769 7.87 0.00 30.75 4.12
2492 2494 9.859152 TGTTTTGGGAAAAGAAATAAATGGAAT 57.141 25.926 0.00 0.00 0.00 3.01
2493 2495 9.686683 TTGTTTTGGGAAAAGAAATAAATGGAA 57.313 25.926 0.00 0.00 31.65 3.53
2494 2496 9.859152 ATTGTTTTGGGAAAAGAAATAAATGGA 57.141 25.926 0.00 0.00 37.22 3.41
2499 2501 9.898152 ACAGAATTGTTTTGGGAAAAGAAATAA 57.102 25.926 0.00 0.00 37.22 1.40
2500 2502 9.541143 GACAGAATTGTTTTGGGAAAAGAAATA 57.459 29.630 0.00 0.00 37.22 1.40
2501 2503 7.498900 GGACAGAATTGTTTTGGGAAAAGAAAT 59.501 33.333 0.00 0.00 37.22 2.17
2502 2504 6.821160 GGACAGAATTGTTTTGGGAAAAGAAA 59.179 34.615 0.00 0.00 37.22 2.52
2503 2505 6.156083 AGGACAGAATTGTTTTGGGAAAAGAA 59.844 34.615 0.00 0.00 37.76 2.52
2504 2506 5.660864 AGGACAGAATTGTTTTGGGAAAAGA 59.339 36.000 0.00 0.00 37.76 2.52
2505 2507 5.917462 AGGACAGAATTGTTTTGGGAAAAG 58.083 37.500 0.00 0.00 37.76 2.27
2506 2508 5.948742 AGGACAGAATTGTTTTGGGAAAA 57.051 34.783 0.00 0.00 37.76 2.29
2507 2509 5.948742 AAGGACAGAATTGTTTTGGGAAA 57.051 34.783 0.00 0.00 37.76 3.13
2508 2510 5.948742 AAAGGACAGAATTGTTTTGGGAA 57.051 34.783 0.00 0.00 37.76 3.97
2509 2511 7.610580 AATAAAGGACAGAATTGTTTTGGGA 57.389 32.000 0.00 0.00 37.76 4.37
2510 2512 8.558700 CAAAATAAAGGACAGAATTGTTTTGGG 58.441 33.333 10.10 0.00 39.44 4.12
2511 2513 9.323985 TCAAAATAAAGGACAGAATTGTTTTGG 57.676 29.630 15.01 3.27 41.46 3.28
2513 2515 9.045223 GCTCAAAATAAAGGACAGAATTGTTTT 57.955 29.630 0.00 0.00 37.76 2.43
2514 2516 7.657354 GGCTCAAAATAAAGGACAGAATTGTTT 59.343 33.333 0.00 0.00 37.76 2.83
2515 2517 7.015584 AGGCTCAAAATAAAGGACAGAATTGTT 59.984 33.333 0.00 0.00 37.76 2.83
2516 2518 6.494835 AGGCTCAAAATAAAGGACAGAATTGT 59.505 34.615 0.00 0.00 41.18 2.71
2517 2519 6.928520 AGGCTCAAAATAAAGGACAGAATTG 58.071 36.000 0.00 0.00 0.00 2.32
2518 2520 7.340487 CCTAGGCTCAAAATAAAGGACAGAATT 59.660 37.037 0.00 0.00 0.00 2.17
2519 2521 6.830838 CCTAGGCTCAAAATAAAGGACAGAAT 59.169 38.462 0.00 0.00 0.00 2.40
2520 2522 6.180472 CCTAGGCTCAAAATAAAGGACAGAA 58.820 40.000 0.00 0.00 0.00 3.02
2521 2523 5.250774 ACCTAGGCTCAAAATAAAGGACAGA 59.749 40.000 9.30 0.00 0.00 3.41
2522 2524 5.501156 ACCTAGGCTCAAAATAAAGGACAG 58.499 41.667 9.30 0.00 0.00 3.51
2523 2525 5.514500 ACCTAGGCTCAAAATAAAGGACA 57.486 39.130 9.30 0.00 0.00 4.02
2524 2526 8.521170 AATTACCTAGGCTCAAAATAAAGGAC 57.479 34.615 9.30 0.00 0.00 3.85
2525 2527 8.966868 CAAATTACCTAGGCTCAAAATAAAGGA 58.033 33.333 9.30 0.00 0.00 3.36
2526 2528 8.197439 CCAAATTACCTAGGCTCAAAATAAAGG 58.803 37.037 9.30 0.00 0.00 3.11
2527 2529 8.966868 TCCAAATTACCTAGGCTCAAAATAAAG 58.033 33.333 9.30 0.00 0.00 1.85
2528 2530 8.887264 TCCAAATTACCTAGGCTCAAAATAAA 57.113 30.769 9.30 0.00 0.00 1.40
2529 2531 8.887264 TTCCAAATTACCTAGGCTCAAAATAA 57.113 30.769 9.30 0.00 0.00 1.40
2530 2532 8.887264 TTTCCAAATTACCTAGGCTCAAAATA 57.113 30.769 9.30 0.00 0.00 1.40
2531 2533 7.579531 GCTTTCCAAATTACCTAGGCTCAAAAT 60.580 37.037 9.30 0.00 0.00 1.82
2532 2534 6.295067 GCTTTCCAAATTACCTAGGCTCAAAA 60.295 38.462 9.30 0.00 0.00 2.44
2533 2535 5.185056 GCTTTCCAAATTACCTAGGCTCAAA 59.815 40.000 9.30 0.00 0.00 2.69
2534 2536 4.705023 GCTTTCCAAATTACCTAGGCTCAA 59.295 41.667 9.30 0.60 0.00 3.02
2535 2537 4.263727 TGCTTTCCAAATTACCTAGGCTCA 60.264 41.667 9.30 0.00 0.00 4.26
2536 2538 4.270008 TGCTTTCCAAATTACCTAGGCTC 58.730 43.478 9.30 0.00 0.00 4.70
2537 2539 4.316025 TGCTTTCCAAATTACCTAGGCT 57.684 40.909 9.30 0.00 0.00 4.58
2538 2540 4.462834 ACTTGCTTTCCAAATTACCTAGGC 59.537 41.667 9.30 0.00 31.94 3.93
2539 2541 6.095021 GGTACTTGCTTTCCAAATTACCTAGG 59.905 42.308 7.41 7.41 38.24 3.02
2540 2542 6.884836 AGGTACTTGCTTTCCAAATTACCTAG 59.115 38.462 11.49 0.00 43.79 3.02
2541 2543 6.786122 AGGTACTTGCTTTCCAAATTACCTA 58.214 36.000 11.49 0.00 43.79 3.08
2542 2544 5.641155 AGGTACTTGCTTTCCAAATTACCT 58.359 37.500 8.92 8.92 42.36 3.08
2543 2545 5.977489 AGGTACTTGCTTTCCAAATTACC 57.023 39.130 0.00 0.00 39.89 2.85
2557 2559 4.868300 AGCTCAAGGGCATTAAGGTACTTG 60.868 45.833 15.19 15.19 41.53 3.16
2558 2560 3.267031 AGCTCAAGGGCATTAAGGTACTT 59.733 43.478 0.00 0.00 43.14 2.24
2559 2561 2.846827 AGCTCAAGGGCATTAAGGTACT 59.153 45.455 0.00 0.00 35.30 2.73
2560 2562 3.283259 AGCTCAAGGGCATTAAGGTAC 57.717 47.619 0.00 0.00 34.17 3.34
2561 2563 4.016444 CAAAGCTCAAGGGCATTAAGGTA 58.984 43.478 0.00 0.00 34.17 3.08
2562 2564 2.827921 CAAAGCTCAAGGGCATTAAGGT 59.172 45.455 0.00 0.00 34.17 3.50
2563 2565 2.167075 CCAAAGCTCAAGGGCATTAAGG 59.833 50.000 0.00 0.00 34.17 2.69
2564 2566 2.827921 ACCAAAGCTCAAGGGCATTAAG 59.172 45.455 0.00 0.00 34.17 1.85
2565 2567 2.825532 GACCAAAGCTCAAGGGCATTAA 59.174 45.455 0.00 0.00 34.17 1.40
2566 2568 2.041620 AGACCAAAGCTCAAGGGCATTA 59.958 45.455 7.55 0.00 30.87 1.90
2567 2569 1.203100 AGACCAAAGCTCAAGGGCATT 60.203 47.619 7.55 0.00 30.87 3.56
2568 2570 0.407139 AGACCAAAGCTCAAGGGCAT 59.593 50.000 7.55 0.00 30.87 4.40
2569 2571 0.250901 GAGACCAAAGCTCAAGGGCA 60.251 55.000 7.55 0.00 30.87 5.36
2570 2572 0.250901 TGAGACCAAAGCTCAAGGGC 60.251 55.000 0.00 0.00 39.29 5.19
2571 2573 2.276732 TTGAGACCAAAGCTCAAGGG 57.723 50.000 0.00 0.00 44.81 3.95
2574 2576 4.889409 AGTTGATTTGAGACCAAAGCTCAA 59.111 37.500 0.00 0.00 45.86 3.02
2575 2577 4.464008 AGTTGATTTGAGACCAAAGCTCA 58.536 39.130 7.51 0.00 45.86 4.26
2576 2578 4.083057 GGAGTTGATTTGAGACCAAAGCTC 60.083 45.833 7.51 0.00 45.86 4.09
2577 2579 3.823304 GGAGTTGATTTGAGACCAAAGCT 59.177 43.478 7.51 0.00 45.86 3.74
2578 2580 3.823304 AGGAGTTGATTTGAGACCAAAGC 59.177 43.478 0.00 0.00 45.87 3.51
2579 2581 5.180868 CAGAGGAGTTGATTTGAGACCAAAG 59.819 44.000 0.00 0.00 44.53 2.77
2580 2582 5.065914 CAGAGGAGTTGATTTGAGACCAAA 58.934 41.667 0.00 0.00 45.28 3.28
2581 2583 4.505566 CCAGAGGAGTTGATTTGAGACCAA 60.506 45.833 0.00 0.00 0.00 3.67
2582 2584 3.008375 CCAGAGGAGTTGATTTGAGACCA 59.992 47.826 0.00 0.00 0.00 4.02
2583 2585 3.261897 TCCAGAGGAGTTGATTTGAGACC 59.738 47.826 0.00 0.00 0.00 3.85
2584 2586 4.543590 TCCAGAGGAGTTGATTTGAGAC 57.456 45.455 0.00 0.00 0.00 3.36
2585 2587 4.080695 CCATCCAGAGGAGTTGATTTGAGA 60.081 45.833 0.00 0.00 34.05 3.27
2586 2588 4.197750 CCATCCAGAGGAGTTGATTTGAG 58.802 47.826 0.00 0.00 34.05 3.02
2587 2589 3.588842 ACCATCCAGAGGAGTTGATTTGA 59.411 43.478 0.00 0.00 34.05 2.69
2588 2590 3.944015 GACCATCCAGAGGAGTTGATTTG 59.056 47.826 0.00 0.00 34.05 2.32
2589 2591 3.054065 GGACCATCCAGAGGAGTTGATTT 60.054 47.826 0.00 0.00 36.28 2.17
2590 2592 2.507471 GGACCATCCAGAGGAGTTGATT 59.493 50.000 0.00 0.00 36.28 2.57
2591 2593 2.122768 GGACCATCCAGAGGAGTTGAT 58.877 52.381 0.00 0.00 36.28 2.57
2592 2594 1.079490 AGGACCATCCAGAGGAGTTGA 59.921 52.381 0.00 0.00 39.61 3.18
2593 2595 1.577736 AGGACCATCCAGAGGAGTTG 58.422 55.000 0.00 0.00 39.61 3.16
2594 2596 1.912043 CAAGGACCATCCAGAGGAGTT 59.088 52.381 0.00 0.00 39.61 3.01
2595 2597 1.577736 CAAGGACCATCCAGAGGAGT 58.422 55.000 0.00 0.00 39.61 3.85
2596 2598 0.835941 CCAAGGACCATCCAGAGGAG 59.164 60.000 0.00 0.00 39.61 3.69
2597 2599 0.119155 ACCAAGGACCATCCAGAGGA 59.881 55.000 0.00 0.00 39.61 3.71
2598 2600 1.879575 TACCAAGGACCATCCAGAGG 58.120 55.000 0.00 0.00 39.61 3.69
2599 2601 2.092914 GGTTACCAAGGACCATCCAGAG 60.093 54.545 0.00 0.00 39.61 3.35
2600 2602 1.913419 GGTTACCAAGGACCATCCAGA 59.087 52.381 0.00 0.00 39.61 3.86
2601 2603 1.633432 TGGTTACCAAGGACCATCCAG 59.367 52.381 0.00 0.00 40.85 3.86
2602 2604 1.353022 GTGGTTACCAAGGACCATCCA 59.647 52.381 5.33 0.00 46.74 3.41
2603 2605 1.353022 TGTGGTTACCAAGGACCATCC 59.647 52.381 5.33 0.00 46.74 3.51
2604 2606 2.817844 GTTGTGGTTACCAAGGACCATC 59.182 50.000 5.33 0.00 46.74 3.51
2605 2607 2.490168 GGTTGTGGTTACCAAGGACCAT 60.490 50.000 20.22 0.00 46.74 3.55
2606 2608 1.133730 GGTTGTGGTTACCAAGGACCA 60.134 52.381 20.22 7.23 43.37 4.02
2607 2609 1.144298 AGGTTGTGGTTACCAAGGACC 59.856 52.381 18.52 18.52 38.16 4.46
2608 2610 2.651382 AGGTTGTGGTTACCAAGGAC 57.349 50.000 5.33 5.10 38.16 3.85
2609 2611 3.589641 TCTAGGTTGTGGTTACCAAGGA 58.410 45.455 5.33 0.00 38.16 3.36
2610 2612 4.070009 GTTCTAGGTTGTGGTTACCAAGG 58.930 47.826 5.33 0.00 38.16 3.61
2611 2613 4.070009 GGTTCTAGGTTGTGGTTACCAAG 58.930 47.826 5.33 0.00 38.16 3.61
2612 2614 3.458857 TGGTTCTAGGTTGTGGTTACCAA 59.541 43.478 5.33 0.00 38.16 3.67
2613 2615 3.047115 TGGTTCTAGGTTGTGGTTACCA 58.953 45.455 0.00 0.00 38.16 3.25
2614 2616 3.775261 TGGTTCTAGGTTGTGGTTACC 57.225 47.619 0.00 0.00 35.85 2.85
2615 2617 4.901868 TGATGGTTCTAGGTTGTGGTTAC 58.098 43.478 0.00 0.00 0.00 2.50
2616 2618 5.308497 TCTTGATGGTTCTAGGTTGTGGTTA 59.692 40.000 0.00 0.00 0.00 2.85
2617 2619 4.104102 TCTTGATGGTTCTAGGTTGTGGTT 59.896 41.667 0.00 0.00 0.00 3.67
2618 2620 3.650942 TCTTGATGGTTCTAGGTTGTGGT 59.349 43.478 0.00 0.00 0.00 4.16
2619 2621 4.286297 TCTTGATGGTTCTAGGTTGTGG 57.714 45.455 0.00 0.00 0.00 4.17
2620 2622 4.878397 GGATCTTGATGGTTCTAGGTTGTG 59.122 45.833 0.00 0.00 0.00 3.33
2621 2623 4.536090 TGGATCTTGATGGTTCTAGGTTGT 59.464 41.667 0.00 0.00 0.00 3.32
2622 2624 4.878397 GTGGATCTTGATGGTTCTAGGTTG 59.122 45.833 0.00 0.00 0.00 3.77
2623 2625 5.104259 GTGGATCTTGATGGTTCTAGGTT 57.896 43.478 0.00 0.00 0.00 3.50
2624 2626 4.762289 GTGGATCTTGATGGTTCTAGGT 57.238 45.455 0.00 0.00 0.00 3.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.