Multiple sequence alignment - TraesCS3B01G561200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G561200 chr3B 100.000 4068 0 0 739 4806 794864305 794868372 0.000000e+00 7513.0
1 TraesCS3B01G561200 chr3B 100.000 585 0 0 1 585 794863567 794864151 0.000000e+00 1081.0
2 TraesCS3B01G561200 chr3B 89.201 463 41 5 4345 4806 753686231 753686685 1.940000e-158 569.0
3 TraesCS3B01G561200 chrUn 91.905 3249 172 47 1610 4806 45751037 45754246 0.000000e+00 4458.0
4 TraesCS3B01G561200 chrUn 85.034 735 48 30 838 1554 45750329 45751019 0.000000e+00 691.0
5 TraesCS3B01G561200 chrUn 78.788 297 32 18 41 317 79623998 79623713 2.300000e-38 171.0
6 TraesCS3B01G561200 chrUn 82.812 64 8 2 342 402 421844787 421844850 2.000000e-03 54.7
7 TraesCS3B01G561200 chr3A 91.836 1825 102 23 3003 4806 724056186 724057984 0.000000e+00 2501.0
8 TraesCS3B01G561200 chr3A 92.396 960 53 12 2122 3067 724055231 724056184 0.000000e+00 1351.0
9 TraesCS3B01G561200 chr3A 86.771 703 61 23 836 1530 724052963 724053641 0.000000e+00 754.0
10 TraesCS3B01G561200 chr3A 89.744 546 28 8 1610 2133 724053657 724054196 0.000000e+00 673.0
11 TraesCS3B01G561200 chr3A 88.147 464 45 6 4345 4806 243091818 243092273 1.180000e-150 544.0
12 TraesCS3B01G561200 chr3A 100.000 34 0 0 755 788 724052914 724052947 4.020000e-06 63.9
13 TraesCS3B01G561200 chr3D 89.693 456 39 4 4352 4806 519955134 519954686 4.170000e-160 575.0
14 TraesCS3B01G561200 chr6D 89.201 463 40 6 4345 4806 436880213 436880666 1.940000e-158 569.0
15 TraesCS3B01G561200 chr5D 89.474 456 40 4 4352 4806 417678019 417677571 1.940000e-158 569.0
16 TraesCS3B01G561200 chr7A 89.083 458 45 3 4352 4806 694260480 694260025 9.030000e-157 564.0
17 TraesCS3B01G561200 chr5B 88.553 463 44 5 4345 4806 651350872 651351326 1.950000e-153 553.0
18 TraesCS3B01G561200 chr1A 78.218 505 68 34 998 1496 431776560 431777028 7.870000e-73 285.0
19 TraesCS3B01G561200 chr6B 84.333 300 22 14 41 317 696328552 696328849 2.200000e-68 270.0
20 TraesCS3B01G561200 chr4D 83.946 299 24 13 41 317 397170577 397170281 1.030000e-66 265.0
21 TraesCS3B01G561200 chr1B 83.333 300 23 19 41 317 589925089 589924794 7.980000e-63 252.0
22 TraesCS3B01G561200 chr1B 87.179 195 15 9 105 291 150991518 150991326 3.770000e-51 213.0
23 TraesCS3B01G561200 chr1B 79.359 281 38 13 1218 1496 449387658 449387920 3.820000e-41 180.0
24 TraesCS3B01G561200 chr1B 93.043 115 8 0 998 1112 449387453 449387567 8.270000e-38 169.0
25 TraesCS3B01G561200 chr4B 89.503 181 18 1 44 224 34858425 34858604 1.350000e-55 228.0
26 TraesCS3B01G561200 chr1D 91.729 133 9 1 46 176 403209417 403209549 2.950000e-42 183.0
27 TraesCS3B01G561200 chr1D 91.111 135 11 1 184 317 403230488 403230622 1.060000e-41 182.0
28 TraesCS3B01G561200 chr1D 92.174 115 9 0 998 1112 333496238 333496352 3.850000e-36 163.0
29 TraesCS3B01G561200 chr1D 96.739 92 3 0 1218 1309 333496441 333496532 2.320000e-33 154.0
30 TraesCS3B01G561200 chr1D 94.898 98 5 0 1399 1496 333496604 333496701 2.320000e-33 154.0
31 TraesCS3B01G561200 chr7D 91.071 56 4 1 314 369 113844306 113844252 1.860000e-09 75.0
32 TraesCS3B01G561200 chr4A 94.444 36 1 1 342 376 598499470 598499505 2.000000e-03 54.7
33 TraesCS3B01G561200 chr5A 100.000 28 0 0 342 369 159526006 159525979 9.000000e-03 52.8
34 TraesCS3B01G561200 chr2B 100.000 28 0 0 342 369 424827516 424827543 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G561200 chr3B 794863567 794868372 4805 False 4297.00 7513 100.0000 1 4806 2 chr3B.!!$F2 4805
1 TraesCS3B01G561200 chrUn 45750329 45754246 3917 False 2574.50 4458 88.4695 838 4806 2 chrUn.!!$F2 3968
2 TraesCS3B01G561200 chr3A 724052914 724057984 5070 False 1068.58 2501 92.1494 755 4806 5 chr3A.!!$F2 4051

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
215 216 0.036010 ACCAGAGATTTCGTGGGCTG 60.036 55.0 6.87 0.00 35.48 4.85 F
540 541 0.179108 AGCAGATTAAGGACGGACGC 60.179 55.0 0.00 0.00 0.00 5.19 F
1388 1415 0.107897 TGTTGTGTCTGACGCCTTGT 60.108 50.0 17.86 0.00 0.00 3.16 F
2183 3286 0.034337 TGCGAGGTACCTTGTTGTCC 59.966 55.0 26.90 12.71 0.00 4.02 F
2185 3288 0.316204 CGAGGTACCTTGTTGTCCGT 59.684 55.0 17.53 0.00 0.00 4.69 F
2910 4023 0.320683 TTGTCTCATGTCGCTGGTGG 60.321 55.0 0.00 0.00 0.00 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1368 1395 0.304705 CAAGGCGTCAGACACAACAC 59.695 55.0 0.41 0.00 0.00 3.32 R
1949 1999 0.323629 AGGGAAATCGCAGAAACCGA 59.676 50.0 0.14 0.00 43.58 4.69 R
3034 4222 0.544833 TACACGGGCCCAAGGAGTTA 60.545 55.0 24.92 3.88 0.00 2.24 R
3688 4897 0.252012 CTGGTGGGTAATTTGGGCCA 60.252 55.0 0.00 0.00 0.00 5.36 R
3718 4927 0.460284 CTGGACCAGACGTGCCATAC 60.460 60.0 17.22 0.00 32.44 2.39 R
4265 5509 1.174783 GTCCGCCTCACTTGTCTCTA 58.825 55.0 0.00 0.00 0.00 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.023137 CAGGTTTGCCCATCCCTG 57.977 61.111 0.00 0.00 38.63 4.45
18 19 2.037847 AGGTTTGCCCATCCCTGC 59.962 61.111 0.00 0.00 34.66 4.85
19 20 2.037847 GGTTTGCCCATCCCTGCT 59.962 61.111 0.00 0.00 0.00 4.24
20 21 2.054453 GGTTTGCCCATCCCTGCTC 61.054 63.158 0.00 0.00 0.00 4.26
21 22 2.045045 TTTGCCCATCCCTGCTCG 60.045 61.111 0.00 0.00 0.00 5.03
22 23 2.905996 TTTGCCCATCCCTGCTCGT 61.906 57.895 0.00 0.00 0.00 4.18
23 24 3.626996 TTGCCCATCCCTGCTCGTG 62.627 63.158 0.00 0.00 0.00 4.35
24 25 4.864334 GCCCATCCCTGCTCGTGG 62.864 72.222 0.00 0.00 0.00 4.94
25 26 3.402681 CCCATCCCTGCTCGTGGT 61.403 66.667 0.00 0.00 0.00 4.16
26 27 2.671070 CCATCCCTGCTCGTGGTT 59.329 61.111 0.00 0.00 0.00 3.67
27 28 1.002134 CCATCCCTGCTCGTGGTTT 60.002 57.895 0.00 0.00 0.00 3.27
28 29 1.308069 CCATCCCTGCTCGTGGTTTG 61.308 60.000 0.00 0.00 0.00 2.93
29 30 1.675641 ATCCCTGCTCGTGGTTTGC 60.676 57.895 0.00 0.00 0.00 3.68
30 31 3.365265 CCCTGCTCGTGGTTTGCC 61.365 66.667 0.00 0.00 0.00 4.52
31 32 3.365265 CCTGCTCGTGGTTTGCCC 61.365 66.667 0.00 0.00 0.00 5.36
32 33 2.594303 CTGCTCGTGGTTTGCCCA 60.594 61.111 0.00 0.00 42.51 5.36
39 40 2.988684 TGGTTTGCCCATCCACGC 60.989 61.111 0.00 0.00 38.72 5.34
40 41 4.114997 GGTTTGCCCATCCACGCG 62.115 66.667 3.53 3.53 0.00 6.01
41 42 3.053291 GTTTGCCCATCCACGCGA 61.053 61.111 15.93 0.00 0.00 5.87
42 43 2.745884 TTTGCCCATCCACGCGAG 60.746 61.111 15.93 4.16 0.00 5.03
43 44 4.776322 TTGCCCATCCACGCGAGG 62.776 66.667 17.19 17.19 0.00 4.63
86 87 2.913060 GCTAGGGTCGCCTCCGAT 60.913 66.667 0.00 0.00 46.38 4.18
87 88 1.602888 GCTAGGGTCGCCTCCGATA 60.603 63.158 0.00 0.00 46.38 2.92
88 89 1.587933 GCTAGGGTCGCCTCCGATAG 61.588 65.000 0.00 0.00 46.38 2.08
89 90 0.250814 CTAGGGTCGCCTCCGATAGT 60.251 60.000 0.00 0.00 46.38 2.12
90 91 0.184451 TAGGGTCGCCTCCGATAGTT 59.816 55.000 0.00 0.00 46.38 2.24
91 92 1.067582 GGGTCGCCTCCGATAGTTG 59.932 63.158 0.00 0.00 46.38 3.16
92 93 1.389609 GGGTCGCCTCCGATAGTTGA 61.390 60.000 0.00 0.00 46.38 3.18
93 94 0.248949 GGTCGCCTCCGATAGTTGAC 60.249 60.000 0.00 0.00 46.38 3.18
94 95 0.454600 GTCGCCTCCGATAGTTGACA 59.545 55.000 0.00 0.00 46.38 3.58
95 96 1.067212 GTCGCCTCCGATAGTTGACAT 59.933 52.381 0.00 0.00 46.38 3.06
96 97 1.337071 TCGCCTCCGATAGTTGACATC 59.663 52.381 0.00 0.00 38.82 3.06
97 98 1.338337 CGCCTCCGATAGTTGACATCT 59.662 52.381 0.00 0.00 36.29 2.90
98 99 2.552743 CGCCTCCGATAGTTGACATCTA 59.447 50.000 0.00 0.00 36.29 1.98
99 100 3.609644 CGCCTCCGATAGTTGACATCTAC 60.610 52.174 0.00 0.00 36.29 2.59
100 101 3.305471 GCCTCCGATAGTTGACATCTACC 60.305 52.174 0.00 0.00 0.00 3.18
101 102 4.145807 CCTCCGATAGTTGACATCTACCT 58.854 47.826 0.00 0.00 0.00 3.08
102 103 4.216687 CCTCCGATAGTTGACATCTACCTC 59.783 50.000 0.00 0.00 0.00 3.85
103 104 5.050126 TCCGATAGTTGACATCTACCTCT 57.950 43.478 0.00 0.00 0.00 3.69
104 105 4.822350 TCCGATAGTTGACATCTACCTCTG 59.178 45.833 0.00 0.00 0.00 3.35
105 106 4.022762 CCGATAGTTGACATCTACCTCTGG 60.023 50.000 0.00 0.00 0.00 3.86
106 107 4.557695 CGATAGTTGACATCTACCTCTGGC 60.558 50.000 0.00 0.00 0.00 4.85
107 108 1.478510 AGTTGACATCTACCTCTGGCG 59.521 52.381 0.00 0.00 0.00 5.69
108 109 0.824109 TTGACATCTACCTCTGGCGG 59.176 55.000 0.00 0.00 0.00 6.13
109 110 1.068250 GACATCTACCTCTGGCGGC 59.932 63.158 0.00 0.00 0.00 6.53
110 111 2.028190 CATCTACCTCTGGCGGCG 59.972 66.667 0.51 0.51 0.00 6.46
111 112 3.917760 ATCTACCTCTGGCGGCGC 61.918 66.667 26.17 26.17 0.00 6.53
113 114 4.148825 CTACCTCTGGCGGCGCTT 62.149 66.667 32.30 11.38 0.00 4.68
114 115 4.143333 TACCTCTGGCGGCGCTTC 62.143 66.667 32.30 16.79 0.00 3.86
136 137 2.107141 GGGAACGATGCGAGGAGG 59.893 66.667 0.00 0.00 0.00 4.30
137 138 2.107141 GGAACGATGCGAGGAGGG 59.893 66.667 0.00 0.00 0.00 4.30
138 139 2.107141 GAACGATGCGAGGAGGGG 59.893 66.667 0.00 0.00 0.00 4.79
139 140 2.683933 AACGATGCGAGGAGGGGT 60.684 61.111 0.00 0.00 0.00 4.95
140 141 2.630592 GAACGATGCGAGGAGGGGTC 62.631 65.000 0.00 0.00 0.00 4.46
141 142 4.271816 CGATGCGAGGAGGGGTCG 62.272 72.222 0.00 0.00 40.50 4.79
142 143 2.833582 GATGCGAGGAGGGGTCGA 60.834 66.667 0.00 0.00 39.92 4.20
143 144 2.835431 ATGCGAGGAGGGGTCGAG 60.835 66.667 0.00 0.00 39.92 4.04
144 145 3.663815 ATGCGAGGAGGGGTCGAGT 62.664 63.158 0.00 0.00 39.92 4.18
145 146 3.827898 GCGAGGAGGGGTCGAGTG 61.828 72.222 0.00 0.00 39.92 3.51
146 147 3.827898 CGAGGAGGGGTCGAGTGC 61.828 72.222 0.00 0.00 39.92 4.40
147 148 2.680352 GAGGAGGGGTCGAGTGCA 60.680 66.667 0.00 0.00 0.00 4.57
148 149 2.681778 AGGAGGGGTCGAGTGCAG 60.682 66.667 0.00 0.00 0.00 4.41
149 150 4.459089 GGAGGGGTCGAGTGCAGC 62.459 72.222 0.00 0.00 0.00 5.25
150 151 4.803426 GAGGGGTCGAGTGCAGCG 62.803 72.222 2.65 2.65 0.00 5.18
156 157 3.295273 TCGAGTGCAGCGACTGGT 61.295 61.111 7.45 0.00 32.09 4.00
157 158 2.807045 CGAGTGCAGCGACTGGTC 60.807 66.667 2.92 0.00 31.21 4.02
167 168 3.827898 GACTGGTCGAGCGGAGGG 61.828 72.222 29.10 9.66 0.00 4.30
188 189 4.719369 GAGGCGTCGGTGCGAACT 62.719 66.667 0.00 0.00 37.72 3.01
189 190 3.332493 GAGGCGTCGGTGCGAACTA 62.332 63.158 0.00 0.00 37.72 2.24
190 191 2.879462 GGCGTCGGTGCGAACTAG 60.879 66.667 0.00 0.00 37.72 2.57
191 192 2.177531 GCGTCGGTGCGAACTAGA 59.822 61.111 0.00 0.00 37.72 2.43
192 193 1.868251 GCGTCGGTGCGAACTAGAG 60.868 63.158 0.00 0.00 37.72 2.43
193 194 1.868251 CGTCGGTGCGAACTAGAGC 60.868 63.158 0.00 0.00 37.72 4.09
194 195 1.868251 GTCGGTGCGAACTAGAGCG 60.868 63.158 0.00 0.14 37.72 5.03
195 196 2.036571 TCGGTGCGAACTAGAGCGA 61.037 57.895 11.95 5.98 37.28 4.93
196 197 1.154093 CGGTGCGAACTAGAGCGAA 60.154 57.895 11.95 0.05 35.87 4.70
197 198 1.403972 CGGTGCGAACTAGAGCGAAC 61.404 60.000 11.95 11.14 35.34 3.95
198 199 2.360794 GTGCGAACTAGAGCGAACC 58.639 57.895 11.95 0.00 35.87 3.62
199 200 0.388134 GTGCGAACTAGAGCGAACCA 60.388 55.000 11.95 0.18 35.87 3.67
200 201 0.109272 TGCGAACTAGAGCGAACCAG 60.109 55.000 11.95 0.00 35.87 4.00
201 202 0.170561 GCGAACTAGAGCGAACCAGA 59.829 55.000 11.95 0.00 0.00 3.86
202 203 1.795889 GCGAACTAGAGCGAACCAGAG 60.796 57.143 11.95 0.00 0.00 3.35
203 204 1.738350 CGAACTAGAGCGAACCAGAGA 59.262 52.381 0.00 0.00 0.00 3.10
204 205 2.356382 CGAACTAGAGCGAACCAGAGAT 59.644 50.000 0.00 0.00 0.00 2.75
205 206 3.181495 CGAACTAGAGCGAACCAGAGATT 60.181 47.826 0.00 0.00 0.00 2.40
206 207 4.675671 CGAACTAGAGCGAACCAGAGATTT 60.676 45.833 0.00 0.00 0.00 2.17
207 208 4.379339 ACTAGAGCGAACCAGAGATTTC 57.621 45.455 0.00 0.00 0.00 2.17
208 209 2.285827 AGAGCGAACCAGAGATTTCG 57.714 50.000 0.00 0.00 45.90 3.46
209 210 1.546476 AGAGCGAACCAGAGATTTCGT 59.454 47.619 5.70 0.00 45.12 3.85
210 211 1.656095 GAGCGAACCAGAGATTTCGTG 59.344 52.381 5.70 0.00 45.12 4.35
211 212 0.721718 GCGAACCAGAGATTTCGTGG 59.278 55.000 5.70 0.00 45.12 4.94
212 213 1.359848 CGAACCAGAGATTTCGTGGG 58.640 55.000 6.87 0.00 39.79 4.61
213 214 1.087501 GAACCAGAGATTTCGTGGGC 58.912 55.000 6.87 0.00 35.48 5.36
214 215 0.693049 AACCAGAGATTTCGTGGGCT 59.307 50.000 6.87 0.00 35.48 5.19
215 216 0.036010 ACCAGAGATTTCGTGGGCTG 60.036 55.000 6.87 0.00 35.48 4.85
216 217 1.372087 CCAGAGATTTCGTGGGCTGC 61.372 60.000 0.00 0.00 0.00 5.25
217 218 1.448540 AGAGATTTCGTGGGCTGCG 60.449 57.895 0.00 0.00 0.00 5.18
218 219 1.741770 GAGATTTCGTGGGCTGCGT 60.742 57.895 0.00 0.00 0.00 5.24
219 220 1.298859 GAGATTTCGTGGGCTGCGTT 61.299 55.000 0.00 0.00 0.00 4.84
220 221 0.889186 AGATTTCGTGGGCTGCGTTT 60.889 50.000 0.00 0.00 0.00 3.60
221 222 0.729140 GATTTCGTGGGCTGCGTTTG 60.729 55.000 0.00 0.00 0.00 2.93
222 223 2.747507 ATTTCGTGGGCTGCGTTTGC 62.748 55.000 0.00 0.00 43.20 3.68
223 224 4.927782 TCGTGGGCTGCGTTTGCT 62.928 61.111 0.00 0.00 43.34 3.91
224 225 2.997952 TTCGTGGGCTGCGTTTGCTA 62.998 55.000 0.00 0.00 43.34 3.49
225 226 2.561373 GTGGGCTGCGTTTGCTAC 59.439 61.111 0.00 0.00 43.34 3.58
226 227 1.966451 GTGGGCTGCGTTTGCTACT 60.966 57.895 0.00 0.00 43.34 2.57
227 228 1.228124 TGGGCTGCGTTTGCTACTT 60.228 52.632 0.00 0.00 43.34 2.24
228 229 0.821711 TGGGCTGCGTTTGCTACTTT 60.822 50.000 0.00 0.00 43.34 2.66
229 230 0.387239 GGGCTGCGTTTGCTACTTTG 60.387 55.000 0.00 0.00 43.34 2.77
230 231 0.387239 GGCTGCGTTTGCTACTTTGG 60.387 55.000 0.00 0.00 43.34 3.28
231 232 0.310854 GCTGCGTTTGCTACTTTGGT 59.689 50.000 0.00 0.00 43.34 3.67
232 233 1.269051 GCTGCGTTTGCTACTTTGGTT 60.269 47.619 0.00 0.00 43.34 3.67
233 234 2.798145 GCTGCGTTTGCTACTTTGGTTT 60.798 45.455 0.00 0.00 43.34 3.27
234 235 2.788786 CTGCGTTTGCTACTTTGGTTTG 59.211 45.455 0.00 0.00 43.34 2.93
235 236 2.124122 GCGTTTGCTACTTTGGTTTGG 58.876 47.619 0.00 0.00 38.39 3.28
236 237 2.738135 CGTTTGCTACTTTGGTTTGGG 58.262 47.619 0.00 0.00 0.00 4.12
237 238 2.479837 GTTTGCTACTTTGGTTTGGGC 58.520 47.619 0.00 0.00 0.00 5.36
238 239 2.080654 TTGCTACTTTGGTTTGGGCT 57.919 45.000 0.00 0.00 0.00 5.19
239 240 1.327303 TGCTACTTTGGTTTGGGCTG 58.673 50.000 0.00 0.00 0.00 4.85
240 241 1.133637 TGCTACTTTGGTTTGGGCTGA 60.134 47.619 0.00 0.00 0.00 4.26
241 242 1.541588 GCTACTTTGGTTTGGGCTGAG 59.458 52.381 0.00 0.00 0.00 3.35
242 243 2.814097 GCTACTTTGGTTTGGGCTGAGA 60.814 50.000 0.00 0.00 0.00 3.27
243 244 2.683211 ACTTTGGTTTGGGCTGAGAT 57.317 45.000 0.00 0.00 0.00 2.75
244 245 2.242043 ACTTTGGTTTGGGCTGAGATG 58.758 47.619 0.00 0.00 0.00 2.90
245 246 2.242043 CTTTGGTTTGGGCTGAGATGT 58.758 47.619 0.00 0.00 0.00 3.06
246 247 3.181434 ACTTTGGTTTGGGCTGAGATGTA 60.181 43.478 0.00 0.00 0.00 2.29
247 248 3.737559 TTGGTTTGGGCTGAGATGTAT 57.262 42.857 0.00 0.00 0.00 2.29
248 249 4.853468 TTGGTTTGGGCTGAGATGTATA 57.147 40.909 0.00 0.00 0.00 1.47
249 250 5.387113 TTGGTTTGGGCTGAGATGTATAT 57.613 39.130 0.00 0.00 0.00 0.86
250 251 6.508030 TTGGTTTGGGCTGAGATGTATATA 57.492 37.500 0.00 0.00 0.00 0.86
251 252 6.508030 TGGTTTGGGCTGAGATGTATATAA 57.492 37.500 0.00 0.00 0.00 0.98
252 253 6.905736 TGGTTTGGGCTGAGATGTATATAAA 58.094 36.000 0.00 0.00 0.00 1.40
253 254 7.526041 TGGTTTGGGCTGAGATGTATATAAAT 58.474 34.615 0.00 0.00 0.00 1.40
254 255 8.004215 TGGTTTGGGCTGAGATGTATATAAATT 58.996 33.333 0.00 0.00 0.00 1.82
255 256 8.860088 GGTTTGGGCTGAGATGTATATAAATTT 58.140 33.333 0.00 0.00 0.00 1.82
291 292 2.561478 GGGTATTCCCGTGCATACAT 57.439 50.000 0.00 0.00 44.74 2.29
292 293 3.688694 GGGTATTCCCGTGCATACATA 57.311 47.619 0.00 0.00 44.74 2.29
293 294 3.596214 GGGTATTCCCGTGCATACATAG 58.404 50.000 0.00 0.00 44.74 2.23
294 295 3.596214 GGTATTCCCGTGCATACATAGG 58.404 50.000 0.00 0.00 0.00 2.57
295 296 2.185004 ATTCCCGTGCATACATAGGC 57.815 50.000 0.00 0.00 0.00 3.93
296 297 0.833949 TTCCCGTGCATACATAGGCA 59.166 50.000 0.00 0.00 41.05 4.75
297 298 1.055849 TCCCGTGCATACATAGGCAT 58.944 50.000 1.10 0.00 45.18 4.40
298 299 2.252714 TCCCGTGCATACATAGGCATA 58.747 47.619 1.10 0.00 45.18 3.14
299 300 2.028476 TCCCGTGCATACATAGGCATAC 60.028 50.000 1.10 0.00 45.18 2.39
300 301 2.289382 CCCGTGCATACATAGGCATACA 60.289 50.000 1.10 0.00 45.18 2.29
301 302 2.736721 CCGTGCATACATAGGCATACAC 59.263 50.000 1.10 0.00 45.18 2.90
302 303 3.554960 CCGTGCATACATAGGCATACACT 60.555 47.826 1.10 0.00 45.18 3.55
303 304 4.058124 CGTGCATACATAGGCATACACTT 58.942 43.478 1.10 0.00 45.18 3.16
304 305 4.084380 CGTGCATACATAGGCATACACTTG 60.084 45.833 1.10 0.00 45.18 3.16
305 306 3.814842 TGCATACATAGGCATACACTTGC 59.185 43.478 0.00 0.00 38.15 4.01
311 312 4.536687 GCATACACTTGCCGCCGC 62.537 66.667 0.00 0.00 36.60 6.53
312 313 3.876198 CATACACTTGCCGCCGCC 61.876 66.667 0.00 0.00 0.00 6.13
313 314 4.402528 ATACACTTGCCGCCGCCA 62.403 61.111 0.00 0.00 0.00 5.69
369 370 9.570468 TGTTACTATCTTCATAGTGGGTACTAG 57.430 37.037 5.12 0.00 44.33 2.57
370 371 9.571816 GTTACTATCTTCATAGTGGGTACTAGT 57.428 37.037 0.00 0.00 44.33 2.57
399 400 7.734924 ATATATCATGCAAGTCGTCATTTGT 57.265 32.000 0.00 0.00 0.00 2.83
400 401 4.771590 ATCATGCAAGTCGTCATTTGTT 57.228 36.364 0.00 0.00 0.00 2.83
401 402 5.878332 ATCATGCAAGTCGTCATTTGTTA 57.122 34.783 0.00 0.00 0.00 2.41
402 403 5.681337 TCATGCAAGTCGTCATTTGTTAA 57.319 34.783 0.00 0.00 0.00 2.01
403 404 5.688823 TCATGCAAGTCGTCATTTGTTAAG 58.311 37.500 0.00 0.00 0.00 1.85
404 405 5.468409 TCATGCAAGTCGTCATTTGTTAAGA 59.532 36.000 0.00 0.00 0.00 2.10
405 406 5.940192 TGCAAGTCGTCATTTGTTAAGAT 57.060 34.783 0.00 0.00 0.00 2.40
406 407 5.688823 TGCAAGTCGTCATTTGTTAAGATG 58.311 37.500 0.00 0.00 0.00 2.90
407 408 5.238432 TGCAAGTCGTCATTTGTTAAGATGT 59.762 36.000 0.00 0.00 0.00 3.06
408 409 6.425417 TGCAAGTCGTCATTTGTTAAGATGTA 59.575 34.615 0.00 0.00 0.00 2.29
409 410 7.119116 TGCAAGTCGTCATTTGTTAAGATGTAT 59.881 33.333 0.00 0.00 0.00 2.29
410 411 8.600625 GCAAGTCGTCATTTGTTAAGATGTATA 58.399 33.333 0.00 0.00 0.00 1.47
427 428 9.872684 AAGATGTATATTCATTCTCATTGGGTT 57.127 29.630 0.00 0.00 0.00 4.11
428 429 9.293404 AGATGTATATTCATTCTCATTGGGTTG 57.707 33.333 0.00 0.00 0.00 3.77
429 430 9.071276 GATGTATATTCATTCTCATTGGGTTGT 57.929 33.333 0.00 0.00 0.00 3.32
430 431 8.224389 TGTATATTCATTCTCATTGGGTTGTG 57.776 34.615 0.00 0.00 0.00 3.33
431 432 7.833682 TGTATATTCATTCTCATTGGGTTGTGT 59.166 33.333 0.00 0.00 0.00 3.72
432 433 7.722949 ATATTCATTCTCATTGGGTTGTGTT 57.277 32.000 0.00 0.00 0.00 3.32
433 434 8.821686 ATATTCATTCTCATTGGGTTGTGTTA 57.178 30.769 0.00 0.00 0.00 2.41
434 435 5.957842 TCATTCTCATTGGGTTGTGTTAC 57.042 39.130 0.00 0.00 0.00 2.50
435 436 4.454161 TCATTCTCATTGGGTTGTGTTACG 59.546 41.667 0.00 0.00 0.00 3.18
436 437 2.147958 TCTCATTGGGTTGTGTTACGC 58.852 47.619 0.00 0.00 0.00 4.42
437 438 2.151202 CTCATTGGGTTGTGTTACGCT 58.849 47.619 0.00 0.00 32.66 5.07
438 439 3.007074 TCTCATTGGGTTGTGTTACGCTA 59.993 43.478 0.00 0.00 32.66 4.26
439 440 3.068560 TCATTGGGTTGTGTTACGCTAC 58.931 45.455 2.12 2.12 32.66 3.58
440 441 2.914695 TTGGGTTGTGTTACGCTACT 57.085 45.000 9.91 0.00 32.66 2.57
441 442 2.914695 TGGGTTGTGTTACGCTACTT 57.085 45.000 9.91 0.00 32.66 2.24
442 443 2.758009 TGGGTTGTGTTACGCTACTTC 58.242 47.619 9.91 4.58 32.66 3.01
443 444 2.102757 TGGGTTGTGTTACGCTACTTCA 59.897 45.455 9.91 6.69 32.66 3.02
444 445 3.132925 GGGTTGTGTTACGCTACTTCAA 58.867 45.455 9.91 0.00 0.00 2.69
445 446 3.560896 GGGTTGTGTTACGCTACTTCAAA 59.439 43.478 9.91 0.00 0.00 2.69
446 447 4.521010 GGTTGTGTTACGCTACTTCAAAC 58.479 43.478 9.91 0.00 0.00 2.93
447 448 4.034279 GGTTGTGTTACGCTACTTCAAACA 59.966 41.667 9.91 0.00 0.00 2.83
448 449 4.782252 TGTGTTACGCTACTTCAAACAC 57.218 40.909 9.15 9.15 46.32 3.32
449 450 4.435425 TGTGTTACGCTACTTCAAACACT 58.565 39.130 15.24 0.00 46.29 3.55
450 451 4.871557 TGTGTTACGCTACTTCAAACACTT 59.128 37.500 15.24 0.00 46.29 3.16
451 452 5.195379 GTGTTACGCTACTTCAAACACTTG 58.805 41.667 8.88 0.00 44.02 3.16
452 453 4.271533 TGTTACGCTACTTCAAACACTTGG 59.728 41.667 0.00 0.00 33.01 3.61
453 454 1.602377 ACGCTACTTCAAACACTTGGC 59.398 47.619 0.00 0.00 33.01 4.52
454 455 1.873591 CGCTACTTCAAACACTTGGCT 59.126 47.619 0.00 0.00 33.01 4.75
455 456 2.290641 CGCTACTTCAAACACTTGGCTT 59.709 45.455 0.00 0.00 33.01 4.35
456 457 3.607078 CGCTACTTCAAACACTTGGCTTC 60.607 47.826 0.00 0.00 33.01 3.86
457 458 3.315191 GCTACTTCAAACACTTGGCTTCA 59.685 43.478 0.00 0.00 33.01 3.02
458 459 3.782889 ACTTCAAACACTTGGCTTCAC 57.217 42.857 0.00 0.00 33.01 3.18
459 460 3.088532 ACTTCAAACACTTGGCTTCACA 58.911 40.909 0.00 0.00 33.01 3.58
460 461 3.701040 ACTTCAAACACTTGGCTTCACAT 59.299 39.130 0.00 0.00 33.01 3.21
461 462 4.160252 ACTTCAAACACTTGGCTTCACATT 59.840 37.500 0.00 0.00 33.01 2.71
462 463 5.359576 ACTTCAAACACTTGGCTTCACATTA 59.640 36.000 0.00 0.00 33.01 1.90
463 464 5.843673 TCAAACACTTGGCTTCACATTAA 57.156 34.783 0.00 0.00 33.01 1.40
464 465 5.587289 TCAAACACTTGGCTTCACATTAAC 58.413 37.500 0.00 0.00 33.01 2.01
465 466 5.359576 TCAAACACTTGGCTTCACATTAACT 59.640 36.000 0.00 0.00 33.01 2.24
466 467 6.544197 TCAAACACTTGGCTTCACATTAACTA 59.456 34.615 0.00 0.00 33.01 2.24
467 468 5.941948 ACACTTGGCTTCACATTAACTAC 57.058 39.130 0.00 0.00 0.00 2.73
468 469 5.373222 ACACTTGGCTTCACATTAACTACA 58.627 37.500 0.00 0.00 0.00 2.74
469 470 5.238650 ACACTTGGCTTCACATTAACTACAC 59.761 40.000 0.00 0.00 0.00 2.90
470 471 5.238432 CACTTGGCTTCACATTAACTACACA 59.762 40.000 0.00 0.00 0.00 3.72
471 472 6.003950 ACTTGGCTTCACATTAACTACACAT 58.996 36.000 0.00 0.00 0.00 3.21
472 473 5.878332 TGGCTTCACATTAACTACACATG 57.122 39.130 0.00 0.00 0.00 3.21
473 474 4.155826 TGGCTTCACATTAACTACACATGC 59.844 41.667 0.00 0.00 0.00 4.06
474 475 4.438744 GGCTTCACATTAACTACACATGCC 60.439 45.833 0.00 0.00 0.00 4.40
475 476 4.155826 GCTTCACATTAACTACACATGCCA 59.844 41.667 0.00 0.00 0.00 4.92
476 477 5.674569 GCTTCACATTAACTACACATGCCAG 60.675 44.000 0.00 0.00 0.00 4.85
477 478 5.159273 TCACATTAACTACACATGCCAGA 57.841 39.130 0.00 0.00 0.00 3.86
478 479 5.744171 TCACATTAACTACACATGCCAGAT 58.256 37.500 0.00 0.00 0.00 2.90
479 480 6.883744 TCACATTAACTACACATGCCAGATA 58.116 36.000 0.00 0.00 0.00 1.98
480 481 7.334858 TCACATTAACTACACATGCCAGATAA 58.665 34.615 0.00 0.00 0.00 1.75
481 482 7.495606 TCACATTAACTACACATGCCAGATAAG 59.504 37.037 0.00 0.00 0.00 1.73
482 483 7.280876 CACATTAACTACACATGCCAGATAAGT 59.719 37.037 0.00 0.00 0.00 2.24
483 484 8.482943 ACATTAACTACACATGCCAGATAAGTA 58.517 33.333 0.00 0.00 0.00 2.24
484 485 9.325198 CATTAACTACACATGCCAGATAAGTAA 57.675 33.333 0.00 0.00 0.00 2.24
485 486 9.899661 ATTAACTACACATGCCAGATAAGTAAA 57.100 29.630 0.00 0.00 0.00 2.01
486 487 7.611213 AACTACACATGCCAGATAAGTAAAC 57.389 36.000 0.00 0.00 0.00 2.01
487 488 6.947464 ACTACACATGCCAGATAAGTAAACT 58.053 36.000 0.00 0.00 0.00 2.66
488 489 7.394816 ACTACACATGCCAGATAAGTAAACTT 58.605 34.615 0.39 0.39 39.85 2.66
489 490 6.500684 ACACATGCCAGATAAGTAAACTTG 57.499 37.500 5.62 0.00 37.40 3.16
490 491 6.003950 ACACATGCCAGATAAGTAAACTTGT 58.996 36.000 5.62 0.00 37.40 3.16
491 492 6.490040 ACACATGCCAGATAAGTAAACTTGTT 59.510 34.615 5.62 0.00 37.40 2.83
492 493 7.023575 CACATGCCAGATAAGTAAACTTGTTC 58.976 38.462 5.62 3.21 37.40 3.18
493 494 6.942576 ACATGCCAGATAAGTAAACTTGTTCT 59.057 34.615 5.62 5.26 37.40 3.01
494 495 6.801539 TGCCAGATAAGTAAACTTGTTCTG 57.198 37.500 20.10 20.10 41.76 3.02
495 496 6.530120 TGCCAGATAAGTAAACTTGTTCTGA 58.470 36.000 24.56 12.66 43.09 3.27
496 497 6.650807 TGCCAGATAAGTAAACTTGTTCTGAG 59.349 38.462 24.56 18.87 43.09 3.35
497 498 6.874134 GCCAGATAAGTAAACTTGTTCTGAGA 59.126 38.462 24.56 1.42 43.09 3.27
498 499 7.550906 GCCAGATAAGTAAACTTGTTCTGAGAT 59.449 37.037 24.56 5.25 43.09 2.75
499 500 8.877779 CCAGATAAGTAAACTTGTTCTGAGATG 58.122 37.037 24.56 13.09 43.09 2.90
500 501 9.429359 CAGATAAGTAAACTTGTTCTGAGATGT 57.571 33.333 21.35 0.00 43.09 3.06
501 502 9.429359 AGATAAGTAAACTTGTTCTGAGATGTG 57.571 33.333 5.62 0.00 37.40 3.21
502 503 9.209175 GATAAGTAAACTTGTTCTGAGATGTGT 57.791 33.333 5.62 0.00 37.40 3.72
503 504 7.865706 AAGTAAACTTGTTCTGAGATGTGTT 57.134 32.000 0.00 0.00 34.38 3.32
504 505 8.958119 AAGTAAACTTGTTCTGAGATGTGTTA 57.042 30.769 0.00 0.00 34.38 2.41
505 506 9.561069 AAGTAAACTTGTTCTGAGATGTGTTAT 57.439 29.630 0.00 0.00 34.38 1.89
506 507 8.993121 AGTAAACTTGTTCTGAGATGTGTTATG 58.007 33.333 0.00 0.00 0.00 1.90
507 508 7.807977 AAACTTGTTCTGAGATGTGTTATGT 57.192 32.000 0.00 0.00 0.00 2.29
508 509 7.807977 AACTTGTTCTGAGATGTGTTATGTT 57.192 32.000 0.00 0.00 0.00 2.71
509 510 8.902540 AACTTGTTCTGAGATGTGTTATGTTA 57.097 30.769 0.00 0.00 0.00 2.41
510 511 8.311650 ACTTGTTCTGAGATGTGTTATGTTAC 57.688 34.615 0.00 0.00 0.00 2.50
511 512 8.150945 ACTTGTTCTGAGATGTGTTATGTTACT 58.849 33.333 0.00 0.00 0.00 2.24
512 513 8.534333 TTGTTCTGAGATGTGTTATGTTACTC 57.466 34.615 0.00 0.00 0.00 2.59
513 514 6.806739 TGTTCTGAGATGTGTTATGTTACTCG 59.193 38.462 0.00 0.00 0.00 4.18
514 515 5.340803 TCTGAGATGTGTTATGTTACTCGC 58.659 41.667 0.00 0.00 0.00 5.03
515 516 5.125578 TCTGAGATGTGTTATGTTACTCGCT 59.874 40.000 0.00 0.00 0.00 4.93
516 517 6.317893 TCTGAGATGTGTTATGTTACTCGCTA 59.682 38.462 0.00 0.00 0.00 4.26
517 518 6.859017 TGAGATGTGTTATGTTACTCGCTAA 58.141 36.000 0.00 0.00 0.00 3.09
518 519 6.972901 TGAGATGTGTTATGTTACTCGCTAAG 59.027 38.462 0.00 0.00 0.00 2.18
519 520 6.864342 AGATGTGTTATGTTACTCGCTAAGT 58.136 36.000 0.00 0.00 42.33 2.24
520 521 7.321153 AGATGTGTTATGTTACTCGCTAAGTT 58.679 34.615 0.00 0.00 39.55 2.66
521 522 8.464404 AGATGTGTTATGTTACTCGCTAAGTTA 58.536 33.333 0.00 0.00 39.55 2.24
522 523 8.630278 ATGTGTTATGTTACTCGCTAAGTTAG 57.370 34.615 5.47 5.47 39.55 2.34
537 538 6.145338 CTAAGTTAGCAGATTAAGGACGGA 57.855 41.667 0.00 0.00 0.00 4.69
538 539 4.388378 AGTTAGCAGATTAAGGACGGAC 57.612 45.455 0.00 0.00 0.00 4.79
539 540 3.114065 GTTAGCAGATTAAGGACGGACG 58.886 50.000 0.00 0.00 0.00 4.79
540 541 0.179108 AGCAGATTAAGGACGGACGC 60.179 55.000 0.00 0.00 0.00 5.19
541 542 1.480219 GCAGATTAAGGACGGACGCG 61.480 60.000 3.53 3.53 0.00 6.01
542 543 1.226888 AGATTAAGGACGGACGCGC 60.227 57.895 5.73 0.00 0.00 6.86
543 544 1.517694 GATTAAGGACGGACGCGCA 60.518 57.895 5.73 0.00 0.00 6.09
544 545 1.480219 GATTAAGGACGGACGCGCAG 61.480 60.000 5.73 2.42 0.00 5.18
545 546 2.221906 ATTAAGGACGGACGCGCAGT 62.222 55.000 5.73 6.37 0.00 4.40
555 556 4.717629 CGCGCAGTCGGTCCAGAA 62.718 66.667 8.75 0.00 35.95 3.02
556 557 2.357034 GCGCAGTCGGTCCAGAAA 60.357 61.111 0.30 0.00 35.95 2.52
557 558 1.959226 GCGCAGTCGGTCCAGAAAA 60.959 57.895 0.30 0.00 35.95 2.29
558 559 1.503818 GCGCAGTCGGTCCAGAAAAA 61.504 55.000 0.30 0.00 35.95 1.94
559 560 0.512952 CGCAGTCGGTCCAGAAAAAG 59.487 55.000 0.00 0.00 0.00 2.27
560 561 1.872237 CGCAGTCGGTCCAGAAAAAGA 60.872 52.381 0.00 0.00 0.00 2.52
561 562 2.218603 GCAGTCGGTCCAGAAAAAGAA 58.781 47.619 0.00 0.00 0.00 2.52
562 563 2.224314 GCAGTCGGTCCAGAAAAAGAAG 59.776 50.000 0.00 0.00 0.00 2.85
563 564 3.728845 CAGTCGGTCCAGAAAAAGAAGA 58.271 45.455 0.00 0.00 0.00 2.87
564 565 4.127171 CAGTCGGTCCAGAAAAAGAAGAA 58.873 43.478 0.00 0.00 0.00 2.52
565 566 4.024809 CAGTCGGTCCAGAAAAAGAAGAAC 60.025 45.833 0.00 0.00 0.00 3.01
566 567 4.127907 GTCGGTCCAGAAAAAGAAGAACT 58.872 43.478 0.00 0.00 0.00 3.01
567 568 4.575236 GTCGGTCCAGAAAAAGAAGAACTT 59.425 41.667 0.00 0.00 40.98 2.66
569 570 5.296035 TCGGTCCAGAAAAAGAAGAACTTTC 59.704 40.000 0.00 0.00 46.55 2.62
570 571 5.297029 CGGTCCAGAAAAAGAAGAACTTTCT 59.703 40.000 0.00 0.00 46.55 2.52
578 579 9.578439 AGAAAAAGAAGAACTTTCTGACAAATG 57.422 29.630 0.00 0.00 46.55 2.32
579 580 7.761651 AAAAGAAGAACTTTCTGACAAATGC 57.238 32.000 0.00 0.00 46.55 3.56
580 581 5.444663 AGAAGAACTTTCTGACAAATGCC 57.555 39.130 0.00 0.00 37.65 4.40
581 582 5.136105 AGAAGAACTTTCTGACAAATGCCT 58.864 37.500 0.00 0.00 37.65 4.75
582 583 5.595952 AGAAGAACTTTCTGACAAATGCCTT 59.404 36.000 0.00 0.00 37.65 4.35
583 584 5.859205 AGAACTTTCTGACAAATGCCTTT 57.141 34.783 0.00 0.00 35.89 3.11
584 585 6.225981 AGAACTTTCTGACAAATGCCTTTT 57.774 33.333 0.00 0.00 35.89 2.27
799 800 4.530094 CGGATGACGCTCTATCTCTATC 57.470 50.000 0.00 0.00 34.82 2.08
800 801 3.311322 CGGATGACGCTCTATCTCTATCC 59.689 52.174 0.00 0.00 34.82 2.59
801 802 3.311322 GGATGACGCTCTATCTCTATCCG 59.689 52.174 0.00 0.00 0.00 4.18
802 803 3.679824 TGACGCTCTATCTCTATCCGA 57.320 47.619 0.00 0.00 0.00 4.55
803 804 3.327626 TGACGCTCTATCTCTATCCGAC 58.672 50.000 0.00 0.00 0.00 4.79
804 805 2.339418 ACGCTCTATCTCTATCCGACG 58.661 52.381 0.00 0.00 0.00 5.12
805 806 2.288948 ACGCTCTATCTCTATCCGACGT 60.289 50.000 0.00 0.00 0.00 4.34
806 807 2.092995 CGCTCTATCTCTATCCGACGTG 59.907 54.545 0.00 0.00 0.00 4.49
807 808 3.327626 GCTCTATCTCTATCCGACGTGA 58.672 50.000 0.00 0.00 0.00 4.35
808 809 3.123959 GCTCTATCTCTATCCGACGTGAC 59.876 52.174 0.00 0.00 0.00 3.67
809 810 3.661944 TCTATCTCTATCCGACGTGACC 58.338 50.000 0.00 0.00 0.00 4.02
810 811 1.227639 ATCTCTATCCGACGTGACCG 58.772 55.000 0.00 0.00 40.83 4.79
811 812 1.009900 CTCTATCCGACGTGACCGC 60.010 63.158 0.00 0.00 37.70 5.68
812 813 1.712018 CTCTATCCGACGTGACCGCA 61.712 60.000 0.00 0.00 37.70 5.69
813 814 1.585521 CTATCCGACGTGACCGCAC 60.586 63.158 0.00 0.00 41.67 5.34
814 815 2.931713 CTATCCGACGTGACCGCACC 62.932 65.000 0.00 0.00 42.09 5.01
855 856 2.573869 CGAGGGCTCGCTTCAAGA 59.426 61.111 0.00 0.00 46.50 3.02
889 890 3.792053 CTCGCGGCCCATGTACCTC 62.792 68.421 6.13 0.00 0.00 3.85
890 891 3.849951 CGCGGCCCATGTACCTCT 61.850 66.667 0.00 0.00 0.00 3.69
892 893 2.417516 CGGCCCATGTACCTCTCG 59.582 66.667 0.00 0.00 0.00 4.04
893 894 2.822399 GGCCCATGTACCTCTCGG 59.178 66.667 0.00 0.00 0.00 4.63
896 906 2.808206 CCCATGTACCTCTCGGCCC 61.808 68.421 0.00 0.00 0.00 5.80
899 909 1.828660 ATGTACCTCTCGGCCCTCG 60.829 63.158 0.00 0.00 40.90 4.63
916 927 1.330521 CTCGCCTCTTCTTCTCTCTCG 59.669 57.143 0.00 0.00 0.00 4.04
926 937 3.509757 CTCTCTCGCGGCTCGGAA 61.510 66.667 6.13 0.00 39.05 4.30
929 942 4.251843 TCTCGCGGCTCGGAATCG 62.252 66.667 6.13 0.00 39.05 3.34
932 945 4.647615 CGCGGCTCGGAATCGGAT 62.648 66.667 0.00 0.00 36.95 4.18
934 947 3.043419 CGGCTCGGAATCGGATCT 58.957 61.111 0.00 0.00 36.95 2.75
950 963 0.889638 ATCTAGATTCCGGCGAGCGA 60.890 55.000 9.30 0.00 0.00 4.93
962 975 2.105930 GAGCGACCCTAGCAGCAG 59.894 66.667 0.00 0.00 37.01 4.24
963 976 4.154347 AGCGACCCTAGCAGCAGC 62.154 66.667 0.00 0.00 42.56 5.25
964 977 4.457496 GCGACCCTAGCAGCAGCA 62.457 66.667 3.17 0.00 45.49 4.41
965 978 2.202851 CGACCCTAGCAGCAGCAG 60.203 66.667 3.17 0.00 45.49 4.24
966 979 2.714991 CGACCCTAGCAGCAGCAGA 61.715 63.158 3.17 0.00 45.49 4.26
967 980 1.143620 GACCCTAGCAGCAGCAGAG 59.856 63.158 3.17 0.00 45.49 3.35
968 981 2.308968 GACCCTAGCAGCAGCAGAGG 62.309 65.000 13.29 13.29 45.49 3.69
969 982 2.203042 CCTAGCAGCAGCAGAGGC 60.203 66.667 3.17 0.00 45.49 4.70
1133 1156 2.216898 CGTACCTTACCCTACTCCTCG 58.783 57.143 0.00 0.00 0.00 4.63
1204 1230 4.824515 CCTCTCTCTCCCCGCCGT 62.825 72.222 0.00 0.00 0.00 5.68
1205 1231 3.213402 CTCTCTCTCCCCGCCGTC 61.213 72.222 0.00 0.00 0.00 4.79
1320 1346 3.108376 AGGGCGTAAGATTTCTCTTCCT 58.892 45.455 0.00 0.00 40.92 3.36
1327 1353 6.270064 CGTAAGATTTCTCTTCCTCTTCTCC 58.730 44.000 0.00 0.00 40.92 3.71
1330 1357 4.962362 AGATTTCTCTTCCTCTTCTCCTCC 59.038 45.833 0.00 0.00 0.00 4.30
1345 1372 1.066587 CTCCTCTTCCGTCCGATGC 59.933 63.158 0.00 0.00 0.00 3.91
1384 1411 2.928361 CGTGTTGTGTCTGACGCC 59.072 61.111 17.86 4.95 0.00 5.68
1387 1414 0.304705 GTGTTGTGTCTGACGCCTTG 59.695 55.000 17.86 0.00 0.00 3.61
1388 1415 0.107897 TGTTGTGTCTGACGCCTTGT 60.108 50.000 17.86 0.00 0.00 3.16
1389 1416 1.014352 GTTGTGTCTGACGCCTTGTT 58.986 50.000 17.86 0.00 0.00 2.83
1391 1418 1.295792 TGTGTCTGACGCCTTGTTTC 58.704 50.000 17.86 0.00 0.00 2.78
1398 1425 4.404654 CGCCTTGTTTCGGCTGCC 62.405 66.667 9.11 9.11 45.37 4.85
1420 1447 1.887707 GTTCCCCATCACGGCGATC 60.888 63.158 16.62 0.00 29.21 3.69
1518 1546 2.046892 CGCTGGACTGACCCCAAG 60.047 66.667 0.00 0.00 38.00 3.61
1531 1559 0.332632 CCCCAAGCTCCCTCAATTCA 59.667 55.000 0.00 0.00 0.00 2.57
1545 1573 4.883585 CCTCAATTCATTCCCTCGATTGAA 59.116 41.667 0.00 0.00 40.68 2.69
1546 1574 5.357878 CCTCAATTCATTCCCTCGATTGAAA 59.642 40.000 1.45 0.00 40.14 2.69
1547 1575 6.040166 CCTCAATTCATTCCCTCGATTGAAAT 59.960 38.462 1.45 0.00 40.14 2.17
1548 1576 7.229306 CCTCAATTCATTCCCTCGATTGAAATA 59.771 37.037 1.45 0.00 40.14 1.40
1549 1577 8.696043 TCAATTCATTCCCTCGATTGAAATAT 57.304 30.769 1.45 0.00 40.14 1.28
1550 1578 9.791801 TCAATTCATTCCCTCGATTGAAATATA 57.208 29.630 1.45 0.00 40.14 0.86
1627 1655 5.291371 TGTCGTTCTATTCTCTCTACTGACG 59.709 44.000 0.00 0.00 0.00 4.35
1628 1656 4.809958 TCGTTCTATTCTCTCTACTGACGG 59.190 45.833 0.00 0.00 0.00 4.79
1629 1657 4.809958 CGTTCTATTCTCTCTACTGACGGA 59.190 45.833 0.00 0.00 0.00 4.69
1705 1733 0.819666 GGCCCGATTCCACCATTCTC 60.820 60.000 0.00 0.00 0.00 2.87
1760 1800 2.095059 GTGGGTGTTGCTTATGCTTCTG 60.095 50.000 1.96 0.00 40.48 3.02
1761 1801 1.135286 GGGTGTTGCTTATGCTTCTGC 60.135 52.381 1.96 0.00 40.48 4.26
1822 1866 0.793861 TGCACAAAATAGTCGACGGC 59.206 50.000 10.46 0.00 0.00 5.68
1882 1926 2.987547 GACCACGACCTCACCGGA 60.988 66.667 9.46 0.00 36.31 5.14
1934 1983 1.134699 TGCCGCAGATCAAGGTAGAAG 60.135 52.381 0.00 0.00 0.00 2.85
1935 1984 1.137086 GCCGCAGATCAAGGTAGAAGA 59.863 52.381 0.00 0.00 0.00 2.87
1942 1992 0.611714 TCAAGGTAGAAGAACCGCCC 59.388 55.000 0.00 0.00 44.77 6.13
2023 2080 3.130516 TGGATTGATCTCGTCTGGTGTAC 59.869 47.826 0.00 0.00 0.00 2.90
2156 3259 2.206750 CTTCACGACCGGAGTTTTTCA 58.793 47.619 9.46 0.00 0.00 2.69
2181 3284 1.944709 GTTTGCGAGGTACCTTGTTGT 59.055 47.619 26.90 0.00 0.00 3.32
2183 3286 0.034337 TGCGAGGTACCTTGTTGTCC 59.966 55.000 26.90 12.71 0.00 4.02
2185 3288 0.316204 CGAGGTACCTTGTTGTCCGT 59.684 55.000 17.53 0.00 0.00 4.69
2199 3302 2.076100 TGTCCGTTTGCTGAGCTAATG 58.924 47.619 12.79 12.79 32.01 1.90
2284 3388 1.586154 ATTTTGGGCTTGCGAGGTCG 61.586 55.000 2.37 0.00 43.27 4.79
2372 3476 2.906389 AGAACTTCTGCCCACATAGTCA 59.094 45.455 0.00 0.00 0.00 3.41
2422 3527 4.551797 GCCACGTTTGTTGCCTTTTATTTG 60.552 41.667 0.00 0.00 30.80 2.32
2428 3536 6.129561 CGTTTGTTGCCTTTTATTTGACTACG 60.130 38.462 0.00 0.00 0.00 3.51
2430 3538 4.517453 TGTTGCCTTTTATTTGACTACGCT 59.483 37.500 0.00 0.00 0.00 5.07
2431 3539 4.939509 TGCCTTTTATTTGACTACGCTC 57.060 40.909 0.00 0.00 0.00 5.03
2432 3540 4.320023 TGCCTTTTATTTGACTACGCTCA 58.680 39.130 0.00 0.00 0.00 4.26
2433 3541 4.941263 TGCCTTTTATTTGACTACGCTCAT 59.059 37.500 0.00 0.00 0.00 2.90
2434 3542 5.414454 TGCCTTTTATTTGACTACGCTCATT 59.586 36.000 0.00 0.00 0.00 2.57
2435 3543 5.739161 GCCTTTTATTTGACTACGCTCATTG 59.261 40.000 0.00 0.00 0.00 2.82
2436 3544 6.622896 GCCTTTTATTTGACTACGCTCATTGT 60.623 38.462 0.00 0.00 0.00 2.71
2604 3717 3.701205 TGACTTATGAGGCTTTCAGCA 57.299 42.857 0.00 0.00 44.75 4.41
2652 3765 4.615588 TGTGATTTAAGCCCCCTTTTTG 57.384 40.909 0.00 0.00 32.47 2.44
2667 3780 5.175859 CCCTTTTTGCACTCGAGTTATAGA 58.824 41.667 17.26 0.00 0.00 1.98
2791 3904 1.645034 CTGGTGTCACTAAGATGCCG 58.355 55.000 2.35 0.00 0.00 5.69
2816 3929 1.064017 ACAACAACTTCAAGCCTCCCA 60.064 47.619 0.00 0.00 0.00 4.37
2887 4000 4.057432 GCTTGGCATTGTTATGTTGTGTT 58.943 39.130 0.00 0.00 34.12 3.32
2895 4008 6.639212 CATTGTTATGTTGTGTTGCTTTGTC 58.361 36.000 0.00 0.00 0.00 3.18
2910 4023 0.320683 TTGTCTCATGTCGCTGGTGG 60.321 55.000 0.00 0.00 0.00 4.61
2916 4029 1.301716 ATGTCGCTGGTGGTCACAC 60.302 57.895 3.40 0.00 46.97 3.82
3005 4119 9.071276 GATCCATCACAGGTATAAAATGACAAT 57.929 33.333 0.00 0.00 0.00 2.71
3036 4224 8.838452 CAAGTTTTGCAATCAAATGCTTTTAA 57.162 26.923 0.00 0.00 46.54 1.52
3038 4226 8.212317 AGTTTTGCAATCAAATGCTTTTAACT 57.788 26.923 0.00 0.00 46.54 2.24
3040 4228 6.783892 TTGCAATCAAATGCTTTTAACTCC 57.216 33.333 0.00 0.00 46.54 3.85
3067 4264 5.220912 GGGCCCGTGTATGATAAAAGTTTAC 60.221 44.000 5.69 0.00 0.00 2.01
3084 4281 7.770801 AAGTTTACCATTCTTTGCTTTTCAC 57.229 32.000 0.00 0.00 0.00 3.18
3085 4282 7.112452 AGTTTACCATTCTTTGCTTTTCACT 57.888 32.000 0.00 0.00 0.00 3.41
3086 4283 7.203218 AGTTTACCATTCTTTGCTTTTCACTC 58.797 34.615 0.00 0.00 0.00 3.51
3188 4388 1.883021 CCATGTGACCCGAAAAGGC 59.117 57.895 0.00 0.00 39.21 4.35
3190 4390 1.176527 CATGTGACCCGAAAAGGCAT 58.823 50.000 0.00 0.00 39.21 4.40
3197 4397 0.527565 CCCGAAAAGGCATGTTCTGG 59.472 55.000 0.00 0.00 39.21 3.86
3304 4513 5.049828 TGATACAGTTTGCCATCGTATGAG 58.950 41.667 0.00 0.00 0.00 2.90
3502 4711 1.429148 GCCACTATGCGAAACCTCGG 61.429 60.000 0.00 0.00 45.55 4.63
3592 4801 2.276309 GAGGGCAAGGCAGTGGCTAT 62.276 60.000 20.91 7.56 43.37 2.97
3595 4804 2.779033 GCAAGGCAGTGGCTATGGC 61.779 63.158 20.91 19.07 43.18 4.40
3647 4856 2.435586 CTCCGTTCCCTGCAGCAG 60.436 66.667 16.23 16.23 0.00 4.24
3688 4897 1.961180 GCAGTGGCTATGGAGTCGGT 61.961 60.000 0.00 0.00 36.96 4.69
3691 4900 2.109181 GGCTATGGAGTCGGTGGC 59.891 66.667 0.00 0.00 0.00 5.01
3976 5186 9.098355 TCAATGTATAAACTGAGATTGTAGCAC 57.902 33.333 0.00 0.00 0.00 4.40
3995 5206 2.095567 CACAACAGGCTATTGCAGTGTC 60.096 50.000 5.22 0.00 41.91 3.67
4142 5362 9.683069 AGAAAAGTTTGCTATCAATTACTGTTG 57.317 29.630 0.00 0.00 26.64 3.33
4187 5407 2.113860 TGTGCCCTGAGCTTAATCAC 57.886 50.000 0.00 0.00 44.23 3.06
4188 5408 1.350684 TGTGCCCTGAGCTTAATCACA 59.649 47.619 0.00 0.00 44.23 3.58
4189 5409 2.224744 TGTGCCCTGAGCTTAATCACAA 60.225 45.455 7.11 0.00 44.23 3.33
4190 5410 2.421424 GTGCCCTGAGCTTAATCACAAG 59.579 50.000 0.00 0.00 44.23 3.16
4191 5411 2.305635 TGCCCTGAGCTTAATCACAAGA 59.694 45.455 0.00 0.00 44.23 3.02
4192 5412 3.244875 TGCCCTGAGCTTAATCACAAGAA 60.245 43.478 0.00 0.00 44.23 2.52
4193 5413 3.950395 GCCCTGAGCTTAATCACAAGAAT 59.050 43.478 0.00 0.00 38.99 2.40
4194 5414 4.036144 GCCCTGAGCTTAATCACAAGAATC 59.964 45.833 0.00 0.00 38.99 2.52
4195 5415 5.188434 CCCTGAGCTTAATCACAAGAATCA 58.812 41.667 0.00 0.00 0.00 2.57
4196 5416 5.826737 CCCTGAGCTTAATCACAAGAATCAT 59.173 40.000 0.00 0.00 0.00 2.45
4197 5417 6.994496 CCCTGAGCTTAATCACAAGAATCATA 59.006 38.462 0.00 0.00 0.00 2.15
4198 5418 7.664731 CCCTGAGCTTAATCACAAGAATCATAT 59.335 37.037 0.00 0.00 0.00 1.78
4199 5419 9.716531 CCTGAGCTTAATCACAAGAATCATATA 57.283 33.333 0.00 0.00 0.00 0.86
4217 5437 8.627208 ATCATATACATACTTGCTTCTTTGGG 57.373 34.615 0.00 0.00 0.00 4.12
4218 5438 7.801104 TCATATACATACTTGCTTCTTTGGGA 58.199 34.615 0.00 0.00 0.00 4.37
4265 5509 5.091261 ACTTGCTTCTAAGGATCAACGAT 57.909 39.130 0.00 0.00 31.94 3.73
4286 5530 2.143594 GAGACAAGTGAGGCGGACGT 62.144 60.000 0.00 0.00 0.00 4.34
4290 5534 2.495409 AAGTGAGGCGGACGTGTCA 61.495 57.895 0.00 0.00 0.00 3.58
4349 5594 9.844257 AAGATTGCTTCTAATAAGTTCTAGCAT 57.156 29.630 0.00 0.00 33.05 3.79
4350 5595 9.270640 AGATTGCTTCTAATAAGTTCTAGCATG 57.729 33.333 0.00 0.00 30.96 4.06
4368 5613 3.368843 GCATGTGTTAGCCAAAATCTTGC 59.631 43.478 0.00 0.00 0.00 4.01
4385 5630 8.621532 AAATCTTGCTACATGAGAAACACTAA 57.378 30.769 0.00 0.00 0.00 2.24
4502 5747 2.742589 GACTGGAATTCCAAGTTCGTCC 59.257 50.000 26.87 11.49 46.97 4.79
4544 5789 4.287067 AGGATTCAGGTCAGCAAGTTTAGA 59.713 41.667 0.00 0.00 0.00 2.10
4572 5817 5.652014 TGTTTATTTAAGATGCAGGACTGGG 59.348 40.000 1.01 0.00 0.00 4.45
4585 5830 4.816925 GCAGGACTGGGATTTGTAACTATC 59.183 45.833 1.01 0.00 0.00 2.08
4717 5962 8.428063 CAAGAAAGTCCCTCATTATCACTATCT 58.572 37.037 0.00 0.00 0.00 1.98
4765 6010 7.547019 TCAAGTAAGTATCAGAAATGCAGAGTG 59.453 37.037 0.00 0.00 0.00 3.51
4767 6012 4.833478 AGTATCAGAAATGCAGAGTGGT 57.167 40.909 0.00 0.00 0.00 4.16
4769 6014 5.911752 AGTATCAGAAATGCAGAGTGGTAG 58.088 41.667 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.037847 GCAGGGATGGGCAAACCT 59.962 61.111 0.00 0.00 41.11 3.50
3 4 2.409870 CGAGCAGGGATGGGCAAAC 61.410 63.158 0.00 0.00 0.00 2.93
4 5 2.045045 CGAGCAGGGATGGGCAAA 60.045 61.111 0.00 0.00 0.00 3.68
5 6 3.329889 ACGAGCAGGGATGGGCAA 61.330 61.111 0.00 0.00 0.00 4.52
6 7 4.100084 CACGAGCAGGGATGGGCA 62.100 66.667 0.00 0.00 0.00 5.36
7 8 4.864334 CCACGAGCAGGGATGGGC 62.864 72.222 0.00 0.00 0.00 5.36
8 9 2.484287 AAACCACGAGCAGGGATGGG 62.484 60.000 0.00 0.00 36.47 4.00
9 10 1.002134 AAACCACGAGCAGGGATGG 60.002 57.895 0.00 0.00 38.26 3.51
10 11 1.926511 GCAAACCACGAGCAGGGATG 61.927 60.000 0.00 0.00 0.00 3.51
11 12 1.675641 GCAAACCACGAGCAGGGAT 60.676 57.895 0.00 0.00 0.00 3.85
12 13 2.281484 GCAAACCACGAGCAGGGA 60.281 61.111 0.00 0.00 0.00 4.20
13 14 3.365265 GGCAAACCACGAGCAGGG 61.365 66.667 0.00 0.00 35.26 4.45
14 15 3.365265 GGGCAAACCACGAGCAGG 61.365 66.667 0.00 0.00 39.85 4.85
15 16 2.594303 TGGGCAAACCACGAGCAG 60.594 61.111 0.00 0.00 46.80 4.24
23 24 4.114997 CGCGTGGATGGGCAAACC 62.115 66.667 0.00 0.00 40.81 3.27
24 25 3.039202 CTCGCGTGGATGGGCAAAC 62.039 63.158 5.77 0.00 0.00 2.93
25 26 2.745884 CTCGCGTGGATGGGCAAA 60.746 61.111 5.77 0.00 0.00 3.68
26 27 4.776322 CCTCGCGTGGATGGGCAA 62.776 66.667 22.35 0.00 0.00 4.52
69 70 1.587933 CTATCGGAGGCGACCCTAGC 61.588 65.000 0.00 0.00 43.12 3.42
70 71 0.250814 ACTATCGGAGGCGACCCTAG 60.251 60.000 0.00 0.00 43.12 3.02
71 72 0.184451 AACTATCGGAGGCGACCCTA 59.816 55.000 0.00 0.00 43.12 3.53
72 73 1.076192 AACTATCGGAGGCGACCCT 60.076 57.895 0.00 0.00 46.74 4.34
73 74 1.067582 CAACTATCGGAGGCGACCC 59.932 63.158 0.00 0.00 0.00 4.46
74 75 0.248949 GTCAACTATCGGAGGCGACC 60.249 60.000 0.00 0.00 0.00 4.79
75 76 0.454600 TGTCAACTATCGGAGGCGAC 59.545 55.000 0.00 0.00 33.29 5.19
76 77 1.337071 GATGTCAACTATCGGAGGCGA 59.663 52.381 0.00 0.00 0.00 5.54
77 78 1.338337 AGATGTCAACTATCGGAGGCG 59.662 52.381 0.00 0.00 0.00 5.52
78 79 3.305471 GGTAGATGTCAACTATCGGAGGC 60.305 52.174 0.00 0.00 0.00 4.70
79 80 4.145807 AGGTAGATGTCAACTATCGGAGG 58.854 47.826 0.00 0.00 0.00 4.30
80 81 5.049060 CAGAGGTAGATGTCAACTATCGGAG 60.049 48.000 0.00 0.00 0.00 4.63
81 82 4.822350 CAGAGGTAGATGTCAACTATCGGA 59.178 45.833 0.00 0.00 0.00 4.55
82 83 4.022762 CCAGAGGTAGATGTCAACTATCGG 60.023 50.000 0.00 0.00 0.00 4.18
83 84 4.557695 GCCAGAGGTAGATGTCAACTATCG 60.558 50.000 0.00 0.00 0.00 2.92
84 85 4.557695 CGCCAGAGGTAGATGTCAACTATC 60.558 50.000 0.00 0.00 0.00 2.08
85 86 3.319405 CGCCAGAGGTAGATGTCAACTAT 59.681 47.826 0.00 0.00 0.00 2.12
86 87 2.688446 CGCCAGAGGTAGATGTCAACTA 59.312 50.000 0.00 0.00 0.00 2.24
87 88 1.478510 CGCCAGAGGTAGATGTCAACT 59.521 52.381 0.00 0.00 0.00 3.16
88 89 1.471676 CCGCCAGAGGTAGATGTCAAC 60.472 57.143 0.00 0.00 0.00 3.18
89 90 0.824109 CCGCCAGAGGTAGATGTCAA 59.176 55.000 0.00 0.00 0.00 3.18
90 91 1.676678 GCCGCCAGAGGTAGATGTCA 61.677 60.000 0.00 0.00 0.00 3.58
91 92 1.068250 GCCGCCAGAGGTAGATGTC 59.932 63.158 0.00 0.00 0.00 3.06
92 93 2.786495 CGCCGCCAGAGGTAGATGT 61.786 63.158 0.00 0.00 0.00 3.06
93 94 2.028190 CGCCGCCAGAGGTAGATG 59.972 66.667 0.00 0.00 0.00 2.90
94 95 3.917760 GCGCCGCCAGAGGTAGAT 61.918 66.667 0.00 0.00 0.00 1.98
96 97 4.148825 AAGCGCCGCCAGAGGTAG 62.149 66.667 4.98 0.00 0.00 3.18
97 98 4.143333 GAAGCGCCGCCAGAGGTA 62.143 66.667 4.98 0.00 0.00 3.08
115 116 3.554692 CTCGCATCGTTCCCGCAC 61.555 66.667 0.00 0.00 0.00 5.34
116 117 4.812476 CCTCGCATCGTTCCCGCA 62.812 66.667 0.00 0.00 0.00 5.69
117 118 4.508128 TCCTCGCATCGTTCCCGC 62.508 66.667 0.00 0.00 0.00 6.13
118 119 2.278857 CTCCTCGCATCGTTCCCG 60.279 66.667 0.00 0.00 0.00 5.14
119 120 2.107141 CCTCCTCGCATCGTTCCC 59.893 66.667 0.00 0.00 0.00 3.97
120 121 2.107141 CCCTCCTCGCATCGTTCC 59.893 66.667 0.00 0.00 0.00 3.62
121 122 2.107141 CCCCTCCTCGCATCGTTC 59.893 66.667 0.00 0.00 0.00 3.95
122 123 2.683933 ACCCCTCCTCGCATCGTT 60.684 61.111 0.00 0.00 0.00 3.85
123 124 3.148279 GACCCCTCCTCGCATCGT 61.148 66.667 0.00 0.00 0.00 3.73
124 125 4.271816 CGACCCCTCCTCGCATCG 62.272 72.222 0.00 0.00 0.00 3.84
125 126 2.833582 TCGACCCCTCCTCGCATC 60.834 66.667 0.00 0.00 0.00 3.91
126 127 2.835431 CTCGACCCCTCCTCGCAT 60.835 66.667 0.00 0.00 0.00 4.73
127 128 4.361971 ACTCGACCCCTCCTCGCA 62.362 66.667 0.00 0.00 0.00 5.10
128 129 3.827898 CACTCGACCCCTCCTCGC 61.828 72.222 0.00 0.00 0.00 5.03
129 130 3.827898 GCACTCGACCCCTCCTCG 61.828 72.222 0.00 0.00 0.00 4.63
130 131 2.680352 TGCACTCGACCCCTCCTC 60.680 66.667 0.00 0.00 0.00 3.71
131 132 2.681778 CTGCACTCGACCCCTCCT 60.682 66.667 0.00 0.00 0.00 3.69
132 133 4.459089 GCTGCACTCGACCCCTCC 62.459 72.222 0.00 0.00 0.00 4.30
133 134 4.803426 CGCTGCACTCGACCCCTC 62.803 72.222 0.00 0.00 0.00 4.30
139 140 3.268965 GACCAGTCGCTGCACTCGA 62.269 63.158 0.00 2.51 0.00 4.04
140 141 2.807045 GACCAGTCGCTGCACTCG 60.807 66.667 0.00 0.00 0.00 4.18
141 142 2.807045 CGACCAGTCGCTGCACTC 60.807 66.667 7.33 0.00 46.50 3.51
150 151 3.827898 CCCTCCGCTCGACCAGTC 61.828 72.222 0.00 0.00 0.00 3.51
171 172 3.332493 TAGTTCGCACCGACGCCTC 62.332 63.158 0.00 0.00 34.89 4.70
172 173 3.338126 CTAGTTCGCACCGACGCCT 62.338 63.158 0.00 0.00 34.89 5.52
173 174 2.879462 CTAGTTCGCACCGACGCC 60.879 66.667 0.00 0.00 34.89 5.68
174 175 1.868251 CTCTAGTTCGCACCGACGC 60.868 63.158 0.00 0.00 34.89 5.19
175 176 1.868251 GCTCTAGTTCGCACCGACG 60.868 63.158 0.00 0.00 34.89 5.12
176 177 1.868251 CGCTCTAGTTCGCACCGAC 60.868 63.158 0.00 0.00 34.89 4.79
177 178 1.579964 TTCGCTCTAGTTCGCACCGA 61.580 55.000 0.00 0.00 0.00 4.69
178 179 1.154093 TTCGCTCTAGTTCGCACCG 60.154 57.895 0.00 0.00 0.00 4.94
179 180 1.077089 GGTTCGCTCTAGTTCGCACC 61.077 60.000 10.75 10.75 35.18 5.01
180 181 0.388134 TGGTTCGCTCTAGTTCGCAC 60.388 55.000 0.00 0.00 0.00 5.34
181 182 0.109272 CTGGTTCGCTCTAGTTCGCA 60.109 55.000 0.00 0.00 0.00 5.10
182 183 0.170561 TCTGGTTCGCTCTAGTTCGC 59.829 55.000 0.00 0.00 0.00 4.70
183 184 1.738350 TCTCTGGTTCGCTCTAGTTCG 59.262 52.381 0.00 0.00 0.00 3.95
184 185 4.379339 AATCTCTGGTTCGCTCTAGTTC 57.621 45.455 0.00 0.00 0.00 3.01
185 186 4.675671 CGAAATCTCTGGTTCGCTCTAGTT 60.676 45.833 0.00 0.00 40.04 2.24
186 187 3.181495 CGAAATCTCTGGTTCGCTCTAGT 60.181 47.826 0.00 0.00 40.04 2.57
187 188 3.367607 CGAAATCTCTGGTTCGCTCTAG 58.632 50.000 0.00 0.00 40.04 2.43
188 189 3.422417 CGAAATCTCTGGTTCGCTCTA 57.578 47.619 0.00 0.00 40.04 2.43
189 190 2.285827 CGAAATCTCTGGTTCGCTCT 57.714 50.000 0.00 0.00 40.04 4.09
194 195 1.087501 GCCCACGAAATCTCTGGTTC 58.912 55.000 0.00 0.00 0.00 3.62
195 196 0.693049 AGCCCACGAAATCTCTGGTT 59.307 50.000 0.00 0.00 0.00 3.67
196 197 0.036010 CAGCCCACGAAATCTCTGGT 60.036 55.000 0.00 0.00 0.00 4.00
197 198 1.372087 GCAGCCCACGAAATCTCTGG 61.372 60.000 0.00 0.00 0.00 3.86
198 199 1.699656 CGCAGCCCACGAAATCTCTG 61.700 60.000 0.00 0.00 0.00 3.35
199 200 1.448540 CGCAGCCCACGAAATCTCT 60.449 57.895 0.00 0.00 0.00 3.10
200 201 1.298859 AACGCAGCCCACGAAATCTC 61.299 55.000 0.00 0.00 0.00 2.75
201 202 0.889186 AAACGCAGCCCACGAAATCT 60.889 50.000 0.00 0.00 0.00 2.40
202 203 0.729140 CAAACGCAGCCCACGAAATC 60.729 55.000 0.00 0.00 0.00 2.17
203 204 1.285641 CAAACGCAGCCCACGAAAT 59.714 52.632 0.00 0.00 0.00 2.17
204 205 2.718731 CAAACGCAGCCCACGAAA 59.281 55.556 0.00 0.00 0.00 3.46
205 206 2.997952 TAGCAAACGCAGCCCACGAA 62.998 55.000 0.00 0.00 0.00 3.85
206 207 3.523087 TAGCAAACGCAGCCCACGA 62.523 57.895 0.00 0.00 0.00 4.35
207 208 3.047280 TAGCAAACGCAGCCCACG 61.047 61.111 0.00 0.00 0.00 4.94
208 209 1.515521 AAGTAGCAAACGCAGCCCAC 61.516 55.000 0.00 0.00 0.00 4.61
209 210 0.821711 AAAGTAGCAAACGCAGCCCA 60.822 50.000 0.00 0.00 0.00 5.36
210 211 0.387239 CAAAGTAGCAAACGCAGCCC 60.387 55.000 0.00 0.00 0.00 5.19
211 212 0.387239 CCAAAGTAGCAAACGCAGCC 60.387 55.000 0.00 0.00 0.00 4.85
212 213 0.310854 ACCAAAGTAGCAAACGCAGC 59.689 50.000 0.00 0.00 0.00 5.25
213 214 2.774439 AACCAAAGTAGCAAACGCAG 57.226 45.000 0.00 0.00 0.00 5.18
214 215 2.480416 CCAAACCAAAGTAGCAAACGCA 60.480 45.455 0.00 0.00 0.00 5.24
215 216 2.124122 CCAAACCAAAGTAGCAAACGC 58.876 47.619 0.00 0.00 0.00 4.84
216 217 2.738135 CCCAAACCAAAGTAGCAAACG 58.262 47.619 0.00 0.00 0.00 3.60
217 218 2.102420 AGCCCAAACCAAAGTAGCAAAC 59.898 45.455 0.00 0.00 0.00 2.93
218 219 2.102252 CAGCCCAAACCAAAGTAGCAAA 59.898 45.455 0.00 0.00 0.00 3.68
219 220 1.686052 CAGCCCAAACCAAAGTAGCAA 59.314 47.619 0.00 0.00 0.00 3.91
220 221 1.133637 TCAGCCCAAACCAAAGTAGCA 60.134 47.619 0.00 0.00 0.00 3.49
221 222 1.541588 CTCAGCCCAAACCAAAGTAGC 59.458 52.381 0.00 0.00 0.00 3.58
222 223 3.140325 TCTCAGCCCAAACCAAAGTAG 57.860 47.619 0.00 0.00 0.00 2.57
223 224 3.181434 ACATCTCAGCCCAAACCAAAGTA 60.181 43.478 0.00 0.00 0.00 2.24
224 225 2.242043 CATCTCAGCCCAAACCAAAGT 58.758 47.619 0.00 0.00 0.00 2.66
225 226 2.242043 ACATCTCAGCCCAAACCAAAG 58.758 47.619 0.00 0.00 0.00 2.77
226 227 2.380064 ACATCTCAGCCCAAACCAAA 57.620 45.000 0.00 0.00 0.00 3.28
227 228 3.737559 ATACATCTCAGCCCAAACCAA 57.262 42.857 0.00 0.00 0.00 3.67
228 229 6.508030 TTATATACATCTCAGCCCAAACCA 57.492 37.500 0.00 0.00 0.00 3.67
229 230 8.409358 AATTTATATACATCTCAGCCCAAACC 57.591 34.615 0.00 0.00 0.00 3.27
273 274 3.596214 CCTATGTATGCACGGGAATACC 58.404 50.000 13.44 0.00 35.00 2.73
274 275 3.000727 GCCTATGTATGCACGGGAATAC 58.999 50.000 9.04 9.04 36.25 1.89
275 276 2.635427 TGCCTATGTATGCACGGGAATA 59.365 45.455 7.81 0.00 31.31 1.75
276 277 1.419762 TGCCTATGTATGCACGGGAAT 59.580 47.619 7.81 0.00 31.31 3.01
277 278 0.833949 TGCCTATGTATGCACGGGAA 59.166 50.000 7.81 0.00 31.31 3.97
278 279 1.055849 ATGCCTATGTATGCACGGGA 58.944 50.000 7.81 3.35 40.88 5.14
279 280 2.289382 TGTATGCCTATGTATGCACGGG 60.289 50.000 0.00 2.14 40.88 5.28
280 281 2.736721 GTGTATGCCTATGTATGCACGG 59.263 50.000 0.00 0.00 39.49 4.94
282 283 4.319766 GCAAGTGTATGCCTATGTATGCAC 60.320 45.833 8.65 8.65 45.72 4.57
283 284 3.814842 GCAAGTGTATGCCTATGTATGCA 59.185 43.478 0.00 0.00 40.49 3.96
284 285 4.410492 GCAAGTGTATGCCTATGTATGC 57.590 45.455 0.00 0.00 40.49 3.14
294 295 4.536687 GCGGCGGCAAGTGTATGC 62.537 66.667 9.78 0.00 45.67 3.14
295 296 3.876198 GGCGGCGGCAAGTGTATG 61.876 66.667 29.41 0.00 42.47 2.39
296 297 4.402528 TGGCGGCGGCAAGTGTAT 62.403 61.111 34.45 0.00 42.47 2.29
305 306 4.690719 TGTTACCAGTGGCGGCGG 62.691 66.667 9.78 1.54 0.00 6.13
306 307 2.038269 ATTGTTACCAGTGGCGGCG 61.038 57.895 9.78 0.51 0.00 6.46
307 308 1.506262 CATTGTTACCAGTGGCGGC 59.494 57.895 9.78 0.00 0.00 6.53
308 309 1.240641 TGCATTGTTACCAGTGGCGG 61.241 55.000 9.78 0.00 0.00 6.13
309 310 0.810648 ATGCATTGTTACCAGTGGCG 59.189 50.000 9.78 0.00 0.00 5.69
310 311 3.381272 ACATATGCATTGTTACCAGTGGC 59.619 43.478 9.78 0.00 0.00 5.01
311 312 5.581126 AACATATGCATTGTTACCAGTGG 57.419 39.130 19.19 7.91 35.61 4.00
312 313 7.929159 TGATAACATATGCATTGTTACCAGTG 58.071 34.615 24.15 8.10 41.08 3.66
313 314 8.158169 CTGATAACATATGCATTGTTACCAGT 57.842 34.615 27.39 17.56 42.49 4.00
315 316 8.518430 AACTGATAACATATGCATTGTTACCA 57.482 30.769 24.15 21.66 41.08 3.25
343 344 9.570468 CTAGTACCCACTATGAAGATAGTAACA 57.430 37.037 0.00 0.00 42.55 2.41
344 345 9.571816 ACTAGTACCCACTATGAAGATAGTAAC 57.428 37.037 0.00 0.00 42.55 2.50
373 374 9.440773 ACAAATGACGACTTGCATGATATATAT 57.559 29.630 6.60 0.00 0.00 0.86
374 375 8.831715 ACAAATGACGACTTGCATGATATATA 57.168 30.769 6.60 0.00 0.00 0.86
375 376 7.734924 ACAAATGACGACTTGCATGATATAT 57.265 32.000 6.60 0.00 0.00 0.86
376 377 7.552458 AACAAATGACGACTTGCATGATATA 57.448 32.000 6.60 0.00 0.00 0.86
377 378 6.441093 AACAAATGACGACTTGCATGATAT 57.559 33.333 6.60 0.00 0.00 1.63
378 379 5.878332 AACAAATGACGACTTGCATGATA 57.122 34.783 6.60 0.00 0.00 2.15
379 380 4.771590 AACAAATGACGACTTGCATGAT 57.228 36.364 6.60 0.00 0.00 2.45
380 381 5.468409 TCTTAACAAATGACGACTTGCATGA 59.532 36.000 6.60 0.00 0.00 3.07
381 382 5.688823 TCTTAACAAATGACGACTTGCATG 58.311 37.500 0.00 0.00 0.00 4.06
382 383 5.940192 TCTTAACAAATGACGACTTGCAT 57.060 34.783 0.00 0.00 0.00 3.96
383 384 5.238432 ACATCTTAACAAATGACGACTTGCA 59.762 36.000 0.00 0.00 0.00 4.08
384 385 5.689819 ACATCTTAACAAATGACGACTTGC 58.310 37.500 0.00 0.00 0.00 4.01
401 402 9.872684 AACCCAATGAGAATGAATATACATCTT 57.127 29.630 0.00 0.00 0.00 2.40
402 403 9.293404 CAACCCAATGAGAATGAATATACATCT 57.707 33.333 0.00 0.00 0.00 2.90
403 404 9.071276 ACAACCCAATGAGAATGAATATACATC 57.929 33.333 0.00 0.00 0.00 3.06
404 405 8.853126 CACAACCCAATGAGAATGAATATACAT 58.147 33.333 0.00 0.00 0.00 2.29
405 406 7.833682 ACACAACCCAATGAGAATGAATATACA 59.166 33.333 0.00 0.00 0.00 2.29
406 407 8.225603 ACACAACCCAATGAGAATGAATATAC 57.774 34.615 0.00 0.00 0.00 1.47
407 408 8.821686 AACACAACCCAATGAGAATGAATATA 57.178 30.769 0.00 0.00 0.00 0.86
408 409 7.722949 AACACAACCCAATGAGAATGAATAT 57.277 32.000 0.00 0.00 0.00 1.28
409 410 7.148323 CGTAACACAACCCAATGAGAATGAATA 60.148 37.037 0.00 0.00 0.00 1.75
410 411 6.349280 CGTAACACAACCCAATGAGAATGAAT 60.349 38.462 0.00 0.00 0.00 2.57
411 412 5.049060 CGTAACACAACCCAATGAGAATGAA 60.049 40.000 0.00 0.00 0.00 2.57
412 413 4.454161 CGTAACACAACCCAATGAGAATGA 59.546 41.667 0.00 0.00 0.00 2.57
413 414 4.722194 CGTAACACAACCCAATGAGAATG 58.278 43.478 0.00 0.00 0.00 2.67
414 415 3.190535 GCGTAACACAACCCAATGAGAAT 59.809 43.478 0.00 0.00 0.00 2.40
415 416 2.550606 GCGTAACACAACCCAATGAGAA 59.449 45.455 0.00 0.00 0.00 2.87
416 417 2.147958 GCGTAACACAACCCAATGAGA 58.852 47.619 0.00 0.00 0.00 3.27
417 418 2.151202 AGCGTAACACAACCCAATGAG 58.849 47.619 0.00 0.00 0.00 2.90
418 419 2.264005 AGCGTAACACAACCCAATGA 57.736 45.000 0.00 0.00 0.00 2.57
419 420 3.071479 AGTAGCGTAACACAACCCAATG 58.929 45.455 0.00 0.00 0.00 2.82
420 421 3.412237 AGTAGCGTAACACAACCCAAT 57.588 42.857 0.00 0.00 0.00 3.16
421 422 2.914695 AGTAGCGTAACACAACCCAA 57.085 45.000 0.00 0.00 0.00 4.12
422 423 2.102757 TGAAGTAGCGTAACACAACCCA 59.897 45.455 0.00 0.00 0.00 4.51
423 424 2.758009 TGAAGTAGCGTAACACAACCC 58.242 47.619 0.00 0.00 0.00 4.11
424 425 4.034279 TGTTTGAAGTAGCGTAACACAACC 59.966 41.667 0.00 0.00 0.00 3.77
425 426 4.959757 GTGTTTGAAGTAGCGTAACACAAC 59.040 41.667 10.52 0.00 44.77 3.32
426 427 4.871557 AGTGTTTGAAGTAGCGTAACACAA 59.128 37.500 15.95 0.00 46.69 3.33
427 428 4.435425 AGTGTTTGAAGTAGCGTAACACA 58.565 39.130 15.95 0.00 46.69 3.72
428 429 5.195379 CAAGTGTTTGAAGTAGCGTAACAC 58.805 41.667 0.00 0.00 45.39 3.32
429 430 4.271533 CCAAGTGTTTGAAGTAGCGTAACA 59.728 41.667 0.00 0.00 36.36 2.41
430 431 4.769215 CCAAGTGTTTGAAGTAGCGTAAC 58.231 43.478 0.00 0.00 36.36 2.50
431 432 3.249080 GCCAAGTGTTTGAAGTAGCGTAA 59.751 43.478 0.00 0.00 36.36 3.18
432 433 2.803956 GCCAAGTGTTTGAAGTAGCGTA 59.196 45.455 0.00 0.00 36.36 4.42
433 434 1.602377 GCCAAGTGTTTGAAGTAGCGT 59.398 47.619 0.00 0.00 36.36 5.07
434 435 1.873591 AGCCAAGTGTTTGAAGTAGCG 59.126 47.619 0.00 0.00 36.36 4.26
435 436 3.315191 TGAAGCCAAGTGTTTGAAGTAGC 59.685 43.478 0.00 0.00 36.36 3.58
436 437 4.335315 TGTGAAGCCAAGTGTTTGAAGTAG 59.665 41.667 0.00 0.00 36.36 2.57
437 438 4.265893 TGTGAAGCCAAGTGTTTGAAGTA 58.734 39.130 0.00 0.00 36.36 2.24
438 439 3.088532 TGTGAAGCCAAGTGTTTGAAGT 58.911 40.909 0.00 0.00 36.36 3.01
439 440 3.781079 TGTGAAGCCAAGTGTTTGAAG 57.219 42.857 0.00 0.00 36.36 3.02
440 441 4.734398 AATGTGAAGCCAAGTGTTTGAA 57.266 36.364 0.00 0.00 36.36 2.69
441 442 5.359576 AGTTAATGTGAAGCCAAGTGTTTGA 59.640 36.000 0.00 0.00 36.36 2.69
442 443 5.591099 AGTTAATGTGAAGCCAAGTGTTTG 58.409 37.500 0.00 0.00 0.00 2.93
443 444 5.852282 AGTTAATGTGAAGCCAAGTGTTT 57.148 34.783 0.00 0.00 0.00 2.83
444 445 5.825679 TGTAGTTAATGTGAAGCCAAGTGTT 59.174 36.000 0.00 0.00 0.00 3.32
445 446 5.238650 GTGTAGTTAATGTGAAGCCAAGTGT 59.761 40.000 0.00 0.00 0.00 3.55
446 447 5.238432 TGTGTAGTTAATGTGAAGCCAAGTG 59.762 40.000 0.00 0.00 0.00 3.16
447 448 5.373222 TGTGTAGTTAATGTGAAGCCAAGT 58.627 37.500 0.00 0.00 0.00 3.16
448 449 5.940192 TGTGTAGTTAATGTGAAGCCAAG 57.060 39.130 0.00 0.00 0.00 3.61
449 450 5.335583 GCATGTGTAGTTAATGTGAAGCCAA 60.336 40.000 0.00 0.00 0.00 4.52
450 451 4.155826 GCATGTGTAGTTAATGTGAAGCCA 59.844 41.667 0.00 0.00 0.00 4.75
451 452 4.438744 GGCATGTGTAGTTAATGTGAAGCC 60.439 45.833 0.00 0.00 0.00 4.35
452 453 4.155826 TGGCATGTGTAGTTAATGTGAAGC 59.844 41.667 0.00 0.00 0.00 3.86
453 454 5.643348 TCTGGCATGTGTAGTTAATGTGAAG 59.357 40.000 0.00 0.00 0.00 3.02
454 455 5.555966 TCTGGCATGTGTAGTTAATGTGAA 58.444 37.500 0.00 0.00 0.00 3.18
455 456 5.159273 TCTGGCATGTGTAGTTAATGTGA 57.841 39.130 0.00 0.00 0.00 3.58
456 457 7.280876 ACTTATCTGGCATGTGTAGTTAATGTG 59.719 37.037 0.00 0.00 0.00 3.21
457 458 7.338710 ACTTATCTGGCATGTGTAGTTAATGT 58.661 34.615 0.00 0.00 0.00 2.71
458 459 7.792374 ACTTATCTGGCATGTGTAGTTAATG 57.208 36.000 0.00 0.00 0.00 1.90
459 460 9.899661 TTTACTTATCTGGCATGTGTAGTTAAT 57.100 29.630 0.00 0.00 0.00 1.40
460 461 9.158233 GTTTACTTATCTGGCATGTGTAGTTAA 57.842 33.333 0.00 0.00 0.00 2.01
461 462 8.537016 AGTTTACTTATCTGGCATGTGTAGTTA 58.463 33.333 0.00 0.00 0.00 2.24
462 463 7.394816 AGTTTACTTATCTGGCATGTGTAGTT 58.605 34.615 0.00 0.00 0.00 2.24
463 464 6.947464 AGTTTACTTATCTGGCATGTGTAGT 58.053 36.000 0.00 0.00 0.00 2.73
464 465 7.334421 ACAAGTTTACTTATCTGGCATGTGTAG 59.666 37.037 0.00 0.00 34.28 2.74
465 466 7.165485 ACAAGTTTACTTATCTGGCATGTGTA 58.835 34.615 0.00 0.00 34.28 2.90
466 467 6.003950 ACAAGTTTACTTATCTGGCATGTGT 58.996 36.000 0.00 0.00 34.28 3.72
467 468 6.500684 ACAAGTTTACTTATCTGGCATGTG 57.499 37.500 0.00 0.00 34.28 3.21
468 469 6.942576 AGAACAAGTTTACTTATCTGGCATGT 59.057 34.615 8.48 0.00 33.08 3.21
469 470 7.119699 TCAGAACAAGTTTACTTATCTGGCATG 59.880 37.037 23.38 0.00 42.81 4.06
470 471 7.168219 TCAGAACAAGTTTACTTATCTGGCAT 58.832 34.615 23.38 1.81 42.81 4.40
471 472 6.530120 TCAGAACAAGTTTACTTATCTGGCA 58.470 36.000 23.38 12.17 42.81 4.92
472 473 6.874134 TCTCAGAACAAGTTTACTTATCTGGC 59.126 38.462 23.38 3.65 42.81 4.85
473 474 8.877779 CATCTCAGAACAAGTTTACTTATCTGG 58.122 37.037 23.38 17.96 42.81 3.86
474 475 9.429359 ACATCTCAGAACAAGTTTACTTATCTG 57.571 33.333 20.60 20.60 43.32 2.90
475 476 9.429359 CACATCTCAGAACAAGTTTACTTATCT 57.571 33.333 0.00 0.42 33.97 1.98
476 477 9.209175 ACACATCTCAGAACAAGTTTACTTATC 57.791 33.333 0.00 0.00 34.28 1.75
477 478 9.561069 AACACATCTCAGAACAAGTTTACTTAT 57.439 29.630 0.00 0.00 34.28 1.73
478 479 8.958119 AACACATCTCAGAACAAGTTTACTTA 57.042 30.769 0.00 0.00 34.28 2.24
479 480 7.865706 AACACATCTCAGAACAAGTTTACTT 57.134 32.000 0.00 0.00 36.45 2.24
480 481 8.993121 CATAACACATCTCAGAACAAGTTTACT 58.007 33.333 0.00 0.00 0.00 2.24
481 482 8.774586 ACATAACACATCTCAGAACAAGTTTAC 58.225 33.333 0.00 0.00 0.00 2.01
482 483 8.902540 ACATAACACATCTCAGAACAAGTTTA 57.097 30.769 0.00 0.00 0.00 2.01
483 484 7.807977 ACATAACACATCTCAGAACAAGTTT 57.192 32.000 0.00 0.00 0.00 2.66
484 485 7.807977 AACATAACACATCTCAGAACAAGTT 57.192 32.000 0.00 0.00 0.00 2.66
485 486 8.150945 AGTAACATAACACATCTCAGAACAAGT 58.849 33.333 0.00 0.00 0.00 3.16
486 487 8.539770 AGTAACATAACACATCTCAGAACAAG 57.460 34.615 0.00 0.00 0.00 3.16
487 488 7.328493 CGAGTAACATAACACATCTCAGAACAA 59.672 37.037 0.00 0.00 0.00 2.83
488 489 6.806739 CGAGTAACATAACACATCTCAGAACA 59.193 38.462 0.00 0.00 0.00 3.18
489 490 6.237595 GCGAGTAACATAACACATCTCAGAAC 60.238 42.308 0.00 0.00 0.00 3.01
490 491 5.805486 GCGAGTAACATAACACATCTCAGAA 59.195 40.000 0.00 0.00 0.00 3.02
491 492 5.125578 AGCGAGTAACATAACACATCTCAGA 59.874 40.000 0.00 0.00 0.00 3.27
492 493 5.344066 AGCGAGTAACATAACACATCTCAG 58.656 41.667 0.00 0.00 0.00 3.35
493 494 5.324784 AGCGAGTAACATAACACATCTCA 57.675 39.130 0.00 0.00 0.00 3.27
494 495 6.973474 ACTTAGCGAGTAACATAACACATCTC 59.027 38.462 0.00 0.00 36.65 2.75
495 496 6.864342 ACTTAGCGAGTAACATAACACATCT 58.136 36.000 0.00 0.00 36.65 2.90
496 497 7.521509 AACTTAGCGAGTAACATAACACATC 57.478 36.000 0.00 0.00 37.72 3.06
497 498 7.222224 GCTAACTTAGCGAGTAACATAACACAT 59.778 37.037 5.03 0.00 42.62 3.21
498 499 6.529125 GCTAACTTAGCGAGTAACATAACACA 59.471 38.462 5.03 0.00 42.62 3.72
499 500 6.920254 GCTAACTTAGCGAGTAACATAACAC 58.080 40.000 5.03 0.00 42.62 3.32
514 515 5.978322 GTCCGTCCTTAATCTGCTAACTTAG 59.022 44.000 0.00 0.00 0.00 2.18
515 516 5.449588 CGTCCGTCCTTAATCTGCTAACTTA 60.450 44.000 0.00 0.00 0.00 2.24
516 517 4.677250 CGTCCGTCCTTAATCTGCTAACTT 60.677 45.833 0.00 0.00 0.00 2.66
517 518 3.181489 CGTCCGTCCTTAATCTGCTAACT 60.181 47.826 0.00 0.00 0.00 2.24
518 519 3.114065 CGTCCGTCCTTAATCTGCTAAC 58.886 50.000 0.00 0.00 0.00 2.34
519 520 2.480759 GCGTCCGTCCTTAATCTGCTAA 60.481 50.000 0.00 0.00 0.00 3.09
520 521 1.066605 GCGTCCGTCCTTAATCTGCTA 59.933 52.381 0.00 0.00 0.00 3.49
521 522 0.179108 GCGTCCGTCCTTAATCTGCT 60.179 55.000 0.00 0.00 0.00 4.24
522 523 1.480219 CGCGTCCGTCCTTAATCTGC 61.480 60.000 0.00 0.00 0.00 4.26
523 524 1.480219 GCGCGTCCGTCCTTAATCTG 61.480 60.000 8.43 0.00 36.67 2.90
524 525 1.226888 GCGCGTCCGTCCTTAATCT 60.227 57.895 8.43 0.00 36.67 2.40
525 526 1.480219 CTGCGCGTCCGTCCTTAATC 61.480 60.000 8.43 0.00 36.67 1.75
526 527 1.518572 CTGCGCGTCCGTCCTTAAT 60.519 57.895 8.43 0.00 36.67 1.40
527 528 2.126228 CTGCGCGTCCGTCCTTAA 60.126 61.111 8.43 0.00 36.67 1.85
528 529 3.332493 GACTGCGCGTCCGTCCTTA 62.332 63.158 17.73 0.00 36.62 2.69
529 530 4.719369 GACTGCGCGTCCGTCCTT 62.719 66.667 17.73 0.00 36.62 3.36
538 539 4.717629 TTCTGGACCGACTGCGCG 62.718 66.667 0.00 0.00 35.83 6.86
539 540 1.503818 TTTTTCTGGACCGACTGCGC 61.504 55.000 0.00 0.00 35.83 6.09
540 541 0.512952 CTTTTTCTGGACCGACTGCG 59.487 55.000 0.00 0.00 37.24 5.18
541 542 1.878953 TCTTTTTCTGGACCGACTGC 58.121 50.000 0.00 0.00 0.00 4.40
542 543 3.728845 TCTTCTTTTTCTGGACCGACTG 58.271 45.455 0.00 0.00 0.00 3.51
543 544 4.127907 GTTCTTCTTTTTCTGGACCGACT 58.872 43.478 0.00 0.00 0.00 4.18
544 545 4.127907 AGTTCTTCTTTTTCTGGACCGAC 58.872 43.478 0.00 0.00 0.00 4.79
545 546 4.417426 AGTTCTTCTTTTTCTGGACCGA 57.583 40.909 0.00 0.00 0.00 4.69
546 547 5.297029 AGAAAGTTCTTCTTTTTCTGGACCG 59.703 40.000 0.00 0.00 45.15 4.79
547 548 6.701145 AGAAAGTTCTTCTTTTTCTGGACC 57.299 37.500 0.00 0.00 45.15 4.46
552 553 9.578439 CATTTGTCAGAAAGTTCTTCTTTTTCT 57.422 29.630 0.00 0.00 45.15 2.52
553 554 8.323854 GCATTTGTCAGAAAGTTCTTCTTTTTC 58.676 33.333 0.00 0.00 45.15 2.29
554 555 7.278646 GGCATTTGTCAGAAAGTTCTTCTTTTT 59.721 33.333 0.00 0.00 45.15 1.94
555 556 6.758416 GGCATTTGTCAGAAAGTTCTTCTTTT 59.242 34.615 0.00 0.00 45.15 2.27
557 558 5.595952 AGGCATTTGTCAGAAAGTTCTTCTT 59.404 36.000 0.00 0.00 34.74 2.52
558 559 5.136105 AGGCATTTGTCAGAAAGTTCTTCT 58.864 37.500 0.00 0.00 34.74 2.85
559 560 5.444663 AGGCATTTGTCAGAAAGTTCTTC 57.555 39.130 0.00 0.00 34.74 2.87
560 561 5.859205 AAGGCATTTGTCAGAAAGTTCTT 57.141 34.783 0.00 0.00 34.74 2.52
561 562 5.859205 AAAGGCATTTGTCAGAAAGTTCT 57.141 34.783 0.00 0.00 38.25 3.01
738 739 2.364324 CGATCTGGGGGTTTCTCGATTA 59.636 50.000 0.00 0.00 0.00 1.75
739 740 1.139058 CGATCTGGGGGTTTCTCGATT 59.861 52.381 0.00 0.00 0.00 3.34
740 741 0.753262 CGATCTGGGGGTTTCTCGAT 59.247 55.000 0.00 0.00 0.00 3.59
741 742 1.327690 CCGATCTGGGGGTTTCTCGA 61.328 60.000 0.00 0.00 0.00 4.04
742 743 1.144057 CCGATCTGGGGGTTTCTCG 59.856 63.158 0.00 0.00 0.00 4.04
752 753 3.589988 CGATATTTCCTTCCCGATCTGG 58.410 50.000 0.00 0.00 37.55 3.86
753 754 3.258372 TCCGATATTTCCTTCCCGATCTG 59.742 47.826 0.00 0.00 0.00 2.90
788 789 3.661944 GGTCACGTCGGATAGAGATAGA 58.338 50.000 0.00 0.00 0.00 1.98
790 791 2.410939 CGGTCACGTCGGATAGAGATA 58.589 52.381 0.00 0.00 34.81 1.98
791 792 1.227639 CGGTCACGTCGGATAGAGAT 58.772 55.000 0.00 0.00 34.81 2.75
792 793 1.434622 GCGGTCACGTCGGATAGAGA 61.435 60.000 0.00 0.00 43.45 3.10
794 795 1.746239 TGCGGTCACGTCGGATAGA 60.746 57.895 0.00 0.00 43.45 1.98
796 797 2.486504 GTGCGGTCACGTCGGATA 59.513 61.111 0.00 0.00 43.45 2.59
797 798 4.430765 GGTGCGGTCACGTCGGAT 62.431 66.667 0.00 0.00 44.03 4.18
839 840 1.813337 GCTCTTGAAGCGAGCCCTC 60.813 63.158 0.74 0.00 46.22 4.30
840 841 2.267324 GCTCTTGAAGCGAGCCCT 59.733 61.111 0.74 0.00 46.22 5.19
867 868 2.490148 TACATGGGCCGCGAGAGAG 61.490 63.158 8.23 0.00 0.00 3.20
868 869 2.441348 TACATGGGCCGCGAGAGA 60.441 61.111 8.23 0.00 0.00 3.10
869 870 2.279517 GTACATGGGCCGCGAGAG 60.280 66.667 8.23 0.00 0.00 3.20
870 871 3.845259 GGTACATGGGCCGCGAGA 61.845 66.667 8.23 0.00 0.00 4.04
893 894 1.142965 GAGAAGAAGAGGCGAGGGC 59.857 63.158 0.00 0.00 38.90 5.19
896 906 1.330521 CGAGAGAGAAGAAGAGGCGAG 59.669 57.143 0.00 0.00 0.00 5.03
899 909 0.248458 CGCGAGAGAGAAGAAGAGGC 60.248 60.000 0.00 0.00 0.00 4.70
908 918 3.971109 TTCCGAGCCGCGAGAGAGA 62.971 63.158 8.23 0.00 44.57 3.10
916 927 1.863662 TAGATCCGATTCCGAGCCGC 61.864 60.000 0.00 0.00 38.22 6.53
929 942 0.109039 GCTCGCCGGAATCTAGATCC 60.109 60.000 5.05 8.23 0.00 3.36
932 945 1.525306 TCGCTCGCCGGAATCTAGA 60.525 57.895 5.05 0.00 37.59 2.43
934 947 2.719979 GTCGCTCGCCGGAATCTA 59.280 61.111 5.05 0.00 37.59 1.98
950 963 2.365586 CCTCTGCTGCTGCTAGGGT 61.366 63.158 21.77 0.00 38.51 4.34
1133 1156 1.403687 ATTGGTAGCGAGAGGGGAGC 61.404 60.000 0.00 0.00 0.00 4.70
1187 1213 4.824515 ACGGCGGGGAGAGAGAGG 62.825 72.222 13.24 0.00 0.00 3.69
1188 1214 3.213402 GACGGCGGGGAGAGAGAG 61.213 72.222 13.24 0.00 0.00 3.20
1320 1346 1.341187 GGACGGAAGAGGAGGAGAAGA 60.341 57.143 0.00 0.00 0.00 2.87
1327 1353 1.066587 GCATCGGACGGAAGAGGAG 59.933 63.158 0.00 0.00 0.00 3.69
1330 1357 2.278857 CGGCATCGGACGGAAGAG 60.279 66.667 0.00 0.00 43.57 2.85
1365 1392 4.012554 CGTCAGACACAACACGCT 57.987 55.556 0.41 0.00 0.00 5.07
1367 1394 1.151777 AAGGCGTCAGACACAACACG 61.152 55.000 0.41 0.00 35.32 4.49
1368 1395 0.304705 CAAGGCGTCAGACACAACAC 59.695 55.000 0.41 0.00 0.00 3.32
1376 1403 1.959226 GCCGAAACAAGGCGTCAGA 60.959 57.895 0.00 0.00 45.58 3.27
1398 1425 2.819595 CCGTGATGGGGAACTGCG 60.820 66.667 0.00 0.00 0.00 5.18
1420 1447 0.670706 TGAGGATCTTGATCTCGCGG 59.329 55.000 6.13 0.00 34.92 6.46
1498 1525 4.767255 GGGGTCAGTCCAGCGCAG 62.767 72.222 11.47 0.00 38.11 5.18
1506 1534 1.904990 GAGGGAGCTTGGGGTCAGTC 61.905 65.000 0.00 0.00 41.29 3.51
1508 1536 1.492133 TTGAGGGAGCTTGGGGTCAG 61.492 60.000 0.00 0.00 41.29 3.51
1510 1538 0.332972 AATTGAGGGAGCTTGGGGTC 59.667 55.000 0.00 0.00 39.05 4.46
1518 1546 2.580962 GAGGGAATGAATTGAGGGAGC 58.419 52.381 0.00 0.00 0.00 4.70
1600 1628 8.995220 GTCAGTAGAGAGAATAGAACGACATAT 58.005 37.037 0.00 0.00 0.00 1.78
1601 1629 7.169476 CGTCAGTAGAGAGAATAGAACGACATA 59.831 40.741 0.00 0.00 0.00 2.29
1602 1630 6.018588 CGTCAGTAGAGAGAATAGAACGACAT 60.019 42.308 0.00 0.00 0.00 3.06
1603 1631 5.291371 CGTCAGTAGAGAGAATAGAACGACA 59.709 44.000 0.00 0.00 0.00 4.35
1604 1632 5.276963 CCGTCAGTAGAGAGAATAGAACGAC 60.277 48.000 0.00 0.00 0.00 4.34
1605 1633 4.809958 CCGTCAGTAGAGAGAATAGAACGA 59.190 45.833 0.00 0.00 0.00 3.85
1606 1634 4.809958 TCCGTCAGTAGAGAGAATAGAACG 59.190 45.833 0.00 0.00 0.00 3.95
1607 1635 5.237779 CCTCCGTCAGTAGAGAGAATAGAAC 59.762 48.000 0.00 0.00 31.43 3.01
1608 1636 5.130643 TCCTCCGTCAGTAGAGAGAATAGAA 59.869 44.000 0.00 0.00 31.43 2.10
1620 1648 2.022195 CGAATTCCTCCTCCGTCAGTA 58.978 52.381 0.00 0.00 0.00 2.74
1627 1655 1.867865 GAATTCGCGAATTCCTCCTCC 59.132 52.381 43.53 28.09 46.68 4.30
1705 1733 2.907910 AAGCACTAGAATTGCAAGCG 57.092 45.000 4.94 0.00 42.83 4.68
1760 1800 2.092882 GCGTCACGACCTTACAGGC 61.093 63.158 0.00 0.00 39.63 4.85
1761 1801 1.445582 GGCGTCACGACCTTACAGG 60.446 63.158 0.00 0.00 42.49 4.00
1822 1866 2.270352 TGCTCCCCTTGTACTTGTTG 57.730 50.000 0.00 0.00 0.00 3.33
1942 1992 0.937699 TCGCAGAAACCGAGTGAACG 60.938 55.000 0.00 0.00 0.00 3.95
1949 1999 0.323629 AGGGAAATCGCAGAAACCGA 59.676 50.000 0.14 0.00 43.58 4.69
1953 2003 3.367292 GCATCAAAGGGAAATCGCAGAAA 60.367 43.478 0.14 0.00 43.58 2.52
2000 2055 2.768527 ACACCAGACGAGATCAATCCAT 59.231 45.455 0.00 0.00 0.00 3.41
2023 2080 3.244353 ACTGGACCAAGACAAGATCACAG 60.244 47.826 0.00 0.00 0.00 3.66
2137 3240 2.312722 TGAAAAACTCCGGTCGTGAA 57.687 45.000 0.00 0.00 0.00 3.18
2142 3245 5.401376 GCAAACTTTATGAAAAACTCCGGTC 59.599 40.000 0.00 0.00 0.00 4.79
2156 3259 4.648651 ACAAGGTACCTCGCAAACTTTAT 58.351 39.130 16.64 0.00 0.00 1.40
2181 3284 2.076100 CACATTAGCTCAGCAAACGGA 58.924 47.619 0.00 0.00 0.00 4.69
2183 3286 3.058983 TCAACACATTAGCTCAGCAAACG 60.059 43.478 0.00 0.00 0.00 3.60
2185 3288 4.616604 GCATCAACACATTAGCTCAGCAAA 60.617 41.667 0.00 0.00 0.00 3.68
2199 3302 0.961019 TGCAAGGGAAGCATCAACAC 59.039 50.000 0.00 0.00 37.02 3.32
2260 3364 1.446618 CGCAAGCCCAAAATCAGCC 60.447 57.895 0.00 0.00 0.00 4.85
2284 3388 4.507710 TGCCATTGTGATCACTAGAGAAC 58.492 43.478 25.55 10.35 0.00 3.01
2401 3506 5.518487 AGTCAAATAAAAGGCAACAAACGTG 59.482 36.000 0.00 0.00 41.41 4.49
2402 3507 5.656480 AGTCAAATAAAAGGCAACAAACGT 58.344 33.333 0.00 0.00 41.41 3.99
2518 3631 6.389830 TTGAGAAGCTCAGCAAAAATACAA 57.610 33.333 0.00 0.00 41.75 2.41
2604 3717 9.461312 TCAAATGCTTAGGTTATACACTTGATT 57.539 29.630 0.00 0.00 0.00 2.57
2652 3765 5.064962 ACGGCTATATCTATAACTCGAGTGC 59.935 44.000 20.85 13.42 0.00 4.40
2697 3810 1.867233 CCGGCTGCAGTAATGACATAC 59.133 52.381 16.64 0.00 0.00 2.39
2702 3815 1.153369 GCTCCGGCTGCAGTAATGA 60.153 57.895 16.64 6.40 35.22 2.57
2791 3904 2.949644 AGGCTTGAAGTTGTTGTACCAC 59.050 45.455 0.00 0.00 0.00 4.16
2887 4000 1.150827 CAGCGACATGAGACAAAGCA 58.849 50.000 0.00 0.00 0.00 3.91
2895 4008 1.016130 GTGACCACCAGCGACATGAG 61.016 60.000 0.00 0.00 0.00 2.90
2916 4029 6.507771 CGGTCAAAACTGCAAACACATAAAAG 60.508 38.462 0.00 0.00 0.00 2.27
3033 4221 1.377229 CACGGGCCCAAGGAGTTAA 59.623 57.895 24.92 0.00 0.00 2.01
3034 4222 0.544833 TACACGGGCCCAAGGAGTTA 60.545 55.000 24.92 3.88 0.00 2.24
3035 4223 1.205460 ATACACGGGCCCAAGGAGTT 61.205 55.000 24.92 4.82 0.00 3.01
3036 4224 1.615424 ATACACGGGCCCAAGGAGT 60.615 57.895 24.92 12.95 0.00 3.85
3038 4226 0.986019 ATCATACACGGGCCCAAGGA 60.986 55.000 24.92 10.78 0.00 3.36
3040 4228 2.631160 TTATCATACACGGGCCCAAG 57.369 50.000 24.92 16.26 0.00 3.61
3067 4264 4.279169 TGAGGAGTGAAAAGCAAAGAATGG 59.721 41.667 0.00 0.00 0.00 3.16
3084 4281 9.403110 CAATTTAAGAGTGAATTTGTTGAGGAG 57.597 33.333 0.00 0.00 0.00 3.69
3085 4282 8.912988 ACAATTTAAGAGTGAATTTGTTGAGGA 58.087 29.630 0.00 0.00 30.23 3.71
3086 4283 9.533253 AACAATTTAAGAGTGAATTTGTTGAGG 57.467 29.630 7.29 0.00 38.21 3.86
3190 4390 9.787435 AGTATAATAAAAACAGTGACCAGAACA 57.213 29.630 0.00 0.00 0.00 3.18
3197 4397 8.512138 ACTTGGCAGTATAATAAAAACAGTGAC 58.488 33.333 0.00 0.00 0.00 3.67
3245 4445 4.065088 GGTCATGACACAACTTAGCTCAA 58.935 43.478 26.47 0.00 0.00 3.02
3304 4513 1.398390 GTCTGGAATTCGTGTGATGCC 59.602 52.381 0.00 0.00 0.00 4.40
3479 4688 0.459585 GGTTTCGCATAGTGGCTCGA 60.460 55.000 0.00 0.00 0.00 4.04
3502 4711 2.042261 TTAGGCCCTCCAGGTCCC 59.958 66.667 0.00 0.00 43.64 4.46
3580 4789 2.593978 CTGCCATAGCCACTGCCT 59.406 61.111 0.00 0.00 38.69 4.75
3595 4804 3.506059 CTGAGGATACGGGGCGCTG 62.506 68.421 7.64 8.27 46.39 5.18
3667 4876 1.227380 GACTCCATAGCCACTGCCG 60.227 63.158 0.00 0.00 38.69 5.69
3676 4885 1.622607 TTGGGCCACCGACTCCATAG 61.623 60.000 5.23 0.00 40.75 2.23
3688 4897 0.252012 CTGGTGGGTAATTTGGGCCA 60.252 55.000 0.00 0.00 0.00 5.36
3691 4900 1.319614 CGCCTGGTGGGTAATTTGGG 61.320 60.000 0.00 0.00 37.43 4.12
3718 4927 0.460284 CTGGACCAGACGTGCCATAC 60.460 60.000 17.22 0.00 32.44 2.39
3751 4960 2.093447 AGAACCGCCTTGAGGATAGTTG 60.093 50.000 0.06 0.00 37.39 3.16
3877 5087 7.115378 GCAACAATCACAGAAAGTAGAATTTGG 59.885 37.037 0.00 0.00 0.00 3.28
3976 5186 2.417933 GAGACACTGCAATAGCCTGTTG 59.582 50.000 0.00 0.00 41.13 3.33
4142 5362 4.509600 GCAGATACATTGAGCAAGAGTACC 59.490 45.833 0.00 0.00 0.00 3.34
4191 5411 9.071276 CCCAAAGAAGCAAGTATGTATATGATT 57.929 33.333 0.00 0.00 0.00 2.57
4192 5412 8.439971 TCCCAAAGAAGCAAGTATGTATATGAT 58.560 33.333 0.00 0.00 0.00 2.45
4193 5413 7.715249 GTCCCAAAGAAGCAAGTATGTATATGA 59.285 37.037 0.00 0.00 0.00 2.15
4194 5414 7.716998 AGTCCCAAAGAAGCAAGTATGTATATG 59.283 37.037 0.00 0.00 0.00 1.78
4195 5415 7.806180 AGTCCCAAAGAAGCAAGTATGTATAT 58.194 34.615 0.00 0.00 0.00 0.86
4196 5416 7.195374 AGTCCCAAAGAAGCAAGTATGTATA 57.805 36.000 0.00 0.00 0.00 1.47
4197 5417 6.067217 AGTCCCAAAGAAGCAAGTATGTAT 57.933 37.500 0.00 0.00 0.00 2.29
4198 5418 5.499004 AGTCCCAAAGAAGCAAGTATGTA 57.501 39.130 0.00 0.00 0.00 2.29
4199 5419 4.373156 AGTCCCAAAGAAGCAAGTATGT 57.627 40.909 0.00 0.00 0.00 2.29
4200 5420 6.817765 TTAAGTCCCAAAGAAGCAAGTATG 57.182 37.500 0.00 0.00 0.00 2.39
4242 5462 5.654603 TCGTTGATCCTTAGAAGCAAGTA 57.345 39.130 0.00 0.00 0.00 2.24
4253 5497 5.419155 TCACTTGTCTCTATCGTTGATCCTT 59.581 40.000 0.00 0.00 0.00 3.36
4265 5509 1.174783 GTCCGCCTCACTTGTCTCTA 58.825 55.000 0.00 0.00 0.00 2.43
4308 5552 7.383300 AGAAGCAATCTTTTCAACAATTACAGC 59.617 33.333 0.00 0.00 33.39 4.40
4349 5594 4.824537 TGTAGCAAGATTTTGGCTAACACA 59.175 37.500 0.00 0.00 34.79 3.72
4350 5595 5.371115 TGTAGCAAGATTTTGGCTAACAC 57.629 39.130 0.00 0.00 34.79 3.32
4368 5613 8.041323 ACCCTGTTATTAGTGTTTCTCATGTAG 58.959 37.037 0.00 0.00 0.00 2.74
4385 5630 8.442660 TTTTCCCATAAATTTGACCCTGTTAT 57.557 30.769 0.00 0.00 0.00 1.89
4502 5747 1.442857 GTCTCAGGTGAGCGTCGTG 60.443 63.158 1.81 0.00 41.80 4.35
4544 5789 6.604795 AGTCCTGCATCTTAAATAAACAGCAT 59.395 34.615 0.00 0.00 0.00 3.79
4562 5807 3.073274 AGTTACAAATCCCAGTCCTGC 57.927 47.619 0.00 0.00 0.00 4.85
4585 5830 5.643777 ACACGATTTCCAGTCCTTTCTTATG 59.356 40.000 0.00 0.00 0.00 1.90
4670 5915 1.818674 GCTTCATACCAGGTTGTTGGG 59.181 52.381 0.00 0.00 42.76 4.12
4756 6001 3.447586 ACGATGTAACTACCACTCTGCAT 59.552 43.478 0.00 0.00 0.00 3.96
4757 6002 2.823747 ACGATGTAACTACCACTCTGCA 59.176 45.455 0.00 0.00 0.00 4.41
4765 6010 5.069501 AGGAGTTCAACGATGTAACTACC 57.930 43.478 13.01 12.71 35.09 3.18
4767 6012 5.396484 CGAAGGAGTTCAACGATGTAACTA 58.604 41.667 9.34 0.00 33.72 2.24
4769 6014 3.181533 GCGAAGGAGTTCAACGATGTAAC 60.182 47.826 0.00 0.00 32.36 2.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.