Multiple sequence alignment - TraesCS3B01G562800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G562800 chr3B 100.000 3416 0 0 1 3416 795912771 795916186 0.000000e+00 6309.0
1 TraesCS3B01G562800 chr3B 95.117 983 43 3 966 1947 795920171 795919193 0.000000e+00 1544.0
2 TraesCS3B01G562800 chr3B 85.233 1158 128 14 1274 2419 795280865 795281991 0.000000e+00 1151.0
3 TraesCS3B01G562800 chr3B 91.877 357 24 2 182 535 52620867 52621221 8.520000e-136 494.0
4 TraesCS3B01G562800 chr3B 94.944 178 9 0 1 178 703294880 703294703 2.600000e-71 279.0
5 TraesCS3B01G562800 chr3B 86.420 243 23 6 1023 1256 795280647 795280888 1.220000e-64 257.0
6 TraesCS3B01G562800 chr3D 94.046 2066 100 9 539 2597 593243979 593246028 0.000000e+00 3112.0
7 TraesCS3B01G562800 chr3D 86.745 1456 143 18 992 2419 593078319 593079752 0.000000e+00 1574.0
8 TraesCS3B01G562800 chr3D 93.818 922 51 4 1028 1947 593261462 593260545 0.000000e+00 1382.0
9 TraesCS3B01G562800 chr3D 91.667 600 39 9 2644 3237 593246211 593246805 0.000000e+00 821.0
10 TraesCS3B01G562800 chr3D 90.323 186 12 3 3233 3416 593258053 593258234 4.410000e-59 239.0
11 TraesCS3B01G562800 chr3D 79.093 397 38 24 640 1024 593265219 593264856 7.370000e-57 231.0
12 TraesCS3B01G562800 chr3A 92.501 1907 92 16 714 2597 724519086 724520964 0.000000e+00 2682.0
13 TraesCS3B01G562800 chr3A 89.624 1224 83 18 744 1947 724525574 724524375 0.000000e+00 1517.0
14 TraesCS3B01G562800 chr3A 86.896 1366 146 11 1064 2419 724305441 724306783 0.000000e+00 1500.0
15 TraesCS3B01G562800 chr3A 92.555 779 50 5 2644 3416 724521156 724521932 0.000000e+00 1110.0
16 TraesCS3B01G562800 chr5B 92.676 355 19 2 182 536 270434428 270434775 3.930000e-139 505.0
17 TraesCS3B01G562800 chr5B 90.331 362 32 1 182 540 659751280 659751641 3.990000e-129 472.0
18 TraesCS3B01G562800 chr5B 95.506 178 8 0 1 178 417803507 417803330 5.580000e-73 285.0
19 TraesCS3B01G562800 chr5B 94.915 177 9 0 2 178 637117865 637118041 9.340000e-71 278.0
20 TraesCS3B01G562800 chr4A 91.713 362 22 7 182 536 659232427 659232067 2.370000e-136 496.0
21 TraesCS3B01G562800 chr4A 82.759 87 9 5 3316 3398 705892003 705892087 4.730000e-09 73.1
22 TraesCS3B01G562800 chr4B 91.389 360 25 3 182 535 568636352 568636711 3.960000e-134 488.0
23 TraesCS3B01G562800 chr7B 90.833 360 30 2 182 539 742275742 742275384 2.380000e-131 479.0
24 TraesCS3B01G562800 chr7B 94.382 178 10 0 1 178 400640826 400641003 1.210000e-69 274.0
25 TraesCS3B01G562800 chr6B 90.608 362 32 1 182 541 701896143 701895782 2.380000e-131 479.0
26 TraesCS3B01G562800 chr6B 94.944 178 9 0 1 178 619730743 619730920 2.600000e-71 279.0
27 TraesCS3B01G562800 chr2B 90.884 362 25 4 182 536 788663116 788663476 2.380000e-131 479.0
28 TraesCS3B01G562800 chr2B 94.944 178 9 0 1 178 461253974 461253797 2.600000e-71 279.0
29 TraesCS3B01G562800 chr1B 90.423 355 34 0 182 536 540153430 540153784 5.160000e-128 468.0
30 TraesCS3B01G562800 chrUn 94.382 178 10 0 1 178 413954550 413954373 1.210000e-69 274.0
31 TraesCS3B01G562800 chr5D 94.382 178 10 0 1 178 423274582 423274405 1.210000e-69 274.0
32 TraesCS3B01G562800 chr1D 94.382 178 10 0 1 178 470208560 470208383 1.210000e-69 274.0
33 TraesCS3B01G562800 chr2D 82.927 82 12 2 3317 3396 601609536 601609617 4.730000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G562800 chr3B 795912771 795916186 3415 False 6309.0 6309 100.0000 1 3416 1 chr3B.!!$F2 3415
1 TraesCS3B01G562800 chr3B 795919193 795920171 978 True 1544.0 1544 95.1170 966 1947 1 chr3B.!!$R2 981
2 TraesCS3B01G562800 chr3B 795280647 795281991 1344 False 704.0 1151 85.8265 1023 2419 2 chr3B.!!$F3 1396
3 TraesCS3B01G562800 chr3D 593243979 593246805 2826 False 1966.5 3112 92.8565 539 3237 2 chr3D.!!$F3 2698
4 TraesCS3B01G562800 chr3D 593078319 593079752 1433 False 1574.0 1574 86.7450 992 2419 1 chr3D.!!$F1 1427
5 TraesCS3B01G562800 chr3D 593260545 593265219 4674 True 806.5 1382 86.4555 640 1947 2 chr3D.!!$R1 1307
6 TraesCS3B01G562800 chr3A 724519086 724521932 2846 False 1896.0 2682 92.5280 714 3416 2 chr3A.!!$F2 2702
7 TraesCS3B01G562800 chr3A 724524375 724525574 1199 True 1517.0 1517 89.6240 744 1947 1 chr3A.!!$R1 1203
8 TraesCS3B01G562800 chr3A 724305441 724306783 1342 False 1500.0 1500 86.8960 1064 2419 1 chr3A.!!$F1 1355

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
512 513 0.033781 TTTACGGTGCGGTGCTAGTT 59.966 50.0 0.00 0.00 0.00 2.24 F
526 527 0.370273 CTAGTTTAGCGCGGCTGTTG 59.630 55.0 8.83 0.00 40.10 3.33 F
1024 4486 0.527600 GATGCACCGTGCTACGATCA 60.528 55.0 23.52 2.47 46.05 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2170 5682 1.069668 GGTGTGGTCGTTGAAGTAGGT 59.930 52.381 0.0 0.0 0.0 3.08 R
2214 5726 3.753434 CACGCCTCCTCGCTCACT 61.753 66.667 0.0 0.0 0.0 3.41 R
2660 6318 1.291109 TGTATGGGGTGTGGTTAGGG 58.709 55.000 0.0 0.0 0.0 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.554036 GGCGGCCACCATCCTCTC 62.554 72.222 15.62 0.00 0.00 3.20
19 20 4.554036 GCGGCCACCATCCTCTCC 62.554 72.222 2.24 0.00 0.00 3.71
20 21 2.765807 CGGCCACCATCCTCTCCT 60.766 66.667 2.24 0.00 0.00 3.69
21 22 2.801631 CGGCCACCATCCTCTCCTC 61.802 68.421 2.24 0.00 0.00 3.71
22 23 2.801631 GGCCACCATCCTCTCCTCG 61.802 68.421 0.00 0.00 0.00 4.63
23 24 2.801631 GCCACCATCCTCTCCTCGG 61.802 68.421 0.00 0.00 0.00 4.63
24 25 2.801631 CCACCATCCTCTCCTCGGC 61.802 68.421 0.00 0.00 0.00 5.54
25 26 2.835431 ACCATCCTCTCCTCGGCG 60.835 66.667 0.00 0.00 0.00 6.46
26 27 3.610669 CCATCCTCTCCTCGGCGG 61.611 72.222 7.21 0.00 0.00 6.13
27 28 4.292178 CATCCTCTCCTCGGCGGC 62.292 72.222 7.21 0.00 0.00 6.53
39 40 4.554036 GGCGGCCACCATCCTCTC 62.554 72.222 15.62 0.00 0.00 3.20
40 41 4.554036 GCGGCCACCATCCTCTCC 62.554 72.222 2.24 0.00 0.00 3.71
41 42 2.765807 CGGCCACCATCCTCTCCT 60.766 66.667 2.24 0.00 0.00 3.69
42 43 2.801631 CGGCCACCATCCTCTCCTC 61.802 68.421 2.24 0.00 0.00 3.71
43 44 2.801631 GGCCACCATCCTCTCCTCG 61.802 68.421 0.00 0.00 0.00 4.63
44 45 2.801631 GCCACCATCCTCTCCTCGG 61.802 68.421 0.00 0.00 0.00 4.63
45 46 2.801631 CCACCATCCTCTCCTCGGC 61.802 68.421 0.00 0.00 0.00 5.54
46 47 2.444895 ACCATCCTCTCCTCGGCC 60.445 66.667 0.00 0.00 0.00 6.13
47 48 3.610669 CCATCCTCTCCTCGGCCG 61.611 72.222 22.12 22.12 0.00 6.13
48 49 4.292178 CATCCTCTCCTCGGCCGC 62.292 72.222 23.51 0.00 0.00 6.53
49 50 4.841617 ATCCTCTCCTCGGCCGCA 62.842 66.667 23.51 8.85 0.00 5.69
56 57 4.845580 CCTCGGCCGCAGCATCTT 62.846 66.667 23.51 0.00 42.56 2.40
57 58 3.570638 CTCGGCCGCAGCATCTTG 61.571 66.667 23.51 0.00 42.56 3.02
60 61 3.064324 GGCCGCAGCATCTTGGTT 61.064 61.111 0.00 0.00 42.56 3.67
61 62 2.486966 GCCGCAGCATCTTGGTTC 59.513 61.111 0.00 0.00 39.53 3.62
62 63 2.042831 GCCGCAGCATCTTGGTTCT 61.043 57.895 0.00 0.00 39.53 3.01
63 64 1.589716 GCCGCAGCATCTTGGTTCTT 61.590 55.000 0.00 0.00 39.53 2.52
64 65 0.883833 CCGCAGCATCTTGGTTCTTT 59.116 50.000 0.00 0.00 0.00 2.52
65 66 1.401931 CCGCAGCATCTTGGTTCTTTG 60.402 52.381 0.00 0.00 0.00 2.77
66 67 1.706443 GCAGCATCTTGGTTCTTTGC 58.294 50.000 0.00 0.00 0.00 3.68
67 68 1.670967 GCAGCATCTTGGTTCTTTGCC 60.671 52.381 0.00 0.00 33.85 4.52
68 69 1.614903 CAGCATCTTGGTTCTTTGCCA 59.385 47.619 0.00 0.00 33.85 4.92
69 70 2.232941 CAGCATCTTGGTTCTTTGCCAT 59.767 45.455 0.00 0.00 35.71 4.40
70 71 2.901839 AGCATCTTGGTTCTTTGCCATT 59.098 40.909 0.00 0.00 35.71 3.16
71 72 3.325716 AGCATCTTGGTTCTTTGCCATTT 59.674 39.130 0.00 0.00 35.71 2.32
72 73 4.067192 GCATCTTGGTTCTTTGCCATTTT 58.933 39.130 0.00 0.00 35.71 1.82
73 74 4.152938 GCATCTTGGTTCTTTGCCATTTTC 59.847 41.667 0.00 0.00 35.71 2.29
74 75 4.335400 TCTTGGTTCTTTGCCATTTTCC 57.665 40.909 0.00 0.00 35.71 3.13
75 76 3.966665 TCTTGGTTCTTTGCCATTTTCCT 59.033 39.130 0.00 0.00 35.71 3.36
76 77 4.039124 TCTTGGTTCTTTGCCATTTTCCTC 59.961 41.667 0.00 0.00 35.71 3.71
77 78 3.303938 TGGTTCTTTGCCATTTTCCTCA 58.696 40.909 0.00 0.00 0.00 3.86
78 79 3.069443 TGGTTCTTTGCCATTTTCCTCAC 59.931 43.478 0.00 0.00 0.00 3.51
79 80 3.554960 GGTTCTTTGCCATTTTCCTCACC 60.555 47.826 0.00 0.00 0.00 4.02
80 81 3.243359 TCTTTGCCATTTTCCTCACCT 57.757 42.857 0.00 0.00 0.00 4.00
81 82 3.157087 TCTTTGCCATTTTCCTCACCTC 58.843 45.455 0.00 0.00 0.00 3.85
82 83 1.533625 TTGCCATTTTCCTCACCTCG 58.466 50.000 0.00 0.00 0.00 4.63
83 84 0.400213 TGCCATTTTCCTCACCTCGT 59.600 50.000 0.00 0.00 0.00 4.18
84 85 1.202879 TGCCATTTTCCTCACCTCGTT 60.203 47.619 0.00 0.00 0.00 3.85
85 86 1.200020 GCCATTTTCCTCACCTCGTTG 59.800 52.381 0.00 0.00 0.00 4.10
86 87 1.812571 CCATTTTCCTCACCTCGTTGG 59.187 52.381 0.00 0.00 42.93 3.77
87 88 1.200020 CATTTTCCTCACCTCGTTGGC 59.800 52.381 0.00 0.00 40.22 4.52
88 89 0.472471 TTTTCCTCACCTCGTTGGCT 59.528 50.000 0.00 0.00 40.22 4.75
89 90 0.472471 TTTCCTCACCTCGTTGGCTT 59.528 50.000 0.00 0.00 40.22 4.35
90 91 0.034896 TTCCTCACCTCGTTGGCTTC 59.965 55.000 0.00 0.00 40.22 3.86
91 92 0.832135 TCCTCACCTCGTTGGCTTCT 60.832 55.000 0.00 0.00 40.22 2.85
92 93 0.035458 CCTCACCTCGTTGGCTTCTT 59.965 55.000 0.00 0.00 40.22 2.52
93 94 1.543429 CCTCACCTCGTTGGCTTCTTT 60.543 52.381 0.00 0.00 40.22 2.52
94 95 2.222027 CTCACCTCGTTGGCTTCTTTT 58.778 47.619 0.00 0.00 40.22 2.27
95 96 2.218603 TCACCTCGTTGGCTTCTTTTC 58.781 47.619 0.00 0.00 40.22 2.29
96 97 2.158813 TCACCTCGTTGGCTTCTTTTCT 60.159 45.455 0.00 0.00 40.22 2.52
97 98 2.031682 CACCTCGTTGGCTTCTTTTCTG 60.032 50.000 0.00 0.00 40.22 3.02
98 99 1.537202 CCTCGTTGGCTTCTTTTCTGG 59.463 52.381 0.00 0.00 0.00 3.86
99 100 0.951558 TCGTTGGCTTCTTTTCTGGC 59.048 50.000 0.00 0.00 0.00 4.85
100 101 0.039165 CGTTGGCTTCTTTTCTGGCC 60.039 55.000 0.00 0.00 44.31 5.36
101 102 1.332195 GTTGGCTTCTTTTCTGGCCT 58.668 50.000 3.32 0.00 44.36 5.19
102 103 1.688735 GTTGGCTTCTTTTCTGGCCTT 59.311 47.619 3.32 0.00 44.36 4.35
103 104 1.620822 TGGCTTCTTTTCTGGCCTTC 58.379 50.000 3.32 0.00 44.36 3.46
104 105 1.133513 TGGCTTCTTTTCTGGCCTTCA 60.134 47.619 3.32 0.00 44.36 3.02
105 106 1.270826 GGCTTCTTTTCTGGCCTTCAC 59.729 52.381 3.32 0.00 41.20 3.18
106 107 1.956477 GCTTCTTTTCTGGCCTTCACA 59.044 47.619 3.32 0.00 0.00 3.58
107 108 2.362077 GCTTCTTTTCTGGCCTTCACAA 59.638 45.455 3.32 0.00 0.00 3.33
108 109 3.006217 GCTTCTTTTCTGGCCTTCACAAT 59.994 43.478 3.32 0.00 0.00 2.71
109 110 4.218417 GCTTCTTTTCTGGCCTTCACAATA 59.782 41.667 3.32 0.00 0.00 1.90
110 111 5.620879 GCTTCTTTTCTGGCCTTCACAATAG 60.621 44.000 3.32 0.00 0.00 1.73
111 112 3.758554 TCTTTTCTGGCCTTCACAATAGC 59.241 43.478 3.32 0.00 0.00 2.97
112 113 3.439857 TTTCTGGCCTTCACAATAGCT 57.560 42.857 3.32 0.00 0.00 3.32
113 114 3.439857 TTCTGGCCTTCACAATAGCTT 57.560 42.857 3.32 0.00 0.00 3.74
114 115 2.991250 TCTGGCCTTCACAATAGCTTC 58.009 47.619 3.32 0.00 0.00 3.86
115 116 2.019984 CTGGCCTTCACAATAGCTTCC 58.980 52.381 3.32 0.00 0.00 3.46
116 117 1.354031 TGGCCTTCACAATAGCTTCCA 59.646 47.619 3.32 0.00 0.00 3.53
117 118 2.025037 TGGCCTTCACAATAGCTTCCAT 60.025 45.455 3.32 0.00 0.00 3.41
118 119 3.201930 TGGCCTTCACAATAGCTTCCATA 59.798 43.478 3.32 0.00 0.00 2.74
119 120 3.817647 GGCCTTCACAATAGCTTCCATAG 59.182 47.826 0.00 0.00 0.00 2.23
133 134 5.571784 CTTCCATAGCATTTTTGAGCTCA 57.428 39.130 13.74 13.74 42.05 4.26
134 135 6.145338 CTTCCATAGCATTTTTGAGCTCAT 57.855 37.500 19.04 2.75 42.05 2.90
135 136 5.762825 TCCATAGCATTTTTGAGCTCATC 57.237 39.130 19.04 3.12 42.05 2.92
136 137 5.195185 TCCATAGCATTTTTGAGCTCATCA 58.805 37.500 19.04 4.44 42.05 3.07
137 138 5.831525 TCCATAGCATTTTTGAGCTCATCAT 59.168 36.000 19.04 7.11 42.05 2.45
138 139 6.016527 TCCATAGCATTTTTGAGCTCATCATC 60.017 38.462 19.04 5.26 42.05 2.92
139 140 6.016192 CCATAGCATTTTTGAGCTCATCATCT 60.016 38.462 19.04 12.17 42.05 2.90
140 141 5.502153 AGCATTTTTGAGCTCATCATCTC 57.498 39.130 19.04 6.33 37.89 2.75
141 142 4.338682 AGCATTTTTGAGCTCATCATCTCC 59.661 41.667 19.04 4.04 37.89 3.71
142 143 4.338682 GCATTTTTGAGCTCATCATCTCCT 59.661 41.667 19.04 0.00 37.89 3.69
143 144 5.163540 GCATTTTTGAGCTCATCATCTCCTT 60.164 40.000 19.04 0.00 37.89 3.36
144 145 6.627508 GCATTTTTGAGCTCATCATCTCCTTT 60.628 38.462 19.04 0.00 37.89 3.11
145 146 6.506500 TTTTTGAGCTCATCATCTCCTTTC 57.493 37.500 19.04 0.00 37.89 2.62
146 147 3.834489 TGAGCTCATCATCTCCTTTCC 57.166 47.619 13.74 0.00 31.12 3.13
147 148 3.382278 TGAGCTCATCATCTCCTTTCCT 58.618 45.455 13.74 0.00 31.12 3.36
148 149 3.387374 TGAGCTCATCATCTCCTTTCCTC 59.613 47.826 13.74 0.00 31.12 3.71
149 150 3.642848 GAGCTCATCATCTCCTTTCCTCT 59.357 47.826 9.40 0.00 0.00 3.69
150 151 4.039339 AGCTCATCATCTCCTTTCCTCTT 58.961 43.478 0.00 0.00 0.00 2.85
151 152 4.101430 AGCTCATCATCTCCTTTCCTCTTC 59.899 45.833 0.00 0.00 0.00 2.87
152 153 4.101430 GCTCATCATCTCCTTTCCTCTTCT 59.899 45.833 0.00 0.00 0.00 2.85
153 154 5.396660 GCTCATCATCTCCTTTCCTCTTCTT 60.397 44.000 0.00 0.00 0.00 2.52
154 155 6.232581 TCATCATCTCCTTTCCTCTTCTTC 57.767 41.667 0.00 0.00 0.00 2.87
155 156 5.963253 TCATCATCTCCTTTCCTCTTCTTCT 59.037 40.000 0.00 0.00 0.00 2.85
156 157 6.443206 TCATCATCTCCTTTCCTCTTCTTCTT 59.557 38.462 0.00 0.00 0.00 2.52
157 158 6.694445 TCATCTCCTTTCCTCTTCTTCTTT 57.306 37.500 0.00 0.00 0.00 2.52
158 159 7.084268 TCATCTCCTTTCCTCTTCTTCTTTT 57.916 36.000 0.00 0.00 0.00 2.27
159 160 7.164803 TCATCTCCTTTCCTCTTCTTCTTTTC 58.835 38.462 0.00 0.00 0.00 2.29
160 161 5.542779 TCTCCTTTCCTCTTCTTCTTTTCG 58.457 41.667 0.00 0.00 0.00 3.46
161 162 5.304614 TCTCCTTTCCTCTTCTTCTTTTCGA 59.695 40.000 0.00 0.00 0.00 3.71
162 163 6.014156 TCTCCTTTCCTCTTCTTCTTTTCGAT 60.014 38.462 0.00 0.00 0.00 3.59
163 164 6.534634 TCCTTTCCTCTTCTTCTTTTCGATT 58.465 36.000 0.00 0.00 0.00 3.34
164 165 6.998673 TCCTTTCCTCTTCTTCTTTTCGATTT 59.001 34.615 0.00 0.00 0.00 2.17
165 166 7.502561 TCCTTTCCTCTTCTTCTTTTCGATTTT 59.497 33.333 0.00 0.00 0.00 1.82
166 167 8.138074 CCTTTCCTCTTCTTCTTTTCGATTTTT 58.862 33.333 0.00 0.00 0.00 1.94
184 185 3.715628 TTTTCTTTCTTGCAGTGGCTC 57.284 42.857 0.00 0.00 41.91 4.70
185 186 1.609208 TTCTTTCTTGCAGTGGCTCC 58.391 50.000 0.00 0.00 41.91 4.70
186 187 0.250901 TCTTTCTTGCAGTGGCTCCC 60.251 55.000 0.00 0.00 41.91 4.30
187 188 1.228552 TTTCTTGCAGTGGCTCCCC 60.229 57.895 0.00 0.00 41.91 4.81
188 189 3.551496 TTCTTGCAGTGGCTCCCCG 62.551 63.158 0.00 0.00 41.91 5.73
202 203 4.090588 CCCGCGCTAGGGTTTCCA 62.091 66.667 11.93 0.00 46.38 3.53
203 204 2.511600 CCGCGCTAGGGTTTCCAG 60.512 66.667 5.56 0.00 34.83 3.86
204 205 3.195698 CGCGCTAGGGTTTCCAGC 61.196 66.667 5.56 0.00 35.37 4.85
206 207 2.511600 CGCTAGGGTTTCCAGCGG 60.512 66.667 15.89 0.00 46.64 5.52
207 208 2.824489 GCTAGGGTTTCCAGCGGC 60.824 66.667 0.00 0.00 34.83 6.53
208 209 2.511600 CTAGGGTTTCCAGCGGCG 60.512 66.667 0.51 0.51 34.83 6.46
209 210 4.090588 TAGGGTTTCCAGCGGCGG 62.091 66.667 9.78 4.77 34.83 6.13
234 235 3.384532 GGGGAGGTCGCGGTTGTA 61.385 66.667 6.13 0.00 0.00 2.41
235 236 2.125793 GGGAGGTCGCGGTTGTAC 60.126 66.667 6.13 0.00 0.00 2.90
236 237 2.652530 GGAGGTCGCGGTTGTACA 59.347 61.111 6.13 0.00 0.00 2.90
237 238 1.445582 GGAGGTCGCGGTTGTACAG 60.446 63.158 6.13 0.00 0.00 2.74
238 239 2.048503 AGGTCGCGGTTGTACAGC 60.049 61.111 6.13 0.27 35.94 4.40
243 244 4.692475 GCGGTTGTACAGCGGGGT 62.692 66.667 16.89 0.00 46.92 4.95
244 245 2.740826 CGGTTGTACAGCGGGGTG 60.741 66.667 9.07 0.00 42.96 4.61
245 246 2.745037 GGTTGTACAGCGGGGTGA 59.255 61.111 4.69 0.00 0.00 4.02
246 247 1.375523 GGTTGTACAGCGGGGTGAG 60.376 63.158 4.69 0.00 0.00 3.51
247 248 2.033194 GTTGTACAGCGGGGTGAGC 61.033 63.158 4.69 0.00 0.00 4.26
248 249 3.583276 TTGTACAGCGGGGTGAGCG 62.583 63.158 4.69 0.00 40.04 5.03
249 250 4.814294 GTACAGCGGGGTGAGCGG 62.814 72.222 4.69 0.00 40.04 5.52
281 282 4.802051 CGTCCATGGGTGGCAGGG 62.802 72.222 13.02 0.00 45.63 4.45
317 318 4.517934 CGGGGCGTAGGAGGAGGA 62.518 72.222 0.00 0.00 0.00 3.71
318 319 2.522193 GGGGCGTAGGAGGAGGAG 60.522 72.222 0.00 0.00 0.00 3.69
319 320 2.601868 GGGCGTAGGAGGAGGAGA 59.398 66.667 0.00 0.00 0.00 3.71
320 321 1.529713 GGGCGTAGGAGGAGGAGAG 60.530 68.421 0.00 0.00 0.00 3.20
321 322 1.532728 GGCGTAGGAGGAGGAGAGA 59.467 63.158 0.00 0.00 0.00 3.10
322 323 0.106619 GGCGTAGGAGGAGGAGAGAA 60.107 60.000 0.00 0.00 0.00 2.87
323 324 1.314730 GCGTAGGAGGAGGAGAGAAG 58.685 60.000 0.00 0.00 0.00 2.85
324 325 1.134037 GCGTAGGAGGAGGAGAGAAGA 60.134 57.143 0.00 0.00 0.00 2.87
325 326 2.846193 CGTAGGAGGAGGAGAGAAGAG 58.154 57.143 0.00 0.00 0.00 2.85
326 327 2.436542 CGTAGGAGGAGGAGAGAAGAGA 59.563 54.545 0.00 0.00 0.00 3.10
327 328 3.494398 CGTAGGAGGAGGAGAGAAGAGAG 60.494 56.522 0.00 0.00 0.00 3.20
328 329 2.573463 AGGAGGAGGAGAGAAGAGAGT 58.427 52.381 0.00 0.00 0.00 3.24
329 330 2.242196 AGGAGGAGGAGAGAAGAGAGTG 59.758 54.545 0.00 0.00 0.00 3.51
330 331 2.024414 GAGGAGGAGAGAAGAGAGTGC 58.976 57.143 0.00 0.00 0.00 4.40
331 332 0.738389 GGAGGAGAGAAGAGAGTGCG 59.262 60.000 0.00 0.00 0.00 5.34
332 333 0.738389 GAGGAGAGAAGAGAGTGCGG 59.262 60.000 0.00 0.00 0.00 5.69
333 334 1.140804 GGAGAGAAGAGAGTGCGGC 59.859 63.158 0.00 0.00 0.00 6.53
334 335 1.226547 GAGAGAAGAGAGTGCGGCG 60.227 63.158 0.51 0.51 0.00 6.46
335 336 2.883253 GAGAAGAGAGTGCGGCGC 60.883 66.667 27.44 27.44 0.00 6.53
336 337 4.785512 AGAAGAGAGTGCGGCGCG 62.786 66.667 28.09 0.00 0.00 6.86
337 338 4.778415 GAAGAGAGTGCGGCGCGA 62.778 66.667 28.09 13.73 0.00 5.87
338 339 4.785512 AAGAGAGTGCGGCGCGAG 62.786 66.667 28.09 3.39 0.00 5.03
375 376 4.451150 CTGTAGCAGGCGCCCGAA 62.451 66.667 26.15 3.00 39.83 4.30
376 377 3.950794 CTGTAGCAGGCGCCCGAAA 62.951 63.158 26.15 3.45 39.83 3.46
377 378 2.513897 GTAGCAGGCGCCCGAAAT 60.514 61.111 26.15 7.71 39.83 2.17
378 379 1.227438 GTAGCAGGCGCCCGAAATA 60.227 57.895 26.15 6.58 39.83 1.40
379 380 1.227438 TAGCAGGCGCCCGAAATAC 60.227 57.895 26.15 4.70 39.83 1.89
380 381 1.962321 TAGCAGGCGCCCGAAATACA 61.962 55.000 26.15 0.00 39.83 2.29
381 382 3.098555 CAGGCGCCCGAAATACAC 58.901 61.111 26.15 0.00 0.00 2.90
382 383 2.124860 AGGCGCCCGAAATACACC 60.125 61.111 26.15 0.00 0.00 4.16
383 384 3.569690 GGCGCCCGAAATACACCG 61.570 66.667 18.11 0.00 0.00 4.94
384 385 4.232248 GCGCCCGAAATACACCGC 62.232 66.667 0.00 0.00 34.50 5.68
385 386 2.816083 CGCCCGAAATACACCGCA 60.816 61.111 0.00 0.00 0.00 5.69
386 387 2.789249 GCCCGAAATACACCGCAC 59.211 61.111 0.00 0.00 0.00 5.34
387 388 3.086309 CCCGAAATACACCGCACG 58.914 61.111 0.00 0.00 0.00 5.34
388 389 2.457778 CCCGAAATACACCGCACGG 61.458 63.158 7.71 7.71 40.03 4.94
389 390 2.457778 CCGAAATACACCGCACGGG 61.458 63.158 14.51 5.08 43.62 5.28
390 391 1.446445 CGAAATACACCGCACGGGA 60.446 57.895 14.51 0.00 39.97 5.14
391 392 0.808453 CGAAATACACCGCACGGGAT 60.808 55.000 14.51 3.28 39.97 3.85
392 393 1.536496 CGAAATACACCGCACGGGATA 60.536 52.381 14.51 5.56 39.97 2.59
393 394 2.132762 GAAATACACCGCACGGGATAG 58.867 52.381 14.51 2.99 39.97 2.08
394 395 1.117150 AATACACCGCACGGGATAGT 58.883 50.000 14.51 8.71 39.97 2.12
395 396 0.387929 ATACACCGCACGGGATAGTG 59.612 55.000 14.51 4.58 44.47 2.74
402 403 3.733236 CACGGGATAGTGCTTTCGA 57.267 52.632 0.00 0.00 35.17 3.71
403 404 1.278238 CACGGGATAGTGCTTTCGAC 58.722 55.000 0.00 0.00 35.17 4.20
404 405 0.175073 ACGGGATAGTGCTTTCGACC 59.825 55.000 0.00 0.00 0.00 4.79
405 406 0.870307 CGGGATAGTGCTTTCGACCG 60.870 60.000 0.00 0.00 0.00 4.79
406 407 1.152383 GGGATAGTGCTTTCGACCGC 61.152 60.000 0.00 0.00 0.00 5.68
407 408 1.480219 GGATAGTGCTTTCGACCGCG 61.480 60.000 0.00 0.00 39.35 6.46
408 409 2.078958 GATAGTGCTTTCGACCGCGC 62.079 60.000 0.00 9.90 37.46 6.86
409 410 2.829043 ATAGTGCTTTCGACCGCGCA 62.829 55.000 17.65 7.12 39.01 6.09
410 411 4.719616 GTGCTTTCGACCGCGCAC 62.720 66.667 8.75 11.37 44.73 5.34
414 415 4.912485 TTTCGACCGCGCACCCAA 62.912 61.111 8.75 0.00 37.46 4.12
421 422 2.735478 CGCGCACCCAACTCGTTA 60.735 61.111 8.75 0.00 0.00 3.18
422 423 2.098233 CGCGCACCCAACTCGTTAT 61.098 57.895 8.75 0.00 0.00 1.89
423 424 0.802994 CGCGCACCCAACTCGTTATA 60.803 55.000 8.75 0.00 0.00 0.98
424 425 0.928229 GCGCACCCAACTCGTTATAG 59.072 55.000 0.30 0.00 0.00 1.31
425 426 0.928229 CGCACCCAACTCGTTATAGC 59.072 55.000 0.00 0.00 0.00 2.97
426 427 0.928229 GCACCCAACTCGTTATAGCG 59.072 55.000 2.12 2.12 0.00 4.26
427 428 0.928229 CACCCAACTCGTTATAGCGC 59.072 55.000 0.00 0.00 0.00 5.92
428 429 0.526954 ACCCAACTCGTTATAGCGCG 60.527 55.000 0.00 0.00 0.00 6.86
429 430 1.558383 CCAACTCGTTATAGCGCGC 59.442 57.895 26.66 26.66 0.00 6.86
430 431 1.143373 CCAACTCGTTATAGCGCGCA 61.143 55.000 35.10 19.76 0.00 6.09
431 432 0.044161 CAACTCGTTATAGCGCGCAC 60.044 55.000 35.10 21.40 0.00 5.34
432 433 1.469126 AACTCGTTATAGCGCGCACG 61.469 55.000 35.10 31.53 44.07 5.34
451 452 4.622456 CGTTTTTGCGCGCCCACT 62.622 61.111 30.77 0.00 0.00 4.00
452 453 3.029735 GTTTTTGCGCGCCCACTG 61.030 61.111 30.77 0.00 0.00 3.66
453 454 4.277593 TTTTTGCGCGCCCACTGG 62.278 61.111 30.77 0.00 0.00 4.00
462 463 4.767255 GCCCACTGGAGCGACCTG 62.767 72.222 0.00 7.93 42.26 4.00
463 464 4.767255 CCCACTGGAGCGACCTGC 62.767 72.222 0.00 0.00 46.98 4.85
490 491 3.475774 CGCGCGCTAAAACGGACT 61.476 61.111 30.48 0.00 0.00 3.85
491 492 2.153945 CGCGCGCTAAAACGGACTA 61.154 57.895 30.48 0.00 0.00 2.59
492 493 1.676438 CGCGCGCTAAAACGGACTAA 61.676 55.000 30.48 0.00 0.00 2.24
493 494 0.648958 GCGCGCTAAAACGGACTAAT 59.351 50.000 26.67 0.00 0.00 1.73
494 495 1.061566 GCGCGCTAAAACGGACTAATT 59.938 47.619 26.67 0.00 0.00 1.40
495 496 2.475022 GCGCGCTAAAACGGACTAATTT 60.475 45.455 26.67 0.00 0.00 1.82
496 497 3.242059 GCGCGCTAAAACGGACTAATTTA 60.242 43.478 26.67 0.00 0.00 1.40
497 498 4.258331 CGCGCTAAAACGGACTAATTTAC 58.742 43.478 5.56 0.00 0.00 2.01
498 499 4.258331 GCGCTAAAACGGACTAATTTACG 58.742 43.478 0.00 0.00 0.00 3.18
499 500 4.780013 GCGCTAAAACGGACTAATTTACGG 60.780 45.833 0.00 0.00 0.00 4.02
500 501 4.327087 CGCTAAAACGGACTAATTTACGGT 59.673 41.667 0.00 0.00 0.00 4.83
501 502 5.553721 GCTAAAACGGACTAATTTACGGTG 58.446 41.667 0.00 0.00 0.00 4.94
502 503 4.408993 AAAACGGACTAATTTACGGTGC 57.591 40.909 0.00 0.00 0.00 5.01
503 504 1.632422 ACGGACTAATTTACGGTGCG 58.368 50.000 7.76 7.76 46.87 5.34
504 505 0.925466 CGGACTAATTTACGGTGCGG 59.075 55.000 0.00 0.00 40.17 5.69
505 506 1.736696 CGGACTAATTTACGGTGCGGT 60.737 52.381 0.00 0.00 40.17 5.68
506 507 1.662122 GGACTAATTTACGGTGCGGTG 59.338 52.381 0.00 0.00 0.00 4.94
507 508 1.061566 GACTAATTTACGGTGCGGTGC 59.938 52.381 0.00 0.00 0.00 5.01
508 509 1.338389 ACTAATTTACGGTGCGGTGCT 60.338 47.619 0.00 0.00 0.00 4.40
509 510 2.094078 ACTAATTTACGGTGCGGTGCTA 60.094 45.455 0.00 0.00 0.00 3.49
510 511 1.365699 AATTTACGGTGCGGTGCTAG 58.634 50.000 0.00 0.00 0.00 3.42
511 512 0.248289 ATTTACGGTGCGGTGCTAGT 59.752 50.000 0.00 0.00 0.00 2.57
512 513 0.033781 TTTACGGTGCGGTGCTAGTT 59.966 50.000 0.00 0.00 0.00 2.24
513 514 0.033781 TTACGGTGCGGTGCTAGTTT 59.966 50.000 0.00 0.00 0.00 2.66
514 515 0.887247 TACGGTGCGGTGCTAGTTTA 59.113 50.000 0.00 0.00 0.00 2.01
515 516 0.389426 ACGGTGCGGTGCTAGTTTAG 60.389 55.000 0.00 0.00 0.00 1.85
523 524 3.006706 GCTAGTTTAGCGCGGCTG 58.993 61.111 8.83 0.00 42.62 4.85
524 525 1.810030 GCTAGTTTAGCGCGGCTGT 60.810 57.895 8.83 0.00 42.62 4.40
525 526 1.359459 GCTAGTTTAGCGCGGCTGTT 61.359 55.000 8.83 0.00 42.62 3.16
526 527 0.370273 CTAGTTTAGCGCGGCTGTTG 59.630 55.000 8.83 0.00 40.10 3.33
527 528 1.017177 TAGTTTAGCGCGGCTGTTGG 61.017 55.000 8.83 0.00 40.10 3.77
528 529 2.031314 TTTAGCGCGGCTGTTGGA 59.969 55.556 8.83 0.00 40.10 3.53
529 530 2.032634 TTTAGCGCGGCTGTTGGAG 61.033 57.895 8.83 0.00 40.10 3.86
530 531 2.443260 TTTAGCGCGGCTGTTGGAGA 62.443 55.000 8.83 0.00 40.10 3.71
531 532 2.238847 TTAGCGCGGCTGTTGGAGAT 62.239 55.000 8.83 0.00 40.10 2.75
532 533 2.906182 TAGCGCGGCTGTTGGAGATG 62.906 60.000 8.83 0.00 40.10 2.90
533 534 3.869272 CGCGGCTGTTGGAGATGC 61.869 66.667 0.00 0.00 0.00 3.91
534 535 2.437359 GCGGCTGTTGGAGATGCT 60.437 61.111 0.00 0.00 0.00 3.79
535 536 2.467826 GCGGCTGTTGGAGATGCTC 61.468 63.158 0.00 0.00 0.00 4.26
547 548 4.367039 GGAGATGCTCCTAGACTAGACT 57.633 50.000 11.27 0.00 46.41 3.24
548 549 5.492855 GGAGATGCTCCTAGACTAGACTA 57.507 47.826 11.27 0.00 46.41 2.59
549 550 5.488341 GGAGATGCTCCTAGACTAGACTAG 58.512 50.000 18.79 18.79 46.41 2.57
566 567 4.215613 AGACTAGGCCAATTTGACGAAAAC 59.784 41.667 5.01 0.00 0.00 2.43
569 570 2.693074 AGGCCAATTTGACGAAAACAGT 59.307 40.909 5.01 0.00 0.00 3.55
577 578 4.993029 TTGACGAAAACAGTGGGATTTT 57.007 36.364 0.00 0.00 0.00 1.82
579 580 4.677584 TGACGAAAACAGTGGGATTTTTG 58.322 39.130 0.00 0.00 35.93 2.44
601 603 1.697082 TACCGCCCGCCCATATTTGA 61.697 55.000 0.00 0.00 0.00 2.69
607 609 1.681780 CCCGCCCATATTTGACACTGT 60.682 52.381 0.00 0.00 0.00 3.55
614 616 5.745227 CCCATATTTGACACTGTAGTTCCT 58.255 41.667 0.00 0.00 0.00 3.36
685 691 0.529119 ACGAACAAGGAAACGAGCGT 60.529 50.000 0.00 0.00 0.00 5.07
701 716 5.947443 ACGAGCGTGAAAATTAGTACTACT 58.053 37.500 0.91 0.00 0.00 2.57
705 720 7.482743 CGAGCGTGAAAATTAGTACTACTAACA 59.517 37.037 10.31 2.77 42.78 2.41
757 772 3.376078 GTACGGTGGGCACGGAGA 61.376 66.667 0.00 0.00 35.84 3.71
814 832 3.228017 TGAACCGACGGCAGTGGA 61.228 61.111 15.39 0.00 0.00 4.02
815 833 2.029964 GAACCGACGGCAGTGGAA 59.970 61.111 15.39 0.00 0.00 3.53
816 834 1.375523 GAACCGACGGCAGTGGAAT 60.376 57.895 15.39 0.00 0.00 3.01
817 835 1.635663 GAACCGACGGCAGTGGAATG 61.636 60.000 15.39 0.00 0.00 2.67
818 836 2.819595 CCGACGGCAGTGGAATGG 60.820 66.667 0.00 0.00 0.00 3.16
819 837 3.499737 CGACGGCAGTGGAATGGC 61.500 66.667 0.00 0.00 42.07 4.40
1024 4486 0.527600 GATGCACCGTGCTACGATCA 60.528 55.000 23.52 2.47 46.05 2.92
1030 4492 1.368850 CGTGCTACGATCATCGCGA 60.369 57.895 13.09 13.09 46.05 5.87
1234 4714 2.744768 GCCTTCGGCTTCTTCTGCG 61.745 63.158 0.00 0.00 46.69 5.18
1241 4743 3.049674 CTTCTTCTGCGCCGCCAA 61.050 61.111 6.63 0.00 0.00 4.52
1243 4745 4.617520 TCTTCTGCGCCGCCAACA 62.618 61.111 6.63 0.00 0.00 3.33
1473 4975 2.100879 GAGCGGTCTTGTGGTCCACT 62.101 60.000 22.56 0.00 35.11 4.00
1539 5042 1.237285 GCAACCTGGTGCTGTTCGAT 61.237 55.000 0.00 0.00 41.51 3.59
1741 5244 1.437986 CAGCGCTACTACCACCTCC 59.562 63.158 10.99 0.00 0.00 4.30
2454 5967 8.953313 ACTATACGCACATAATACAGTAGCATA 58.047 33.333 0.00 0.00 0.00 3.14
2455 5968 9.952188 CTATACGCACATAATACAGTAGCATAT 57.048 33.333 0.00 0.00 0.00 1.78
2579 6092 6.070251 TCCATTCTCTTTACATTGAGCACCTA 60.070 38.462 0.00 0.00 0.00 3.08
2597 6110 2.099592 CCTAATGACAAATGCATGGCGT 59.900 45.455 0.00 0.00 0.00 5.68
2617 6212 3.437049 CGTCTCAGTCGATGCTATATCCA 59.563 47.826 0.00 0.00 0.00 3.41
2619 6214 5.577835 GTCTCAGTCGATGCTATATCCATC 58.422 45.833 0.00 6.32 36.58 3.51
2624 6219 6.379417 TCAGTCGATGCTATATCCATCAGATT 59.621 38.462 13.58 7.87 39.17 2.40
2642 6237 7.246674 TCAGATTTTACATTAAGATCCGTGC 57.753 36.000 0.00 0.00 31.61 5.34
2732 6391 6.212888 AGCAATTAACCATGACATTTCTCC 57.787 37.500 0.00 0.00 0.00 3.71
2763 6422 6.436218 TCCTATGCATATAGAAACGGAGCTTA 59.564 38.462 6.92 0.00 38.88 3.09
3204 6868 0.250295 CCGGCCTTGACAAGTCTGAA 60.250 55.000 14.03 0.00 0.00 3.02
3205 6869 0.868406 CGGCCTTGACAAGTCTGAAC 59.132 55.000 14.03 0.00 0.00 3.18
3261 6925 5.048013 CCTTTCCATCCAAAGTTCTACCAAC 60.048 44.000 0.00 0.00 32.26 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.554036 GGAGAGGATGGTGGCCGC 62.554 72.222 8.12 8.12 0.00 6.53
3 4 2.765807 AGGAGAGGATGGTGGCCG 60.766 66.667 0.00 0.00 0.00 6.13
4 5 2.801631 CGAGGAGAGGATGGTGGCC 61.802 68.421 0.00 0.00 0.00 5.36
5 6 2.801631 CCGAGGAGAGGATGGTGGC 61.802 68.421 0.00 0.00 0.00 5.01
6 7 2.801631 GCCGAGGAGAGGATGGTGG 61.802 68.421 0.00 0.00 0.00 4.61
7 8 2.818132 GCCGAGGAGAGGATGGTG 59.182 66.667 0.00 0.00 0.00 4.17
8 9 2.835431 CGCCGAGGAGAGGATGGT 60.835 66.667 0.00 0.00 0.00 3.55
10 11 4.292178 GCCGCCGAGGAGAGGATG 62.292 72.222 0.91 0.00 45.00 3.51
22 23 4.554036 GAGAGGATGGTGGCCGCC 62.554 72.222 29.34 29.34 0.00 6.13
23 24 4.554036 GGAGAGGATGGTGGCCGC 62.554 72.222 8.12 8.12 0.00 6.53
24 25 2.765807 AGGAGAGGATGGTGGCCG 60.766 66.667 0.00 0.00 0.00 6.13
25 26 2.801631 CGAGGAGAGGATGGTGGCC 61.802 68.421 0.00 0.00 0.00 5.36
26 27 2.801631 CCGAGGAGAGGATGGTGGC 61.802 68.421 0.00 0.00 0.00 5.01
27 28 2.801631 GCCGAGGAGAGGATGGTGG 61.802 68.421 0.00 0.00 0.00 4.61
28 29 2.801631 GGCCGAGGAGAGGATGGTG 61.802 68.421 0.00 0.00 0.00 4.17
29 30 2.444895 GGCCGAGGAGAGGATGGT 60.445 66.667 0.00 0.00 0.00 3.55
30 31 3.610669 CGGCCGAGGAGAGGATGG 61.611 72.222 24.07 0.00 0.00 3.51
31 32 4.292178 GCGGCCGAGGAGAGGATG 62.292 72.222 33.48 0.00 0.00 3.51
32 33 4.841617 TGCGGCCGAGGAGAGGAT 62.842 66.667 33.48 0.00 0.00 3.24
39 40 4.845580 AAGATGCTGCGGCCGAGG 62.846 66.667 33.48 21.27 37.74 4.63
40 41 3.570638 CAAGATGCTGCGGCCGAG 61.571 66.667 33.48 23.56 37.74 4.63
43 44 3.056313 GAACCAAGATGCTGCGGCC 62.056 63.158 16.57 0.00 37.74 6.13
44 45 1.589716 AAGAACCAAGATGCTGCGGC 61.590 55.000 11.65 11.65 39.26 6.53
45 46 0.883833 AAAGAACCAAGATGCTGCGG 59.116 50.000 0.00 0.00 0.00 5.69
46 47 1.973138 CAAAGAACCAAGATGCTGCG 58.027 50.000 0.00 0.00 0.00 5.18
47 48 1.670967 GGCAAAGAACCAAGATGCTGC 60.671 52.381 0.00 0.00 37.20 5.25
48 49 1.614903 TGGCAAAGAACCAAGATGCTG 59.385 47.619 0.00 0.00 37.20 4.41
49 50 1.999648 TGGCAAAGAACCAAGATGCT 58.000 45.000 0.00 0.00 37.20 3.79
50 51 3.323751 AATGGCAAAGAACCAAGATGC 57.676 42.857 0.00 0.00 41.49 3.91
51 52 4.692155 GGAAAATGGCAAAGAACCAAGATG 59.308 41.667 0.00 0.00 41.49 2.90
52 53 4.594491 AGGAAAATGGCAAAGAACCAAGAT 59.406 37.500 0.00 0.00 41.49 2.40
53 54 3.966665 AGGAAAATGGCAAAGAACCAAGA 59.033 39.130 0.00 0.00 41.49 3.02
54 55 4.202243 TGAGGAAAATGGCAAAGAACCAAG 60.202 41.667 0.00 0.00 41.49 3.61
55 56 3.708631 TGAGGAAAATGGCAAAGAACCAA 59.291 39.130 0.00 0.00 41.49 3.67
56 57 3.069443 GTGAGGAAAATGGCAAAGAACCA 59.931 43.478 0.00 0.00 42.61 3.67
57 58 3.554960 GGTGAGGAAAATGGCAAAGAACC 60.555 47.826 0.00 0.00 0.00 3.62
58 59 3.321968 AGGTGAGGAAAATGGCAAAGAAC 59.678 43.478 0.00 0.00 0.00 3.01
59 60 3.573967 GAGGTGAGGAAAATGGCAAAGAA 59.426 43.478 0.00 0.00 0.00 2.52
60 61 3.157087 GAGGTGAGGAAAATGGCAAAGA 58.843 45.455 0.00 0.00 0.00 2.52
61 62 2.095059 CGAGGTGAGGAAAATGGCAAAG 60.095 50.000 0.00 0.00 0.00 2.77
62 63 1.885887 CGAGGTGAGGAAAATGGCAAA 59.114 47.619 0.00 0.00 0.00 3.68
63 64 1.202879 ACGAGGTGAGGAAAATGGCAA 60.203 47.619 0.00 0.00 0.00 4.52
64 65 0.400213 ACGAGGTGAGGAAAATGGCA 59.600 50.000 0.00 0.00 0.00 4.92
65 66 1.200020 CAACGAGGTGAGGAAAATGGC 59.800 52.381 0.00 0.00 0.00 4.40
66 67 1.812571 CCAACGAGGTGAGGAAAATGG 59.187 52.381 0.00 0.00 0.00 3.16
67 68 1.200020 GCCAACGAGGTGAGGAAAATG 59.800 52.381 0.00 0.00 40.61 2.32
68 69 1.073923 AGCCAACGAGGTGAGGAAAAT 59.926 47.619 0.00 0.00 40.61 1.82
69 70 0.472471 AGCCAACGAGGTGAGGAAAA 59.528 50.000 0.00 0.00 40.61 2.29
70 71 0.472471 AAGCCAACGAGGTGAGGAAA 59.528 50.000 0.00 0.00 40.61 3.13
71 72 0.034896 GAAGCCAACGAGGTGAGGAA 59.965 55.000 0.00 0.00 40.61 3.36
72 73 0.832135 AGAAGCCAACGAGGTGAGGA 60.832 55.000 0.00 0.00 40.61 3.71
73 74 0.035458 AAGAAGCCAACGAGGTGAGG 59.965 55.000 0.00 0.00 40.61 3.86
74 75 1.884235 AAAGAAGCCAACGAGGTGAG 58.116 50.000 0.00 0.00 40.61 3.51
75 76 2.158813 AGAAAAGAAGCCAACGAGGTGA 60.159 45.455 0.00 0.00 40.61 4.02
76 77 2.031682 CAGAAAAGAAGCCAACGAGGTG 60.032 50.000 0.00 0.00 40.61 4.00
77 78 2.222027 CAGAAAAGAAGCCAACGAGGT 58.778 47.619 0.00 0.00 40.61 3.85
78 79 1.537202 CCAGAAAAGAAGCCAACGAGG 59.463 52.381 0.00 0.00 41.84 4.63
79 80 1.068954 GCCAGAAAAGAAGCCAACGAG 60.069 52.381 0.00 0.00 0.00 4.18
80 81 0.951558 GCCAGAAAAGAAGCCAACGA 59.048 50.000 0.00 0.00 0.00 3.85
81 82 0.039165 GGCCAGAAAAGAAGCCAACG 60.039 55.000 0.00 0.00 45.07 4.10
82 83 3.894257 GGCCAGAAAAGAAGCCAAC 57.106 52.632 0.00 0.00 45.07 3.77
85 86 1.270826 GTGAAGGCCAGAAAAGAAGCC 59.729 52.381 5.01 0.00 46.13 4.35
86 87 1.956477 TGTGAAGGCCAGAAAAGAAGC 59.044 47.619 5.01 0.00 0.00 3.86
87 88 4.861102 ATTGTGAAGGCCAGAAAAGAAG 57.139 40.909 5.01 0.00 31.44 2.85
88 89 4.218417 GCTATTGTGAAGGCCAGAAAAGAA 59.782 41.667 5.01 0.00 31.44 2.52
89 90 3.758554 GCTATTGTGAAGGCCAGAAAAGA 59.241 43.478 5.01 0.00 31.44 2.52
90 91 3.760684 AGCTATTGTGAAGGCCAGAAAAG 59.239 43.478 5.01 0.00 31.44 2.27
91 92 3.766545 AGCTATTGTGAAGGCCAGAAAA 58.233 40.909 5.01 0.00 31.44 2.29
92 93 3.439857 AGCTATTGTGAAGGCCAGAAA 57.560 42.857 5.01 0.00 31.44 2.52
93 94 3.347216 GAAGCTATTGTGAAGGCCAGAA 58.653 45.455 5.01 0.00 32.27 3.02
94 95 2.356125 GGAAGCTATTGTGAAGGCCAGA 60.356 50.000 5.01 0.00 0.00 3.86
95 96 2.019984 GGAAGCTATTGTGAAGGCCAG 58.980 52.381 5.01 0.00 0.00 4.85
96 97 1.354031 TGGAAGCTATTGTGAAGGCCA 59.646 47.619 5.01 0.00 0.00 5.36
97 98 2.128771 TGGAAGCTATTGTGAAGGCC 57.871 50.000 0.00 0.00 0.00 5.19
111 112 5.571784 TGAGCTCAAAAATGCTATGGAAG 57.428 39.130 15.67 0.00 39.91 3.46
112 113 5.653330 TGATGAGCTCAAAAATGCTATGGAA 59.347 36.000 22.50 0.00 39.91 3.53
113 114 5.195185 TGATGAGCTCAAAAATGCTATGGA 58.805 37.500 22.50 0.00 39.91 3.41
114 115 5.509716 TGATGAGCTCAAAAATGCTATGG 57.490 39.130 22.50 0.00 39.91 2.74
115 116 6.971602 AGATGATGAGCTCAAAAATGCTATG 58.028 36.000 22.50 0.00 39.91 2.23
116 117 6.207025 GGAGATGATGAGCTCAAAAATGCTAT 59.793 38.462 22.50 0.00 39.91 2.97
117 118 5.530171 GGAGATGATGAGCTCAAAAATGCTA 59.470 40.000 22.50 1.48 39.91 3.49
118 119 4.338682 GGAGATGATGAGCTCAAAAATGCT 59.661 41.667 22.50 13.09 42.82 3.79
119 120 4.338682 AGGAGATGATGAGCTCAAAAATGC 59.661 41.667 22.50 11.17 36.24 3.56
120 121 6.452494 AAGGAGATGATGAGCTCAAAAATG 57.548 37.500 22.50 0.00 36.24 2.32
121 122 6.096564 GGAAAGGAGATGATGAGCTCAAAAAT 59.903 38.462 22.50 14.28 36.24 1.82
122 123 5.416952 GGAAAGGAGATGATGAGCTCAAAAA 59.583 40.000 22.50 9.69 36.24 1.94
123 124 4.946157 GGAAAGGAGATGATGAGCTCAAAA 59.054 41.667 22.50 12.46 36.24 2.44
124 125 4.226846 AGGAAAGGAGATGATGAGCTCAAA 59.773 41.667 22.50 12.86 36.24 2.69
125 126 3.779183 AGGAAAGGAGATGATGAGCTCAA 59.221 43.478 22.50 5.35 36.24 3.02
126 127 3.382278 AGGAAAGGAGATGATGAGCTCA 58.618 45.455 20.79 20.79 36.24 4.26
127 128 3.642848 AGAGGAAAGGAGATGATGAGCTC 59.357 47.826 6.82 6.82 33.54 4.09
128 129 3.656496 AGAGGAAAGGAGATGATGAGCT 58.344 45.455 0.00 0.00 0.00 4.09
129 130 4.101430 AGAAGAGGAAAGGAGATGATGAGC 59.899 45.833 0.00 0.00 0.00 4.26
130 131 5.874897 AGAAGAGGAAAGGAGATGATGAG 57.125 43.478 0.00 0.00 0.00 2.90
131 132 5.963253 AGAAGAAGAGGAAAGGAGATGATGA 59.037 40.000 0.00 0.00 0.00 2.92
132 133 6.237887 AGAAGAAGAGGAAAGGAGATGATG 57.762 41.667 0.00 0.00 0.00 3.07
133 134 6.889595 AAGAAGAAGAGGAAAGGAGATGAT 57.110 37.500 0.00 0.00 0.00 2.45
134 135 6.694445 AAAGAAGAAGAGGAAAGGAGATGA 57.306 37.500 0.00 0.00 0.00 2.92
135 136 6.091986 CGAAAAGAAGAAGAGGAAAGGAGATG 59.908 42.308 0.00 0.00 0.00 2.90
136 137 6.014156 TCGAAAAGAAGAAGAGGAAAGGAGAT 60.014 38.462 0.00 0.00 0.00 2.75
137 138 5.304614 TCGAAAAGAAGAAGAGGAAAGGAGA 59.695 40.000 0.00 0.00 0.00 3.71
138 139 5.542779 TCGAAAAGAAGAAGAGGAAAGGAG 58.457 41.667 0.00 0.00 0.00 3.69
139 140 5.546621 TCGAAAAGAAGAAGAGGAAAGGA 57.453 39.130 0.00 0.00 0.00 3.36
140 141 6.809630 AATCGAAAAGAAGAAGAGGAAAGG 57.190 37.500 0.00 0.00 0.00 3.11
163 164 3.181476 GGAGCCACTGCAAGAAAGAAAAA 60.181 43.478 0.00 0.00 41.13 1.94
164 165 2.362077 GGAGCCACTGCAAGAAAGAAAA 59.638 45.455 0.00 0.00 41.13 2.29
165 166 1.956477 GGAGCCACTGCAAGAAAGAAA 59.044 47.619 0.00 0.00 41.13 2.52
166 167 1.609208 GGAGCCACTGCAAGAAAGAA 58.391 50.000 0.00 0.00 41.13 2.52
167 168 0.250901 GGGAGCCACTGCAAGAAAGA 60.251 55.000 0.00 0.00 41.13 2.52
168 169 1.246737 GGGGAGCCACTGCAAGAAAG 61.247 60.000 0.00 0.00 41.13 2.62
169 170 1.228552 GGGGAGCCACTGCAAGAAA 60.229 57.895 0.00 0.00 41.13 2.52
170 171 2.436109 GGGGAGCCACTGCAAGAA 59.564 61.111 0.00 0.00 41.13 2.52
171 172 4.020617 CGGGGAGCCACTGCAAGA 62.021 66.667 0.00 0.00 41.13 3.02
186 187 2.511600 CTGGAAACCCTAGCGCGG 60.512 66.667 8.83 0.00 0.00 6.46
187 188 3.195698 GCTGGAAACCCTAGCGCG 61.196 66.667 0.00 0.00 0.00 6.86
190 191 2.824489 GCCGCTGGAAACCCTAGC 60.824 66.667 0.00 0.00 0.00 3.42
191 192 2.511600 CGCCGCTGGAAACCCTAG 60.512 66.667 0.00 0.00 0.00 3.02
192 193 4.090588 CCGCCGCTGGAAACCCTA 62.091 66.667 0.00 0.00 0.00 3.53
217 218 3.384532 TACAACCGCGACCTCCCC 61.385 66.667 8.23 0.00 0.00 4.81
218 219 2.125793 GTACAACCGCGACCTCCC 60.126 66.667 8.23 0.00 0.00 4.30
219 220 1.445582 CTGTACAACCGCGACCTCC 60.446 63.158 8.23 0.00 0.00 4.30
220 221 2.092882 GCTGTACAACCGCGACCTC 61.093 63.158 8.23 0.00 0.00 3.85
221 222 2.048503 GCTGTACAACCGCGACCT 60.049 61.111 8.23 0.00 0.00 3.85
226 227 4.692475 ACCCCGCTGTACAACCGC 62.692 66.667 9.41 3.20 0.00 5.68
227 228 2.740826 CACCCCGCTGTACAACCG 60.741 66.667 0.00 2.73 0.00 4.44
228 229 1.375523 CTCACCCCGCTGTACAACC 60.376 63.158 0.00 0.00 0.00 3.77
229 230 2.033194 GCTCACCCCGCTGTACAAC 61.033 63.158 0.00 0.00 0.00 3.32
230 231 2.345991 GCTCACCCCGCTGTACAA 59.654 61.111 0.00 0.00 0.00 2.41
231 232 4.063967 CGCTCACCCCGCTGTACA 62.064 66.667 0.00 0.00 0.00 2.90
232 233 4.814294 CCGCTCACCCCGCTGTAC 62.814 72.222 0.00 0.00 0.00 2.90
300 301 4.517934 TCCTCCTCCTACGCCCCG 62.518 72.222 0.00 0.00 0.00 5.73
301 302 2.522193 CTCCTCCTCCTACGCCCC 60.522 72.222 0.00 0.00 0.00 5.80
302 303 1.529713 CTCTCCTCCTCCTACGCCC 60.530 68.421 0.00 0.00 0.00 6.13
303 304 0.106619 TTCTCTCCTCCTCCTACGCC 60.107 60.000 0.00 0.00 0.00 5.68
304 305 1.134037 TCTTCTCTCCTCCTCCTACGC 60.134 57.143 0.00 0.00 0.00 4.42
305 306 2.436542 TCTCTTCTCTCCTCCTCCTACG 59.563 54.545 0.00 0.00 0.00 3.51
306 307 3.458487 ACTCTCTTCTCTCCTCCTCCTAC 59.542 52.174 0.00 0.00 0.00 3.18
307 308 3.458118 CACTCTCTTCTCTCCTCCTCCTA 59.542 52.174 0.00 0.00 0.00 2.94
308 309 2.242196 CACTCTCTTCTCTCCTCCTCCT 59.758 54.545 0.00 0.00 0.00 3.69
309 310 2.654863 CACTCTCTTCTCTCCTCCTCC 58.345 57.143 0.00 0.00 0.00 4.30
310 311 2.024414 GCACTCTCTTCTCTCCTCCTC 58.976 57.143 0.00 0.00 0.00 3.71
311 312 1.681780 CGCACTCTCTTCTCTCCTCCT 60.682 57.143 0.00 0.00 0.00 3.69
312 313 0.738389 CGCACTCTCTTCTCTCCTCC 59.262 60.000 0.00 0.00 0.00 4.30
313 314 0.738389 CCGCACTCTCTTCTCTCCTC 59.262 60.000 0.00 0.00 0.00 3.71
314 315 1.319614 GCCGCACTCTCTTCTCTCCT 61.320 60.000 0.00 0.00 0.00 3.69
315 316 1.140804 GCCGCACTCTCTTCTCTCC 59.859 63.158 0.00 0.00 0.00 3.71
316 317 1.226547 CGCCGCACTCTCTTCTCTC 60.227 63.158 0.00 0.00 0.00 3.20
317 318 2.881389 CGCCGCACTCTCTTCTCT 59.119 61.111 0.00 0.00 0.00 3.10
318 319 2.883253 GCGCCGCACTCTCTTCTC 60.883 66.667 3.15 0.00 0.00 2.87
319 320 4.785512 CGCGCCGCACTCTCTTCT 62.786 66.667 10.75 0.00 0.00 2.85
320 321 4.778415 TCGCGCCGCACTCTCTTC 62.778 66.667 10.75 0.00 0.00 2.87
321 322 4.785512 CTCGCGCCGCACTCTCTT 62.786 66.667 10.75 0.00 0.00 2.85
358 359 3.824028 TATTTCGGGCGCCTGCTACAG 62.824 57.143 31.15 10.93 42.25 2.74
359 360 1.962321 TATTTCGGGCGCCTGCTACA 61.962 55.000 31.15 10.75 42.25 2.74
360 361 1.227438 TATTTCGGGCGCCTGCTAC 60.227 57.895 31.15 10.26 42.25 3.58
361 362 1.227438 GTATTTCGGGCGCCTGCTA 60.227 57.895 31.15 20.16 42.25 3.49
362 363 2.513897 GTATTTCGGGCGCCTGCT 60.514 61.111 31.15 18.86 42.25 4.24
363 364 2.822255 TGTATTTCGGGCGCCTGC 60.822 61.111 31.15 16.45 41.71 4.85
364 365 2.469516 GGTGTATTTCGGGCGCCTG 61.470 63.158 30.18 30.18 0.00 4.85
365 366 2.124860 GGTGTATTTCGGGCGCCT 60.125 61.111 28.56 8.66 0.00 5.52
366 367 3.569690 CGGTGTATTTCGGGCGCC 61.570 66.667 21.18 21.18 0.00 6.53
367 368 4.232248 GCGGTGTATTTCGGGCGC 62.232 66.667 0.00 0.00 0.00 6.53
368 369 2.816083 TGCGGTGTATTTCGGGCG 60.816 61.111 0.00 0.00 0.00 6.13
369 370 2.789249 GTGCGGTGTATTTCGGGC 59.211 61.111 0.00 0.00 0.00 6.13
370 371 2.457778 CCGTGCGGTGTATTTCGGG 61.458 63.158 1.93 0.00 35.25 5.14
371 372 2.457778 CCCGTGCGGTGTATTTCGG 61.458 63.158 9.90 0.00 38.05 4.30
372 373 0.808453 ATCCCGTGCGGTGTATTTCG 60.808 55.000 9.90 0.00 0.00 3.46
373 374 2.132762 CTATCCCGTGCGGTGTATTTC 58.867 52.381 9.90 0.00 0.00 2.17
374 375 1.483415 ACTATCCCGTGCGGTGTATTT 59.517 47.619 9.90 0.00 0.00 1.40
375 376 1.117150 ACTATCCCGTGCGGTGTATT 58.883 50.000 9.90 0.00 0.00 1.89
376 377 0.387929 CACTATCCCGTGCGGTGTAT 59.612 55.000 9.90 3.24 0.00 2.29
377 378 1.811195 CACTATCCCGTGCGGTGTA 59.189 57.895 9.90 1.60 0.00 2.90
378 379 2.577059 CACTATCCCGTGCGGTGT 59.423 61.111 9.90 0.46 0.00 4.16
384 385 1.278238 GTCGAAAGCACTATCCCGTG 58.722 55.000 0.00 0.00 37.94 4.94
385 386 0.175073 GGTCGAAAGCACTATCCCGT 59.825 55.000 0.00 0.00 0.00 5.28
386 387 0.870307 CGGTCGAAAGCACTATCCCG 60.870 60.000 0.00 0.00 0.00 5.14
387 388 1.152383 GCGGTCGAAAGCACTATCCC 61.152 60.000 8.30 0.00 0.00 3.85
388 389 1.480219 CGCGGTCGAAAGCACTATCC 61.480 60.000 12.84 0.00 38.10 2.59
389 390 1.917921 CGCGGTCGAAAGCACTATC 59.082 57.895 12.84 0.00 38.10 2.08
390 391 2.165301 GCGCGGTCGAAAGCACTAT 61.165 57.895 8.83 0.00 38.10 2.12
391 392 2.807895 GCGCGGTCGAAAGCACTA 60.808 61.111 8.83 0.00 38.10 2.74
392 393 4.961511 TGCGCGGTCGAAAGCACT 62.962 61.111 8.83 0.00 38.10 4.40
397 398 4.912485 TTGGGTGCGCGGTCGAAA 62.912 61.111 8.83 0.00 38.10 3.46
404 405 0.802994 TATAACGAGTTGGGTGCGCG 60.803 55.000 0.00 0.00 35.39 6.86
405 406 0.928229 CTATAACGAGTTGGGTGCGC 59.072 55.000 0.00 0.00 0.00 6.09
406 407 0.928229 GCTATAACGAGTTGGGTGCG 59.072 55.000 0.00 0.00 0.00 5.34
407 408 0.928229 CGCTATAACGAGTTGGGTGC 59.072 55.000 0.00 0.00 34.06 5.01
408 409 0.928229 GCGCTATAACGAGTTGGGTG 59.072 55.000 0.00 0.00 34.06 4.61
409 410 0.526954 CGCGCTATAACGAGTTGGGT 60.527 55.000 5.56 0.00 34.06 4.51
410 411 1.818221 GCGCGCTATAACGAGTTGGG 61.818 60.000 26.67 0.00 35.14 4.12
411 412 1.143373 TGCGCGCTATAACGAGTTGG 61.143 55.000 33.29 0.00 35.14 3.77
412 413 0.044161 GTGCGCGCTATAACGAGTTG 60.044 55.000 33.29 0.00 35.14 3.16
413 414 1.469126 CGTGCGCGCTATAACGAGTT 61.469 55.000 30.36 0.00 38.27 3.01
414 415 1.937846 CGTGCGCGCTATAACGAGT 60.938 57.895 30.36 0.00 38.27 4.18
415 416 2.830506 CGTGCGCGCTATAACGAG 59.169 61.111 30.36 11.11 38.27 4.18
434 435 4.622456 AGTGGGCGCGCAAAAACG 62.622 61.111 34.42 0.00 0.00 3.60
435 436 3.029735 CAGTGGGCGCGCAAAAAC 61.030 61.111 34.42 22.97 0.00 2.43
436 437 4.277593 CCAGTGGGCGCGCAAAAA 62.278 61.111 34.42 12.03 0.00 1.94
445 446 4.767255 CAGGTCGCTCCAGTGGGC 62.767 72.222 9.92 10.84 39.02 5.36
446 447 4.767255 GCAGGTCGCTCCAGTGGG 62.767 72.222 9.92 0.89 39.02 4.61
447 448 4.767255 GGCAGGTCGCTCCAGTGG 62.767 72.222 1.40 1.40 41.91 4.00
473 474 1.676438 TTAGTCCGTTTTAGCGCGCG 61.676 55.000 28.44 28.44 0.00 6.86
474 475 0.648958 ATTAGTCCGTTTTAGCGCGC 59.351 50.000 26.66 26.66 0.00 6.86
475 476 3.378959 AAATTAGTCCGTTTTAGCGCG 57.621 42.857 0.00 0.00 0.00 6.86
476 477 4.258331 CGTAAATTAGTCCGTTTTAGCGC 58.742 43.478 0.00 0.00 0.00 5.92
477 478 4.327087 ACCGTAAATTAGTCCGTTTTAGCG 59.673 41.667 0.00 0.00 0.00 4.26
478 479 5.553721 CACCGTAAATTAGTCCGTTTTAGC 58.446 41.667 0.00 0.00 0.00 3.09
479 480 5.553721 GCACCGTAAATTAGTCCGTTTTAG 58.446 41.667 0.00 0.00 0.00 1.85
480 481 4.091220 CGCACCGTAAATTAGTCCGTTTTA 59.909 41.667 0.00 0.00 0.00 1.52
481 482 3.120580 CGCACCGTAAATTAGTCCGTTTT 60.121 43.478 0.00 0.00 0.00 2.43
482 483 2.412770 CGCACCGTAAATTAGTCCGTTT 59.587 45.455 0.00 0.00 0.00 3.60
483 484 1.994779 CGCACCGTAAATTAGTCCGTT 59.005 47.619 0.00 0.00 0.00 4.44
484 485 1.632422 CGCACCGTAAATTAGTCCGT 58.368 50.000 0.00 0.00 0.00 4.69
485 486 0.925466 CCGCACCGTAAATTAGTCCG 59.075 55.000 0.00 0.00 0.00 4.79
486 487 1.662122 CACCGCACCGTAAATTAGTCC 59.338 52.381 0.00 0.00 0.00 3.85
487 488 1.061566 GCACCGCACCGTAAATTAGTC 59.938 52.381 0.00 0.00 0.00 2.59
488 489 1.081094 GCACCGCACCGTAAATTAGT 58.919 50.000 0.00 0.00 0.00 2.24
489 490 1.365699 AGCACCGCACCGTAAATTAG 58.634 50.000 0.00 0.00 0.00 1.73
490 491 2.094078 ACTAGCACCGCACCGTAAATTA 60.094 45.455 0.00 0.00 0.00 1.40
491 492 1.338389 ACTAGCACCGCACCGTAAATT 60.338 47.619 0.00 0.00 0.00 1.82
492 493 0.248289 ACTAGCACCGCACCGTAAAT 59.752 50.000 0.00 0.00 0.00 1.40
493 494 0.033781 AACTAGCACCGCACCGTAAA 59.966 50.000 0.00 0.00 0.00 2.01
494 495 0.033781 AAACTAGCACCGCACCGTAA 59.966 50.000 0.00 0.00 0.00 3.18
495 496 0.887247 TAAACTAGCACCGCACCGTA 59.113 50.000 0.00 0.00 0.00 4.02
496 497 0.389426 CTAAACTAGCACCGCACCGT 60.389 55.000 0.00 0.00 0.00 4.83
497 498 2.369870 CTAAACTAGCACCGCACCG 58.630 57.895 0.00 0.00 0.00 4.94
507 508 0.370273 CAACAGCCGCGCTAAACTAG 59.630 55.000 5.56 0.00 36.40 2.57
508 509 1.017177 CCAACAGCCGCGCTAAACTA 61.017 55.000 5.56 0.00 36.40 2.24
509 510 2.325082 CCAACAGCCGCGCTAAACT 61.325 57.895 5.56 0.00 36.40 2.66
510 511 2.175811 CCAACAGCCGCGCTAAAC 59.824 61.111 5.56 0.00 36.40 2.01
511 512 2.031314 TCCAACAGCCGCGCTAAA 59.969 55.556 5.56 0.00 36.40 1.85
512 513 2.238847 ATCTCCAACAGCCGCGCTAA 62.239 55.000 5.56 0.00 36.40 3.09
513 514 2.721167 ATCTCCAACAGCCGCGCTA 61.721 57.895 5.56 0.00 36.40 4.26
514 515 4.087892 ATCTCCAACAGCCGCGCT 62.088 61.111 5.56 0.00 40.77 5.92
515 516 3.869272 CATCTCCAACAGCCGCGC 61.869 66.667 0.00 0.00 0.00 6.86
516 517 3.869272 GCATCTCCAACAGCCGCG 61.869 66.667 0.00 0.00 0.00 6.46
517 518 2.437359 AGCATCTCCAACAGCCGC 60.437 61.111 0.00 0.00 0.00 6.53
518 519 3.805267 GAGCATCTCCAACAGCCG 58.195 61.111 0.00 0.00 0.00 5.52
536 537 6.508777 GTCAAATTGGCCTAGTCTAGTCTAG 58.491 44.000 14.88 14.88 37.66 2.43
537 538 5.067413 CGTCAAATTGGCCTAGTCTAGTCTA 59.933 44.000 3.32 0.00 0.00 2.59
538 539 4.142138 CGTCAAATTGGCCTAGTCTAGTCT 60.142 45.833 3.32 0.00 0.00 3.24
539 540 4.113354 CGTCAAATTGGCCTAGTCTAGTC 58.887 47.826 3.32 0.00 0.00 2.59
540 541 3.767673 TCGTCAAATTGGCCTAGTCTAGT 59.232 43.478 3.32 0.00 0.00 2.57
541 542 4.386867 TCGTCAAATTGGCCTAGTCTAG 57.613 45.455 3.32 0.00 0.00 2.43
542 543 4.811969 TTCGTCAAATTGGCCTAGTCTA 57.188 40.909 3.32 0.00 0.00 2.59
543 544 3.695830 TTCGTCAAATTGGCCTAGTCT 57.304 42.857 3.32 0.00 0.00 3.24
544 545 4.023536 TGTTTTCGTCAAATTGGCCTAGTC 60.024 41.667 3.32 0.00 0.00 2.59
545 546 3.886505 TGTTTTCGTCAAATTGGCCTAGT 59.113 39.130 3.32 0.00 0.00 2.57
546 547 4.023193 ACTGTTTTCGTCAAATTGGCCTAG 60.023 41.667 3.32 0.00 0.00 3.02
547 548 3.886505 ACTGTTTTCGTCAAATTGGCCTA 59.113 39.130 3.32 0.00 0.00 3.93
548 549 2.693074 ACTGTTTTCGTCAAATTGGCCT 59.307 40.909 3.32 0.00 0.00 5.19
549 550 2.794350 CACTGTTTTCGTCAAATTGGCC 59.206 45.455 0.00 0.00 0.00 5.36
550 551 2.794350 CCACTGTTTTCGTCAAATTGGC 59.206 45.455 0.00 0.00 0.00 4.52
566 567 2.351350 GCGGTACACAAAAATCCCACTG 60.351 50.000 0.00 0.00 0.00 3.66
569 570 1.249407 GGCGGTACACAAAAATCCCA 58.751 50.000 0.00 0.00 0.00 4.37
579 580 2.669777 AATATGGGCGGGCGGTACAC 62.670 60.000 0.00 0.00 0.00 2.90
607 609 1.229082 ACCCGCAGTGGAGGAACTA 60.229 57.895 0.00 0.00 41.55 2.24
635 637 1.583556 TGGGCCATTCTTCTAGCTCA 58.416 50.000 0.00 0.00 32.05 4.26
670 676 1.658994 TTTCACGCTCGTTTCCTTGT 58.341 45.000 0.00 0.00 0.00 3.16
701 716 6.819146 TGCATATCTGATACGTGGTTTTGTTA 59.181 34.615 0.00 0.00 0.00 2.41
705 720 5.182487 TGTGCATATCTGATACGTGGTTTT 58.818 37.500 0.00 0.00 0.00 2.43
1024 4486 1.667191 GGCAGCAGATCATCGCGAT 60.667 57.895 17.62 17.62 36.91 4.58
1030 4492 1.145598 CCACGAGGCAGCAGATCAT 59.854 57.895 0.00 0.00 0.00 2.45
1824 5327 3.397439 AGCTCGATGGCTGCCAGT 61.397 61.111 27.20 14.78 41.43 4.00
2169 5681 2.484241 GGTGTGGTCGTTGAAGTAGGTT 60.484 50.000 0.00 0.00 0.00 3.50
2170 5682 1.069668 GGTGTGGTCGTTGAAGTAGGT 59.930 52.381 0.00 0.00 0.00 3.08
2214 5726 3.753434 CACGCCTCCTCGCTCACT 61.753 66.667 0.00 0.00 0.00 3.41
2406 5919 4.220821 GTGTTCAGGAGTCATCAGTTCCTA 59.779 45.833 0.00 0.00 39.28 2.94
2564 6077 7.537715 CATTTGTCATTAGGTGCTCAATGTAA 58.462 34.615 0.00 0.00 34.45 2.41
2579 6092 1.820519 AGACGCCATGCATTTGTCATT 59.179 42.857 19.34 3.26 32.08 2.57
2597 6110 5.256474 TGATGGATATAGCATCGACTGAGA 58.744 41.667 0.00 0.00 0.00 3.27
2617 6212 7.498900 TGCACGGATCTTAATGTAAAATCTGAT 59.501 33.333 0.00 0.00 0.00 2.90
2619 6214 7.015226 TGCACGGATCTTAATGTAAAATCTG 57.985 36.000 0.00 0.00 0.00 2.90
2624 6219 6.821160 TGAGATTGCACGGATCTTAATGTAAA 59.179 34.615 1.03 0.00 34.13 2.01
2632 6227 2.736719 CGACTGAGATTGCACGGATCTT 60.737 50.000 1.03 0.00 34.13 2.40
2660 6318 1.291109 TGTATGGGGTGTGGTTAGGG 58.709 55.000 0.00 0.00 0.00 3.53
2732 6391 4.456280 TTCTATATGCATAGGAGCCACG 57.544 45.455 12.79 0.00 35.72 4.94
2763 6422 2.679837 CCAATGTGAGCGCAGTTCTATT 59.320 45.455 11.47 1.56 39.00 1.73
2801 6464 7.982919 TCTTCATTTTATTCATTTCCATGGCTG 59.017 33.333 6.96 4.63 0.00 4.85
2802 6465 8.081517 TCTTCATTTTATTCATTTCCATGGCT 57.918 30.769 6.96 0.00 0.00 4.75
2927 6590 6.482835 TGGCGTATTCAAAAAGATATGTTCG 58.517 36.000 0.00 0.00 0.00 3.95
3018 6681 3.952323 TCCGTTGTGTATGTTGGGAAAAA 59.048 39.130 0.00 0.00 0.00 1.94
3127 6790 9.401873 GGTTTAACACATGTTACCTTAATTGTC 57.598 33.333 3.95 0.00 39.92 3.18
3204 6868 1.304713 CAGGCCTGGGATTTGCAGT 60.305 57.895 26.14 0.00 0.00 4.40
3205 6869 2.056223 CCAGGCCTGGGATTTGCAG 61.056 63.158 40.24 14.42 46.81 4.41
3239 6903 5.701224 AGTTGGTAGAACTTTGGATGGAAA 58.299 37.500 0.00 0.00 0.00 3.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.