Multiple sequence alignment - TraesCS3B01G563000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G563000 chr3B 100.000 3829 0 0 1 3829 795968302 795972130 0.000000e+00 7071
1 TraesCS3B01G563000 chr3B 97.319 1268 29 5 2095 3360 312165667 312164403 0.000000e+00 2148
2 TraesCS3B01G563000 chr3B 97.467 1066 27 0 1025 2090 312167251 312166186 0.000000e+00 1820
3 TraesCS3B01G563000 chr3B 97.143 805 21 2 227 1030 312169297 312168494 0.000000e+00 1358
4 TraesCS3B01G563000 chr3B 85.604 1299 174 13 799 2090 62881678 62880386 0.000000e+00 1351
5 TraesCS3B01G563000 chr3B 80.331 544 91 13 2344 2881 803228031 803228564 7.710000e-107 398
6 TraesCS3B01G563000 chr3B 92.093 215 11 3 1 209 312169884 312169670 8.040000e-77 298
7 TraesCS3B01G563000 chr1B 96.748 2091 38 5 1 2090 89442884 89440823 0.000000e+00 3458
8 TraesCS3B01G563000 chr1B 98.737 1267 12 4 2095 3360 89440304 89439041 0.000000e+00 2248
9 TraesCS3B01G563000 chr1B 84.207 1336 191 13 765 2090 604788876 604790201 0.000000e+00 1280
10 TraesCS3B01G563000 chr1B 98.938 471 3 2 3360 3828 89418788 89419258 0.000000e+00 841
11 TraesCS3B01G563000 chr1B 98.938 471 4 1 3360 3829 113047586 113047116 0.000000e+00 841
12 TraesCS3B01G563000 chr1B 90.338 207 19 1 3157 3363 185548967 185548762 1.750000e-68 270
13 TraesCS3B01G563000 chr6D 94.294 2103 98 12 1 2090 229352988 229355081 0.000000e+00 3199
14 TraesCS3B01G563000 chr6D 96.145 1271 44 3 2095 3363 229383446 229384713 0.000000e+00 2071
15 TraesCS3B01G563000 chrUn 86.029 1317 172 11 782 2090 75465867 75467179 0.000000e+00 1402
16 TraesCS3B01G563000 chrUn 82.100 838 127 19 2096 2925 75467721 75468543 0.000000e+00 695
17 TraesCS3B01G563000 chr2D 85.891 1297 174 9 799 2090 121215297 121214005 0.000000e+00 1373
18 TraesCS3B01G563000 chr2D 87.870 676 57 16 2691 3363 555035344 555034691 0.000000e+00 771
19 TraesCS3B01G563000 chr2D 82.527 744 118 11 2096 2835 121213464 121212729 0.000000e+00 643
20 TraesCS3B01G563000 chr7A 85.736 1297 177 8 799 2090 450570147 450568854 0.000000e+00 1363
21 TraesCS3B01G563000 chr7A 92.271 207 16 0 3157 3363 458775434 458775228 1.040000e-75 294
22 TraesCS3B01G563000 chr6B 85.274 1297 183 6 799 2090 139442617 139443910 0.000000e+00 1330
23 TraesCS3B01G563000 chr6B 99.151 471 3 1 3360 3829 58337322 58336852 0.000000e+00 846
24 TraesCS3B01G563000 chr6B 99.151 471 3 1 3360 3829 58345299 58344829 0.000000e+00 846
25 TraesCS3B01G563000 chr6B 98.938 471 4 1 3360 3829 87906494 87906964 0.000000e+00 841
26 TraesCS3B01G563000 chr7B 84.679 1338 193 10 759 2090 515067632 515068963 0.000000e+00 1325
27 TraesCS3B01G563000 chr7B 99.151 471 3 1 3360 3829 330910961 330910491 0.000000e+00 846
28 TraesCS3B01G563000 chr7B 98.938 471 4 1 3360 3829 84198577 84199047 0.000000e+00 841
29 TraesCS3B01G563000 chr1A 85.077 1300 183 10 799 2090 42882129 42883425 0.000000e+00 1315
30 TraesCS3B01G563000 chr1A 80.669 688 110 19 2246 2925 42898329 42899001 2.640000e-141 512
31 TraesCS3B01G563000 chr5A 84.000 1300 166 25 799 2090 672817927 672816662 0.000000e+00 1210
32 TraesCS3B01G563000 chr2B 98.938 471 4 1 3360 3829 34785101 34785571 0.000000e+00 841
33 TraesCS3B01G563000 chr2B 81.051 818 136 14 2109 2924 212061621 212060821 5.400000e-178 634
34 TraesCS3B01G563000 chr4B 98.729 472 4 2 3360 3829 139367392 139366921 0.000000e+00 837
35 TraesCS3B01G563000 chr3D 81.959 837 130 18 2096 2925 166289796 166290618 0.000000e+00 689
36 TraesCS3B01G563000 chr1D 82.560 797 109 24 2100 2881 122842709 122841928 0.000000e+00 675
37 TraesCS3B01G563000 chr1D 90.435 230 20 2 3141 3369 121620091 121619863 6.220000e-78 302
38 TraesCS3B01G563000 chr5D 85.185 486 63 6 2397 2881 535527126 535526649 1.240000e-134 490
39 TraesCS3B01G563000 chr5B 88.584 219 22 3 3140 3356 554656134 554655917 2.930000e-66 263
40 TraesCS3B01G563000 chr5B 88.128 219 25 1 3140 3357 33544552 33544770 3.790000e-65 259


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G563000 chr3B 795968302 795972130 3828 False 7071.0 7071 100.0000 1 3829 1 chr3B.!!$F1 3828
1 TraesCS3B01G563000 chr3B 312164403 312169884 5481 True 1406.0 2148 96.0055 1 3360 4 chr3B.!!$R2 3359
2 TraesCS3B01G563000 chr3B 62880386 62881678 1292 True 1351.0 1351 85.6040 799 2090 1 chr3B.!!$R1 1291
3 TraesCS3B01G563000 chr3B 803228031 803228564 533 False 398.0 398 80.3310 2344 2881 1 chr3B.!!$F2 537
4 TraesCS3B01G563000 chr1B 89439041 89442884 3843 True 2853.0 3458 97.7425 1 3360 2 chr1B.!!$R3 3359
5 TraesCS3B01G563000 chr1B 604788876 604790201 1325 False 1280.0 1280 84.2070 765 2090 1 chr1B.!!$F2 1325
6 TraesCS3B01G563000 chr6D 229352988 229355081 2093 False 3199.0 3199 94.2940 1 2090 1 chr6D.!!$F1 2089
7 TraesCS3B01G563000 chr6D 229383446 229384713 1267 False 2071.0 2071 96.1450 2095 3363 1 chr6D.!!$F2 1268
8 TraesCS3B01G563000 chrUn 75465867 75468543 2676 False 1048.5 1402 84.0645 782 2925 2 chrUn.!!$F1 2143
9 TraesCS3B01G563000 chr2D 121212729 121215297 2568 True 1008.0 1373 84.2090 799 2835 2 chr2D.!!$R2 2036
10 TraesCS3B01G563000 chr2D 555034691 555035344 653 True 771.0 771 87.8700 2691 3363 1 chr2D.!!$R1 672
11 TraesCS3B01G563000 chr7A 450568854 450570147 1293 True 1363.0 1363 85.7360 799 2090 1 chr7A.!!$R1 1291
12 TraesCS3B01G563000 chr6B 139442617 139443910 1293 False 1330.0 1330 85.2740 799 2090 1 chr6B.!!$F2 1291
13 TraesCS3B01G563000 chr7B 515067632 515068963 1331 False 1325.0 1325 84.6790 759 2090 1 chr7B.!!$F2 1331
14 TraesCS3B01G563000 chr1A 42882129 42883425 1296 False 1315.0 1315 85.0770 799 2090 1 chr1A.!!$F1 1291
15 TraesCS3B01G563000 chr1A 42898329 42899001 672 False 512.0 512 80.6690 2246 2925 1 chr1A.!!$F2 679
16 TraesCS3B01G563000 chr5A 672816662 672817927 1265 True 1210.0 1210 84.0000 799 2090 1 chr5A.!!$R1 1291
17 TraesCS3B01G563000 chr2B 212060821 212061621 800 True 634.0 634 81.0510 2109 2924 1 chr2B.!!$R1 815
18 TraesCS3B01G563000 chr3D 166289796 166290618 822 False 689.0 689 81.9590 2096 2925 1 chr3D.!!$F1 829
19 TraesCS3B01G563000 chr1D 122841928 122842709 781 True 675.0 675 82.5600 2100 2881 1 chr1D.!!$R2 781

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
387 752 0.610687 CTCCATCCCGCCTATCTTCC 59.389 60.000 0.00 0.0 0.00 3.46 F
594 960 1.367346 TGCTGATAAGTGGAACCCCA 58.633 50.000 0.00 0.0 40.95 4.96 F
1102 2717 2.289694 CGGGAGAAGTGTGGTCTCATTT 60.290 50.000 4.01 0.0 42.85 2.32 F
1228 2843 3.702045 AGACACTATCAGTAGGCACTTCC 59.298 47.826 0.00 0.0 41.75 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2052 3675 0.905357 CATCCCCCGTCTCAAGTTCT 59.095 55.000 0.00 0.00 0.00 3.01 R
2098 4313 4.228210 TCTCCTTCACATTCCTTATGGCTT 59.772 41.667 0.00 0.00 38.64 4.35 R
2675 4899 2.086869 TGAAGTGCAGCTAGAATTGCC 58.913 47.619 10.55 4.27 39.54 4.52 R
2932 5160 6.153851 TCGGATATGTAGTTTCCAAACTCTCA 59.846 38.462 7.98 9.45 45.65 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.087646 GAGCTCTTTGCCTCCGATTTT 58.912 47.619 6.43 0.00 44.23 1.82
67 68 5.336372 CCCGCAAAAGATAATGTTTGGAGAA 60.336 40.000 0.00 0.00 35.66 2.87
80 81 2.660064 GGAGAAAGGCTCGCTCCCA 61.660 63.158 19.56 0.00 44.91 4.37
98 99 1.466186 AACCTGCCCCTTTCCTCCT 60.466 57.895 0.00 0.00 0.00 3.69
235 600 2.234296 CCTTTCCCTCCCCTGCAGT 61.234 63.158 13.81 0.00 0.00 4.40
323 688 1.227497 CATCCCTTCCAGCTCGCTC 60.227 63.158 0.00 0.00 0.00 5.03
387 752 0.610687 CTCCATCCCGCCTATCTTCC 59.389 60.000 0.00 0.00 0.00 3.46
449 814 4.635473 TCCATCTTCTTATTCCACTCCCT 58.365 43.478 0.00 0.00 0.00 4.20
491 857 3.971305 TCAGTTGTTCTGTTCTTCCCCTA 59.029 43.478 0.00 0.00 43.97 3.53
560 926 9.550406 CAATGAATTATTAAAGCCCATGTTCAT 57.450 29.630 0.00 0.00 35.87 2.57
594 960 1.367346 TGCTGATAAGTGGAACCCCA 58.633 50.000 0.00 0.00 40.95 4.96
751 1117 7.326063 GGTTATGTGACTAAAAATTGTGTGCTC 59.674 37.037 0.00 0.00 0.00 4.26
1060 2675 7.597369 AGTTGCGACTAACAAAAAGAAACTTTT 59.403 29.630 4.25 4.01 33.32 2.27
1102 2717 2.289694 CGGGAGAAGTGTGGTCTCATTT 60.290 50.000 4.01 0.00 42.85 2.32
1228 2843 3.702045 AGACACTATCAGTAGGCACTTCC 59.298 47.826 0.00 0.00 41.75 3.46
1370 2985 4.834496 AGATGGGTGTCATGTTGATGTTTT 59.166 37.500 0.00 0.00 35.97 2.43
1944 3567 7.277098 GCTGATTGTGAATCTAATTTTGTGCAT 59.723 33.333 0.00 0.00 38.72 3.96
2052 3675 9.383519 GAAGTTGACCATGAACTAGATGATTTA 57.616 33.333 0.00 0.00 33.20 1.40
2090 3713 6.073222 GGGGATGACGCTAACTTAATTACATG 60.073 42.308 0.00 0.00 0.00 3.21
2091 3714 6.073222 GGGATGACGCTAACTTAATTACATGG 60.073 42.308 0.00 0.00 0.00 3.66
2092 3715 6.704493 GGATGACGCTAACTTAATTACATGGA 59.296 38.462 0.00 0.00 0.00 3.41
2093 3716 7.225931 GGATGACGCTAACTTAATTACATGGAA 59.774 37.037 0.00 0.00 0.00 3.53
2675 4899 0.798776 CAAAAGCTACCACTCCTGCG 59.201 55.000 0.00 0.00 0.00 5.18
2684 4908 0.107703 CCACTCCTGCGGCAATTCTA 60.108 55.000 3.44 0.00 0.00 2.10
2760 4984 5.441718 TGGGAAGCTGATTCTTAATGAGT 57.558 39.130 5.56 0.00 38.07 3.41
2765 4989 7.336931 GGGAAGCTGATTCTTAATGAGTGTTTA 59.663 37.037 5.56 0.00 38.07 2.01
2931 5159 6.509418 AGAACTATGTGTTGTTGTTGTTGT 57.491 33.333 0.00 0.00 39.30 3.32
2932 5160 6.919721 AGAACTATGTGTTGTTGTTGTTGTT 58.080 32.000 0.00 0.00 39.30 2.83
2933 5161 6.806249 AGAACTATGTGTTGTTGTTGTTGTTG 59.194 34.615 0.00 0.00 39.30 3.33
3023 5251 6.526325 TCTGTTCGCATAATTATTGTTGTTGC 59.474 34.615 0.00 0.00 0.00 4.17
3349 5581 6.065374 ACAGAGGTATCGAATACAGACATCT 58.935 40.000 0.00 0.00 37.48 2.90
3363 5595 3.366121 CAGACATCTGAACACAGCGTTAG 59.634 47.826 2.51 0.00 46.59 2.34
3364 5596 2.069273 ACATCTGAACACAGCGTTAGC 58.931 47.619 0.00 0.00 38.19 3.09
3377 5609 3.201726 GCGTTAGCAATTGTCACATGT 57.798 42.857 7.40 0.00 44.35 3.21
3378 5610 3.564511 GCGTTAGCAATTGTCACATGTT 58.435 40.909 7.40 0.00 44.35 2.71
3379 5611 4.717991 GCGTTAGCAATTGTCACATGTTA 58.282 39.130 7.40 0.00 44.35 2.41
3380 5612 5.331902 GCGTTAGCAATTGTCACATGTTAT 58.668 37.500 7.40 0.00 44.35 1.89
3381 5613 5.227805 GCGTTAGCAATTGTCACATGTTATG 59.772 40.000 7.40 0.00 44.35 1.90
3382 5614 6.541969 CGTTAGCAATTGTCACATGTTATGA 58.458 36.000 7.40 0.00 0.00 2.15
3383 5615 7.020602 CGTTAGCAATTGTCACATGTTATGAA 58.979 34.615 7.40 0.00 0.00 2.57
3384 5616 7.536964 CGTTAGCAATTGTCACATGTTATGAAA 59.463 33.333 7.40 0.00 0.00 2.69
3385 5617 9.357652 GTTAGCAATTGTCACATGTTATGAAAT 57.642 29.630 7.40 0.00 0.00 2.17
3386 5618 9.571810 TTAGCAATTGTCACATGTTATGAAATC 57.428 29.630 7.40 0.00 0.00 2.17
3387 5619 7.833786 AGCAATTGTCACATGTTATGAAATCT 58.166 30.769 7.40 0.00 0.00 2.40
3388 5620 7.972277 AGCAATTGTCACATGTTATGAAATCTC 59.028 33.333 7.40 0.00 0.00 2.75
3389 5621 7.044510 GCAATTGTCACATGTTATGAAATCTCG 60.045 37.037 7.40 0.00 0.00 4.04
3390 5622 5.469373 TGTCACATGTTATGAAATCTCGC 57.531 39.130 0.00 0.00 0.00 5.03
3391 5623 4.934602 TGTCACATGTTATGAAATCTCGCA 59.065 37.500 0.00 0.00 0.00 5.10
3392 5624 5.411053 TGTCACATGTTATGAAATCTCGCAA 59.589 36.000 0.00 0.00 0.00 4.85
3393 5625 6.072783 TGTCACATGTTATGAAATCTCGCAAA 60.073 34.615 0.00 0.00 0.00 3.68
3394 5626 6.968904 GTCACATGTTATGAAATCTCGCAAAT 59.031 34.615 0.00 0.00 0.00 2.32
3395 5627 6.968335 TCACATGTTATGAAATCTCGCAAATG 59.032 34.615 0.00 0.00 0.00 2.32
3396 5628 6.197655 CACATGTTATGAAATCTCGCAAATGG 59.802 38.462 0.00 0.00 0.00 3.16
3397 5629 6.095300 ACATGTTATGAAATCTCGCAAATGGA 59.905 34.615 0.00 0.00 0.00 3.41
3398 5630 6.698008 TGTTATGAAATCTCGCAAATGGAT 57.302 33.333 0.00 0.00 0.00 3.41
3399 5631 6.497437 TGTTATGAAATCTCGCAAATGGATG 58.503 36.000 0.00 0.00 0.00 3.51
3400 5632 6.095300 TGTTATGAAATCTCGCAAATGGATGT 59.905 34.615 0.00 0.00 0.00 3.06
3401 5633 4.621068 TGAAATCTCGCAAATGGATGTC 57.379 40.909 0.00 0.00 0.00 3.06
3402 5634 4.009002 TGAAATCTCGCAAATGGATGTCA 58.991 39.130 0.00 0.00 33.06 3.58
3403 5635 4.458642 TGAAATCTCGCAAATGGATGTCAA 59.541 37.500 0.00 0.00 32.70 3.18
3404 5636 5.048154 TGAAATCTCGCAAATGGATGTCAAA 60.048 36.000 0.00 0.00 32.70 2.69
3405 5637 5.389859 AATCTCGCAAATGGATGTCAAAA 57.610 34.783 0.00 0.00 0.00 2.44
3406 5638 4.159377 TCTCGCAAATGGATGTCAAAAC 57.841 40.909 0.00 0.00 0.00 2.43
3407 5639 3.820467 TCTCGCAAATGGATGTCAAAACT 59.180 39.130 0.00 0.00 0.00 2.66
3408 5640 5.000591 TCTCGCAAATGGATGTCAAAACTA 58.999 37.500 0.00 0.00 0.00 2.24
3409 5641 5.041951 TCGCAAATGGATGTCAAAACTAC 57.958 39.130 0.00 0.00 0.00 2.73
3410 5642 4.517075 TCGCAAATGGATGTCAAAACTACA 59.483 37.500 0.00 0.00 0.00 2.74
3411 5643 5.182950 TCGCAAATGGATGTCAAAACTACAT 59.817 36.000 0.00 0.00 40.23 2.29
3412 5644 5.863397 CGCAAATGGATGTCAAAACTACATT 59.137 36.000 0.00 0.00 37.69 2.71
3413 5645 6.033831 CGCAAATGGATGTCAAAACTACATTC 59.966 38.462 0.00 0.00 37.69 2.67
3414 5646 7.092716 GCAAATGGATGTCAAAACTACATTCT 58.907 34.615 0.00 0.00 37.69 2.40
3415 5647 7.599998 GCAAATGGATGTCAAAACTACATTCTT 59.400 33.333 0.00 0.00 37.69 2.52
3416 5648 9.480053 CAAATGGATGTCAAAACTACATTCTTT 57.520 29.630 0.00 0.00 37.69 2.52
3421 5653 9.573133 GGATGTCAAAACTACATTCTTTAATGG 57.427 33.333 3.41 0.00 45.72 3.16
3460 5692 6.064846 GTTGTATATGATGCAACCAGAAGG 57.935 41.667 8.67 0.00 46.05 3.46
3478 5710 7.602753 CCAGAAGGTTTTGTTAATCCTAAAGG 58.397 38.462 0.00 0.00 33.28 3.11
3479 5711 7.232737 CCAGAAGGTTTTGTTAATCCTAAAGGT 59.767 37.037 0.00 0.00 33.28 3.50
3480 5712 9.292195 CAGAAGGTTTTGTTAATCCTAAAGGTA 57.708 33.333 0.00 0.00 33.28 3.08
3481 5713 9.293404 AGAAGGTTTTGTTAATCCTAAAGGTAC 57.707 33.333 0.00 0.00 33.28 3.34
3482 5714 9.293404 GAAGGTTTTGTTAATCCTAAAGGTACT 57.707 33.333 0.00 0.00 34.32 2.73
3494 5726 7.443259 TCCTAAAGGTACTAACAAAATGTGC 57.557 36.000 0.00 0.00 38.49 4.57
3495 5727 6.999272 TCCTAAAGGTACTAACAAAATGTGCA 59.001 34.615 0.00 0.00 38.49 4.57
3496 5728 7.502895 TCCTAAAGGTACTAACAAAATGTGCAA 59.497 33.333 0.00 0.00 38.49 4.08
3497 5729 7.807907 CCTAAAGGTACTAACAAAATGTGCAAG 59.192 37.037 0.00 0.00 38.49 4.01
3498 5730 5.121221 AGGTACTAACAAAATGTGCAAGC 57.879 39.130 0.00 0.00 36.02 4.01
3499 5731 4.827284 AGGTACTAACAAAATGTGCAAGCT 59.173 37.500 0.00 0.00 36.02 3.74
3500 5732 5.048713 AGGTACTAACAAAATGTGCAAGCTC 60.049 40.000 0.00 0.00 36.02 4.09
3501 5733 4.243007 ACTAACAAAATGTGCAAGCTCC 57.757 40.909 0.00 0.00 0.00 4.70
3502 5734 3.636300 ACTAACAAAATGTGCAAGCTCCA 59.364 39.130 0.00 0.00 0.00 3.86
3503 5735 3.540314 AACAAAATGTGCAAGCTCCAA 57.460 38.095 0.00 0.00 0.00 3.53
3504 5736 2.825205 ACAAAATGTGCAAGCTCCAAC 58.175 42.857 0.00 0.00 0.00 3.77
3505 5737 1.788308 CAAAATGTGCAAGCTCCAACG 59.212 47.619 0.00 0.00 0.00 4.10
3506 5738 1.317613 AAATGTGCAAGCTCCAACGA 58.682 45.000 0.00 0.00 0.00 3.85
3507 5739 1.538047 AATGTGCAAGCTCCAACGAT 58.462 45.000 0.00 0.00 0.00 3.73
3508 5740 1.089920 ATGTGCAAGCTCCAACGATC 58.910 50.000 0.00 0.00 0.00 3.69
3509 5741 0.955428 TGTGCAAGCTCCAACGATCC 60.955 55.000 0.00 0.00 0.00 3.36
3510 5742 0.955428 GTGCAAGCTCCAACGATCCA 60.955 55.000 0.00 0.00 0.00 3.41
3511 5743 0.035152 TGCAAGCTCCAACGATCCAT 60.035 50.000 0.00 0.00 0.00 3.41
3512 5744 0.659957 GCAAGCTCCAACGATCCATC 59.340 55.000 0.00 0.00 0.00 3.51
3513 5745 2.013563 GCAAGCTCCAACGATCCATCA 61.014 52.381 0.00 0.00 0.00 3.07
3514 5746 2.358957 CAAGCTCCAACGATCCATCAA 58.641 47.619 0.00 0.00 0.00 2.57
3515 5747 2.947652 CAAGCTCCAACGATCCATCAAT 59.052 45.455 0.00 0.00 0.00 2.57
3516 5748 2.569059 AGCTCCAACGATCCATCAATG 58.431 47.619 0.00 0.00 0.00 2.82
3517 5749 2.171237 AGCTCCAACGATCCATCAATGA 59.829 45.455 0.00 0.00 0.00 2.57
3518 5750 2.289002 GCTCCAACGATCCATCAATGAC 59.711 50.000 0.00 0.00 0.00 3.06
3519 5751 3.801698 CTCCAACGATCCATCAATGACT 58.198 45.455 0.00 0.00 0.00 3.41
3520 5752 4.740634 GCTCCAACGATCCATCAATGACTA 60.741 45.833 0.00 0.00 0.00 2.59
3521 5753 4.948847 TCCAACGATCCATCAATGACTAG 58.051 43.478 0.00 0.00 0.00 2.57
3522 5754 4.405680 TCCAACGATCCATCAATGACTAGT 59.594 41.667 0.00 0.00 0.00 2.57
3523 5755 4.509230 CCAACGATCCATCAATGACTAGTG 59.491 45.833 0.00 0.00 0.00 2.74
3524 5756 3.722147 ACGATCCATCAATGACTAGTGC 58.278 45.455 0.00 0.00 0.00 4.40
3525 5757 3.132824 ACGATCCATCAATGACTAGTGCA 59.867 43.478 0.00 0.00 0.00 4.57
3526 5758 4.122046 CGATCCATCAATGACTAGTGCAA 58.878 43.478 0.00 0.00 0.00 4.08
3527 5759 4.210746 CGATCCATCAATGACTAGTGCAAG 59.789 45.833 0.00 0.00 0.00 4.01
3528 5760 3.273434 TCCATCAATGACTAGTGCAAGC 58.727 45.455 0.00 0.00 0.00 4.01
3529 5761 3.011818 CCATCAATGACTAGTGCAAGCA 58.988 45.455 0.00 0.00 0.00 3.91
3530 5762 3.630769 CCATCAATGACTAGTGCAAGCAT 59.369 43.478 0.00 0.00 0.00 3.79
3531 5763 4.261072 CCATCAATGACTAGTGCAAGCATC 60.261 45.833 0.00 0.00 0.00 3.91
3532 5764 4.212143 TCAATGACTAGTGCAAGCATCT 57.788 40.909 0.00 0.45 0.00 2.90
3533 5765 4.186926 TCAATGACTAGTGCAAGCATCTC 58.813 43.478 0.00 0.00 0.00 2.75
3534 5766 2.284263 TGACTAGTGCAAGCATCTCG 57.716 50.000 0.00 0.00 0.00 4.04
3535 5767 1.134995 TGACTAGTGCAAGCATCTCGG 60.135 52.381 0.00 0.00 0.00 4.63
3536 5768 1.135139 GACTAGTGCAAGCATCTCGGA 59.865 52.381 0.00 0.00 0.00 4.55
3537 5769 1.135915 ACTAGTGCAAGCATCTCGGAG 59.864 52.381 0.00 0.00 0.00 4.63
3538 5770 1.135915 CTAGTGCAAGCATCTCGGAGT 59.864 52.381 4.69 0.00 0.00 3.85
3539 5771 0.322975 AGTGCAAGCATCTCGGAGTT 59.677 50.000 4.69 0.00 0.00 3.01
3540 5772 0.445436 GTGCAAGCATCTCGGAGTTG 59.555 55.000 10.96 10.96 0.00 3.16
3541 5773 0.674581 TGCAAGCATCTCGGAGTTGG 60.675 55.000 15.76 4.14 0.00 3.77
3542 5774 0.391661 GCAAGCATCTCGGAGTTGGA 60.392 55.000 15.76 0.00 0.00 3.53
3543 5775 1.945819 GCAAGCATCTCGGAGTTGGAA 60.946 52.381 15.76 0.00 0.00 3.53
3544 5776 2.636830 CAAGCATCTCGGAGTTGGAAT 58.363 47.619 15.76 0.00 0.00 3.01
3545 5777 3.797039 CAAGCATCTCGGAGTTGGAATA 58.203 45.455 15.76 0.00 0.00 1.75
3546 5778 4.384056 CAAGCATCTCGGAGTTGGAATAT 58.616 43.478 15.76 0.00 0.00 1.28
3547 5779 5.541845 CAAGCATCTCGGAGTTGGAATATA 58.458 41.667 15.76 0.00 0.00 0.86
3548 5780 5.140747 AGCATCTCGGAGTTGGAATATAC 57.859 43.478 15.76 0.43 0.00 1.47
3549 5781 3.921021 GCATCTCGGAGTTGGAATATACG 59.079 47.826 15.76 0.00 0.00 3.06
3550 5782 3.637998 TCTCGGAGTTGGAATATACGC 57.362 47.619 4.69 0.00 0.00 4.42
3551 5783 3.220110 TCTCGGAGTTGGAATATACGCT 58.780 45.455 4.69 0.00 0.00 5.07
3552 5784 3.635373 TCTCGGAGTTGGAATATACGCTT 59.365 43.478 4.69 0.00 0.00 4.68
3553 5785 4.098960 TCTCGGAGTTGGAATATACGCTTT 59.901 41.667 4.69 0.00 0.00 3.51
3554 5786 4.116961 TCGGAGTTGGAATATACGCTTTG 58.883 43.478 0.00 0.00 0.00 2.77
3555 5787 4.116961 CGGAGTTGGAATATACGCTTTGA 58.883 43.478 0.00 0.00 0.00 2.69
3556 5788 4.750098 CGGAGTTGGAATATACGCTTTGAT 59.250 41.667 0.00 0.00 0.00 2.57
3557 5789 5.333339 CGGAGTTGGAATATACGCTTTGATG 60.333 44.000 0.00 0.00 0.00 3.07
3558 5790 5.758296 GGAGTTGGAATATACGCTTTGATGA 59.242 40.000 0.00 0.00 0.00 2.92
3559 5791 6.073548 GGAGTTGGAATATACGCTTTGATGAG 60.074 42.308 0.00 0.00 0.00 2.90
3560 5792 6.349300 AGTTGGAATATACGCTTTGATGAGT 58.651 36.000 0.00 0.00 0.00 3.41
3561 5793 6.823689 AGTTGGAATATACGCTTTGATGAGTT 59.176 34.615 0.00 0.00 0.00 3.01
3562 5794 6.603237 TGGAATATACGCTTTGATGAGTTG 57.397 37.500 0.00 0.00 0.00 3.16
3563 5795 6.345298 TGGAATATACGCTTTGATGAGTTGA 58.655 36.000 0.00 0.00 0.00 3.18
3564 5796 6.992123 TGGAATATACGCTTTGATGAGTTGAT 59.008 34.615 0.00 0.00 0.00 2.57
3565 5797 7.171508 TGGAATATACGCTTTGATGAGTTGATC 59.828 37.037 0.00 0.00 0.00 2.92
3566 5798 7.171508 GGAATATACGCTTTGATGAGTTGATCA 59.828 37.037 0.00 0.00 43.70 2.92
3567 5799 8.437360 AATATACGCTTTGATGAGTTGATCAA 57.563 30.769 3.38 3.38 42.53 2.57
3568 5800 6.741992 ATACGCTTTGATGAGTTGATCAAA 57.258 33.333 10.35 6.58 45.72 2.69
3576 5808 6.628919 TGATGAGTTGATCAAAGCATATGG 57.371 37.500 18.83 0.00 42.53 2.74
3577 5809 6.124340 TGATGAGTTGATCAAAGCATATGGT 58.876 36.000 18.83 0.40 42.53 3.55
3578 5810 6.604396 TGATGAGTTGATCAAAGCATATGGTT 59.396 34.615 14.31 14.31 42.53 3.67
3579 5811 6.839124 TGAGTTGATCAAAGCATATGGTTT 57.161 33.333 23.71 23.71 45.40 3.27
3580 5812 7.230849 TGAGTTGATCAAAGCATATGGTTTT 57.769 32.000 26.13 15.51 43.02 2.43
3581 5813 8.347004 TGAGTTGATCAAAGCATATGGTTTTA 57.653 30.769 26.13 20.29 43.02 1.52
3582 5814 8.970020 TGAGTTGATCAAAGCATATGGTTTTAT 58.030 29.630 26.13 23.49 43.02 1.40
3587 5819 9.625747 TGATCAAAGCATATGGTTTTATACAGA 57.374 29.630 26.13 19.64 43.02 3.41
3588 5820 9.884465 GATCAAAGCATATGGTTTTATACAGAC 57.116 33.333 26.13 10.87 43.02 3.51
3589 5821 9.632638 ATCAAAGCATATGGTTTTATACAGACT 57.367 29.630 26.13 9.75 43.02 3.24
3590 5822 9.461312 TCAAAGCATATGGTTTTATACAGACTT 57.539 29.630 26.13 4.21 43.02 3.01
3594 5826 8.686334 AGCATATGGTTTTATACAGACTTTTGG 58.314 33.333 0.40 0.00 0.00 3.28
3595 5827 8.682710 GCATATGGTTTTATACAGACTTTTGGA 58.317 33.333 4.56 0.00 0.00 3.53
3599 5831 7.947282 TGGTTTTATACAGACTTTTGGAAAGG 58.053 34.615 5.52 0.00 0.00 3.11
3600 5832 6.866770 GGTTTTATACAGACTTTTGGAAAGGC 59.133 38.462 5.52 2.00 0.00 4.35
3601 5833 6.584185 TTTATACAGACTTTTGGAAAGGCC 57.416 37.500 0.00 0.00 37.10 5.19
3602 5834 2.755952 ACAGACTTTTGGAAAGGCCT 57.244 45.000 0.00 0.00 37.63 5.19
3603 5835 2.310538 ACAGACTTTTGGAAAGGCCTG 58.689 47.619 5.69 16.37 37.63 4.85
3604 5836 2.310538 CAGACTTTTGGAAAGGCCTGT 58.689 47.619 5.69 0.00 37.63 4.00
3605 5837 3.117663 ACAGACTTTTGGAAAGGCCTGTA 60.118 43.478 5.69 0.00 35.28 2.74
3606 5838 4.082125 CAGACTTTTGGAAAGGCCTGTAT 58.918 43.478 5.69 0.00 37.63 2.29
3607 5839 4.524328 CAGACTTTTGGAAAGGCCTGTATT 59.476 41.667 5.69 0.00 37.63 1.89
3608 5840 5.011023 CAGACTTTTGGAAAGGCCTGTATTT 59.989 40.000 5.69 0.00 37.63 1.40
3609 5841 6.208599 CAGACTTTTGGAAAGGCCTGTATTTA 59.791 38.462 5.69 0.00 37.63 1.40
3610 5842 6.208797 AGACTTTTGGAAAGGCCTGTATTTAC 59.791 38.462 5.69 0.00 37.63 2.01
3611 5843 5.836358 ACTTTTGGAAAGGCCTGTATTTACA 59.164 36.000 5.69 0.00 37.63 2.41
3612 5844 6.325286 ACTTTTGGAAAGGCCTGTATTTACAA 59.675 34.615 5.69 7.33 37.43 2.41
3613 5845 5.975693 TTGGAAAGGCCTGTATTTACAAG 57.024 39.130 5.69 0.00 34.96 3.16
3614 5846 5.249780 TGGAAAGGCCTGTATTTACAAGA 57.750 39.130 5.69 0.00 35.50 3.02
3615 5847 5.636123 TGGAAAGGCCTGTATTTACAAGAA 58.364 37.500 5.69 0.00 35.50 2.52
3616 5848 6.071984 TGGAAAGGCCTGTATTTACAAGAAA 58.928 36.000 5.69 0.00 35.50 2.52
3617 5849 6.208599 TGGAAAGGCCTGTATTTACAAGAAAG 59.791 38.462 5.69 0.00 35.50 2.62
3618 5850 6.208797 GGAAAGGCCTGTATTTACAAGAAAGT 59.791 38.462 5.69 0.00 35.50 2.66
3619 5851 6.575162 AAGGCCTGTATTTACAAGAAAGTG 57.425 37.500 5.69 0.00 35.50 3.16
3620 5852 5.876357 AGGCCTGTATTTACAAGAAAGTGA 58.124 37.500 3.11 0.00 35.50 3.41
3621 5853 5.940470 AGGCCTGTATTTACAAGAAAGTGAG 59.060 40.000 3.11 0.00 35.50 3.51
3622 5854 5.705905 GGCCTGTATTTACAAGAAAGTGAGT 59.294 40.000 0.00 0.00 35.50 3.41
3623 5855 6.348540 GGCCTGTATTTACAAGAAAGTGAGTG 60.349 42.308 0.00 0.00 35.50 3.51
3624 5856 6.348540 GCCTGTATTTACAAGAAAGTGAGTGG 60.349 42.308 0.00 0.00 35.50 4.00
3625 5857 6.149474 CCTGTATTTACAAGAAAGTGAGTGGG 59.851 42.308 0.00 0.00 35.50 4.61
3626 5858 6.833041 TGTATTTACAAGAAAGTGAGTGGGA 58.167 36.000 0.00 0.00 32.40 4.37
3627 5859 6.934645 TGTATTTACAAGAAAGTGAGTGGGAG 59.065 38.462 0.00 0.00 32.40 4.30
3628 5860 2.262423 ACAAGAAAGTGAGTGGGAGC 57.738 50.000 0.00 0.00 0.00 4.70
3629 5861 1.771255 ACAAGAAAGTGAGTGGGAGCT 59.229 47.619 0.00 0.00 0.00 4.09
3630 5862 2.224402 ACAAGAAAGTGAGTGGGAGCTC 60.224 50.000 4.71 4.71 36.12 4.09
3631 5863 2.022718 AGAAAGTGAGTGGGAGCTCT 57.977 50.000 14.64 0.00 36.51 4.09
3632 5864 1.622811 AGAAAGTGAGTGGGAGCTCTG 59.377 52.381 14.64 0.00 36.51 3.35
3633 5865 1.346068 GAAAGTGAGTGGGAGCTCTGT 59.654 52.381 14.64 0.00 36.51 3.41
3634 5866 2.310779 AAGTGAGTGGGAGCTCTGTA 57.689 50.000 14.64 0.00 36.51 2.74
3635 5867 1.846007 AGTGAGTGGGAGCTCTGTAG 58.154 55.000 14.64 0.00 36.51 2.74
3657 5889 9.723601 TGTAGCATTTCTGATATTATATGTGCA 57.276 29.630 0.00 0.00 0.00 4.57
3660 5892 9.511272 AGCATTTCTGATATTATATGTGCAAGA 57.489 29.630 0.00 0.00 0.00 3.02
3661 5893 9.552114 GCATTTCTGATATTATATGTGCAAGAC 57.448 33.333 0.00 0.00 0.00 3.01
3675 5907 5.712004 TGTGCAAGACATATTGTTGATTGG 58.288 37.500 0.00 0.00 32.56 3.16
3676 5908 5.476254 TGTGCAAGACATATTGTTGATTGGA 59.524 36.000 0.00 0.00 32.56 3.53
3677 5909 6.015603 TGTGCAAGACATATTGTTGATTGGAA 60.016 34.615 0.00 0.00 32.56 3.53
3678 5910 6.867816 GTGCAAGACATATTGTTGATTGGAAA 59.132 34.615 0.00 0.00 32.56 3.13
3679 5911 7.546667 GTGCAAGACATATTGTTGATTGGAAAT 59.453 33.333 0.00 0.00 32.56 2.17
3680 5912 7.546316 TGCAAGACATATTGTTGATTGGAAATG 59.454 33.333 0.00 0.00 32.56 2.32
3681 5913 7.760794 GCAAGACATATTGTTGATTGGAAATGA 59.239 33.333 0.00 0.00 32.56 2.57
3682 5914 9.811995 CAAGACATATTGTTGATTGGAAATGAT 57.188 29.630 0.00 0.00 0.00 2.45
3744 5976 7.755582 AAAAGTTTTTCAATGAAAGACCTCG 57.244 32.000 21.01 0.00 37.35 4.63
3745 5977 5.438761 AGTTTTTCAATGAAAGACCTCGG 57.561 39.130 21.01 0.00 37.35 4.63
3746 5978 4.887655 AGTTTTTCAATGAAAGACCTCGGT 59.112 37.500 21.01 4.53 37.35 4.69
3747 5979 4.829064 TTTTCAATGAAAGACCTCGGTG 57.171 40.909 8.51 0.00 32.93 4.94
3748 5980 3.762407 TTCAATGAAAGACCTCGGTGA 57.238 42.857 0.00 0.00 0.00 4.02
3749 5981 3.762407 TCAATGAAAGACCTCGGTGAA 57.238 42.857 0.00 0.00 0.00 3.18
3750 5982 3.664107 TCAATGAAAGACCTCGGTGAAG 58.336 45.455 0.00 0.00 0.00 3.02
3751 5983 2.100605 ATGAAAGACCTCGGTGAAGC 57.899 50.000 0.00 0.00 0.00 3.86
3752 5984 1.048601 TGAAAGACCTCGGTGAAGCT 58.951 50.000 0.00 0.00 0.00 3.74
3753 5985 1.270305 TGAAAGACCTCGGTGAAGCTG 60.270 52.381 0.00 0.00 0.00 4.24
3754 5986 0.603975 AAAGACCTCGGTGAAGCTGC 60.604 55.000 0.00 0.00 0.00 5.25
3755 5987 1.476007 AAGACCTCGGTGAAGCTGCT 61.476 55.000 0.00 0.00 0.00 4.24
3756 5988 1.004440 GACCTCGGTGAAGCTGCTT 60.004 57.895 15.92 15.92 0.00 3.91
3757 5989 0.246635 GACCTCGGTGAAGCTGCTTA 59.753 55.000 15.95 0.00 0.00 3.09
3758 5990 0.037232 ACCTCGGTGAAGCTGCTTAC 60.037 55.000 15.95 12.98 0.00 2.34
3759 5991 0.037326 CCTCGGTGAAGCTGCTTACA 60.037 55.000 15.95 12.03 0.00 2.41
3760 5992 1.406069 CCTCGGTGAAGCTGCTTACAT 60.406 52.381 15.95 0.00 0.00 2.29
3761 5993 2.159099 CCTCGGTGAAGCTGCTTACATA 60.159 50.000 15.95 0.00 0.00 2.29
3762 5994 3.493350 CCTCGGTGAAGCTGCTTACATAT 60.493 47.826 15.95 0.00 0.00 1.78
3763 5995 4.122776 CTCGGTGAAGCTGCTTACATATT 58.877 43.478 15.95 0.00 0.00 1.28
3764 5996 3.871006 TCGGTGAAGCTGCTTACATATTG 59.129 43.478 15.95 2.34 0.00 1.90
3765 5997 3.871006 CGGTGAAGCTGCTTACATATTGA 59.129 43.478 15.95 0.00 0.00 2.57
3766 5998 4.025396 CGGTGAAGCTGCTTACATATTGAG 60.025 45.833 15.95 0.00 0.00 3.02
3767 5999 4.260948 GGTGAAGCTGCTTACATATTGAGC 60.261 45.833 15.95 0.00 36.95 4.26
3768 6000 4.333649 GTGAAGCTGCTTACATATTGAGCA 59.666 41.667 15.95 1.92 43.56 4.26
3769 6001 5.008415 GTGAAGCTGCTTACATATTGAGCAT 59.992 40.000 15.95 0.00 44.56 3.79
3770 6002 5.237996 TGAAGCTGCTTACATATTGAGCATC 59.762 40.000 15.95 0.00 44.56 3.91
3788 6020 8.647256 TGAGCATCAAGATCTATTGAGATAGA 57.353 34.615 0.00 0.00 45.97 1.98
3799 6031 7.517614 TCTATTGAGATAGATCAAGACGCTT 57.482 36.000 0.00 0.00 42.20 4.68
3800 6032 7.366513 TCTATTGAGATAGATCAAGACGCTTG 58.633 38.462 11.78 11.78 42.20 4.01
3801 6033 5.582689 TTGAGATAGATCAAGACGCTTGA 57.417 39.130 19.64 19.64 34.31 3.02
3802 6034 5.781210 TGAGATAGATCAAGACGCTTGAT 57.219 39.130 25.15 25.15 41.43 2.57
3803 6035 6.884280 TGAGATAGATCAAGACGCTTGATA 57.116 37.500 25.02 16.13 39.08 2.15
3804 6036 7.277174 TGAGATAGATCAAGACGCTTGATAA 57.723 36.000 25.02 19.12 39.08 1.75
3805 6037 7.366513 TGAGATAGATCAAGACGCTTGATAAG 58.633 38.462 25.02 2.63 39.08 1.73
3806 6038 7.013750 TGAGATAGATCAAGACGCTTGATAAGT 59.986 37.037 25.02 17.98 39.08 2.24
3807 6039 7.721402 AGATAGATCAAGACGCTTGATAAGTT 58.279 34.615 25.02 16.81 39.08 2.66
3808 6040 8.200792 AGATAGATCAAGACGCTTGATAAGTTT 58.799 33.333 25.02 13.99 39.08 2.66
3809 6041 8.723942 ATAGATCAAGACGCTTGATAAGTTTT 57.276 30.769 25.02 10.49 39.08 2.43
3810 6042 7.440523 AGATCAAGACGCTTGATAAGTTTTT 57.559 32.000 25.02 9.95 39.08 1.94
3811 6043 7.522374 AGATCAAGACGCTTGATAAGTTTTTC 58.478 34.615 25.02 15.75 39.08 2.29
3812 6044 6.612247 TCAAGACGCTTGATAAGTTTTTCA 57.388 33.333 15.33 0.00 0.00 2.69
3813 6045 7.022055 TCAAGACGCTTGATAAGTTTTTCAA 57.978 32.000 15.33 2.19 0.00 2.69
3814 6046 7.648142 TCAAGACGCTTGATAAGTTTTTCAAT 58.352 30.769 15.33 0.00 31.83 2.57
3815 6047 8.779303 TCAAGACGCTTGATAAGTTTTTCAATA 58.221 29.630 15.33 0.00 31.83 1.90
3816 6048 9.393249 CAAGACGCTTGATAAGTTTTTCAATAA 57.607 29.630 12.43 0.00 31.83 1.40
3817 6049 9.612620 AAGACGCTTGATAAGTTTTTCAATAAG 57.387 29.630 2.49 0.00 31.83 1.73
3818 6050 8.784043 AGACGCTTGATAAGTTTTTCAATAAGT 58.216 29.630 2.49 3.69 31.83 2.24
3820 6052 9.821662 ACGCTTGATAAGTTTTTCAATAAGTAC 57.178 29.630 2.49 0.00 31.83 2.73
3821 6053 9.820229 CGCTTGATAAGTTTTTCAATAAGTACA 57.180 29.630 0.00 0.00 31.83 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.480954 GGGACTAGGTCAATTCGAGCA 59.519 52.381 0.00 0.00 44.97 4.26
67 68 2.930562 AGGTTGGGAGCGAGCCTT 60.931 61.111 0.00 0.00 0.00 4.35
80 81 1.466186 AGGAGGAAAGGGGCAGGTT 60.466 57.895 0.00 0.00 0.00 3.50
125 135 1.344953 TGGGGATGAATACCTGCGCT 61.345 55.000 9.73 0.00 0.00 5.92
150 160 3.866582 GGAGGAGGTCCATGGCGG 61.867 72.222 6.96 0.00 46.10 6.13
235 600 4.087892 GCGGCAGAGGAAGGAGCA 62.088 66.667 0.00 0.00 0.00 4.26
298 663 2.002977 CTGGAAGGGATGGAGGCCA 61.003 63.158 5.01 0.00 38.19 5.36
387 752 1.627834 GGCAGAGGATAAGGGGATGAG 59.372 57.143 0.00 0.00 0.00 2.90
449 814 5.132043 TGAAAAGAAAGAAGGGGGTACAA 57.868 39.130 0.00 0.00 0.00 2.41
512 878 3.214328 GAGCAGAACAAGGGAAGAACAA 58.786 45.455 0.00 0.00 0.00 2.83
594 960 3.964031 CTCATACCTTAACTCAGCCTCCT 59.036 47.826 0.00 0.00 0.00 3.69
751 1117 7.529158 TCATGTCAATTTTATGCTATATGGCG 58.471 34.615 6.57 0.00 34.52 5.69
1228 2843 1.821216 ATGGCTGTTAACACGGAAGG 58.179 50.000 3.59 0.00 0.00 3.46
1370 2985 3.117701 TCCTTGGTCAGATGGAACAACAA 60.118 43.478 0.00 0.00 45.96 2.83
1944 3567 8.391859 ACACAACACGCATTAATAATTCGAATA 58.608 29.630 11.83 0.48 31.94 1.75
2052 3675 0.905357 CATCCCCCGTCTCAAGTTCT 59.095 55.000 0.00 0.00 0.00 3.01
2090 3713 4.646492 ACATTCCTTATGGCTTCACATTCC 59.354 41.667 0.00 0.00 38.64 3.01
2091 3714 5.357878 TCACATTCCTTATGGCTTCACATTC 59.642 40.000 0.00 0.00 38.64 2.67
2092 3715 5.263599 TCACATTCCTTATGGCTTCACATT 58.736 37.500 0.00 0.00 38.64 2.71
2093 3716 4.858850 TCACATTCCTTATGGCTTCACAT 58.141 39.130 0.00 0.00 38.64 3.21
2098 4313 4.228210 TCTCCTTCACATTCCTTATGGCTT 59.772 41.667 0.00 0.00 38.64 4.35
2675 4899 2.086869 TGAAGTGCAGCTAGAATTGCC 58.913 47.619 10.55 4.27 39.54 4.52
2931 5159 6.816640 CGGATATGTAGTTTCCAAACTCTCAA 59.183 38.462 7.98 2.87 45.65 3.02
2932 5160 6.153851 TCGGATATGTAGTTTCCAAACTCTCA 59.846 38.462 7.98 9.45 45.65 3.27
2933 5161 6.570692 TCGGATATGTAGTTTCCAAACTCTC 58.429 40.000 7.98 4.61 45.65 3.20
3349 5581 2.616376 ACAATTGCTAACGCTGTGTTCA 59.384 40.909 10.24 0.55 42.09 3.18
3363 5595 7.044510 CGAGATTTCATAACATGTGACAATTGC 60.045 37.037 5.05 0.00 0.00 3.56
3364 5596 7.044510 GCGAGATTTCATAACATGTGACAATTG 60.045 37.037 3.24 3.24 0.00 2.32
3365 5597 6.968904 GCGAGATTTCATAACATGTGACAATT 59.031 34.615 0.00 0.00 0.00 2.32
3366 5598 6.093909 TGCGAGATTTCATAACATGTGACAAT 59.906 34.615 0.00 0.00 0.00 2.71
3367 5599 5.411053 TGCGAGATTTCATAACATGTGACAA 59.589 36.000 0.00 0.00 0.00 3.18
3368 5600 4.934602 TGCGAGATTTCATAACATGTGACA 59.065 37.500 0.00 0.00 0.00 3.58
3369 5601 5.469373 TGCGAGATTTCATAACATGTGAC 57.531 39.130 0.00 0.00 0.00 3.67
3370 5602 6.493449 TTTGCGAGATTTCATAACATGTGA 57.507 33.333 0.00 0.00 0.00 3.58
3371 5603 6.197655 CCATTTGCGAGATTTCATAACATGTG 59.802 38.462 0.00 0.00 0.00 3.21
3372 5604 6.095300 TCCATTTGCGAGATTTCATAACATGT 59.905 34.615 0.00 0.00 0.00 3.21
3373 5605 6.497437 TCCATTTGCGAGATTTCATAACATG 58.503 36.000 0.00 0.00 0.00 3.21
3374 5606 6.698008 TCCATTTGCGAGATTTCATAACAT 57.302 33.333 0.00 0.00 0.00 2.71
3375 5607 6.095300 ACATCCATTTGCGAGATTTCATAACA 59.905 34.615 0.00 0.00 0.00 2.41
3376 5608 6.498304 ACATCCATTTGCGAGATTTCATAAC 58.502 36.000 0.00 0.00 0.00 1.89
3377 5609 6.318396 TGACATCCATTTGCGAGATTTCATAA 59.682 34.615 0.00 0.00 0.00 1.90
3378 5610 5.821995 TGACATCCATTTGCGAGATTTCATA 59.178 36.000 0.00 0.00 0.00 2.15
3379 5611 4.641541 TGACATCCATTTGCGAGATTTCAT 59.358 37.500 0.00 0.00 0.00 2.57
3380 5612 4.009002 TGACATCCATTTGCGAGATTTCA 58.991 39.130 0.00 0.00 0.00 2.69
3381 5613 4.621068 TGACATCCATTTGCGAGATTTC 57.379 40.909 0.00 0.00 0.00 2.17
3382 5614 5.389859 TTTGACATCCATTTGCGAGATTT 57.610 34.783 0.00 0.00 0.00 2.17
3383 5615 5.047802 AGTTTTGACATCCATTTGCGAGATT 60.048 36.000 0.00 0.00 0.00 2.40
3384 5616 4.460382 AGTTTTGACATCCATTTGCGAGAT 59.540 37.500 0.00 0.00 0.00 2.75
3385 5617 3.820467 AGTTTTGACATCCATTTGCGAGA 59.180 39.130 0.00 0.00 0.00 4.04
3386 5618 4.164822 AGTTTTGACATCCATTTGCGAG 57.835 40.909 0.00 0.00 0.00 5.03
3387 5619 4.517075 TGTAGTTTTGACATCCATTTGCGA 59.483 37.500 0.00 0.00 0.00 5.10
3388 5620 4.793071 TGTAGTTTTGACATCCATTTGCG 58.207 39.130 0.00 0.00 0.00 4.85
3389 5621 7.092716 AGAATGTAGTTTTGACATCCATTTGC 58.907 34.615 0.00 0.00 36.50 3.68
3390 5622 9.480053 AAAGAATGTAGTTTTGACATCCATTTG 57.520 29.630 0.00 0.00 36.50 2.32
3395 5627 9.573133 CCATTAAAGAATGTAGTTTTGACATCC 57.427 33.333 0.00 0.00 40.87 3.51
3428 5660 9.109393 GGTTGCATCATATACAACTCTTCTTTA 57.891 33.333 5.23 0.00 42.55 1.85
3429 5661 7.611467 TGGTTGCATCATATACAACTCTTCTTT 59.389 33.333 5.23 0.00 42.55 2.52
3430 5662 7.112122 TGGTTGCATCATATACAACTCTTCTT 58.888 34.615 5.23 0.00 42.55 2.52
3431 5663 6.653020 TGGTTGCATCATATACAACTCTTCT 58.347 36.000 5.23 0.00 42.55 2.85
3432 5664 6.763135 TCTGGTTGCATCATATACAACTCTTC 59.237 38.462 5.23 0.00 42.55 2.87
3433 5665 6.653020 TCTGGTTGCATCATATACAACTCTT 58.347 36.000 5.23 0.00 42.55 2.85
3434 5666 6.239217 TCTGGTTGCATCATATACAACTCT 57.761 37.500 5.23 0.00 42.55 3.24
3435 5667 6.017605 CCTTCTGGTTGCATCATATACAACTC 60.018 42.308 5.23 0.00 42.55 3.01
3436 5668 5.824624 CCTTCTGGTTGCATCATATACAACT 59.175 40.000 5.23 0.00 42.55 3.16
3437 5669 5.590259 ACCTTCTGGTTGCATCATATACAAC 59.410 40.000 0.00 0.00 46.05 3.32
3438 5670 5.754782 ACCTTCTGGTTGCATCATATACAA 58.245 37.500 0.00 0.00 46.05 2.41
3439 5671 5.372343 ACCTTCTGGTTGCATCATATACA 57.628 39.130 0.00 0.00 46.05 2.29
3452 5684 7.232737 CCTTTAGGATTAACAAAACCTTCTGGT 59.767 37.037 0.00 0.00 43.13 4.00
3453 5685 7.232737 ACCTTTAGGATTAACAAAACCTTCTGG 59.767 37.037 2.06 0.00 38.94 3.86
3454 5686 8.178313 ACCTTTAGGATTAACAAAACCTTCTG 57.822 34.615 2.06 0.00 38.94 3.02
3455 5687 9.293404 GTACCTTTAGGATTAACAAAACCTTCT 57.707 33.333 2.06 0.00 38.94 2.85
3456 5688 9.293404 AGTACCTTTAGGATTAACAAAACCTTC 57.707 33.333 2.06 0.00 38.94 3.46
3468 5700 8.520351 GCACATTTTGTTAGTACCTTTAGGATT 58.480 33.333 2.06 0.00 38.94 3.01
3469 5701 7.668052 TGCACATTTTGTTAGTACCTTTAGGAT 59.332 33.333 2.06 0.00 38.94 3.24
3470 5702 6.999272 TGCACATTTTGTTAGTACCTTTAGGA 59.001 34.615 2.06 0.00 38.94 2.94
3471 5703 7.209471 TGCACATTTTGTTAGTACCTTTAGG 57.791 36.000 0.00 0.00 42.17 2.69
3472 5704 7.326063 GCTTGCACATTTTGTTAGTACCTTTAG 59.674 37.037 0.00 0.00 0.00 1.85
3473 5705 7.013846 AGCTTGCACATTTTGTTAGTACCTTTA 59.986 33.333 0.00 0.00 0.00 1.85
3474 5706 5.983118 GCTTGCACATTTTGTTAGTACCTTT 59.017 36.000 0.00 0.00 0.00 3.11
3475 5707 5.301805 AGCTTGCACATTTTGTTAGTACCTT 59.698 36.000 0.00 0.00 0.00 3.50
3476 5708 4.827284 AGCTTGCACATTTTGTTAGTACCT 59.173 37.500 0.00 0.00 0.00 3.08
3477 5709 5.121221 AGCTTGCACATTTTGTTAGTACC 57.879 39.130 0.00 0.00 0.00 3.34
3478 5710 5.154222 GGAGCTTGCACATTTTGTTAGTAC 58.846 41.667 0.00 0.00 0.00 2.73
3479 5711 4.824537 TGGAGCTTGCACATTTTGTTAGTA 59.175 37.500 0.00 0.00 0.00 1.82
3480 5712 3.636300 TGGAGCTTGCACATTTTGTTAGT 59.364 39.130 0.00 0.00 0.00 2.24
3481 5713 4.241590 TGGAGCTTGCACATTTTGTTAG 57.758 40.909 0.00 0.00 0.00 2.34
3482 5714 4.367450 GTTGGAGCTTGCACATTTTGTTA 58.633 39.130 0.00 0.00 0.00 2.41
3483 5715 3.197265 GTTGGAGCTTGCACATTTTGTT 58.803 40.909 0.00 0.00 0.00 2.83
3484 5716 2.799207 CGTTGGAGCTTGCACATTTTGT 60.799 45.455 0.00 0.00 0.00 2.83
3485 5717 1.788308 CGTTGGAGCTTGCACATTTTG 59.212 47.619 0.00 0.00 0.00 2.44
3486 5718 1.680735 TCGTTGGAGCTTGCACATTTT 59.319 42.857 0.00 0.00 0.00 1.82
3487 5719 1.317613 TCGTTGGAGCTTGCACATTT 58.682 45.000 0.00 0.00 0.00 2.32
3488 5720 1.470098 GATCGTTGGAGCTTGCACATT 59.530 47.619 0.00 0.00 0.00 2.71
3489 5721 1.089920 GATCGTTGGAGCTTGCACAT 58.910 50.000 0.00 0.00 0.00 3.21
3490 5722 0.955428 GGATCGTTGGAGCTTGCACA 60.955 55.000 0.00 0.00 0.00 4.57
3491 5723 0.955428 TGGATCGTTGGAGCTTGCAC 60.955 55.000 0.00 0.00 0.00 4.57
3492 5724 0.035152 ATGGATCGTTGGAGCTTGCA 60.035 50.000 0.00 0.00 0.00 4.08
3493 5725 0.659957 GATGGATCGTTGGAGCTTGC 59.340 55.000 0.00 0.00 0.00 4.01
3494 5726 2.028420 TGATGGATCGTTGGAGCTTG 57.972 50.000 0.00 0.00 0.00 4.01
3495 5727 2.787473 TTGATGGATCGTTGGAGCTT 57.213 45.000 0.00 0.00 0.00 3.74
3496 5728 2.171237 TCATTGATGGATCGTTGGAGCT 59.829 45.455 0.00 0.00 0.00 4.09
3497 5729 2.289002 GTCATTGATGGATCGTTGGAGC 59.711 50.000 0.00 0.00 0.00 4.70
3498 5730 3.801698 AGTCATTGATGGATCGTTGGAG 58.198 45.455 0.00 0.00 0.00 3.86
3499 5731 3.912496 AGTCATTGATGGATCGTTGGA 57.088 42.857 0.00 0.00 0.00 3.53
3500 5732 4.509230 CACTAGTCATTGATGGATCGTTGG 59.491 45.833 0.00 0.00 0.00 3.77
3501 5733 4.025396 GCACTAGTCATTGATGGATCGTTG 60.025 45.833 0.00 0.00 0.00 4.10
3502 5734 4.122776 GCACTAGTCATTGATGGATCGTT 58.877 43.478 0.00 0.00 0.00 3.85
3503 5735 3.132824 TGCACTAGTCATTGATGGATCGT 59.867 43.478 0.00 0.00 0.00 3.73
3504 5736 3.721035 TGCACTAGTCATTGATGGATCG 58.279 45.455 0.00 0.00 0.00 3.69
3505 5737 4.024218 GCTTGCACTAGTCATTGATGGATC 60.024 45.833 0.00 0.00 0.00 3.36
3506 5738 3.881688 GCTTGCACTAGTCATTGATGGAT 59.118 43.478 0.00 0.00 0.00 3.41
3507 5739 3.273434 GCTTGCACTAGTCATTGATGGA 58.727 45.455 0.00 0.00 0.00 3.41
3508 5740 3.011818 TGCTTGCACTAGTCATTGATGG 58.988 45.455 0.00 0.00 0.00 3.51
3509 5741 4.575236 AGATGCTTGCACTAGTCATTGATG 59.425 41.667 0.00 0.00 0.00 3.07
3510 5742 4.778579 AGATGCTTGCACTAGTCATTGAT 58.221 39.130 0.00 0.00 0.00 2.57
3511 5743 4.186926 GAGATGCTTGCACTAGTCATTGA 58.813 43.478 0.00 0.00 0.00 2.57
3512 5744 3.001026 CGAGATGCTTGCACTAGTCATTG 59.999 47.826 0.00 0.00 0.00 2.82
3513 5745 3.193263 CGAGATGCTTGCACTAGTCATT 58.807 45.455 0.00 0.00 0.00 2.57
3514 5746 2.482664 CCGAGATGCTTGCACTAGTCAT 60.483 50.000 0.00 0.00 0.00 3.06
3515 5747 1.134995 CCGAGATGCTTGCACTAGTCA 60.135 52.381 0.00 0.00 0.00 3.41
3516 5748 1.135139 TCCGAGATGCTTGCACTAGTC 59.865 52.381 0.00 0.00 0.00 2.59
3517 5749 1.135915 CTCCGAGATGCTTGCACTAGT 59.864 52.381 0.00 0.00 0.00 2.57
3518 5750 1.135915 ACTCCGAGATGCTTGCACTAG 59.864 52.381 1.33 0.00 0.00 2.57
3519 5751 1.186200 ACTCCGAGATGCTTGCACTA 58.814 50.000 1.33 0.00 0.00 2.74
3520 5752 0.322975 AACTCCGAGATGCTTGCACT 59.677 50.000 1.33 0.00 0.00 4.40
3521 5753 0.445436 CAACTCCGAGATGCTTGCAC 59.555 55.000 1.33 0.00 0.00 4.57
3522 5754 0.674581 CCAACTCCGAGATGCTTGCA 60.675 55.000 1.33 0.00 0.00 4.08
3523 5755 0.391661 TCCAACTCCGAGATGCTTGC 60.392 55.000 1.33 0.00 0.00 4.01
3524 5756 2.099141 TTCCAACTCCGAGATGCTTG 57.901 50.000 1.33 0.00 0.00 4.01
3525 5757 4.696479 ATATTCCAACTCCGAGATGCTT 57.304 40.909 1.33 0.00 0.00 3.91
3526 5758 4.321304 CGTATATTCCAACTCCGAGATGCT 60.321 45.833 1.33 0.00 0.00 3.79
3527 5759 3.921021 CGTATATTCCAACTCCGAGATGC 59.079 47.826 1.33 0.00 0.00 3.91
3528 5760 3.921021 GCGTATATTCCAACTCCGAGATG 59.079 47.826 1.33 0.00 0.00 2.90
3529 5761 3.827302 AGCGTATATTCCAACTCCGAGAT 59.173 43.478 1.33 0.00 0.00 2.75
3530 5762 3.220110 AGCGTATATTCCAACTCCGAGA 58.780 45.455 1.33 0.00 0.00 4.04
3531 5763 3.644884 AGCGTATATTCCAACTCCGAG 57.355 47.619 0.00 0.00 0.00 4.63
3532 5764 4.116961 CAAAGCGTATATTCCAACTCCGA 58.883 43.478 0.00 0.00 0.00 4.55
3533 5765 4.116961 TCAAAGCGTATATTCCAACTCCG 58.883 43.478 0.00 0.00 0.00 4.63
3534 5766 5.758296 TCATCAAAGCGTATATTCCAACTCC 59.242 40.000 0.00 0.00 0.00 3.85
3535 5767 6.480320 ACTCATCAAAGCGTATATTCCAACTC 59.520 38.462 0.00 0.00 0.00 3.01
3536 5768 6.349300 ACTCATCAAAGCGTATATTCCAACT 58.651 36.000 0.00 0.00 0.00 3.16
3537 5769 6.604735 ACTCATCAAAGCGTATATTCCAAC 57.395 37.500 0.00 0.00 0.00 3.77
3538 5770 6.821160 TCAACTCATCAAAGCGTATATTCCAA 59.179 34.615 0.00 0.00 0.00 3.53
3539 5771 6.345298 TCAACTCATCAAAGCGTATATTCCA 58.655 36.000 0.00 0.00 0.00 3.53
3540 5772 6.844696 TCAACTCATCAAAGCGTATATTCC 57.155 37.500 0.00 0.00 0.00 3.01
3541 5773 8.076714 TGATCAACTCATCAAAGCGTATATTC 57.923 34.615 0.00 0.00 29.41 1.75
3542 5774 8.437360 TTGATCAACTCATCAAAGCGTATATT 57.563 30.769 3.38 0.00 39.37 1.28
3543 5775 8.437360 TTTGATCAACTCATCAAAGCGTATAT 57.563 30.769 7.89 0.00 44.34 0.86
3544 5776 7.841915 TTTGATCAACTCATCAAAGCGTATA 57.158 32.000 7.89 0.00 44.34 1.47
3545 5777 6.741992 TTTGATCAACTCATCAAAGCGTAT 57.258 33.333 7.89 0.00 44.34 3.06
3551 5783 7.123098 ACCATATGCTTTGATCAACTCATCAAA 59.877 33.333 19.25 8.05 46.11 2.69
3552 5784 6.604396 ACCATATGCTTTGATCAACTCATCAA 59.396 34.615 19.25 8.59 40.36 2.57
3553 5785 6.124340 ACCATATGCTTTGATCAACTCATCA 58.876 36.000 19.25 9.63 32.72 3.07
3554 5786 6.630444 ACCATATGCTTTGATCAACTCATC 57.370 37.500 19.25 5.24 32.72 2.92
3555 5787 7.414222 AAACCATATGCTTTGATCAACTCAT 57.586 32.000 19.48 19.48 32.72 2.90
3556 5788 6.839124 AAACCATATGCTTTGATCAACTCA 57.161 33.333 7.89 9.33 0.00 3.41
3561 5793 9.625747 TCTGTATAAAACCATATGCTTTGATCA 57.374 29.630 0.00 0.00 0.00 2.92
3562 5794 9.884465 GTCTGTATAAAACCATATGCTTTGATC 57.116 33.333 0.00 0.00 0.00 2.92
3563 5795 9.632638 AGTCTGTATAAAACCATATGCTTTGAT 57.367 29.630 0.00 0.00 0.00 2.57
3564 5796 9.461312 AAGTCTGTATAAAACCATATGCTTTGA 57.539 29.630 0.00 0.00 0.00 2.69
3568 5800 8.686334 CCAAAAGTCTGTATAAAACCATATGCT 58.314 33.333 0.00 0.00 0.00 3.79
3569 5801 8.682710 TCCAAAAGTCTGTATAAAACCATATGC 58.317 33.333 0.00 0.00 0.00 3.14
3573 5805 8.585018 CCTTTCCAAAAGTCTGTATAAAACCAT 58.415 33.333 0.00 0.00 0.00 3.55
3574 5806 7.470841 GCCTTTCCAAAAGTCTGTATAAAACCA 60.471 37.037 0.00 0.00 0.00 3.67
3575 5807 6.866770 GCCTTTCCAAAAGTCTGTATAAAACC 59.133 38.462 0.00 0.00 0.00 3.27
3576 5808 6.866770 GGCCTTTCCAAAAGTCTGTATAAAAC 59.133 38.462 0.00 0.00 34.01 2.43
3577 5809 6.780522 AGGCCTTTCCAAAAGTCTGTATAAAA 59.219 34.615 0.00 0.00 37.29 1.52
3578 5810 6.208599 CAGGCCTTTCCAAAAGTCTGTATAAA 59.791 38.462 0.00 0.00 37.29 1.40
3579 5811 5.710099 CAGGCCTTTCCAAAAGTCTGTATAA 59.290 40.000 0.00 0.00 37.29 0.98
3580 5812 5.222048 ACAGGCCTTTCCAAAAGTCTGTATA 60.222 40.000 0.00 0.00 37.29 1.47
3581 5813 4.082125 CAGGCCTTTCCAAAAGTCTGTAT 58.918 43.478 0.00 0.00 37.29 2.29
3582 5814 3.117663 ACAGGCCTTTCCAAAAGTCTGTA 60.118 43.478 0.00 0.00 37.29 2.74
3583 5815 2.310538 CAGGCCTTTCCAAAAGTCTGT 58.689 47.619 0.00 0.00 37.29 3.41
3584 5816 2.310538 ACAGGCCTTTCCAAAAGTCTG 58.689 47.619 0.00 13.60 37.29 3.51
3585 5817 2.755952 ACAGGCCTTTCCAAAAGTCT 57.244 45.000 0.00 0.00 37.29 3.24
3586 5818 5.468540 AAATACAGGCCTTTCCAAAAGTC 57.531 39.130 0.00 0.00 37.29 3.01
3587 5819 5.836358 TGTAAATACAGGCCTTTCCAAAAGT 59.164 36.000 0.00 0.00 37.29 2.66
3588 5820 6.339587 TGTAAATACAGGCCTTTCCAAAAG 57.660 37.500 0.00 0.00 37.29 2.27
3589 5821 6.551601 TCTTGTAAATACAGGCCTTTCCAAAA 59.448 34.615 0.00 0.00 37.52 2.44
3590 5822 6.071984 TCTTGTAAATACAGGCCTTTCCAAA 58.928 36.000 0.00 0.00 37.52 3.28
3591 5823 5.636123 TCTTGTAAATACAGGCCTTTCCAA 58.364 37.500 0.00 0.00 37.52 3.53
3592 5824 5.249780 TCTTGTAAATACAGGCCTTTCCA 57.750 39.130 0.00 0.00 37.52 3.53
3593 5825 6.208797 ACTTTCTTGTAAATACAGGCCTTTCC 59.791 38.462 0.00 0.00 37.52 3.13
3594 5826 7.040686 TCACTTTCTTGTAAATACAGGCCTTTC 60.041 37.037 0.00 0.00 37.52 2.62
3595 5827 6.775629 TCACTTTCTTGTAAATACAGGCCTTT 59.224 34.615 0.00 0.00 37.52 3.11
3596 5828 6.303839 TCACTTTCTTGTAAATACAGGCCTT 58.696 36.000 0.00 0.00 37.52 4.35
3597 5829 5.876357 TCACTTTCTTGTAAATACAGGCCT 58.124 37.500 0.00 0.00 37.52 5.19
3598 5830 5.705905 ACTCACTTTCTTGTAAATACAGGCC 59.294 40.000 0.00 0.00 37.52 5.19
3599 5831 6.348540 CCACTCACTTTCTTGTAAATACAGGC 60.349 42.308 0.00 0.00 37.52 4.85
3600 5832 6.149474 CCCACTCACTTTCTTGTAAATACAGG 59.851 42.308 0.00 0.00 37.52 4.00
3601 5833 6.934645 TCCCACTCACTTTCTTGTAAATACAG 59.065 38.462 0.00 0.00 37.52 2.74
3602 5834 6.833041 TCCCACTCACTTTCTTGTAAATACA 58.167 36.000 0.00 0.00 0.00 2.29
3603 5835 6.128254 GCTCCCACTCACTTTCTTGTAAATAC 60.128 42.308 0.00 0.00 0.00 1.89
3604 5836 5.938125 GCTCCCACTCACTTTCTTGTAAATA 59.062 40.000 0.00 0.00 0.00 1.40
3605 5837 4.762251 GCTCCCACTCACTTTCTTGTAAAT 59.238 41.667 0.00 0.00 0.00 1.40
3606 5838 4.134563 GCTCCCACTCACTTTCTTGTAAA 58.865 43.478 0.00 0.00 0.00 2.01
3607 5839 3.391296 AGCTCCCACTCACTTTCTTGTAA 59.609 43.478 0.00 0.00 0.00 2.41
3608 5840 2.972713 AGCTCCCACTCACTTTCTTGTA 59.027 45.455 0.00 0.00 0.00 2.41
3609 5841 1.771255 AGCTCCCACTCACTTTCTTGT 59.229 47.619 0.00 0.00 0.00 3.16
3610 5842 2.038295 AGAGCTCCCACTCACTTTCTTG 59.962 50.000 10.93 0.00 39.26 3.02
3611 5843 2.038295 CAGAGCTCCCACTCACTTTCTT 59.962 50.000 10.93 0.00 39.26 2.52
3612 5844 1.622811 CAGAGCTCCCACTCACTTTCT 59.377 52.381 10.93 0.00 39.26 2.52
3613 5845 1.346068 ACAGAGCTCCCACTCACTTTC 59.654 52.381 10.93 0.00 39.26 2.62
3614 5846 1.428869 ACAGAGCTCCCACTCACTTT 58.571 50.000 10.93 0.00 39.26 2.66
3615 5847 2.175202 CTACAGAGCTCCCACTCACTT 58.825 52.381 10.93 0.00 39.26 3.16
3616 5848 1.846007 CTACAGAGCTCCCACTCACT 58.154 55.000 10.93 0.00 39.26 3.41
3617 5849 0.174617 GCTACAGAGCTCCCACTCAC 59.825 60.000 10.93 0.00 45.98 3.51
3618 5850 2.584673 GCTACAGAGCTCCCACTCA 58.415 57.895 10.93 0.00 45.98 3.41
3631 5863 9.723601 TGCACATATAATATCAGAAATGCTACA 57.276 29.630 0.00 0.00 0.00 2.74
3634 5866 9.511272 TCTTGCACATATAATATCAGAAATGCT 57.489 29.630 0.00 0.00 0.00 3.79
3635 5867 9.552114 GTCTTGCACATATAATATCAGAAATGC 57.448 33.333 0.00 0.00 0.00 3.56
3652 5884 5.476254 TCCAATCAACAATATGTCTTGCACA 59.524 36.000 0.00 0.00 40.18 4.57
3653 5885 5.953183 TCCAATCAACAATATGTCTTGCAC 58.047 37.500 0.00 0.00 0.00 4.57
3654 5886 6.587206 TTCCAATCAACAATATGTCTTGCA 57.413 33.333 0.00 0.00 0.00 4.08
3655 5887 7.760794 TCATTTCCAATCAACAATATGTCTTGC 59.239 33.333 0.00 0.00 0.00 4.01
3656 5888 9.811995 ATCATTTCCAATCAACAATATGTCTTG 57.188 29.630 0.00 0.00 0.00 3.02
3689 5921 9.342308 CAAGTATCCTTTTATGCTATCCAGAAA 57.658 33.333 0.00 0.00 33.15 2.52
3690 5922 8.713971 TCAAGTATCCTTTTATGCTATCCAGAA 58.286 33.333 0.00 0.00 0.00 3.02
3691 5923 8.262601 TCAAGTATCCTTTTATGCTATCCAGA 57.737 34.615 0.00 0.00 0.00 3.86
3692 5924 8.908786 TTCAAGTATCCTTTTATGCTATCCAG 57.091 34.615 0.00 0.00 0.00 3.86
3718 5950 9.296400 CGAGGTCTTTCATTGAAAAACTTTTTA 57.704 29.630 13.70 0.00 30.84 1.52
3719 5951 7.277760 CCGAGGTCTTTCATTGAAAAACTTTTT 59.722 33.333 13.70 0.00 30.84 1.94
3720 5952 6.756542 CCGAGGTCTTTCATTGAAAAACTTTT 59.243 34.615 13.70 2.72 30.84 2.27
3721 5953 6.127451 ACCGAGGTCTTTCATTGAAAAACTTT 60.127 34.615 13.70 4.76 30.84 2.66
3722 5954 5.359860 ACCGAGGTCTTTCATTGAAAAACTT 59.640 36.000 13.70 7.58 30.84 2.66
3723 5955 4.887655 ACCGAGGTCTTTCATTGAAAAACT 59.112 37.500 13.70 11.67 30.84 2.66
3724 5956 4.976116 CACCGAGGTCTTTCATTGAAAAAC 59.024 41.667 12.62 9.78 30.84 2.43
3725 5957 4.884744 TCACCGAGGTCTTTCATTGAAAAA 59.115 37.500 12.62 0.00 30.84 1.94
3726 5958 4.456535 TCACCGAGGTCTTTCATTGAAAA 58.543 39.130 12.62 2.45 30.84 2.29
3727 5959 4.079980 TCACCGAGGTCTTTCATTGAAA 57.920 40.909 11.19 11.19 0.00 2.69
3728 5960 3.762407 TCACCGAGGTCTTTCATTGAA 57.238 42.857 0.00 0.00 0.00 2.69
3729 5961 3.664107 CTTCACCGAGGTCTTTCATTGA 58.336 45.455 0.00 0.00 0.00 2.57
3730 5962 2.160417 GCTTCACCGAGGTCTTTCATTG 59.840 50.000 0.00 0.00 0.00 2.82
3731 5963 2.039084 AGCTTCACCGAGGTCTTTCATT 59.961 45.455 0.00 0.00 0.00 2.57
3732 5964 1.625818 AGCTTCACCGAGGTCTTTCAT 59.374 47.619 0.00 0.00 0.00 2.57
3733 5965 1.048601 AGCTTCACCGAGGTCTTTCA 58.951 50.000 0.00 0.00 0.00 2.69
3734 5966 1.433534 CAGCTTCACCGAGGTCTTTC 58.566 55.000 0.00 0.00 0.00 2.62
3735 5967 0.603975 GCAGCTTCACCGAGGTCTTT 60.604 55.000 0.00 0.00 0.00 2.52
3736 5968 1.004440 GCAGCTTCACCGAGGTCTT 60.004 57.895 0.00 0.00 0.00 3.01
3737 5969 1.476007 AAGCAGCTTCACCGAGGTCT 61.476 55.000 0.21 0.00 0.00 3.85
3738 5970 0.246635 TAAGCAGCTTCACCGAGGTC 59.753 55.000 12.07 0.00 0.00 3.85
3739 5971 0.037232 GTAAGCAGCTTCACCGAGGT 60.037 55.000 12.07 0.00 0.00 3.85
3740 5972 0.037326 TGTAAGCAGCTTCACCGAGG 60.037 55.000 12.07 0.00 0.00 4.63
3741 5973 2.015736 ATGTAAGCAGCTTCACCGAG 57.984 50.000 12.07 0.00 0.00 4.63
3742 5974 3.819564 ATATGTAAGCAGCTTCACCGA 57.180 42.857 12.07 0.00 0.00 4.69
3743 5975 3.871006 TCAATATGTAAGCAGCTTCACCG 59.129 43.478 12.07 0.00 0.00 4.94
3744 5976 4.260948 GCTCAATATGTAAGCAGCTTCACC 60.261 45.833 12.07 1.56 36.06 4.02
3745 5977 4.333649 TGCTCAATATGTAAGCAGCTTCAC 59.666 41.667 12.07 9.11 40.91 3.18
3746 5978 4.516323 TGCTCAATATGTAAGCAGCTTCA 58.484 39.130 12.07 10.15 40.91 3.02
3753 5985 7.670009 AGATCTTGATGCTCAATATGTAAGC 57.330 36.000 0.00 0.00 35.59 3.09
3757 5989 9.438228 CTCAATAGATCTTGATGCTCAATATGT 57.562 33.333 0.00 1.08 35.59 2.29
3758 5990 9.654663 TCTCAATAGATCTTGATGCTCAATATG 57.345 33.333 0.00 0.00 35.59 1.78
3761 5993 9.878667 CTATCTCAATAGATCTTGATGCTCAAT 57.121 33.333 0.00 0.00 41.71 2.57
3762 5994 9.086758 TCTATCTCAATAGATCTTGATGCTCAA 57.913 33.333 0.00 0.00 41.71 3.02
3763 5995 8.647256 TCTATCTCAATAGATCTTGATGCTCA 57.353 34.615 0.00 0.00 41.71 4.26
3775 6007 7.229506 TCAAGCGTCTTGATCTATCTCAATAGA 59.770 37.037 15.33 0.00 46.09 1.98
3776 6008 7.366513 TCAAGCGTCTTGATCTATCTCAATAG 58.633 38.462 15.33 0.00 34.76 1.73
3777 6009 7.277174 TCAAGCGTCTTGATCTATCTCAATA 57.723 36.000 15.33 0.00 34.76 1.90
3778 6010 6.154203 TCAAGCGTCTTGATCTATCTCAAT 57.846 37.500 15.33 0.00 34.76 2.57
3779 6011 5.582689 TCAAGCGTCTTGATCTATCTCAA 57.417 39.130 15.33 0.00 34.14 3.02
3780 6012 5.781210 ATCAAGCGTCTTGATCTATCTCA 57.219 39.130 21.65 3.11 34.28 3.27
3781 6013 7.367285 ACTTATCAAGCGTCTTGATCTATCTC 58.633 38.462 27.10 0.00 39.59 2.75
3782 6014 7.283625 ACTTATCAAGCGTCTTGATCTATCT 57.716 36.000 27.10 13.70 39.59 1.98
3783 6015 7.938563 AACTTATCAAGCGTCTTGATCTATC 57.061 36.000 27.10 0.00 39.59 2.08
3784 6016 8.723942 AAAACTTATCAAGCGTCTTGATCTAT 57.276 30.769 27.10 16.31 39.59 1.98
3785 6017 8.547967 AAAAACTTATCAAGCGTCTTGATCTA 57.452 30.769 27.10 19.06 39.59 1.98
3786 6018 7.173218 TGAAAAACTTATCAAGCGTCTTGATCT 59.827 33.333 27.10 15.26 39.59 2.75
3787 6019 7.298122 TGAAAAACTTATCAAGCGTCTTGATC 58.702 34.615 27.10 17.02 39.59 2.92
3788 6020 7.202016 TGAAAAACTTATCAAGCGTCTTGAT 57.798 32.000 26.73 26.73 41.54 2.57
3789 6021 6.612247 TGAAAAACTTATCAAGCGTCTTGA 57.388 33.333 19.64 19.64 0.00 3.02
3790 6022 7.858052 ATTGAAAAACTTATCAAGCGTCTTG 57.142 32.000 11.78 11.78 38.80 3.02
3791 6023 9.612620 CTTATTGAAAAACTTATCAAGCGTCTT 57.387 29.630 0.00 0.00 38.80 3.01
3792 6024 8.784043 ACTTATTGAAAAACTTATCAAGCGTCT 58.216 29.630 0.00 0.00 38.80 4.18
3793 6025 8.950403 ACTTATTGAAAAACTTATCAAGCGTC 57.050 30.769 0.00 0.00 38.80 5.19
3794 6026 9.821662 GTACTTATTGAAAAACTTATCAAGCGT 57.178 29.630 0.00 0.00 38.80 5.07
3795 6027 9.820229 TGTACTTATTGAAAAACTTATCAAGCG 57.180 29.630 0.00 0.00 38.80 4.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.