Multiple sequence alignment - TraesCS3B01G564300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G564300 chr3B 100.000 4562 0 0 1 4562 797459617 797464178 0.000000e+00 8425.0
1 TraesCS3B01G564300 chr3B 94.737 304 14 2 1 304 821813927 821814228 5.340000e-129 472.0
2 TraesCS3B01G564300 chr3B 91.513 271 19 1 3278 3544 797045642 797045372 2.000000e-98 370.0
3 TraesCS3B01G564300 chr3D 94.909 3359 149 11 904 4257 594238655 594241996 0.000000e+00 5236.0
4 TraesCS3B01G564300 chr3D 93.086 3370 191 14 903 4257 594075120 594071778 0.000000e+00 4894.0
5 TraesCS3B01G564300 chr3D 76.720 683 85 47 3403 4038 593843345 593842690 3.430000e-81 313.0
6 TraesCS3B01G564300 chr3D 91.593 226 17 1 2816 3039 593768680 593768455 1.230000e-80 311.0
7 TraesCS3B01G564300 chr3D 83.188 345 47 9 1197 1531 593909409 593909066 5.730000e-79 305.0
8 TraesCS3B01G564300 chr3D 95.868 121 5 0 4442 4562 594242177 594242297 3.600000e-46 196.0
9 TraesCS3B01G564300 chr3D 87.209 172 12 7 2235 2396 593768849 593768678 2.170000e-43 187.0
10 TraesCS3B01G564300 chr3D 88.435 147 13 4 3266 3411 593909064 593908921 1.690000e-39 174.0
11 TraesCS3B01G564300 chr3A 93.182 3359 208 10 904 4257 724831108 724827766 0.000000e+00 4915.0
12 TraesCS3B01G564300 chr3A 79.171 869 122 34 3266 4087 724780776 724779920 8.630000e-152 547.0
13 TraesCS3B01G564300 chr3A 79.171 869 122 34 3266 4087 745216440 745217296 8.630000e-152 547.0
14 TraesCS3B01G564300 chr3A 84.884 516 38 17 188 680 683198410 683197912 6.860000e-133 484.0
15 TraesCS3B01G564300 chr3A 86.124 418 38 8 2816 3224 724746793 724746387 2.520000e-117 433.0
16 TraesCS3B01G564300 chr3A 92.105 190 14 1 1 190 110322490 110322302 2.710000e-67 267.0
17 TraesCS3B01G564300 chr3A 84.800 250 23 7 3290 3531 724746353 724746111 2.120000e-58 237.0
18 TraesCS3B01G564300 chr3A 95.833 144 4 2 4253 4395 598561955 598561813 9.870000e-57 231.0
19 TraesCS3B01G564300 chr3A 95.745 141 5 1 4256 4395 716541985 716542125 4.590000e-55 226.0
20 TraesCS3B01G564300 chr3A 95.070 142 5 2 4252 4391 371626717 371626576 5.940000e-54 222.0
21 TraesCS3B01G564300 chr3A 85.340 191 15 8 2229 2410 724746963 724746777 7.790000e-43 185.0
22 TraesCS3B01G564300 chr3A 94.949 99 5 0 4442 4540 724827591 724827493 6.110000e-34 156.0
23 TraesCS3B01G564300 chr3A 97.778 45 1 0 1215 1259 724781772 724781728 1.360000e-10 78.7
24 TraesCS3B01G564300 chr3A 97.778 45 1 0 1215 1259 745215444 745215488 1.360000e-10 78.7
25 TraesCS3B01G564300 chr6B 92.807 848 37 6 1 826 28999200 28998355 0.000000e+00 1206.0
26 TraesCS3B01G564300 chr6B 90.000 840 59 7 1 819 472402898 472403733 0.000000e+00 1062.0
27 TraesCS3B01G564300 chr1B 91.325 634 33 2 214 826 687686104 687686736 0.000000e+00 846.0
28 TraesCS3B01G564300 chr1B 92.188 192 13 2 1 192 670921843 670921654 2.090000e-68 270.0
29 TraesCS3B01G564300 chr1B 97.037 135 4 0 4255 4389 649332729 649332863 1.280000e-55 228.0
30 TraesCS3B01G564300 chr7A 89.426 662 42 9 188 826 171246697 171246041 0.000000e+00 809.0
31 TraesCS3B01G564300 chr7A 88.619 536 36 13 188 700 632036430 632035897 3.000000e-176 628.0
32 TraesCS3B01G564300 chr7A 97.727 132 3 0 4254 4385 634386683 634386552 1.280000e-55 228.0
33 TraesCS3B01G564300 chr1A 89.426 662 42 9 188 826 31897566 31898222 0.000000e+00 809.0
34 TraesCS3B01G564300 chr5B 89.124 662 44 9 188 826 701158836 701159492 0.000000e+00 798.0
35 TraesCS3B01G564300 chr5B 91.250 160 10 4 4252 4408 358817045 358816887 9.940000e-52 215.0
36 TraesCS3B01G564300 chr4B 89.124 662 44 9 188 826 653550875 653550219 0.000000e+00 798.0
37 TraesCS3B01G564300 chr5D 89.632 598 57 5 224 819 430604265 430604859 0.000000e+00 756.0
38 TraesCS3B01G564300 chr4A 86.202 645 72 12 188 819 734935522 734934882 0.000000e+00 682.0
39 TraesCS3B01G564300 chr4A 92.188 192 14 1 1 192 598795767 598795957 2.090000e-68 270.0
40 TraesCS3B01G564300 chr2D 88.827 537 34 14 188 700 98681998 98681464 1.790000e-178 636.0
41 TraesCS3B01G564300 chr2D 92.424 132 10 0 188 319 316148738 316148869 6.030000e-44 189.0
42 TraesCS3B01G564300 chrUn 88.796 357 32 5 2816 3165 41883065 41883420 9.070000e-117 431.0
43 TraesCS3B01G564300 chrUn 88.796 357 32 5 2816 3165 288264777 288264422 9.070000e-117 431.0
44 TraesCS3B01G564300 chrUn 88.141 312 23 7 3257 3563 41884866 41885168 4.340000e-95 359.0
45 TraesCS3B01G564300 chr2B 92.188 192 13 2 1 192 656523755 656523944 2.090000e-68 270.0
46 TraesCS3B01G564300 chr2B 97.037 135 3 1 4252 4385 800544905 800545039 4.590000e-55 226.0
47 TraesCS3B01G564300 chr1D 91.667 192 15 1 1 192 418572745 418572555 9.730000e-67 265.0
48 TraesCS3B01G564300 chr1D 91.667 192 15 1 1 192 426600501 426600691 9.730000e-67 265.0
49 TraesCS3B01G564300 chr7B 96.377 138 3 2 4249 4385 505938521 505938657 4.590000e-55 226.0
50 TraesCS3B01G564300 chr6A 93.878 147 8 1 4254 4399 6860099 6859953 2.140000e-53 220.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G564300 chr3B 797459617 797464178 4561 False 8425.00 8425 100.000000 1 4562 1 chr3B.!!$F1 4561
1 TraesCS3B01G564300 chr3D 594071778 594075120 3342 True 4894.00 4894 93.086000 903 4257 1 chr3D.!!$R2 3354
2 TraesCS3B01G564300 chr3D 594238655 594242297 3642 False 2716.00 5236 95.388500 904 4562 2 chr3D.!!$F1 3658
3 TraesCS3B01G564300 chr3D 593842690 593843345 655 True 313.00 313 76.720000 3403 4038 1 chr3D.!!$R1 635
4 TraesCS3B01G564300 chr3A 724827493 724831108 3615 True 2535.50 4915 94.065500 904 4540 2 chr3A.!!$R7 3636
5 TraesCS3B01G564300 chr3A 724779920 724781772 1852 True 312.85 547 88.474500 1215 4087 2 chr3A.!!$R6 2872
6 TraesCS3B01G564300 chr3A 745215444 745217296 1852 False 312.85 547 88.474500 1215 4087 2 chr3A.!!$F2 2872
7 TraesCS3B01G564300 chr3A 724746111 724746963 852 True 285.00 433 85.421333 2229 3531 3 chr3A.!!$R5 1302
8 TraesCS3B01G564300 chr6B 28998355 28999200 845 True 1206.00 1206 92.807000 1 826 1 chr6B.!!$R1 825
9 TraesCS3B01G564300 chr6B 472402898 472403733 835 False 1062.00 1062 90.000000 1 819 1 chr6B.!!$F1 818
10 TraesCS3B01G564300 chr1B 687686104 687686736 632 False 846.00 846 91.325000 214 826 1 chr1B.!!$F2 612
11 TraesCS3B01G564300 chr7A 171246041 171246697 656 True 809.00 809 89.426000 188 826 1 chr7A.!!$R1 638
12 TraesCS3B01G564300 chr7A 632035897 632036430 533 True 628.00 628 88.619000 188 700 1 chr7A.!!$R2 512
13 TraesCS3B01G564300 chr1A 31897566 31898222 656 False 809.00 809 89.426000 188 826 1 chr1A.!!$F1 638
14 TraesCS3B01G564300 chr5B 701158836 701159492 656 False 798.00 798 89.124000 188 826 1 chr5B.!!$F1 638
15 TraesCS3B01G564300 chr4B 653550219 653550875 656 True 798.00 798 89.124000 188 826 1 chr4B.!!$R1 638
16 TraesCS3B01G564300 chr5D 430604265 430604859 594 False 756.00 756 89.632000 224 819 1 chr5D.!!$F1 595
17 TraesCS3B01G564300 chr4A 734934882 734935522 640 True 682.00 682 86.202000 188 819 1 chr4A.!!$R1 631
18 TraesCS3B01G564300 chr2D 98681464 98681998 534 True 636.00 636 88.827000 188 700 1 chr2D.!!$R1 512
19 TraesCS3B01G564300 chrUn 41883065 41885168 2103 False 395.00 431 88.468500 2816 3563 2 chrUn.!!$F1 747

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
892 941 0.033228 TTTTTGCGGCAACATGAGGG 59.967 50.000 16.15 0.0 0.00 4.30 F
895 944 0.254462 TTGCGGCAACATGAGGGATA 59.746 50.000 12.11 0.0 0.00 2.59 F
1818 2548 0.308993 GTGAAGCTGTTGCGCTCTTT 59.691 50.000 9.73 0.0 45.42 2.52 F
2423 3161 1.770658 TGCTAGATCAGGGGATGTTGG 59.229 52.381 0.00 0.0 32.67 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1818 2548 1.271856 TGGGATCAAGCACCGACTTA 58.728 50.000 0.0 0.0 0.00 2.24 R
2361 3099 1.671054 AATGGCAGTGAACCGACCG 60.671 57.895 0.0 0.0 0.00 4.79 R
3216 5345 1.137872 GTGTTGCTCTCTCGATGGGAT 59.862 52.381 0.0 0.0 0.00 3.85 R
3966 6176 0.032117 ACAGGGGATGATCTGGTCGA 60.032 55.000 0.0 0.0 35.47 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 54 1.144708 ACACAACCCACATGACATGGA 59.855 47.619 19.39 0.00 39.87 3.41
55 57 2.225091 ACAACCCACATGACATGGACAT 60.225 45.455 19.39 0.00 39.87 3.06
120 122 0.323725 ACATGCCAACAGATGACCCC 60.324 55.000 0.00 0.00 0.00 4.95
147 149 0.250901 AAGCAACCGACAGCTCCAAT 60.251 50.000 0.00 0.00 40.90 3.16
355 385 2.721167 CGAGACGATGCCCCCAAGA 61.721 63.158 0.00 0.00 0.00 3.02
614 655 3.775654 CCGACCTCACTCTGGCCC 61.776 72.222 0.00 0.00 0.00 5.80
652 693 2.048222 CGACCAGACACGCACCAT 60.048 61.111 0.00 0.00 0.00 3.55
808 857 1.083706 AAGGGAGGGCCTGATCAGT 59.916 57.895 21.11 2.39 0.00 3.41
819 868 0.813821 CTGATCAGTCTGCGACCTCA 59.186 55.000 14.95 5.87 32.18 3.86
826 875 0.531974 GTCTGCGACCTCACCACAAA 60.532 55.000 0.00 0.00 0.00 2.83
827 876 0.396435 TCTGCGACCTCACCACAAAT 59.604 50.000 0.00 0.00 0.00 2.32
828 877 1.202758 TCTGCGACCTCACCACAAATT 60.203 47.619 0.00 0.00 0.00 1.82
829 878 1.608590 CTGCGACCTCACCACAAATTT 59.391 47.619 0.00 0.00 0.00 1.82
830 879 2.811431 CTGCGACCTCACCACAAATTTA 59.189 45.455 0.00 0.00 0.00 1.40
831 880 3.417101 TGCGACCTCACCACAAATTTAT 58.583 40.909 0.00 0.00 0.00 1.40
832 881 3.823873 TGCGACCTCACCACAAATTTATT 59.176 39.130 0.00 0.00 0.00 1.40
833 882 4.165779 GCGACCTCACCACAAATTTATTG 58.834 43.478 0.00 0.00 0.00 1.90
834 883 4.320935 GCGACCTCACCACAAATTTATTGT 60.321 41.667 0.00 0.00 0.00 2.71
835 884 5.768317 CGACCTCACCACAAATTTATTGTT 58.232 37.500 0.00 0.00 0.00 2.83
836 885 6.568844 GCGACCTCACCACAAATTTATTGTTA 60.569 38.462 0.00 0.00 0.00 2.41
837 886 7.021196 CGACCTCACCACAAATTTATTGTTAG 58.979 38.462 0.00 0.00 0.00 2.34
838 887 7.308348 CGACCTCACCACAAATTTATTGTTAGT 60.308 37.037 0.00 0.00 0.00 2.24
839 888 7.657336 ACCTCACCACAAATTTATTGTTAGTG 58.343 34.615 11.97 11.97 36.34 2.74
840 889 7.504238 ACCTCACCACAAATTTATTGTTAGTGA 59.496 33.333 16.70 16.70 39.14 3.41
841 890 8.522830 CCTCACCACAAATTTATTGTTAGTGAT 58.477 33.333 17.43 0.00 39.91 3.06
842 891 9.345517 CTCACCACAAATTTATTGTTAGTGATG 57.654 33.333 17.43 11.49 39.91 3.07
843 892 8.855110 TCACCACAAATTTATTGTTAGTGATGT 58.145 29.630 14.93 0.00 37.80 3.06
891 940 3.584586 TTTTTGCGGCAACATGAGG 57.415 47.368 16.15 0.00 0.00 3.86
892 941 0.033228 TTTTTGCGGCAACATGAGGG 59.967 50.000 16.15 0.00 0.00 4.30
893 942 0.825425 TTTTGCGGCAACATGAGGGA 60.825 50.000 16.15 0.00 0.00 4.20
894 943 0.611618 TTTGCGGCAACATGAGGGAT 60.612 50.000 16.15 0.00 0.00 3.85
895 944 0.254462 TTGCGGCAACATGAGGGATA 59.746 50.000 12.11 0.00 0.00 2.59
896 945 0.473755 TGCGGCAACATGAGGGATAT 59.526 50.000 0.00 0.00 0.00 1.63
897 946 1.133823 TGCGGCAACATGAGGGATATT 60.134 47.619 0.00 0.00 0.00 1.28
898 947 2.105649 TGCGGCAACATGAGGGATATTA 59.894 45.455 0.00 0.00 0.00 0.98
899 948 3.244875 TGCGGCAACATGAGGGATATTAT 60.245 43.478 0.00 0.00 0.00 1.28
900 949 3.375299 GCGGCAACATGAGGGATATTATC 59.625 47.826 0.00 0.00 0.00 1.75
901 950 4.836825 CGGCAACATGAGGGATATTATCT 58.163 43.478 0.00 0.00 0.00 1.98
927 976 4.184649 TCTATAGCAGATCTGGACCACA 57.815 45.455 23.89 0.90 0.00 4.17
931 980 3.446442 AGCAGATCTGGACCACAAAAT 57.554 42.857 23.89 0.00 0.00 1.82
949 998 6.591062 CACAAAATTTTGATCGGATGGTTCAT 59.409 34.615 32.20 6.51 40.55 2.57
955 1004 5.551305 TTGATCGGATGGTTCATACTCAT 57.449 39.130 0.00 0.00 0.00 2.90
958 1007 6.356556 TGATCGGATGGTTCATACTCATTTT 58.643 36.000 0.00 0.00 0.00 1.82
960 1009 5.989477 TCGGATGGTTCATACTCATTTTCT 58.011 37.500 0.00 0.00 0.00 2.52
961 1010 6.414732 TCGGATGGTTCATACTCATTTTCTT 58.585 36.000 0.00 0.00 0.00 2.52
962 1011 6.884295 TCGGATGGTTCATACTCATTTTCTTT 59.116 34.615 0.00 0.00 0.00 2.52
979 1028 4.525411 TCTTTTTCTCGGTTCGAACAAC 57.475 40.909 28.24 12.08 34.74 3.32
1071 1122 2.681778 CTCCACCACCTCCGCTCT 60.682 66.667 0.00 0.00 0.00 4.09
1158 1209 2.664851 TTCCTCCGCAACACGCTG 60.665 61.111 0.00 0.00 41.76 5.18
1516 2246 2.280592 GGCGGGTGTTTGACGTCT 60.281 61.111 17.92 0.00 0.00 4.18
1635 2365 1.177401 GTTCTGGGATGGGCTTGAAC 58.823 55.000 0.00 0.00 0.00 3.18
1687 2417 1.882167 GCTGGCAGCGATGACTCTC 60.882 63.158 25.47 0.00 0.00 3.20
1696 2426 1.000385 GCGATGACTCTCTGAGGGATG 60.000 57.143 12.39 0.00 33.35 3.51
1763 2493 1.818221 GACGTGTTTCTTGCGAGCGT 61.818 55.000 0.00 3.57 0.00 5.07
1818 2548 0.308993 GTGAAGCTGTTGCGCTCTTT 59.691 50.000 9.73 0.00 45.42 2.52
2056 2786 3.814842 TGGACAAGTACTGAAGCATTGTG 59.185 43.478 0.00 0.00 34.41 3.33
2113 2843 3.133901 TGACTTGTACTTCAACTCTGGCA 59.866 43.478 0.00 0.00 32.18 4.92
2361 3099 3.248363 GCTTTGCCACAAAATCTGGTTTC 59.752 43.478 0.00 0.00 0.00 2.78
2423 3161 1.770658 TGCTAGATCAGGGGATGTTGG 59.229 52.381 0.00 0.00 32.67 3.77
2585 3323 5.030936 GCCAAATGAGATTACTTTTCTCGC 58.969 41.667 0.00 0.00 42.08 5.03
2649 3390 5.010213 GGGACTCAGGTATGTCTCTGTAATC 59.990 48.000 0.00 0.00 31.44 1.75
2783 3525 5.009854 ACTTGTTTGGTTGTTCCTCATTG 57.990 39.130 0.00 0.00 37.07 2.82
3144 3892 2.762887 AGATGTGATGAAAGAGCGAGGA 59.237 45.455 0.00 0.00 0.00 3.71
3216 5345 1.819288 TCTTTTGTTGCCGGTGACAAA 59.181 42.857 24.29 24.29 42.23 2.83
3224 5353 1.714899 GCCGGTGACAAATCCCATCG 61.715 60.000 1.90 0.00 36.72 3.84
3273 5402 2.617774 GGCAGAGATGCTTTCCAAGATC 59.382 50.000 0.00 0.00 34.73 2.75
3287 5421 7.414540 GCTTTCCAAGATCGATAAATTGACAGT 60.415 37.037 15.44 0.00 0.00 3.55
3570 5716 3.004524 CGGATTACTGGTAGTGGCTACTC 59.995 52.174 5.78 0.00 37.16 2.59
3586 5733 0.393077 ACTCGCTAGTGCAGTGGTTT 59.607 50.000 3.69 0.00 39.64 3.27
3618 5765 7.337942 GTGAATCCTTGAAGATAAACCTGACAT 59.662 37.037 0.00 0.00 0.00 3.06
3685 5859 0.030705 TCAGCAGAGGCCTAGGGAAT 60.031 55.000 4.42 0.00 42.56 3.01
3735 5913 5.488262 AAGTTATTAAGGGTGTACGGTGT 57.512 39.130 0.00 0.00 0.00 4.16
3758 5936 4.576053 TCAGTGTGGTGTTCTGATTCTTTG 59.424 41.667 0.00 0.00 34.00 2.77
3803 5982 6.758416 GCTTTGCTCCCATTTAGGATTAAAAG 59.242 38.462 0.00 0.00 41.22 2.27
3841 6020 5.368145 TGTAGCCTTGCGATGATTTAATCT 58.632 37.500 6.50 0.00 0.00 2.40
3844 6023 6.305693 AGCCTTGCGATGATTTAATCTTAC 57.694 37.500 6.50 0.00 0.00 2.34
3943 6140 2.308866 ACCGAACCATCTCCAAGGAATT 59.691 45.455 0.00 0.00 0.00 2.17
3944 6141 3.521937 ACCGAACCATCTCCAAGGAATTA 59.478 43.478 0.00 0.00 0.00 1.40
3962 6172 7.102346 AGGAATTATGCTGATTCTCCTATTCG 58.898 38.462 7.04 0.00 34.65 3.34
3965 6175 1.762370 TGCTGATTCTCCTATTCGCCA 59.238 47.619 0.00 0.00 0.00 5.69
3966 6176 2.369860 TGCTGATTCTCCTATTCGCCAT 59.630 45.455 0.00 0.00 0.00 4.40
3967 6177 2.999355 GCTGATTCTCCTATTCGCCATC 59.001 50.000 0.00 0.00 0.00 3.51
3968 6178 3.249091 CTGATTCTCCTATTCGCCATCG 58.751 50.000 0.00 0.00 0.00 3.84
3969 6179 2.890945 TGATTCTCCTATTCGCCATCGA 59.109 45.455 0.00 0.00 43.89 3.59
3970 6180 2.795175 TTCTCCTATTCGCCATCGAC 57.205 50.000 0.00 0.00 45.43 4.20
3971 6181 0.959553 TCTCCTATTCGCCATCGACC 59.040 55.000 0.00 0.00 45.43 4.79
3972 6182 0.673985 CTCCTATTCGCCATCGACCA 59.326 55.000 0.00 0.00 45.43 4.02
3973 6183 0.673985 TCCTATTCGCCATCGACCAG 59.326 55.000 0.00 0.00 45.43 4.00
3974 6184 0.673985 CCTATTCGCCATCGACCAGA 59.326 55.000 0.00 0.00 45.43 3.86
3975 6185 1.273606 CCTATTCGCCATCGACCAGAT 59.726 52.381 0.00 0.00 45.43 2.90
3976 6186 2.600731 CTATTCGCCATCGACCAGATC 58.399 52.381 0.00 0.00 45.43 2.75
4017 6227 2.430332 GACAGAAGACCAGGATCTCCAG 59.570 54.545 0.00 0.00 38.89 3.86
4057 6267 2.261729 TCACCACCTACAAGGCATACA 58.738 47.619 0.00 0.00 39.63 2.29
4059 6269 4.034410 TCACCACCTACAAGGCATACATA 58.966 43.478 0.00 0.00 39.63 2.29
4075 6285 3.454371 ACATAGCCAATACGGTGAGTC 57.546 47.619 0.00 0.00 36.97 3.36
4150 6360 0.898320 AGTAGTCTCGCAACTGCCAT 59.102 50.000 0.00 0.00 37.91 4.40
4188 6398 3.004839 GCAGCTCATCACCTCGTAGATAA 59.995 47.826 0.00 0.00 33.89 1.75
4232 6442 5.049828 GTGGCAAGTCAATTTAAGCTTTGT 58.950 37.500 3.20 0.00 0.00 2.83
4261 6471 5.801380 TGTTTGAGTTTCCTGTATACTCCC 58.199 41.667 4.17 0.00 37.97 4.30
4262 6472 5.546499 TGTTTGAGTTTCCTGTATACTCCCT 59.454 40.000 4.17 0.00 37.97 4.20
4263 6473 5.934402 TTGAGTTTCCTGTATACTCCCTC 57.066 43.478 4.17 2.38 37.97 4.30
4264 6474 4.287552 TGAGTTTCCTGTATACTCCCTCC 58.712 47.826 4.17 0.00 37.97 4.30
4265 6475 3.297736 AGTTTCCTGTATACTCCCTCCG 58.702 50.000 4.17 0.00 0.00 4.63
4266 6476 3.029570 GTTTCCTGTATACTCCCTCCGT 58.970 50.000 4.17 0.00 0.00 4.69
4267 6477 2.653234 TCCTGTATACTCCCTCCGTC 57.347 55.000 4.17 0.00 0.00 4.79
4268 6478 1.144503 TCCTGTATACTCCCTCCGTCC 59.855 57.143 4.17 0.00 0.00 4.79
4269 6479 1.236628 CTGTATACTCCCTCCGTCCG 58.763 60.000 4.17 0.00 0.00 4.79
4270 6480 0.839277 TGTATACTCCCTCCGTCCGA 59.161 55.000 4.17 0.00 0.00 4.55
4271 6481 1.212688 TGTATACTCCCTCCGTCCGAA 59.787 52.381 4.17 0.00 0.00 4.30
4272 6482 2.301346 GTATACTCCCTCCGTCCGAAA 58.699 52.381 0.00 0.00 0.00 3.46
4273 6483 1.856629 ATACTCCCTCCGTCCGAAAA 58.143 50.000 0.00 0.00 0.00 2.29
4274 6484 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
4275 6485 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
4276 6486 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
4277 6487 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
4278 6488 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
4279 6489 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
4280 6490 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
4281 6491 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
4282 6492 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
4283 6493 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
4284 6494 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
4285 6495 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
4286 6496 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
4287 6497 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
4288 6498 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
4289 6499 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
4290 6500 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
4291 6501 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
4292 6502 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
4293 6503 7.273381 CCGAAAATACTTGTCATCAAAATGGAC 59.727 37.037 0.00 0.00 33.42 4.02
4294 6504 7.807433 CGAAAATACTTGTCATCAAAATGGACA 59.193 33.333 0.00 0.00 33.42 4.02
4295 6505 9.474920 GAAAATACTTGTCATCAAAATGGACAA 57.525 29.630 0.00 0.00 34.59 3.18
4296 6506 9.829507 AAAATACTTGTCATCAAAATGGACAAA 57.170 25.926 7.70 0.00 34.98 2.83
4297 6507 9.829507 AAATACTTGTCATCAAAATGGACAAAA 57.170 25.926 7.70 0.84 34.98 2.44
4298 6508 9.829507 AATACTTGTCATCAAAATGGACAAAAA 57.170 25.926 7.70 0.55 34.98 1.94
4361 6571 9.918630 CCTCTTTTATTCATTTTGATGACAAGT 57.081 29.630 0.00 0.00 37.32 3.16
4368 6578 8.915871 ATTCATTTTGATGACAAGTATTTCCG 57.084 30.769 0.00 0.00 37.32 4.30
4369 6579 6.851609 TCATTTTGATGACAAGTATTTCCGG 58.148 36.000 0.00 0.00 37.32 5.14
4370 6580 6.657117 TCATTTTGATGACAAGTATTTCCGGA 59.343 34.615 0.00 0.00 37.32 5.14
4371 6581 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
4372 6582 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
4373 6583 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
4374 6584 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
4375 6585 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
4376 6586 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
4377 6587 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
4378 6588 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
4379 6589 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
4380 6590 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
4381 6591 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
4382 6592 0.682209 TTTCCGGACGGAGGGAGTAG 60.682 60.000 13.64 0.00 46.06 2.57
4383 6593 1.565390 TTCCGGACGGAGGGAGTAGA 61.565 60.000 13.64 0.00 46.06 2.59
4384 6594 1.150992 CCGGACGGAGGGAGTAGAT 59.849 63.158 4.40 0.00 37.50 1.98
4385 6595 0.890090 CCGGACGGAGGGAGTAGATC 60.890 65.000 4.40 0.00 37.50 2.75
4386 6596 1.229315 CGGACGGAGGGAGTAGATCG 61.229 65.000 0.00 0.00 0.00 3.69
4400 6610 4.302455 AGTAGATCGTATGTGCAATCTGC 58.698 43.478 6.59 5.42 45.29 4.26
4409 6619 0.453390 GTGCAATCTGCCTACCTTGC 59.547 55.000 0.00 0.00 44.23 4.01
4503 6849 6.508030 TGCTAATACCTGGACATTTGGATA 57.492 37.500 0.00 0.00 0.00 2.59
4526 6872 2.726821 CAAGTCCATTACCATGTGCCT 58.273 47.619 0.00 0.00 0.00 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.516321 GGGTTGTGTTGTATCGGTTTTAGT 59.484 41.667 0.00 0.00 0.00 2.24
52 54 2.034066 CAGGTTGGCCGGTGATGT 59.966 61.111 1.90 0.00 40.50 3.06
147 149 1.360820 TGTGTTGCTCGTCGTCAAAA 58.639 45.000 4.73 0.00 0.00 2.44
355 385 1.525619 CGTCTTCGCGTCTTTTTCCTT 59.474 47.619 5.77 0.00 0.00 3.36
760 808 2.124570 GCGATGTGGGCTCCATGT 60.125 61.111 0.00 0.00 35.28 3.21
808 857 0.396435 ATTTGTGGTGAGGTCGCAGA 59.604 50.000 0.00 0.00 0.00 4.26
873 922 0.033228 CCCTCATGTTGCCGCAAAAA 59.967 50.000 7.54 0.00 0.00 1.94
874 923 0.825425 TCCCTCATGTTGCCGCAAAA 60.825 50.000 7.54 2.09 0.00 2.44
875 924 0.611618 ATCCCTCATGTTGCCGCAAA 60.612 50.000 7.54 0.00 0.00 3.68
876 925 0.254462 TATCCCTCATGTTGCCGCAA 59.746 50.000 0.38 0.38 0.00 4.85
877 926 0.473755 ATATCCCTCATGTTGCCGCA 59.526 50.000 0.00 0.00 0.00 5.69
878 927 1.609208 AATATCCCTCATGTTGCCGC 58.391 50.000 0.00 0.00 0.00 6.53
879 928 4.836825 AGATAATATCCCTCATGTTGCCG 58.163 43.478 0.00 0.00 0.00 5.69
880 929 8.814038 ATAAAGATAATATCCCTCATGTTGCC 57.186 34.615 0.00 0.00 0.00 4.52
898 947 8.757877 GGTCCAGATCTGCTATAGAATAAAGAT 58.242 37.037 17.76 3.36 39.30 2.40
899 948 7.730332 TGGTCCAGATCTGCTATAGAATAAAGA 59.270 37.037 17.76 1.43 39.30 2.52
900 949 7.816995 GTGGTCCAGATCTGCTATAGAATAAAG 59.183 40.741 17.76 0.00 39.30 1.85
901 950 7.290014 TGTGGTCCAGATCTGCTATAGAATAAA 59.710 37.037 17.76 0.00 39.30 1.40
927 976 8.066612 AGTATGAACCATCCGATCAAAATTTT 57.933 30.769 0.00 0.00 0.00 1.82
931 980 5.739959 TGAGTATGAACCATCCGATCAAAA 58.260 37.500 0.00 0.00 0.00 2.44
949 998 6.702723 TCGAACCGAGAAAAAGAAAATGAGTA 59.297 34.615 0.00 0.00 0.00 2.59
955 1004 5.548706 TGTTCGAACCGAGAAAAAGAAAA 57.451 34.783 24.78 0.00 37.14 2.29
958 1007 4.186159 AGTTGTTCGAACCGAGAAAAAGA 58.814 39.130 24.78 0.00 37.14 2.52
960 1009 4.525411 GAGTTGTTCGAACCGAGAAAAA 57.475 40.909 24.78 8.26 37.14 1.94
1584 2314 1.081892 CAAACACCCTCAGCATCTCG 58.918 55.000 0.00 0.00 0.00 4.04
1635 2365 2.734079 GACACTTCCAAGAGCGAAAGAG 59.266 50.000 0.00 0.00 0.00 2.85
1687 2417 3.197790 CGCGGCAACATCCCTCAG 61.198 66.667 0.00 0.00 0.00 3.35
1763 2493 3.362870 TGGCATACATGTCAACCATCA 57.637 42.857 0.00 0.00 39.82 3.07
1818 2548 1.271856 TGGGATCAAGCACCGACTTA 58.728 50.000 0.00 0.00 0.00 2.24
2056 2786 3.539604 CAATGAAGTCATCTCCCTGGAC 58.460 50.000 0.00 0.00 35.10 4.02
2113 2843 4.230502 ACACCTGAACCCATCTTCCATATT 59.769 41.667 0.00 0.00 0.00 1.28
2361 3099 1.671054 AATGGCAGTGAACCGACCG 60.671 57.895 0.00 0.00 0.00 4.79
2423 3161 3.537206 AACCTCCGGACTGCAGCAC 62.537 63.158 15.27 8.36 0.00 4.40
2517 3255 3.314080 CACTGAAAAACCGTAAAGCCTCA 59.686 43.478 0.00 0.00 0.00 3.86
2585 3323 2.093500 TGGCTACATGCAGTAAGGACAG 60.093 50.000 0.00 0.00 45.15 3.51
2649 3390 9.106070 TCAAGATGTCTGTATGAATCATTGAAG 57.894 33.333 0.00 0.00 0.00 3.02
2686 3427 4.062991 AGTTCGACCCATGTACAGTTTTC 58.937 43.478 0.33 0.00 0.00 2.29
2688 3429 3.764237 AGTTCGACCCATGTACAGTTT 57.236 42.857 0.33 0.00 0.00 2.66
2783 3525 3.282885 GAGACCATGAAAGGAATGGACC 58.717 50.000 9.36 1.45 46.44 4.46
2976 3721 3.251004 TGTCTCGATGGATACGACATGAG 59.749 47.826 0.00 0.00 42.51 2.90
3144 3892 3.711704 TCAGACCAGGTTCTTTCTTCACT 59.288 43.478 0.00 0.00 0.00 3.41
3216 5345 1.137872 GTGTTGCTCTCTCGATGGGAT 59.862 52.381 0.00 0.00 0.00 3.85
3224 5353 5.822278 TCGAGTATATTGTGTTGCTCTCTC 58.178 41.667 0.00 0.00 0.00 3.20
3273 5402 4.490959 GCGTCAGTGACTGTCAATTTATCG 60.491 45.833 20.64 12.82 32.61 2.92
3323 5457 5.060506 TCATCCAACTTTGCTCGTTTCTAA 58.939 37.500 0.00 0.00 0.00 2.10
3570 5716 1.225855 TTGAAACCACTGCACTAGCG 58.774 50.000 0.00 0.00 46.23 4.26
3618 5765 6.959904 TGGTAACTAAATAGGTATGCCAACA 58.040 36.000 1.54 0.00 35.27 3.33
3660 5808 3.117888 CCCTAGGCCTCTGCTGAAAAATA 60.118 47.826 9.68 0.00 37.74 1.40
3735 5913 4.422073 AAGAATCAGAACACCACACTGA 57.578 40.909 0.00 0.00 43.25 3.41
3803 5982 2.808543 GGCTACAATATGCACCTACAGC 59.191 50.000 0.00 0.00 0.00 4.40
3841 6020 4.009675 CCTGCTGGCAGAAATGTAAGTAA 58.990 43.478 20.86 0.00 46.30 2.24
3844 6023 2.715046 TCCTGCTGGCAGAAATGTAAG 58.285 47.619 20.86 4.79 46.30 2.34
3943 6140 3.578282 TGGCGAATAGGAGAATCAGCATA 59.422 43.478 0.00 0.00 36.25 3.14
3944 6141 2.369860 TGGCGAATAGGAGAATCAGCAT 59.630 45.455 0.00 0.00 36.25 3.79
3962 6172 0.321122 GGGATGATCTGGTCGATGGC 60.321 60.000 0.00 0.00 30.84 4.40
3965 6175 1.346062 CAGGGGATGATCTGGTCGAT 58.654 55.000 0.00 0.00 34.25 3.59
3966 6176 0.032117 ACAGGGGATGATCTGGTCGA 60.032 55.000 0.00 0.00 35.47 4.20
3967 6177 0.833287 AACAGGGGATGATCTGGTCG 59.167 55.000 0.00 0.00 35.47 4.79
3968 6178 2.370189 CCTAACAGGGGATGATCTGGTC 59.630 54.545 0.00 0.00 35.47 4.02
3969 6179 2.412591 CCTAACAGGGGATGATCTGGT 58.587 52.381 0.00 0.00 35.47 4.00
3970 6180 1.072965 GCCTAACAGGGGATGATCTGG 59.927 57.143 0.00 0.00 35.37 3.86
3971 6181 1.770658 TGCCTAACAGGGGATGATCTG 59.229 52.381 0.00 0.00 35.37 2.90
3972 6182 2.196742 TGCCTAACAGGGGATGATCT 57.803 50.000 0.00 0.00 35.37 2.75
3976 6186 3.426903 CCATGCCTAACAGGGGATG 57.573 57.895 7.82 7.82 46.80 3.51
4017 6227 6.103330 GGTGAAGGAGAGAATGTCTTCTAAC 58.897 44.000 0.00 0.00 40.77 2.34
4057 6267 5.138276 TCTAAGACTCACCGTATTGGCTAT 58.862 41.667 0.00 0.00 43.94 2.97
4059 6269 3.362706 TCTAAGACTCACCGTATTGGCT 58.637 45.455 0.00 0.00 43.94 4.75
4066 6276 7.162082 AGAATGAAATTTCTAAGACTCACCGT 58.838 34.615 18.64 0.00 36.07 4.83
4116 6326 5.119279 CGAGACTACTGTCAACAATTCCTTG 59.881 44.000 0.00 0.00 45.20 3.61
4117 6327 5.230942 CGAGACTACTGTCAACAATTCCTT 58.769 41.667 0.00 0.00 45.20 3.36
4126 6336 3.013276 CAGTTGCGAGACTACTGTCAA 57.987 47.619 0.00 0.00 44.21 3.18
4150 6360 0.984230 CTGCCACAAACCCTCCTAGA 59.016 55.000 0.00 0.00 0.00 2.43
4188 6398 0.343372 TTCTAGGAGGCCCAGGTGAT 59.657 55.000 0.00 0.00 33.88 3.06
4257 6467 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
4258 6468 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
4259 6469 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
4261 6471 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
4262 6472 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
4263 6473 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
4264 6474 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
4265 6475 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
4266 6476 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
4267 6477 7.273381 GTCCATTTTGATGACAAGTATTTTCGG 59.727 37.037 0.00 0.00 37.32 4.30
4268 6478 7.807433 TGTCCATTTTGATGACAAGTATTTTCG 59.193 33.333 0.00 0.00 37.32 3.46
4269 6479 9.474920 TTGTCCATTTTGATGACAAGTATTTTC 57.525 29.630 0.00 0.00 37.32 2.29
4270 6480 9.829507 TTTGTCCATTTTGATGACAAGTATTTT 57.170 25.926 0.00 0.00 37.13 1.82
4271 6481 9.829507 TTTTGTCCATTTTGATGACAAGTATTT 57.170 25.926 0.00 0.00 37.13 1.40
4272 6482 9.829507 TTTTTGTCCATTTTGATGACAAGTATT 57.170 25.926 0.00 0.00 37.13 1.89
4335 6545 9.918630 ACTTGTCATCAAAATGAATAAAAGAGG 57.081 29.630 0.00 0.00 43.42 3.69
4343 6553 7.975616 CCGGAAATACTTGTCATCAAAATGAAT 59.024 33.333 0.00 0.00 43.42 2.57
4344 6554 7.175816 TCCGGAAATACTTGTCATCAAAATGAA 59.824 33.333 0.00 0.00 43.42 2.57
4345 6555 6.657117 TCCGGAAATACTTGTCATCAAAATGA 59.343 34.615 0.00 0.00 39.63 2.57
4346 6556 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
4347 6557 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
4348 6558 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
4349 6559 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
4350 6560 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
4351 6561 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
4352 6562 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
4353 6563 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
4354 6564 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
4355 6565 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
4356 6566 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
4357 6567 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
4358 6568 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
4359 6569 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
4360 6570 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
4361 6571 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
4362 6572 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
4363 6573 0.682209 CTACTCCCTCCGTCCGGAAA 60.682 60.000 5.23 0.00 44.66 3.13
4364 6574 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
4365 6575 1.351080 ATCTACTCCCTCCGTCCGGA 61.351 60.000 0.00 0.00 42.90 5.14
4366 6576 0.890090 GATCTACTCCCTCCGTCCGG 60.890 65.000 0.00 0.00 0.00 5.14
4367 6577 1.229315 CGATCTACTCCCTCCGTCCG 61.229 65.000 0.00 0.00 0.00 4.79
4368 6578 0.179023 ACGATCTACTCCCTCCGTCC 60.179 60.000 0.00 0.00 0.00 4.79
4369 6579 2.540265 TACGATCTACTCCCTCCGTC 57.460 55.000 0.00 0.00 0.00 4.79
4370 6580 2.106166 ACATACGATCTACTCCCTCCGT 59.894 50.000 0.00 0.00 0.00 4.69
4371 6581 2.484651 CACATACGATCTACTCCCTCCG 59.515 54.545 0.00 0.00 0.00 4.63
4372 6582 2.229302 GCACATACGATCTACTCCCTCC 59.771 54.545 0.00 0.00 0.00 4.30
4373 6583 2.885266 TGCACATACGATCTACTCCCTC 59.115 50.000 0.00 0.00 0.00 4.30
4374 6584 2.945456 TGCACATACGATCTACTCCCT 58.055 47.619 0.00 0.00 0.00 4.20
4375 6585 3.728076 TTGCACATACGATCTACTCCC 57.272 47.619 0.00 0.00 0.00 4.30
4376 6586 4.920340 CAGATTGCACATACGATCTACTCC 59.080 45.833 0.00 0.00 38.50 3.85
4377 6587 4.384247 GCAGATTGCACATACGATCTACTC 59.616 45.833 0.00 0.00 44.26 2.59
4378 6588 4.302455 GCAGATTGCACATACGATCTACT 58.698 43.478 0.00 0.00 44.26 2.57
4379 6589 4.637574 GCAGATTGCACATACGATCTAC 57.362 45.455 0.00 0.00 44.26 2.59
4400 6610 1.822990 TCCGTAACTGAGCAAGGTAGG 59.177 52.381 0.00 0.00 34.35 3.18
4449 6795 8.066595 GCTCTAACACAATAATGACATGATCAC 58.933 37.037 0.00 0.00 41.24 3.06
4503 6849 2.726821 CACATGGTAATGGACTTGCCT 58.273 47.619 0.00 0.00 40.11 4.75
4526 6872 8.417106 TGAAACAATTAGCAAACCAAGATAACA 58.583 29.630 0.00 0.00 0.00 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.