Multiple sequence alignment - TraesCS3B01G562700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G562700 chr3B 100.000 3576 0 0 1 3576 795838469 795842044 0.000000e+00 6604.0
1 TraesCS3B01G562700 chr3B 96.923 65 1 1 405 469 795838557 795838620 1.360000e-19 108.0
2 TraesCS3B01G562700 chr3B 96.923 65 1 1 89 152 795838873 795838937 1.360000e-19 108.0
3 TraesCS3B01G562700 chr3D 94.682 2200 91 12 503 2697 593235244 593237422 0.000000e+00 3391.0
4 TraesCS3B01G562700 chr3A 91.217 2243 112 26 405 2594 724514573 724516783 0.000000e+00 2972.0
5 TraesCS3B01G562700 chr3A 83.652 679 66 25 2697 3343 712495422 712494757 6.610000e-167 597.0
6 TraesCS3B01G562700 chr3A 91.579 95 8 0 405 499 724512719 724512813 8.060000e-27 132.0
7 TraesCS3B01G562700 chr3A 100.000 30 0 0 470 499 724510930 724510959 4.990000e-04 56.5
8 TraesCS3B01G562700 chr4D 91.621 919 45 14 2685 3576 218125833 218124920 0.000000e+00 1242.0
9 TraesCS3B01G562700 chr4D 91.621 919 45 13 2685 3576 218255096 218256009 0.000000e+00 1242.0
10 TraesCS3B01G562700 chr4D 75.702 1033 205 38 1426 2438 6424440 6425446 3.230000e-130 475.0
11 TraesCS3B01G562700 chr6D 91.731 907 44 14 2696 3576 186998014 186997113 0.000000e+00 1230.0
12 TraesCS3B01G562700 chr6D 76.955 716 119 35 1418 2119 452077630 452078313 2.030000e-97 366.0
13 TraesCS3B01G562700 chr6D 92.975 242 16 1 164 405 464734454 464734694 5.680000e-93 351.0
14 TraesCS3B01G562700 chr6D 76.119 670 116 33 1418 2074 462405283 462405921 9.640000e-81 311.0
15 TraesCS3B01G562700 chr6D 100.000 53 0 0 1 53 11792563 11792615 8.170000e-17 99.0
16 TraesCS3B01G562700 chr6D 100.000 53 0 0 1 53 457147519 457147571 8.170000e-17 99.0
17 TraesCS3B01G562700 chr4A 90.273 915 48 19 2699 3576 111092534 111093444 0.000000e+00 1158.0
18 TraesCS3B01G562700 chr4A 90.076 786 43 15 2697 3448 605009505 605008721 0.000000e+00 987.0
19 TraesCS3B01G562700 chr4A 76.068 1053 194 48 1412 2438 597014700 597015720 2.480000e-136 496.0
20 TraesCS3B01G562700 chrUn 89.651 918 54 19 2696 3576 40880181 40881094 0.000000e+00 1131.0
21 TraesCS3B01G562700 chrUn 91.324 438 24 8 3148 3576 387238141 387238573 1.430000e-163 586.0
22 TraesCS3B01G562700 chrUn 91.096 438 25 8 3148 3576 407795794 407796226 6.660000e-162 580.0
23 TraesCS3B01G562700 chrUn 91.034 435 25 8 3151 3576 377328591 377328162 3.100000e-160 575.0
24 TraesCS3B01G562700 chrUn 91.509 424 23 7 3148 3562 428280120 428279701 4.010000e-159 571.0
25 TraesCS3B01G562700 chrUn 91.373 255 18 4 155 407 80174717 80174969 2.640000e-91 346.0
26 TraesCS3B01G562700 chr6A 89.227 789 47 17 2697 3448 572847094 572846307 0.000000e+00 952.0
27 TraesCS3B01G562700 chr6A 76.503 732 120 38 1418 2132 609157826 609158522 5.680000e-93 351.0
28 TraesCS3B01G562700 chr4B 87.324 497 32 12 2697 3164 502241791 502241297 1.130000e-149 540.0
29 TraesCS3B01G562700 chr4B 75.819 1038 195 47 1426 2438 11657214 11656208 3.230000e-130 475.0
30 TraesCS3B01G562700 chr5D 76.730 997 197 28 1412 2395 491527755 491528729 1.140000e-144 523.0
31 TraesCS3B01G562700 chr5D 72.565 955 214 39 1412 2348 356090445 356091369 5.880000e-68 268.0
32 TraesCS3B01G562700 chr5D 100.000 53 0 0 1 53 553947632 553947684 8.170000e-17 99.0
33 TraesCS3B01G562700 chr5A 76.690 991 194 29 1419 2395 613700673 613701640 1.900000e-142 516.0
34 TraesCS3B01G562700 chr5A 72.565 955 214 38 1412 2348 457790972 457791896 5.880000e-68 268.0
35 TraesCS3B01G562700 chr5A 85.271 258 17 8 2697 2933 680282565 680282822 2.760000e-61 246.0
36 TraesCS3B01G562700 chr5B 76.176 999 201 29 1412 2396 606301626 606302601 3.210000e-135 492.0
37 TraesCS3B01G562700 chr5B 91.837 245 19 1 163 407 381041332 381041089 1.230000e-89 340.0
38 TraesCS3B01G562700 chr5B 73.620 743 164 30 1664 2393 420982179 420981456 1.270000e-64 257.0
39 TraesCS3B01G562700 chr6B 76.280 801 132 44 1418 2198 704852629 704851867 1.210000e-99 374.0
40 TraesCS3B01G562700 chr6B 92.975 242 15 2 164 404 504600907 504600667 5.680000e-93 351.0
41 TraesCS3B01G562700 chr6B 87.097 248 17 5 2710 2942 191425487 191425734 2.120000e-67 267.0
42 TraesCS3B01G562700 chr2B 91.892 259 18 3 155 412 657841471 657841215 3.390000e-95 359.0
43 TraesCS3B01G562700 chr7B 92.946 241 16 1 164 404 98977565 98977804 2.040000e-92 350.0
44 TraesCS3B01G562700 chr1B 92.308 247 17 2 163 408 48620330 48620575 2.040000e-92 350.0
45 TraesCS3B01G562700 chr1B 92.623 244 17 1 163 406 414777678 414777436 2.040000e-92 350.0
46 TraesCS3B01G562700 chr1D 92.339 248 14 5 163 409 309990572 309990329 7.350000e-92 348.0
47 TraesCS3B01G562700 chr7D 100.000 53 0 0 1 53 426683485 426683433 8.170000e-17 99.0
48 TraesCS3B01G562700 chr7A 100.000 53 0 0 1 53 726394789 726394841 8.170000e-17 99.0
49 TraesCS3B01G562700 chr2D 100.000 53 0 0 1 53 6503653 6503601 8.170000e-17 99.0
50 TraesCS3B01G562700 chr2D 100.000 53 0 0 1 53 545748744 545748796 8.170000e-17 99.0
51 TraesCS3B01G562700 chr2D 100.000 53 0 0 1 53 560595153 560595205 8.170000e-17 99.0
52 TraesCS3B01G562700 chr1A 100.000 53 0 0 1 53 117753813 117753865 8.170000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G562700 chr3B 795838469 795842044 3575 False 2273.333333 6604 97.948667 1 3576 3 chr3B.!!$F1 3575
1 TraesCS3B01G562700 chr3D 593235244 593237422 2178 False 3391.000000 3391 94.682000 503 2697 1 chr3D.!!$F1 2194
2 TraesCS3B01G562700 chr3A 724510930 724516783 5853 False 1053.500000 2972 94.265333 405 2594 3 chr3A.!!$F1 2189
3 TraesCS3B01G562700 chr3A 712494757 712495422 665 True 597.000000 597 83.652000 2697 3343 1 chr3A.!!$R1 646
4 TraesCS3B01G562700 chr4D 218124920 218125833 913 True 1242.000000 1242 91.621000 2685 3576 1 chr4D.!!$R1 891
5 TraesCS3B01G562700 chr4D 218255096 218256009 913 False 1242.000000 1242 91.621000 2685 3576 1 chr4D.!!$F2 891
6 TraesCS3B01G562700 chr4D 6424440 6425446 1006 False 475.000000 475 75.702000 1426 2438 1 chr4D.!!$F1 1012
7 TraesCS3B01G562700 chr6D 186997113 186998014 901 True 1230.000000 1230 91.731000 2696 3576 1 chr6D.!!$R1 880
8 TraesCS3B01G562700 chr6D 452077630 452078313 683 False 366.000000 366 76.955000 1418 2119 1 chr6D.!!$F2 701
9 TraesCS3B01G562700 chr6D 462405283 462405921 638 False 311.000000 311 76.119000 1418 2074 1 chr6D.!!$F4 656
10 TraesCS3B01G562700 chr4A 111092534 111093444 910 False 1158.000000 1158 90.273000 2699 3576 1 chr4A.!!$F1 877
11 TraesCS3B01G562700 chr4A 605008721 605009505 784 True 987.000000 987 90.076000 2697 3448 1 chr4A.!!$R1 751
12 TraesCS3B01G562700 chr4A 597014700 597015720 1020 False 496.000000 496 76.068000 1412 2438 1 chr4A.!!$F2 1026
13 TraesCS3B01G562700 chrUn 40880181 40881094 913 False 1131.000000 1131 89.651000 2696 3576 1 chrUn.!!$F1 880
14 TraesCS3B01G562700 chr6A 572846307 572847094 787 True 952.000000 952 89.227000 2697 3448 1 chr6A.!!$R1 751
15 TraesCS3B01G562700 chr6A 609157826 609158522 696 False 351.000000 351 76.503000 1418 2132 1 chr6A.!!$F1 714
16 TraesCS3B01G562700 chr4B 11656208 11657214 1006 True 475.000000 475 75.819000 1426 2438 1 chr4B.!!$R1 1012
17 TraesCS3B01G562700 chr5D 491527755 491528729 974 False 523.000000 523 76.730000 1412 2395 1 chr5D.!!$F2 983
18 TraesCS3B01G562700 chr5D 356090445 356091369 924 False 268.000000 268 72.565000 1412 2348 1 chr5D.!!$F1 936
19 TraesCS3B01G562700 chr5A 613700673 613701640 967 False 516.000000 516 76.690000 1419 2395 1 chr5A.!!$F2 976
20 TraesCS3B01G562700 chr5A 457790972 457791896 924 False 268.000000 268 72.565000 1412 2348 1 chr5A.!!$F1 936
21 TraesCS3B01G562700 chr5B 606301626 606302601 975 False 492.000000 492 76.176000 1412 2396 1 chr5B.!!$F1 984
22 TraesCS3B01G562700 chr5B 420981456 420982179 723 True 257.000000 257 73.620000 1664 2393 1 chr5B.!!$R2 729
23 TraesCS3B01G562700 chr6B 704851867 704852629 762 True 374.000000 374 76.280000 1418 2198 1 chr6B.!!$R2 780

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
385 386 0.037160 ATGCTTAACCCCCGAACGTT 59.963 50.0 0.00 0.00 0.0 3.99 F
561 3826 0.110509 TTCAGTCGAGACGTACGTGC 60.111 55.0 28.16 16.24 36.2 5.34 F
791 4058 0.251832 TTTGCTTTTCCCGGGCCATA 60.252 50.0 18.49 0.00 0.0 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2005 5301 0.039180 TGAGCCCGAAGAGGTAGACA 59.961 55.000 0.00 0.0 38.74 3.41 R
2440 5736 1.868251 CGACTCGGCGACTACTTGC 60.868 63.158 4.99 0.0 0.00 4.01 R
2639 5935 1.200716 AGCACGAGCATCAACCAATTG 59.799 47.619 7.77 0.0 45.49 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.381465 CACGATCAATGATTATCGATTCGT 57.619 37.500 11.11 6.70 46.08 3.85
26 27 5.164061 CGATCAATGATTATCGATTCGTGCA 60.164 40.000 1.71 0.00 46.08 4.57
28 29 6.544038 TCAATGATTATCGATTCGTGCAAT 57.456 33.333 1.71 0.00 0.00 3.56
29 30 6.593072 TCAATGATTATCGATTCGTGCAATC 58.407 36.000 1.71 6.31 38.06 2.67
30 31 6.424812 TCAATGATTATCGATTCGTGCAATCT 59.575 34.615 1.71 10.52 39.15 2.40
31 32 5.829233 TGATTATCGATTCGTGCAATCTC 57.171 39.130 1.71 7.87 39.15 2.75
33 34 5.928264 TGATTATCGATTCGTGCAATCTCAT 59.072 36.000 1.71 4.80 39.15 2.90
34 35 6.424812 TGATTATCGATTCGTGCAATCTCATT 59.575 34.615 1.71 0.00 39.15 2.57
35 36 4.722203 ATCGATTCGTGCAATCTCATTC 57.278 40.909 5.89 0.00 39.15 2.67
36 37 3.785486 TCGATTCGTGCAATCTCATTCT 58.215 40.909 5.89 0.00 39.15 2.40
37 38 4.183865 TCGATTCGTGCAATCTCATTCTT 58.816 39.130 5.89 0.00 39.15 2.52
38 39 4.268644 TCGATTCGTGCAATCTCATTCTTC 59.731 41.667 5.89 0.00 39.15 2.87
39 40 4.551603 CGATTCGTGCAATCTCATTCTTCC 60.552 45.833 0.00 0.00 39.15 3.46
40 41 3.616956 TCGTGCAATCTCATTCTTCCT 57.383 42.857 0.00 0.00 0.00 3.36
41 42 4.736126 TCGTGCAATCTCATTCTTCCTA 57.264 40.909 0.00 0.00 0.00 2.94
43 44 4.870426 TCGTGCAATCTCATTCTTCCTAAC 59.130 41.667 0.00 0.00 0.00 2.34
45 46 6.042777 CGTGCAATCTCATTCTTCCTAACTA 58.957 40.000 0.00 0.00 0.00 2.24
48 49 7.334421 GTGCAATCTCATTCTTCCTAACTAACA 59.666 37.037 0.00 0.00 0.00 2.41
49 50 8.049117 TGCAATCTCATTCTTCCTAACTAACAT 58.951 33.333 0.00 0.00 0.00 2.71
51 52 8.834465 CAATCTCATTCTTCCTAACTAACATGG 58.166 37.037 0.00 0.00 0.00 3.66
52 53 7.496346 TCTCATTCTTCCTAACTAACATGGT 57.504 36.000 0.00 0.00 0.00 3.55
55 56 7.685481 TCATTCTTCCTAACTAACATGGTTGA 58.315 34.615 0.00 0.00 0.00 3.18
56 57 8.328758 TCATTCTTCCTAACTAACATGGTTGAT 58.671 33.333 0.00 0.00 0.00 2.57
57 58 8.616076 CATTCTTCCTAACTAACATGGTTGATC 58.384 37.037 0.00 0.00 0.00 2.92
60 61 6.479972 TCCTAACTAACATGGTTGATCGAT 57.520 37.500 0.00 0.00 0.00 3.59
61 62 6.280643 TCCTAACTAACATGGTTGATCGATG 58.719 40.000 0.54 0.00 38.07 3.84
62 63 6.049149 CCTAACTAACATGGTTGATCGATGT 58.951 40.000 0.54 0.00 45.01 3.06
63 64 7.068962 TCCTAACTAACATGGTTGATCGATGTA 59.931 37.037 0.54 0.00 42.94 2.29
64 65 7.709182 CCTAACTAACATGGTTGATCGATGTAA 59.291 37.037 0.54 0.00 42.94 2.41
65 66 9.261180 CTAACTAACATGGTTGATCGATGTAAT 57.739 33.333 0.54 0.00 42.94 1.89
68 69 8.421784 ACTAACATGGTTGATCGATGTAATACT 58.578 33.333 0.54 0.00 42.94 2.12
69 70 7.482654 AACATGGTTGATCGATGTAATACTG 57.517 36.000 0.54 0.00 42.94 2.74
72 73 5.984725 TGGTTGATCGATGTAATACTGGTT 58.015 37.500 0.54 0.00 0.00 3.67
73 74 7.114866 TGGTTGATCGATGTAATACTGGTTA 57.885 36.000 0.54 0.00 0.00 2.85
74 75 7.557724 TGGTTGATCGATGTAATACTGGTTAA 58.442 34.615 0.54 0.00 0.00 2.01
75 76 7.493320 TGGTTGATCGATGTAATACTGGTTAAC 59.507 37.037 0.54 0.00 0.00 2.01
77 78 8.753175 GTTGATCGATGTAATACTGGTTAACTC 58.247 37.037 0.54 0.00 0.00 3.01
78 79 8.002984 TGATCGATGTAATACTGGTTAACTCA 57.997 34.615 0.54 1.27 0.00 3.41
81 82 7.262772 TCGATGTAATACTGGTTAACTCAAGG 58.737 38.462 5.42 0.00 0.00 3.61
82 83 6.018994 CGATGTAATACTGGTTAACTCAAGGC 60.019 42.308 5.42 0.00 0.00 4.35
83 84 6.368779 TGTAATACTGGTTAACTCAAGGCT 57.631 37.500 5.42 0.00 0.00 4.58
85 86 7.228590 TGTAATACTGGTTAACTCAAGGCTTT 58.771 34.615 5.42 0.00 0.00 3.51
86 87 6.575162 AATACTGGTTAACTCAAGGCTTTG 57.425 37.500 5.42 1.35 35.57 2.77
88 89 4.278310 ACTGGTTAACTCAAGGCTTTGTT 58.722 39.130 16.30 16.30 35.73 2.83
89 90 5.442391 ACTGGTTAACTCAAGGCTTTGTTA 58.558 37.500 8.56 14.74 35.73 2.41
90 91 5.889289 ACTGGTTAACTCAAGGCTTTGTTAA 59.111 36.000 21.48 21.48 35.73 2.01
91 92 6.378848 ACTGGTTAACTCAAGGCTTTGTTAAA 59.621 34.615 24.50 15.52 36.87 1.52
92 93 7.069455 ACTGGTTAACTCAAGGCTTTGTTAAAT 59.931 33.333 24.50 14.43 36.87 1.40
94 95 7.068839 TGGTTAACTCAAGGCTTTGTTAAATCA 59.931 33.333 24.50 22.19 36.87 2.57
95 96 7.923878 GGTTAACTCAAGGCTTTGTTAAATCAA 59.076 33.333 24.50 11.26 36.87 2.57
96 97 9.308318 GTTAACTCAAGGCTTTGTTAAATCAAA 57.692 29.630 24.50 10.77 36.87 2.69
104 105 5.121221 CTTTGTTAAATCAAAGTCGGGCT 57.879 39.130 9.37 0.00 45.08 5.19
105 106 6.249035 CTTTGTTAAATCAAAGTCGGGCTA 57.751 37.500 9.37 0.00 45.08 3.93
106 107 5.873179 TTGTTAAATCAAAGTCGGGCTAG 57.127 39.130 0.00 0.00 0.00 3.42
107 108 4.258543 TGTTAAATCAAAGTCGGGCTAGG 58.741 43.478 0.00 0.00 0.00 3.02
111 112 0.245539 TCAAAGTCGGGCTAGGTTCG 59.754 55.000 0.00 0.00 0.00 3.95
112 113 0.245539 CAAAGTCGGGCTAGGTTCGA 59.754 55.000 0.00 0.00 0.00 3.71
113 114 0.531200 AAAGTCGGGCTAGGTTCGAG 59.469 55.000 0.00 0.00 33.41 4.04
116 117 1.031029 GTCGGGCTAGGTTCGAGTCT 61.031 60.000 0.00 0.00 33.41 3.24
117 118 0.747283 TCGGGCTAGGTTCGAGTCTC 60.747 60.000 0.00 0.00 0.00 3.36
118 119 0.748729 CGGGCTAGGTTCGAGTCTCT 60.749 60.000 0.00 0.00 0.00 3.10
119 120 1.476477 GGGCTAGGTTCGAGTCTCTT 58.524 55.000 0.00 0.00 0.00 2.85
120 121 1.406180 GGGCTAGGTTCGAGTCTCTTC 59.594 57.143 0.00 0.00 0.00 2.87
121 122 2.371306 GGCTAGGTTCGAGTCTCTTCT 58.629 52.381 0.00 0.00 0.00 2.85
123 124 3.428316 GGCTAGGTTCGAGTCTCTTCTTG 60.428 52.174 0.00 0.00 0.00 3.02
124 125 3.428316 GCTAGGTTCGAGTCTCTTCTTGG 60.428 52.174 0.00 0.00 0.00 3.61
125 126 1.896465 AGGTTCGAGTCTCTTCTTGGG 59.104 52.381 0.00 0.00 0.00 4.12
126 127 1.619332 GGTTCGAGTCTCTTCTTGGGT 59.381 52.381 0.00 0.00 0.00 4.51
127 128 2.352912 GGTTCGAGTCTCTTCTTGGGTC 60.353 54.545 0.00 0.00 0.00 4.46
128 129 2.287977 TCGAGTCTCTTCTTGGGTCA 57.712 50.000 0.00 0.00 0.00 4.02
129 130 2.163509 TCGAGTCTCTTCTTGGGTCAG 58.836 52.381 0.00 0.00 0.00 3.51
130 131 1.403514 CGAGTCTCTTCTTGGGTCAGC 60.404 57.143 0.00 0.00 0.00 4.26
133 134 1.620819 GTCTCTTCTTGGGTCAGCTGA 59.379 52.381 13.74 13.74 0.00 4.26
136 137 1.980765 TCTTCTTGGGTCAGCTGATGT 59.019 47.619 21.47 0.00 0.00 3.06
137 138 2.027745 TCTTCTTGGGTCAGCTGATGTC 60.028 50.000 21.47 12.74 0.00 3.06
140 141 2.373169 TCTTGGGTCAGCTGATGTCTTT 59.627 45.455 21.47 0.00 0.00 2.52
142 143 2.783135 TGGGTCAGCTGATGTCTTTTC 58.217 47.619 21.47 3.76 0.00 2.29
145 146 3.307339 GGGTCAGCTGATGTCTTTTCTCT 60.307 47.826 21.47 0.00 0.00 3.10
146 147 4.081420 GGGTCAGCTGATGTCTTTTCTCTA 60.081 45.833 21.47 0.00 0.00 2.43
147 148 5.482908 GGTCAGCTGATGTCTTTTCTCTAA 58.517 41.667 21.47 0.00 0.00 2.10
148 149 5.934625 GGTCAGCTGATGTCTTTTCTCTAAA 59.065 40.000 21.47 0.00 0.00 1.85
149 150 6.428159 GGTCAGCTGATGTCTTTTCTCTAAAA 59.572 38.462 21.47 0.00 33.58 1.52
165 166 9.635404 TTTCTCTAAAAGGTGTTAAATCAAGGA 57.365 29.630 0.00 0.00 0.00 3.36
166 167 9.635404 TTCTCTAAAAGGTGTTAAATCAAGGAA 57.365 29.630 0.00 0.00 0.00 3.36
167 168 9.807921 TCTCTAAAAGGTGTTAAATCAAGGAAT 57.192 29.630 0.00 0.00 0.00 3.01
179 180 9.803315 GTTAAATCAAGGAATTCAATAACTCCC 57.197 33.333 7.93 0.00 0.00 4.30
182 183 5.811190 TCAAGGAATTCAATAACTCCCGAA 58.189 37.500 7.93 0.00 0.00 4.30
183 184 5.646360 TCAAGGAATTCAATAACTCCCGAAC 59.354 40.000 7.93 0.00 0.00 3.95
184 185 4.189231 AGGAATTCAATAACTCCCGAACG 58.811 43.478 7.93 0.00 0.00 3.95
185 186 3.937079 GGAATTCAATAACTCCCGAACGT 59.063 43.478 7.93 0.00 0.00 3.99
199 200 1.193650 CGAACGTTCGGATTTTGAGCA 59.806 47.619 36.53 0.00 46.30 4.26
200 201 2.159707 CGAACGTTCGGATTTTGAGCAT 60.160 45.455 36.53 0.00 46.30 3.79
203 204 3.821841 ACGTTCGGATTTTGAGCATTTC 58.178 40.909 0.00 0.00 0.00 2.17
204 205 2.840176 CGTTCGGATTTTGAGCATTTCG 59.160 45.455 0.00 0.00 0.00 3.46
207 208 4.078363 TCGGATTTTGAGCATTTCGTTC 57.922 40.909 0.00 0.00 0.00 3.95
208 209 3.119990 TCGGATTTTGAGCATTTCGTTCC 60.120 43.478 0.00 0.00 0.00 3.62
210 211 3.119990 GGATTTTGAGCATTTCGTTCCGA 60.120 43.478 0.00 0.00 0.00 4.55
212 213 4.497473 TTTTGAGCATTTCGTTCCGAAT 57.503 36.364 0.00 0.00 45.28 3.34
213 214 3.469899 TTGAGCATTTCGTTCCGAATG 57.530 42.857 0.00 0.00 45.28 2.67
215 216 2.159430 TGAGCATTTCGTTCCGAATGTG 59.841 45.455 0.00 4.36 45.28 3.21
216 217 2.151202 AGCATTTCGTTCCGAATGTGT 58.849 42.857 0.00 0.00 45.28 3.72
217 218 2.552315 AGCATTTCGTTCCGAATGTGTT 59.448 40.909 0.00 0.00 45.28 3.32
219 220 4.214545 AGCATTTCGTTCCGAATGTGTTTA 59.785 37.500 0.00 0.00 45.28 2.01
220 221 4.319901 GCATTTCGTTCCGAATGTGTTTAC 59.680 41.667 0.00 0.00 45.28 2.01
221 222 5.444983 CATTTCGTTCCGAATGTGTTTACA 58.555 37.500 0.00 0.00 45.28 2.41
223 224 4.655440 TCGTTCCGAATGTGTTTACATG 57.345 40.909 0.28 0.00 46.54 3.21
224 225 3.433957 TCGTTCCGAATGTGTTTACATGG 59.566 43.478 0.00 0.00 46.54 3.66
225 226 3.498082 GTTCCGAATGTGTTTACATGGC 58.502 45.455 0.00 0.00 46.54 4.40
226 227 2.784347 TCCGAATGTGTTTACATGGCA 58.216 42.857 0.00 0.00 46.54 4.92
227 228 3.149981 TCCGAATGTGTTTACATGGCAA 58.850 40.909 0.00 0.00 46.54 4.52
228 229 3.057876 TCCGAATGTGTTTACATGGCAAC 60.058 43.478 0.00 0.00 46.54 4.17
229 230 3.057596 CCGAATGTGTTTACATGGCAACT 60.058 43.478 9.83 0.00 46.54 3.16
231 232 4.981674 CGAATGTGTTTACATGGCAACTTT 59.018 37.500 9.83 0.00 46.54 2.66
232 233 6.146216 CGAATGTGTTTACATGGCAACTTTA 58.854 36.000 9.83 0.00 46.54 1.85
233 234 6.305399 CGAATGTGTTTACATGGCAACTTTAG 59.695 38.462 9.83 0.00 46.54 1.85
234 235 6.648879 ATGTGTTTACATGGCAACTTTAGT 57.351 33.333 9.83 0.00 45.54 2.24
235 236 6.458232 TGTGTTTACATGGCAACTTTAGTT 57.542 33.333 9.83 0.00 39.12 2.24
237 238 6.095580 TGTGTTTACATGGCAACTTTAGTTCA 59.904 34.615 9.83 0.00 35.83 3.18
238 239 7.145323 GTGTTTACATGGCAACTTTAGTTCAT 58.855 34.615 9.83 0.00 35.83 2.57
239 240 8.293867 GTGTTTACATGGCAACTTTAGTTCATA 58.706 33.333 9.83 0.00 35.83 2.15
240 241 9.019656 TGTTTACATGGCAACTTTAGTTCATAT 57.980 29.630 9.83 0.00 35.83 1.78
241 242 9.289303 GTTTACATGGCAACTTTAGTTCATATG 57.711 33.333 0.00 0.00 35.83 1.78
242 243 6.455360 ACATGGCAACTTTAGTTCATATGG 57.545 37.500 2.13 0.00 35.83 2.74
244 245 5.186256 TGGCAACTTTAGTTCATATGGGA 57.814 39.130 2.13 0.00 35.83 4.37
246 247 5.593909 TGGCAACTTTAGTTCATATGGGATG 59.406 40.000 2.13 0.00 35.83 3.51
247 248 5.010012 GGCAACTTTAGTTCATATGGGATGG 59.990 44.000 2.13 0.00 35.83 3.51
248 249 5.507985 GCAACTTTAGTTCATATGGGATGGC 60.508 44.000 2.13 0.00 35.83 4.40
249 250 5.387113 ACTTTAGTTCATATGGGATGGCA 57.613 39.130 2.13 0.00 0.00 4.92
251 252 5.594317 ACTTTAGTTCATATGGGATGGCAAC 59.406 40.000 2.13 0.00 0.00 4.17
252 253 3.959495 AGTTCATATGGGATGGCAACT 57.041 42.857 2.13 0.51 37.61 3.16
253 254 4.255510 AGTTCATATGGGATGGCAACTT 57.744 40.909 2.13 0.00 37.61 2.66
255 256 5.765510 AGTTCATATGGGATGGCAACTTTA 58.234 37.500 2.13 0.00 37.61 1.85
256 257 6.376248 AGTTCATATGGGATGGCAACTTTAT 58.624 36.000 2.13 0.00 37.61 1.40
257 258 6.840705 AGTTCATATGGGATGGCAACTTTATT 59.159 34.615 2.13 0.00 37.61 1.40
258 259 7.345392 AGTTCATATGGGATGGCAACTTTATTT 59.655 33.333 2.13 0.00 37.61 1.40
259 260 7.288810 TCATATGGGATGGCAACTTTATTTC 57.711 36.000 2.13 0.00 37.61 2.17
260 261 6.838090 TCATATGGGATGGCAACTTTATTTCA 59.162 34.615 2.13 0.00 37.61 2.69
261 262 7.510001 TCATATGGGATGGCAACTTTATTTCAT 59.490 33.333 2.13 0.00 37.61 2.57
262 263 8.805175 CATATGGGATGGCAACTTTATTTCATA 58.195 33.333 0.00 0.00 37.61 2.15
264 265 5.598005 TGGGATGGCAACTTTATTTCATAGG 59.402 40.000 0.00 0.00 37.61 2.57
266 267 5.011023 GGATGGCAACTTTATTTCATAGGGG 59.989 44.000 0.00 0.00 37.61 4.79
269 270 5.598005 TGGCAACTTTATTTCATAGGGGATG 59.402 40.000 0.00 0.00 35.24 3.51
270 271 5.011023 GGCAACTTTATTTCATAGGGGATGG 59.989 44.000 0.00 0.00 36.08 3.51
271 272 5.509670 GCAACTTTATTTCATAGGGGATGGC 60.510 44.000 0.00 0.00 36.08 4.40
272 273 5.402054 ACTTTATTTCATAGGGGATGGCA 57.598 39.130 0.00 0.00 36.08 4.92
273 274 5.776358 ACTTTATTTCATAGGGGATGGCAA 58.224 37.500 0.00 0.00 36.08 4.52
274 275 5.598417 ACTTTATTTCATAGGGGATGGCAAC 59.402 40.000 0.00 0.00 36.08 4.17
276 277 3.756082 TTTCATAGGGGATGGCAACTT 57.244 42.857 0.00 0.00 36.08 2.66
278 279 3.017048 TCATAGGGGATGGCAACTTTG 57.983 47.619 0.00 0.00 36.08 2.77
279 280 2.311542 TCATAGGGGATGGCAACTTTGT 59.688 45.455 0.00 0.00 36.08 2.83
280 281 2.507407 TAGGGGATGGCAACTTTGTC 57.493 50.000 0.00 0.00 37.61 3.18
281 282 0.251787 AGGGGATGGCAACTTTGTCC 60.252 55.000 0.00 0.00 37.61 4.02
282 283 0.251787 GGGGATGGCAACTTTGTCCT 60.252 55.000 0.00 0.00 37.61 3.85
283 284 1.632589 GGGATGGCAACTTTGTCCTT 58.367 50.000 0.00 0.00 37.61 3.36
284 285 1.970640 GGGATGGCAACTTTGTCCTTT 59.029 47.619 0.00 0.00 37.61 3.11
285 286 2.368548 GGGATGGCAACTTTGTCCTTTT 59.631 45.455 0.00 0.00 37.61 2.27
286 287 3.181455 GGGATGGCAACTTTGTCCTTTTT 60.181 43.478 0.00 0.00 37.61 1.94
287 288 4.058124 GGATGGCAACTTTGTCCTTTTTC 58.942 43.478 0.00 0.00 37.61 2.29
288 289 4.442753 GGATGGCAACTTTGTCCTTTTTCA 60.443 41.667 0.00 0.00 37.61 2.69
291 292 5.495640 TGGCAACTTTGTCCTTTTTCATTT 58.504 33.333 0.00 0.00 37.61 2.32
292 293 5.942826 TGGCAACTTTGTCCTTTTTCATTTT 59.057 32.000 0.00 0.00 37.61 1.82
293 294 6.432472 TGGCAACTTTGTCCTTTTTCATTTTT 59.568 30.769 0.00 0.00 37.61 1.94
318 319 7.489574 TTTGTTAGAAAATTGCCATGTTTCC 57.510 32.000 2.96 0.00 32.74 3.13
319 320 5.546526 TGTTAGAAAATTGCCATGTTTCCC 58.453 37.500 2.96 0.00 32.74 3.97
321 322 6.495181 TGTTAGAAAATTGCCATGTTTCCCTA 59.505 34.615 2.96 0.00 32.74 3.53
322 323 7.015682 TGTTAGAAAATTGCCATGTTTCCCTAA 59.984 33.333 2.96 0.00 32.74 2.69
323 324 6.625532 AGAAAATTGCCATGTTTCCCTAAT 57.374 33.333 2.96 0.00 32.74 1.73
324 325 6.643388 AGAAAATTGCCATGTTTCCCTAATC 58.357 36.000 2.96 0.00 32.74 1.75
325 326 6.441604 AGAAAATTGCCATGTTTCCCTAATCT 59.558 34.615 2.96 0.00 32.74 2.40
326 327 5.859205 AATTGCCATGTTTCCCTAATCTC 57.141 39.130 0.00 0.00 0.00 2.75
327 328 4.314522 TTGCCATGTTTCCCTAATCTCA 57.685 40.909 0.00 0.00 0.00 3.27
328 329 3.620488 TGCCATGTTTCCCTAATCTCAC 58.380 45.455 0.00 0.00 0.00 3.51
329 330 2.614057 GCCATGTTTCCCTAATCTCACG 59.386 50.000 0.00 0.00 0.00 4.35
330 331 2.614057 CCATGTTTCCCTAATCTCACGC 59.386 50.000 0.00 0.00 0.00 5.34
331 332 3.270027 CATGTTTCCCTAATCTCACGCA 58.730 45.455 0.00 0.00 0.00 5.24
333 334 3.745799 TGTTTCCCTAATCTCACGCAAA 58.254 40.909 0.00 0.00 0.00 3.68
334 335 3.500680 TGTTTCCCTAATCTCACGCAAAC 59.499 43.478 0.00 0.00 0.00 2.93
336 337 4.811969 TTCCCTAATCTCACGCAAACTA 57.188 40.909 0.00 0.00 0.00 2.24
337 338 4.811969 TCCCTAATCTCACGCAAACTAA 57.188 40.909 0.00 0.00 0.00 2.24
338 339 5.155278 TCCCTAATCTCACGCAAACTAAA 57.845 39.130 0.00 0.00 0.00 1.85
339 340 4.933400 TCCCTAATCTCACGCAAACTAAAC 59.067 41.667 0.00 0.00 0.00 2.01
340 341 4.935808 CCCTAATCTCACGCAAACTAAACT 59.064 41.667 0.00 0.00 0.00 2.66
341 342 5.411669 CCCTAATCTCACGCAAACTAAACTT 59.588 40.000 0.00 0.00 0.00 2.66
342 343 6.307155 CCTAATCTCACGCAAACTAAACTTG 58.693 40.000 0.00 0.00 0.00 3.16
343 344 3.602390 TCTCACGCAAACTAAACTTGC 57.398 42.857 0.00 0.00 44.62 4.01
344 345 2.289547 TCTCACGCAAACTAAACTTGCC 59.710 45.455 2.21 0.00 45.15 4.52
345 346 2.017782 TCACGCAAACTAAACTTGCCA 58.982 42.857 2.21 0.00 45.15 4.92
347 348 2.979813 CACGCAAACTAAACTTGCCATC 59.020 45.455 2.21 0.00 45.15 3.51
349 350 2.030363 CGCAAACTAAACTTGCCATCCA 60.030 45.455 2.21 0.00 45.15 3.41
350 351 3.551863 CGCAAACTAAACTTGCCATCCAA 60.552 43.478 2.21 0.00 45.15 3.53
351 352 4.376146 GCAAACTAAACTTGCCATCCAAA 58.624 39.130 0.00 0.00 42.74 3.28
352 353 4.996758 GCAAACTAAACTTGCCATCCAAAT 59.003 37.500 0.00 0.00 42.74 2.32
353 354 5.120674 GCAAACTAAACTTGCCATCCAAATC 59.879 40.000 0.00 0.00 42.74 2.17
354 355 4.701956 ACTAAACTTGCCATCCAAATCG 57.298 40.909 0.00 0.00 31.94 3.34
355 356 4.079253 ACTAAACTTGCCATCCAAATCGT 58.921 39.130 0.00 0.00 31.94 3.73
356 357 4.522789 ACTAAACTTGCCATCCAAATCGTT 59.477 37.500 0.00 0.00 31.94 3.85
357 358 3.575965 AACTTGCCATCCAAATCGTTC 57.424 42.857 0.00 0.00 31.94 3.95
359 360 0.808125 TTGCCATCCAAATCGTTCGG 59.192 50.000 0.00 0.00 0.00 4.30
360 361 1.029408 TGCCATCCAAATCGTTCGGG 61.029 55.000 0.00 0.00 0.00 5.14
361 362 1.029947 GCCATCCAAATCGTTCGGGT 61.030 55.000 0.00 0.00 0.00 5.28
363 364 1.132262 CCATCCAAATCGTTCGGGTTG 59.868 52.381 0.00 0.00 0.00 3.77
364 365 0.808755 ATCCAAATCGTTCGGGTTGC 59.191 50.000 0.00 0.00 0.00 4.17
365 366 1.211709 CCAAATCGTTCGGGTTGCC 59.788 57.895 0.00 0.00 0.00 4.52
366 367 1.519751 CCAAATCGTTCGGGTTGCCA 61.520 55.000 0.00 0.00 0.00 4.92
367 368 0.525761 CAAATCGTTCGGGTTGCCAT 59.474 50.000 0.00 0.00 0.00 4.40
368 369 0.525761 AAATCGTTCGGGTTGCCATG 59.474 50.000 0.00 0.00 0.00 3.66
369 370 1.933115 AATCGTTCGGGTTGCCATGC 61.933 55.000 0.00 0.00 0.00 4.06
371 372 2.625823 CGTTCGGGTTGCCATGCTT 61.626 57.895 0.00 0.00 0.00 3.91
372 373 1.302383 CGTTCGGGTTGCCATGCTTA 61.302 55.000 0.00 0.00 0.00 3.09
373 374 0.885196 GTTCGGGTTGCCATGCTTAA 59.115 50.000 0.00 0.00 0.00 1.85
377 378 1.897423 GGTTGCCATGCTTAACCCC 59.103 57.895 11.00 0.00 38.29 4.95
378 379 1.613317 GGTTGCCATGCTTAACCCCC 61.613 60.000 11.00 0.00 38.29 5.40
380 381 2.143575 TTGCCATGCTTAACCCCCGA 62.144 55.000 0.00 0.00 0.00 5.14
381 382 1.379309 GCCATGCTTAACCCCCGAA 60.379 57.895 0.00 0.00 0.00 4.30
382 383 1.663379 GCCATGCTTAACCCCCGAAC 61.663 60.000 0.00 0.00 0.00 3.95
383 384 1.373590 CCATGCTTAACCCCCGAACG 61.374 60.000 0.00 0.00 0.00 3.95
385 386 0.037160 ATGCTTAACCCCCGAACGTT 59.963 50.000 0.00 0.00 0.00 3.99
386 387 0.603439 TGCTTAACCCCCGAACGTTC 60.603 55.000 18.47 18.47 0.00 3.95
387 388 1.300971 GCTTAACCCCCGAACGTTCC 61.301 60.000 22.07 5.28 0.00 3.62
388 389 1.005156 TTAACCCCCGAACGTTCCG 60.005 57.895 22.07 15.50 0.00 4.30
389 390 2.447586 TTAACCCCCGAACGTTCCGG 62.448 60.000 23.77 23.77 46.10 5.14
397 398 2.267188 CGAACGTTCCGGAGTTATCA 57.733 50.000 22.07 0.00 0.00 2.15
399 400 3.184541 CGAACGTTCCGGAGTTATCATT 58.815 45.455 22.07 0.00 0.00 2.57
400 401 4.353737 CGAACGTTCCGGAGTTATCATTA 58.646 43.478 22.07 0.00 0.00 1.90
401 402 4.205792 CGAACGTTCCGGAGTTATCATTAC 59.794 45.833 22.07 0.00 0.00 1.89
403 404 3.047796 CGTTCCGGAGTTATCATTACCG 58.952 50.000 3.34 0.00 42.67 4.02
405 406 4.261155 CGTTCCGGAGTTATCATTACCGTA 60.261 45.833 3.34 0.00 41.67 4.02
406 407 5.591099 GTTCCGGAGTTATCATTACCGTAA 58.409 41.667 3.34 0.00 41.67 3.18
407 408 5.850557 TCCGGAGTTATCATTACCGTAAA 57.149 39.130 0.00 0.00 41.67 2.01
408 409 6.409524 TCCGGAGTTATCATTACCGTAAAT 57.590 37.500 0.00 0.00 41.67 1.40
410 411 6.040729 TCCGGAGTTATCATTACCGTAAATCA 59.959 38.462 0.00 0.00 41.67 2.57
411 412 6.702723 CCGGAGTTATCATTACCGTAAATCAA 59.297 38.462 0.00 0.00 41.67 2.57
412 413 7.225145 CCGGAGTTATCATTACCGTAAATCAAA 59.775 37.037 0.00 0.00 41.67 2.69
413 414 8.273557 CGGAGTTATCATTACCGTAAATCAAAG 58.726 37.037 0.00 0.00 38.97 2.77
414 415 9.106070 GGAGTTATCATTACCGTAAATCAAAGT 57.894 33.333 0.00 0.00 0.00 2.66
416 417 8.814235 AGTTATCATTACCGTAAATCAAAGTCG 58.186 33.333 0.00 0.00 0.00 4.18
417 418 6.598753 ATCATTACCGTAAATCAAAGTCGG 57.401 37.500 0.00 0.00 45.53 4.79
418 419 4.871557 TCATTACCGTAAATCAAAGTCGGG 59.128 41.667 6.84 0.00 44.54 5.14
419 420 1.445871 ACCGTAAATCAAAGTCGGGC 58.554 50.000 6.84 0.00 44.54 6.13
427 3667 0.245539 TCAAAGTCGGGCTAGGTTCG 59.754 55.000 0.00 0.00 0.00 3.95
438 3678 2.756207 GGCTAGGTTCGAGTCTCTTCTT 59.244 50.000 0.00 0.00 0.00 2.52
442 3682 1.066787 GGTTCGAGTCTCTTCTTGGGG 60.067 57.143 0.00 0.00 0.00 4.96
445 3685 1.203013 TCGAGTCTCTTCTTGGGGTCA 60.203 52.381 0.00 0.00 0.00 4.02
499 3739 2.543653 GCAAACAATGAACCAGCGAAGT 60.544 45.455 0.00 0.00 0.00 3.01
549 3814 2.194271 GCGTAGGAAATCCTTCAGTCG 58.806 52.381 7.39 6.77 46.09 4.18
554 3819 2.164624 AGGAAATCCTTCAGTCGAGACG 59.835 50.000 0.00 0.00 46.09 4.18
556 3821 3.128242 GGAAATCCTTCAGTCGAGACGTA 59.872 47.826 0.00 0.00 36.20 3.57
558 3823 1.073964 TCCTTCAGTCGAGACGTACG 58.926 55.000 15.01 15.01 36.20 3.67
559 3824 0.795085 CCTTCAGTCGAGACGTACGT 59.205 55.000 23.04 23.04 36.20 3.57
560 3825 1.463693 CCTTCAGTCGAGACGTACGTG 60.464 57.143 28.16 12.02 36.20 4.49
561 3826 0.110509 TTCAGTCGAGACGTACGTGC 60.111 55.000 28.16 16.24 36.20 5.34
562 3827 0.947660 TCAGTCGAGACGTACGTGCT 60.948 55.000 28.16 21.23 36.20 4.40
639 3906 0.949105 CTTCGGTTGAGTTGGGGTCG 60.949 60.000 0.00 0.00 0.00 4.79
687 3954 1.270678 ACAAACTAACCGCCACCTCTC 60.271 52.381 0.00 0.00 0.00 3.20
711 3978 4.278956 CAGACGGCTGGTGGTTAC 57.721 61.111 11.57 0.00 38.51 2.50
755 4022 1.721487 GACGCCATTGATTGTCCCG 59.279 57.895 0.00 0.00 0.00 5.14
789 4056 1.535202 ATTTGCTTTTCCCGGGCCA 60.535 52.632 18.49 0.56 0.00 5.36
790 4057 0.909133 ATTTGCTTTTCCCGGGCCAT 60.909 50.000 18.49 0.00 0.00 4.40
791 4058 0.251832 TTTGCTTTTCCCGGGCCATA 60.252 50.000 18.49 0.00 0.00 2.74
792 4059 0.682855 TTGCTTTTCCCGGGCCATAG 60.683 55.000 18.49 11.41 0.00 2.23
793 4060 2.490148 GCTTTTCCCGGGCCATAGC 61.490 63.158 18.49 17.59 38.76 2.97
794 4061 1.077068 CTTTTCCCGGGCCATAGCA 60.077 57.895 18.49 0.00 42.56 3.49
795 4062 1.077068 TTTTCCCGGGCCATAGCAG 60.077 57.895 18.49 0.00 42.56 4.24
796 4063 3.714487 TTTCCCGGGCCATAGCAGC 62.714 63.158 18.49 0.00 42.56 5.25
802 4069 4.937431 GGCCATAGCAGCCCGTCC 62.937 72.222 0.00 0.00 45.16 4.79
980 4259 1.989864 CGGCGTTTTAATTTCTTGGCC 59.010 47.619 0.00 0.00 36.01 5.36
984 4263 4.494484 GCGTTTTAATTTCTTGGCCATCT 58.506 39.130 6.09 0.00 0.00 2.90
987 4266 5.336372 CGTTTTAATTTCTTGGCCATCTCCA 60.336 40.000 6.09 0.00 0.00 3.86
991 4271 2.124570 CTTGGCCATCTCCACCGG 60.125 66.667 6.09 0.00 35.50 5.28
1152 4432 2.294074 CTCAAGGACAACGGGTTCAAA 58.706 47.619 0.00 0.00 0.00 2.69
1180 4460 2.968330 GATCTTCGACGCCGACGAGG 62.968 65.000 14.01 14.01 44.38 4.63
1302 4582 1.691976 TGGGTCAAGATGAACGTCACT 59.308 47.619 0.00 0.00 34.15 3.41
1317 4597 4.256920 ACGTCACTAAGTACGACTACCAT 58.743 43.478 1.45 0.00 41.55 3.55
1323 4603 0.394762 AGTACGACTACCATGGCGGA 60.395 55.000 13.04 0.00 38.63 5.54
1368 4648 3.181543 GCTTGCAGTTACTTACTTCGTCG 60.182 47.826 0.00 0.00 33.85 5.12
1399 4679 3.321497 GTCTTTCTCGCAACTGATCTGT 58.679 45.455 0.00 0.00 0.00 3.41
2440 5736 1.525995 ACCCTGCAACTTCACCGTG 60.526 57.895 0.00 0.00 0.00 4.94
2485 5781 3.284449 GCGGTCACCACCAACACC 61.284 66.667 0.00 0.00 44.02 4.16
2569 5865 0.319900 TCTTGCTTGTGCTCGTCTCC 60.320 55.000 0.00 0.00 40.48 3.71
2606 5902 9.449719 AAGGAATAAGTGTTTTGTAGATACTGG 57.550 33.333 0.00 0.00 0.00 4.00
2612 5908 3.073209 TGTTTTGTAGATACTGGGTGGCA 59.927 43.478 0.00 0.00 0.00 4.92
2639 5935 9.698617 GTGAAAATGATGTACGTTACCTTAATC 57.301 33.333 0.00 0.00 0.00 1.75
2692 5988 2.664015 ACCATAGTACGGTCTCTTCCC 58.336 52.381 0.00 0.00 27.30 3.97
2789 6086 8.896744 GTTTGTTATAATTAGTACCCTCAACCC 58.103 37.037 0.00 0.00 0.00 4.11
2934 6252 5.291178 TGACATTCATTTCCAAAGCAACAG 58.709 37.500 0.00 0.00 0.00 3.16
2971 6290 3.582208 ACTCTCAAGATTGAAGGCTCTGT 59.418 43.478 0.00 0.00 36.64 3.41
2978 6297 7.394016 TCAAGATTGAAGGCTCTGTTGTATTA 58.606 34.615 0.00 0.00 33.55 0.98
3001 6320 0.244721 GGGATGTGCCTGCAAACTTC 59.755 55.000 0.00 0.00 36.66 3.01
3063 6382 4.862641 ATAATTCCTTGCAGGGTACACT 57.137 40.909 15.41 0.00 35.59 3.55
3251 6587 0.963856 TGACAGTCGTATGGCCGAGT 60.964 55.000 0.00 0.00 40.98 4.18
3402 6738 2.686816 CGGCAAACAGGTTAGCCCG 61.687 63.158 6.19 5.50 44.18 6.13
3473 6812 1.339610 CAAAAACCCGGACATCAGCAA 59.660 47.619 0.73 0.00 0.00 3.91
3474 6813 1.698506 AAAACCCGGACATCAGCAAA 58.301 45.000 0.73 0.00 0.00 3.68
3552 6891 3.935203 AGCTAACATGAAGTCAATCACCG 59.065 43.478 0.00 0.00 30.82 4.94
3562 6901 4.481368 AGTCAATCACCGTATGCCTTTA 57.519 40.909 0.00 0.00 0.00 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.229236 CACGAATCGATAATCATTGATCGTG 58.771 40.000 21.68 21.68 44.18 4.35
2 3 5.164061 TGCACGAATCGATAATCATTGATCG 60.164 40.000 10.55 3.42 44.97 3.69
3 4 6.156932 TGCACGAATCGATAATCATTGATC 57.843 37.500 10.55 0.00 34.65 2.92
4 5 6.544038 TTGCACGAATCGATAATCATTGAT 57.456 33.333 10.55 0.00 36.93 2.57
6 7 6.596703 AGATTGCACGAATCGATAATCATTG 58.403 36.000 21.95 7.37 44.72 2.82
9 10 5.288804 TGAGATTGCACGAATCGATAATCA 58.711 37.500 21.95 10.88 44.72 2.57
10 11 5.829233 TGAGATTGCACGAATCGATAATC 57.171 39.130 10.55 14.70 44.72 1.75
12 13 5.985530 AGAATGAGATTGCACGAATCGATAA 59.014 36.000 10.55 1.48 44.72 1.75
13 14 5.532557 AGAATGAGATTGCACGAATCGATA 58.467 37.500 10.55 0.00 44.72 2.92
14 15 4.375272 AGAATGAGATTGCACGAATCGAT 58.625 39.130 10.55 0.00 44.72 3.59
15 16 3.785486 AGAATGAGATTGCACGAATCGA 58.215 40.909 10.55 0.00 44.72 3.59
16 17 4.512657 GAAGAATGAGATTGCACGAATCG 58.487 43.478 0.00 0.00 44.72 3.34
17 18 4.574013 AGGAAGAATGAGATTGCACGAATC 59.426 41.667 0.00 0.00 40.92 2.52
18 19 4.521146 AGGAAGAATGAGATTGCACGAAT 58.479 39.130 0.00 0.00 0.00 3.34
19 20 3.942829 AGGAAGAATGAGATTGCACGAA 58.057 40.909 0.00 0.00 0.00 3.85
20 21 3.616956 AGGAAGAATGAGATTGCACGA 57.383 42.857 0.00 0.00 0.00 4.35
22 23 7.334421 TGTTAGTTAGGAAGAATGAGATTGCAC 59.666 37.037 0.00 0.00 0.00 4.57
23 24 7.394016 TGTTAGTTAGGAAGAATGAGATTGCA 58.606 34.615 0.00 0.00 0.00 4.08
26 27 8.552296 ACCATGTTAGTTAGGAAGAATGAGATT 58.448 33.333 0.00 0.00 0.00 2.40
28 29 7.496346 ACCATGTTAGTTAGGAAGAATGAGA 57.504 36.000 0.00 0.00 0.00 3.27
29 30 7.824289 TCAACCATGTTAGTTAGGAAGAATGAG 59.176 37.037 0.00 0.00 0.00 2.90
30 31 7.685481 TCAACCATGTTAGTTAGGAAGAATGA 58.315 34.615 0.00 0.00 0.00 2.57
31 32 7.921786 TCAACCATGTTAGTTAGGAAGAATG 57.078 36.000 0.00 0.00 0.00 2.67
33 34 6.816640 CGATCAACCATGTTAGTTAGGAAGAA 59.183 38.462 0.00 0.00 0.00 2.52
34 35 6.153851 TCGATCAACCATGTTAGTTAGGAAGA 59.846 38.462 0.00 0.00 0.00 2.87
35 36 6.338146 TCGATCAACCATGTTAGTTAGGAAG 58.662 40.000 0.00 0.00 0.00 3.46
36 37 6.288941 TCGATCAACCATGTTAGTTAGGAA 57.711 37.500 0.00 0.00 0.00 3.36
37 38 5.925506 TCGATCAACCATGTTAGTTAGGA 57.074 39.130 0.00 0.00 0.00 2.94
38 39 6.049149 ACATCGATCAACCATGTTAGTTAGG 58.951 40.000 0.00 0.00 0.00 2.69
39 40 8.642908 TTACATCGATCAACCATGTTAGTTAG 57.357 34.615 0.00 0.00 32.88 2.34
41 42 9.042008 GTATTACATCGATCAACCATGTTAGTT 57.958 33.333 0.00 0.00 32.88 2.24
43 44 8.703336 CAGTATTACATCGATCAACCATGTTAG 58.297 37.037 0.00 0.00 32.88 2.34
45 46 6.483307 CCAGTATTACATCGATCAACCATGTT 59.517 38.462 0.00 0.00 32.88 2.71
48 49 6.174720 ACCAGTATTACATCGATCAACCAT 57.825 37.500 0.00 0.00 0.00 3.55
49 50 5.607939 ACCAGTATTACATCGATCAACCA 57.392 39.130 0.00 0.00 0.00 3.67
51 52 8.644318 AGTTAACCAGTATTACATCGATCAAC 57.356 34.615 0.88 0.00 0.00 3.18
52 53 8.471609 TGAGTTAACCAGTATTACATCGATCAA 58.528 33.333 0.88 0.00 0.00 2.57
55 56 7.926555 CCTTGAGTTAACCAGTATTACATCGAT 59.073 37.037 0.88 0.00 0.00 3.59
56 57 7.262772 CCTTGAGTTAACCAGTATTACATCGA 58.737 38.462 0.88 0.00 0.00 3.59
57 58 6.018994 GCCTTGAGTTAACCAGTATTACATCG 60.019 42.308 0.88 0.00 0.00 3.84
60 61 6.368779 AGCCTTGAGTTAACCAGTATTACA 57.631 37.500 0.88 0.00 0.00 2.41
61 62 7.174426 ACAAAGCCTTGAGTTAACCAGTATTAC 59.826 37.037 1.09 0.00 36.33 1.89
62 63 7.228590 ACAAAGCCTTGAGTTAACCAGTATTA 58.771 34.615 1.09 0.00 36.33 0.98
63 64 6.068670 ACAAAGCCTTGAGTTAACCAGTATT 58.931 36.000 1.09 0.00 36.33 1.89
64 65 5.631119 ACAAAGCCTTGAGTTAACCAGTAT 58.369 37.500 1.09 0.00 36.33 2.12
65 66 5.043737 ACAAAGCCTTGAGTTAACCAGTA 57.956 39.130 1.09 0.00 36.33 2.74
66 67 3.898482 ACAAAGCCTTGAGTTAACCAGT 58.102 40.909 1.09 0.00 36.33 4.00
68 69 6.777213 TTTAACAAAGCCTTGAGTTAACCA 57.223 33.333 12.40 0.00 36.50 3.67
69 70 7.430441 TGATTTAACAAAGCCTTGAGTTAACC 58.570 34.615 12.40 9.40 36.50 2.85
83 84 5.182380 CCTAGCCCGACTTTGATTTAACAAA 59.818 40.000 0.00 0.00 37.98 2.83
85 86 4.258543 CCTAGCCCGACTTTGATTTAACA 58.741 43.478 0.00 0.00 0.00 2.41
86 87 4.259356 ACCTAGCCCGACTTTGATTTAAC 58.741 43.478 0.00 0.00 0.00 2.01
88 89 4.510571 GAACCTAGCCCGACTTTGATTTA 58.489 43.478 0.00 0.00 0.00 1.40
89 90 3.344515 GAACCTAGCCCGACTTTGATTT 58.655 45.455 0.00 0.00 0.00 2.17
90 91 2.677037 CGAACCTAGCCCGACTTTGATT 60.677 50.000 0.00 0.00 0.00 2.57
91 92 1.134788 CGAACCTAGCCCGACTTTGAT 60.135 52.381 0.00 0.00 0.00 2.57
92 93 0.245539 CGAACCTAGCCCGACTTTGA 59.754 55.000 0.00 0.00 0.00 2.69
94 95 0.531200 CTCGAACCTAGCCCGACTTT 59.469 55.000 0.00 0.00 0.00 2.66
95 96 0.611340 ACTCGAACCTAGCCCGACTT 60.611 55.000 0.00 0.00 0.00 3.01
96 97 1.001145 ACTCGAACCTAGCCCGACT 60.001 57.895 0.00 0.00 0.00 4.18
97 98 1.031029 AGACTCGAACCTAGCCCGAC 61.031 60.000 0.00 0.00 0.00 4.79
98 99 0.747283 GAGACTCGAACCTAGCCCGA 60.747 60.000 0.00 0.00 0.00 5.14
99 100 0.748729 AGAGACTCGAACCTAGCCCG 60.749 60.000 0.00 0.00 0.00 6.13
102 103 3.428316 CCAAGAAGAGACTCGAACCTAGC 60.428 52.174 0.00 0.00 0.00 3.42
103 104 3.129638 CCCAAGAAGAGACTCGAACCTAG 59.870 52.174 0.00 0.00 0.00 3.02
104 105 3.090037 CCCAAGAAGAGACTCGAACCTA 58.910 50.000 0.00 0.00 0.00 3.08
105 106 1.896465 CCCAAGAAGAGACTCGAACCT 59.104 52.381 0.00 0.00 0.00 3.50
106 107 1.619332 ACCCAAGAAGAGACTCGAACC 59.381 52.381 0.00 0.00 0.00 3.62
107 108 2.296471 TGACCCAAGAAGAGACTCGAAC 59.704 50.000 0.00 0.00 0.00 3.95
111 112 1.899142 AGCTGACCCAAGAAGAGACTC 59.101 52.381 0.00 0.00 0.00 3.36
112 113 1.622811 CAGCTGACCCAAGAAGAGACT 59.377 52.381 8.42 0.00 0.00 3.24
113 114 1.620819 TCAGCTGACCCAAGAAGAGAC 59.379 52.381 13.74 0.00 0.00 3.36
116 117 1.980765 ACATCAGCTGACCCAAGAAGA 59.019 47.619 20.97 0.00 0.00 2.87
117 118 2.027377 AGACATCAGCTGACCCAAGAAG 60.027 50.000 20.97 4.31 0.00 2.85
118 119 1.980765 AGACATCAGCTGACCCAAGAA 59.019 47.619 20.97 0.00 0.00 2.52
119 120 1.649321 AGACATCAGCTGACCCAAGA 58.351 50.000 20.97 0.00 0.00 3.02
120 121 2.486472 AAGACATCAGCTGACCCAAG 57.514 50.000 20.97 9.32 0.00 3.61
121 122 2.957402 AAAGACATCAGCTGACCCAA 57.043 45.000 20.97 0.00 0.00 4.12
123 124 3.006247 GAGAAAAGACATCAGCTGACCC 58.994 50.000 20.97 11.03 0.00 4.46
124 125 3.936564 AGAGAAAAGACATCAGCTGACC 58.063 45.455 20.97 11.41 0.00 4.02
125 126 7.426929 TTTTAGAGAAAAGACATCAGCTGAC 57.573 36.000 20.97 6.64 30.89 3.51
140 141 9.635404 TTCCTTGATTTAACACCTTTTAGAGAA 57.365 29.630 0.00 0.00 0.00 2.87
153 154 9.803315 GGGAGTTATTGAATTCCTTGATTTAAC 57.197 33.333 2.27 1.67 40.49 2.01
155 156 8.050325 TCGGGAGTTATTGAATTCCTTGATTTA 58.950 33.333 2.27 0.00 40.49 1.40
156 157 6.889722 TCGGGAGTTATTGAATTCCTTGATTT 59.110 34.615 2.27 0.00 40.49 2.17
157 158 6.423182 TCGGGAGTTATTGAATTCCTTGATT 58.577 36.000 2.27 0.00 40.49 2.57
158 159 6.001449 TCGGGAGTTATTGAATTCCTTGAT 57.999 37.500 2.27 0.00 40.49 2.57
159 160 5.429681 TCGGGAGTTATTGAATTCCTTGA 57.570 39.130 2.27 0.00 40.49 3.02
160 161 5.447279 CGTTCGGGAGTTATTGAATTCCTTG 60.447 44.000 2.27 0.00 40.49 3.61
161 162 4.634443 CGTTCGGGAGTTATTGAATTCCTT 59.366 41.667 2.27 0.00 40.49 3.36
163 164 3.937079 ACGTTCGGGAGTTATTGAATTCC 59.063 43.478 2.27 0.00 40.04 3.01
165 166 4.092383 CGAACGTTCGGGAGTTATTGAATT 59.908 41.667 36.53 0.00 46.30 2.17
166 167 3.615496 CGAACGTTCGGGAGTTATTGAAT 59.385 43.478 36.53 0.00 46.30 2.57
167 168 2.988493 CGAACGTTCGGGAGTTATTGAA 59.012 45.455 36.53 0.00 46.30 2.69
168 169 2.598589 CGAACGTTCGGGAGTTATTGA 58.401 47.619 36.53 0.00 46.30 2.57
182 183 3.666902 CGAAATGCTCAAAATCCGAACGT 60.667 43.478 0.00 0.00 0.00 3.99
183 184 2.840176 CGAAATGCTCAAAATCCGAACG 59.160 45.455 0.00 0.00 0.00 3.95
184 185 3.821841 ACGAAATGCTCAAAATCCGAAC 58.178 40.909 0.00 0.00 0.00 3.95
185 186 4.472286 GAACGAAATGCTCAAAATCCGAA 58.528 39.130 0.00 0.00 0.00 4.30
204 205 3.057876 TGCCATGTAAACACATTCGGAAC 60.058 43.478 0.00 0.00 0.00 3.62
207 208 3.057596 AGTTGCCATGTAAACACATTCGG 60.058 43.478 9.62 0.00 0.00 4.30
208 209 4.159377 AGTTGCCATGTAAACACATTCG 57.841 40.909 9.62 0.00 0.00 3.34
210 211 7.049799 ACTAAAGTTGCCATGTAAACACATT 57.950 32.000 9.62 5.25 0.00 2.71
212 213 6.095580 TGAACTAAAGTTGCCATGTAAACACA 59.904 34.615 0.00 0.00 38.56 3.72
213 214 6.500041 TGAACTAAAGTTGCCATGTAAACAC 58.500 36.000 0.00 0.00 38.56 3.32
215 216 9.289303 CATATGAACTAAAGTTGCCATGTAAAC 57.711 33.333 0.00 0.00 38.56 2.01
216 217 8.465999 CCATATGAACTAAAGTTGCCATGTAAA 58.534 33.333 3.65 0.00 38.56 2.01
217 218 7.068103 CCCATATGAACTAAAGTTGCCATGTAA 59.932 37.037 3.65 0.00 38.56 2.41
219 220 5.360714 CCCATATGAACTAAAGTTGCCATGT 59.639 40.000 3.65 0.00 38.56 3.21
220 221 5.593909 TCCCATATGAACTAAAGTTGCCATG 59.406 40.000 3.65 1.17 38.56 3.66
221 222 5.765510 TCCCATATGAACTAAAGTTGCCAT 58.234 37.500 3.65 1.70 38.56 4.40
222 223 5.186256 TCCCATATGAACTAAAGTTGCCA 57.814 39.130 3.65 0.00 38.56 4.92
223 224 5.010012 CCATCCCATATGAACTAAAGTTGCC 59.990 44.000 3.65 0.00 38.56 4.52
224 225 5.507985 GCCATCCCATATGAACTAAAGTTGC 60.508 44.000 3.65 0.00 38.56 4.17
225 226 5.593909 TGCCATCCCATATGAACTAAAGTTG 59.406 40.000 3.65 0.00 38.56 3.16
226 227 5.765510 TGCCATCCCATATGAACTAAAGTT 58.234 37.500 3.65 0.00 41.64 2.66
227 228 5.387113 TGCCATCCCATATGAACTAAAGT 57.613 39.130 3.65 0.00 0.00 2.66
228 229 5.829924 AGTTGCCATCCCATATGAACTAAAG 59.170 40.000 3.65 0.00 0.00 1.85
229 230 5.765510 AGTTGCCATCCCATATGAACTAAA 58.234 37.500 3.65 0.00 0.00 1.85
231 232 5.387113 AAGTTGCCATCCCATATGAACTA 57.613 39.130 3.65 0.00 0.00 2.24
232 233 3.959495 AGTTGCCATCCCATATGAACT 57.041 42.857 3.65 1.07 0.00 3.01
233 234 6.655078 ATAAAGTTGCCATCCCATATGAAC 57.345 37.500 3.65 0.00 0.00 3.18
234 235 7.344093 TGAAATAAAGTTGCCATCCCATATGAA 59.656 33.333 3.65 0.00 0.00 2.57
235 236 6.838090 TGAAATAAAGTTGCCATCCCATATGA 59.162 34.615 3.65 0.00 0.00 2.15
237 238 7.860649 ATGAAATAAAGTTGCCATCCCATAT 57.139 32.000 0.00 0.00 0.00 1.78
238 239 7.451255 CCTATGAAATAAAGTTGCCATCCCATA 59.549 37.037 0.00 0.00 0.00 2.74
239 240 6.268387 CCTATGAAATAAAGTTGCCATCCCAT 59.732 38.462 0.00 0.00 0.00 4.00
240 241 5.598005 CCTATGAAATAAAGTTGCCATCCCA 59.402 40.000 0.00 0.00 0.00 4.37
241 242 5.011023 CCCTATGAAATAAAGTTGCCATCCC 59.989 44.000 0.00 0.00 0.00 3.85
242 243 5.011023 CCCCTATGAAATAAAGTTGCCATCC 59.989 44.000 0.00 0.00 0.00 3.51
244 245 5.776358 TCCCCTATGAAATAAAGTTGCCAT 58.224 37.500 0.00 0.00 0.00 4.40
246 247 5.011023 CCATCCCCTATGAAATAAAGTTGCC 59.989 44.000 0.00 0.00 37.86 4.52
247 248 5.509670 GCCATCCCCTATGAAATAAAGTTGC 60.510 44.000 0.00 0.00 37.86 4.17
248 249 5.598005 TGCCATCCCCTATGAAATAAAGTTG 59.402 40.000 0.00 0.00 37.86 3.16
249 250 5.776358 TGCCATCCCCTATGAAATAAAGTT 58.224 37.500 0.00 0.00 37.86 2.66
251 252 5.835280 AGTTGCCATCCCCTATGAAATAAAG 59.165 40.000 0.00 0.00 37.86 1.85
252 253 5.776358 AGTTGCCATCCCCTATGAAATAAA 58.224 37.500 0.00 0.00 37.86 1.40
253 254 5.402054 AGTTGCCATCCCCTATGAAATAA 57.598 39.130 0.00 0.00 37.86 1.40
255 256 3.979501 AGTTGCCATCCCCTATGAAAT 57.020 42.857 0.00 0.00 37.86 2.17
256 257 3.756082 AAGTTGCCATCCCCTATGAAA 57.244 42.857 0.00 0.00 37.86 2.69
257 258 3.245586 ACAAAGTTGCCATCCCCTATGAA 60.246 43.478 0.00 0.00 37.86 2.57
258 259 2.311542 ACAAAGTTGCCATCCCCTATGA 59.688 45.455 0.00 0.00 37.86 2.15
259 260 2.689983 GACAAAGTTGCCATCCCCTATG 59.310 50.000 0.00 0.00 35.15 2.23
260 261 2.358195 GGACAAAGTTGCCATCCCCTAT 60.358 50.000 0.00 0.00 0.00 2.57
261 262 1.005450 GGACAAAGTTGCCATCCCCTA 59.995 52.381 0.00 0.00 0.00 3.53
262 263 0.251787 GGACAAAGTTGCCATCCCCT 60.252 55.000 0.00 0.00 0.00 4.79
264 265 1.632589 AAGGACAAAGTTGCCATCCC 58.367 50.000 7.09 0.00 0.00 3.85
266 267 4.692228 TGAAAAAGGACAAAGTTGCCATC 58.308 39.130 7.09 2.38 0.00 3.51
269 270 6.435430 AAAATGAAAAAGGACAAAGTTGCC 57.565 33.333 0.00 0.00 0.00 4.52
292 293 8.401709 GGAAACATGGCAATTTTCTAACAAAAA 58.598 29.630 18.32 0.00 32.99 1.94
293 294 7.012799 GGGAAACATGGCAATTTTCTAACAAAA 59.987 33.333 18.32 0.00 31.21 2.44
294 295 6.484977 GGGAAACATGGCAATTTTCTAACAAA 59.515 34.615 18.32 0.00 31.21 2.83
296 297 5.306678 AGGGAAACATGGCAATTTTCTAACA 59.693 36.000 18.32 0.00 31.21 2.41
297 298 5.793817 AGGGAAACATGGCAATTTTCTAAC 58.206 37.500 18.32 11.83 31.21 2.34
298 299 7.546250 TTAGGGAAACATGGCAATTTTCTAA 57.454 32.000 18.32 15.72 31.21 2.10
299 300 7.619302 AGATTAGGGAAACATGGCAATTTTCTA 59.381 33.333 18.32 12.32 31.21 2.10
301 302 6.643388 AGATTAGGGAAACATGGCAATTTTC 58.357 36.000 13.20 13.20 0.00 2.29
302 303 6.213195 TGAGATTAGGGAAACATGGCAATTTT 59.787 34.615 0.00 0.00 0.00 1.82
303 304 5.721000 TGAGATTAGGGAAACATGGCAATTT 59.279 36.000 0.00 0.00 0.00 1.82
304 305 5.127682 GTGAGATTAGGGAAACATGGCAATT 59.872 40.000 0.00 0.00 0.00 2.32
305 306 4.646492 GTGAGATTAGGGAAACATGGCAAT 59.354 41.667 0.00 0.00 0.00 3.56
306 307 4.016444 GTGAGATTAGGGAAACATGGCAA 58.984 43.478 0.00 0.00 0.00 4.52
307 308 3.620488 GTGAGATTAGGGAAACATGGCA 58.380 45.455 0.00 0.00 0.00 4.92
308 309 2.614057 CGTGAGATTAGGGAAACATGGC 59.386 50.000 0.00 0.00 0.00 4.40
310 311 3.270027 TGCGTGAGATTAGGGAAACATG 58.730 45.455 0.00 0.00 0.00 3.21
311 312 3.627395 TGCGTGAGATTAGGGAAACAT 57.373 42.857 0.00 0.00 0.00 2.71
312 313 3.410631 TTGCGTGAGATTAGGGAAACA 57.589 42.857 0.00 0.00 0.00 2.83
313 314 3.751698 AGTTTGCGTGAGATTAGGGAAAC 59.248 43.478 6.39 6.39 42.90 2.78
316 317 4.811969 TTAGTTTGCGTGAGATTAGGGA 57.188 40.909 0.00 0.00 0.00 4.20
317 318 4.935808 AGTTTAGTTTGCGTGAGATTAGGG 59.064 41.667 0.00 0.00 0.00 3.53
318 319 6.307155 CAAGTTTAGTTTGCGTGAGATTAGG 58.693 40.000 0.00 0.00 0.00 2.69
319 320 5.790495 GCAAGTTTAGTTTGCGTGAGATTAG 59.210 40.000 0.00 0.00 41.16 1.73
321 322 4.537015 GCAAGTTTAGTTTGCGTGAGATT 58.463 39.130 0.00 0.00 41.16 2.40
322 323 4.147219 GCAAGTTTAGTTTGCGTGAGAT 57.853 40.909 0.00 0.00 41.16 2.75
323 324 3.602390 GCAAGTTTAGTTTGCGTGAGA 57.398 42.857 0.00 0.00 41.16 3.27
330 331 5.345741 CGATTTGGATGGCAAGTTTAGTTTG 59.654 40.000 0.00 0.00 0.00 2.93
331 332 5.010617 ACGATTTGGATGGCAAGTTTAGTTT 59.989 36.000 0.00 0.00 0.00 2.66
333 334 4.079253 ACGATTTGGATGGCAAGTTTAGT 58.921 39.130 0.00 0.00 0.00 2.24
334 335 4.701956 ACGATTTGGATGGCAAGTTTAG 57.298 40.909 0.00 0.00 0.00 1.85
336 337 3.611530 CGAACGATTTGGATGGCAAGTTT 60.612 43.478 0.00 0.00 0.00 2.66
337 338 2.095263 CGAACGATTTGGATGGCAAGTT 60.095 45.455 0.00 0.00 0.00 2.66
338 339 1.468520 CGAACGATTTGGATGGCAAGT 59.531 47.619 0.00 0.00 0.00 3.16
339 340 1.202177 CCGAACGATTTGGATGGCAAG 60.202 52.381 0.00 0.00 36.18 4.01
340 341 0.808125 CCGAACGATTTGGATGGCAA 59.192 50.000 0.00 0.00 36.18 4.52
341 342 1.029408 CCCGAACGATTTGGATGGCA 61.029 55.000 0.00 0.00 36.18 4.92
342 343 1.029947 ACCCGAACGATTTGGATGGC 61.030 55.000 0.00 0.00 36.18 4.40
343 344 1.132262 CAACCCGAACGATTTGGATGG 59.868 52.381 0.00 0.00 36.18 3.51
344 345 1.467374 GCAACCCGAACGATTTGGATG 60.467 52.381 0.00 0.00 36.18 3.51
345 346 0.808755 GCAACCCGAACGATTTGGAT 59.191 50.000 0.00 0.00 36.18 3.41
347 348 1.211709 GGCAACCCGAACGATTTGG 59.788 57.895 0.00 0.00 0.00 3.28
349 350 0.525761 CATGGCAACCCGAACGATTT 59.474 50.000 0.00 0.00 0.00 2.17
350 351 1.933115 GCATGGCAACCCGAACGATT 61.933 55.000 0.00 0.00 0.00 3.34
351 352 2.406616 GCATGGCAACCCGAACGAT 61.407 57.895 0.00 0.00 0.00 3.73
352 353 3.053291 GCATGGCAACCCGAACGA 61.053 61.111 0.00 0.00 0.00 3.85
353 354 1.302383 TAAGCATGGCAACCCGAACG 61.302 55.000 0.00 0.00 0.00 3.95
354 355 0.885196 TTAAGCATGGCAACCCGAAC 59.115 50.000 0.00 0.00 0.00 3.95
355 356 0.885196 GTTAAGCATGGCAACCCGAA 59.115 50.000 0.00 0.00 0.00 4.30
356 357 0.963355 GGTTAAGCATGGCAACCCGA 60.963 55.000 0.00 0.00 36.51 5.14
357 358 1.510844 GGTTAAGCATGGCAACCCG 59.489 57.895 0.00 0.00 36.51 5.28
359 360 1.613317 GGGGGTTAAGCATGGCAACC 61.613 60.000 7.03 0.00 40.86 3.77
360 361 1.897423 GGGGGTTAAGCATGGCAAC 59.103 57.895 7.03 0.00 0.00 4.17
361 362 1.680651 CGGGGGTTAAGCATGGCAA 60.681 57.895 7.03 0.00 0.00 4.52
363 364 1.379309 TTCGGGGGTTAAGCATGGC 60.379 57.895 7.03 0.00 0.00 4.40
364 365 1.373590 CGTTCGGGGGTTAAGCATGG 61.374 60.000 7.03 0.00 0.00 3.66
365 366 0.675522 ACGTTCGGGGGTTAAGCATG 60.676 55.000 7.03 0.00 0.00 4.06
366 367 0.037160 AACGTTCGGGGGTTAAGCAT 59.963 50.000 7.03 0.00 0.00 3.79
367 368 0.603439 GAACGTTCGGGGGTTAAGCA 60.603 55.000 13.36 0.00 0.00 3.91
368 369 1.300971 GGAACGTTCGGGGGTTAAGC 61.301 60.000 21.34 0.00 0.00 3.09
369 370 2.845019 GGAACGTTCGGGGGTTAAG 58.155 57.895 21.34 0.00 0.00 1.85
383 384 4.050852 ACGGTAATGATAACTCCGGAAC 57.949 45.455 5.23 0.00 44.54 3.62
385 386 5.850557 TTTACGGTAATGATAACTCCGGA 57.149 39.130 2.93 2.93 44.54 5.14
386 387 6.218019 TGATTTACGGTAATGATAACTCCGG 58.782 40.000 0.73 0.00 44.54 5.14
387 388 7.703298 TTGATTTACGGTAATGATAACTCCG 57.297 36.000 0.73 0.00 45.53 4.63
388 389 9.106070 ACTTTGATTTACGGTAATGATAACTCC 57.894 33.333 0.73 0.00 0.00 3.85
390 391 8.814235 CGACTTTGATTTACGGTAATGATAACT 58.186 33.333 0.73 0.00 0.00 2.24
392 393 7.225145 CCCGACTTTGATTTACGGTAATGATAA 59.775 37.037 0.73 0.00 41.67 1.75
393 394 6.702723 CCCGACTTTGATTTACGGTAATGATA 59.297 38.462 0.73 0.00 41.67 2.15
394 395 5.526111 CCCGACTTTGATTTACGGTAATGAT 59.474 40.000 0.73 0.00 41.67 2.45
395 396 4.871557 CCCGACTTTGATTTACGGTAATGA 59.128 41.667 0.73 0.00 41.67 2.57
396 397 4.495184 GCCCGACTTTGATTTACGGTAATG 60.495 45.833 0.73 0.00 41.67 1.90
397 398 3.624410 GCCCGACTTTGATTTACGGTAAT 59.376 43.478 0.73 0.00 41.67 1.89
399 400 2.234414 AGCCCGACTTTGATTTACGGTA 59.766 45.455 0.00 0.00 41.67 4.02
400 401 1.002773 AGCCCGACTTTGATTTACGGT 59.997 47.619 0.00 0.00 41.67 4.83
401 402 1.734163 AGCCCGACTTTGATTTACGG 58.266 50.000 0.00 0.00 42.67 4.02
403 404 3.870274 ACCTAGCCCGACTTTGATTTAC 58.130 45.455 0.00 0.00 0.00 2.01
405 406 3.344515 GAACCTAGCCCGACTTTGATTT 58.655 45.455 0.00 0.00 0.00 2.17
406 407 2.677037 CGAACCTAGCCCGACTTTGATT 60.677 50.000 0.00 0.00 0.00 2.57
407 408 1.134788 CGAACCTAGCCCGACTTTGAT 60.135 52.381 0.00 0.00 0.00 2.57
408 409 0.245539 CGAACCTAGCCCGACTTTGA 59.754 55.000 0.00 0.00 0.00 2.69
410 411 0.531200 CTCGAACCTAGCCCGACTTT 59.469 55.000 0.00 0.00 0.00 2.66
411 412 0.611340 ACTCGAACCTAGCCCGACTT 60.611 55.000 0.00 0.00 0.00 3.01
412 413 1.001145 ACTCGAACCTAGCCCGACT 60.001 57.895 0.00 0.00 0.00 4.18
413 414 1.031029 AGACTCGAACCTAGCCCGAC 61.031 60.000 0.00 0.00 0.00 4.79
414 415 0.747283 GAGACTCGAACCTAGCCCGA 60.747 60.000 0.00 0.00 0.00 5.14
416 417 1.406180 GAAGAGACTCGAACCTAGCCC 59.594 57.143 0.00 0.00 0.00 5.19
417 418 2.371306 AGAAGAGACTCGAACCTAGCC 58.629 52.381 0.00 0.00 0.00 3.93
418 419 3.428316 CCAAGAAGAGACTCGAACCTAGC 60.428 52.174 0.00 0.00 0.00 3.42
419 420 3.129638 CCCAAGAAGAGACTCGAACCTAG 59.870 52.174 0.00 0.00 0.00 3.02
427 3667 1.066502 GCTGACCCCAAGAAGAGACTC 60.067 57.143 0.00 0.00 0.00 3.36
438 3678 1.488705 AAAGACATCGGCTGACCCCA 61.489 55.000 0.00 0.00 0.00 4.96
442 3682 2.966050 AGAGAAAAGACATCGGCTGAC 58.034 47.619 0.00 0.00 0.00 3.51
468 3708 4.026062 GGTTCATTGTTTGCTTCGGTTTTC 60.026 41.667 0.00 0.00 0.00 2.29
499 3739 2.028112 GCTCGACCAGCCCATATTCATA 60.028 50.000 0.00 0.00 43.17 2.15
549 3814 1.918609 GATGGAAAGCACGTACGTCTC 59.081 52.381 19.94 13.31 0.00 3.36
554 3819 1.654105 CACGAGATGGAAAGCACGTAC 59.346 52.381 0.00 0.00 32.89 3.67
556 3821 0.033504 ACACGAGATGGAAAGCACGT 59.966 50.000 0.00 0.00 34.40 4.49
558 3823 2.143122 TCAACACGAGATGGAAAGCAC 58.857 47.619 0.00 0.00 0.00 4.40
559 3824 2.416747 CTCAACACGAGATGGAAAGCA 58.583 47.619 0.00 0.00 45.45 3.91
560 3825 1.129437 GCTCAACACGAGATGGAAAGC 59.871 52.381 0.00 0.00 45.45 3.51
561 3826 1.391485 CGCTCAACACGAGATGGAAAG 59.609 52.381 0.00 0.00 45.45 2.62
562 3827 1.000394 TCGCTCAACACGAGATGGAAA 60.000 47.619 0.00 0.00 45.45 3.13
624 3891 1.226030 CGAACGACCCCAACTCAACC 61.226 60.000 0.00 0.00 0.00 3.77
639 3906 0.668401 AATCGGACGTGGGAACGAAC 60.668 55.000 5.12 0.00 38.94 3.95
672 3939 2.901042 GGGAGAGGTGGCGGTTAG 59.099 66.667 0.00 0.00 0.00 2.34
768 4035 1.596408 CCCGGGAAAAGCAAATGGG 59.404 57.895 18.48 0.00 0.00 4.00
826 4093 2.577449 ACAACCGCAACTTTTTGGAG 57.423 45.000 0.00 0.00 32.81 3.86
966 4245 4.466015 GGTGGAGATGGCCAAGAAATTAAA 59.534 41.667 10.96 0.00 40.20 1.52
967 4246 4.023291 GGTGGAGATGGCCAAGAAATTAA 58.977 43.478 10.96 0.00 40.20 1.40
968 4247 3.631250 GGTGGAGATGGCCAAGAAATTA 58.369 45.455 10.96 0.00 40.20 1.40
969 4248 2.460669 GGTGGAGATGGCCAAGAAATT 58.539 47.619 10.96 0.00 40.20 1.82
970 4249 1.683011 CGGTGGAGATGGCCAAGAAAT 60.683 52.381 10.96 0.00 40.20 2.17
980 4259 2.503061 CTCTGCCCGGTGGAGATG 59.497 66.667 13.09 5.85 0.00 2.90
984 4263 3.329889 ATTGCTCTGCCCGGTGGA 61.330 61.111 0.00 0.00 0.00 4.02
991 4271 4.487412 GCACGCCATTGCTCTGCC 62.487 66.667 0.00 0.00 39.59 4.85
1127 4407 2.328099 CCGTTGTCCTTGAGCAGCC 61.328 63.158 0.00 0.00 0.00 4.85
1152 4432 2.338500 GCGTCGAAGATCTTCACCTTT 58.662 47.619 29.93 0.00 40.67 3.11
1272 4552 0.322456 TCTTGACCCATTCCTTGGCG 60.322 55.000 0.00 0.00 44.97 5.69
1302 4582 1.677576 CCGCCATGGTAGTCGTACTTA 59.322 52.381 14.67 0.00 0.00 2.24
1317 4597 0.396435 ACTTGATGTTGACTCCGCCA 59.604 50.000 0.00 0.00 0.00 5.69
1323 4603 2.058798 CGCACGTACTTGATGTTGACT 58.941 47.619 3.09 0.00 0.00 3.41
1368 4648 2.478894 TGCGAGAAAGACGGATGAAAAC 59.521 45.455 0.00 0.00 0.00 2.43
1399 4679 4.445453 CCACGAATCTGATGGATCAAGAA 58.555 43.478 0.00 0.00 36.18 2.52
1651 4947 1.675641 GCCGCTGTGGTTGAGGAAT 60.676 57.895 9.31 0.00 41.21 3.01
2005 5301 0.039180 TGAGCCCGAAGAGGTAGACA 59.961 55.000 0.00 0.00 38.74 3.41
2440 5736 1.868251 CGACTCGGCGACTACTTGC 60.868 63.158 4.99 0.00 0.00 4.01
2485 5781 3.900892 ATAGACTCGGCGGCGGTG 61.901 66.667 31.73 24.73 0.00 4.94
2569 5865 3.003689 CACTTATTCCTTGCCCTTATGCG 59.996 47.826 0.00 0.00 0.00 4.73
2605 5901 1.895131 ACATCATTTTCACTGCCACCC 59.105 47.619 0.00 0.00 0.00 4.61
2606 5902 3.426159 CGTACATCATTTTCACTGCCACC 60.426 47.826 0.00 0.00 0.00 4.61
2612 5908 8.836268 TTAAGGTAACGTACATCATTTTCACT 57.164 30.769 0.00 0.00 46.39 3.41
2639 5935 1.200716 AGCACGAGCATCAACCAATTG 59.799 47.619 7.77 0.00 45.49 2.32
2682 5978 5.997384 TTTACTAGTGAAGGGAAGAGACC 57.003 43.478 5.39 0.00 0.00 3.85
2683 5979 6.814146 CACATTTACTAGTGAAGGGAAGAGAC 59.186 42.308 15.32 0.00 37.97 3.36
2692 5988 4.666655 GCACGTGCACATTTACTAGTGAAG 60.667 45.833 34.52 0.86 41.59 3.02
2762 6059 9.452287 GGTTGAGGGTACTAATTATAACAAACA 57.548 33.333 0.00 0.00 0.00 2.83
2789 6086 5.099484 TGTACGGTAGTAGCATATGTTCG 57.901 43.478 4.29 0.45 32.77 3.95
2879 6181 7.880160 ATGCTTGCTTCATTTAGGTGTATAA 57.120 32.000 0.00 0.00 0.00 0.98
2893 6211 5.746307 TGTCATATCTGAATGCTTGCTTC 57.254 39.130 0.00 0.00 31.85 3.86
2934 6252 5.869888 TCTTGAGAGTTAAGAATTCTTCCGC 59.130 40.000 23.70 16.36 37.40 5.54
3063 6382 8.956533 TGTAGAAATGCATGTTAGCTACATAA 57.043 30.769 11.18 0.00 45.71 1.90
3112 6437 5.419471 TGGAGAGGAAGTTAGAGAAGTTAGC 59.581 44.000 0.00 0.00 0.00 3.09
3251 6587 0.106769 TGGTCTTGGTGCTGCTCAAA 60.107 50.000 0.00 0.00 0.00 2.69
3317 6653 4.284550 GGGCTGACCTGTTGGCCA 62.285 66.667 0.00 0.00 45.68 5.36
3402 6738 1.276622 TGAGGCAGGGAAGGTAAGTC 58.723 55.000 0.00 0.00 0.00 3.01
3473 6812 1.185315 ACAAAGTGTGCAACCTGCTT 58.815 45.000 0.00 0.00 45.31 3.91
3474 6813 2.051334 TACAAAGTGTGCAACCTGCT 57.949 45.000 0.00 0.00 45.31 4.24
3530 6869 3.935203 CGGTGATTGACTTCATGTTAGCT 59.065 43.478 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.