Multiple sequence alignment - TraesCS3B01G558500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G558500 chr3B 100.000 2330 0 0 1 2330 792870418 792872747 0.000000e+00 4303.0
1 TraesCS3B01G558500 chr3B 83.111 450 50 14 802 1231 792970715 792971158 1.010000e-103 387.0
2 TraesCS3B01G558500 chr3B 90.367 218 20 1 2109 2326 703114111 703114327 3.790000e-73 285.0
3 TraesCS3B01G558500 chr3D 89.474 836 58 10 790 1610 591816988 591816168 0.000000e+00 1029.0
4 TraesCS3B01G558500 chr3D 81.275 502 55 19 832 1309 591723630 591723144 1.020000e-98 370.0
5 TraesCS3B01G558500 chr3D 89.908 218 19 3 2109 2326 551070660 551070446 6.340000e-71 278.0
6 TraesCS3B01G558500 chr3D 78.755 273 42 9 195 454 587318103 587317834 3.980000e-38 169.0
7 TraesCS3B01G558500 chr3A 87.439 820 71 11 790 1590 722284657 722285463 0.000000e+00 915.0
8 TraesCS3B01G558500 chr3A 82.960 804 96 19 832 1610 722306879 722307666 0.000000e+00 688.0
9 TraesCS3B01G558500 chr3A 89.168 517 47 5 1601 2109 70704877 70704362 9.080000e-179 636.0
10 TraesCS3B01G558500 chr3A 80.624 449 59 11 7 428 711657802 711657355 2.890000e-84 322.0
11 TraesCS3B01G558500 chr7B 90.180 499 46 3 1611 2109 736094648 736095143 0.000000e+00 647.0
12 TraesCS3B01G558500 chr7B 91.628 215 17 1 2109 2323 286843934 286844147 1.750000e-76 296.0
13 TraesCS3B01G558500 chr7B 93.467 199 12 1 2109 2307 736095283 736095480 6.300000e-76 294.0
14 TraesCS3B01G558500 chr7B 91.748 206 17 0 2125 2330 736095094 736095299 1.050000e-73 287.0
15 TraesCS3B01G558500 chr5B 89.980 499 50 0 1611 2109 488253282 488253780 0.000000e+00 645.0
16 TraesCS3B01G558500 chr5B 86.207 58 5 3 374 428 461823162 461823105 2.500000e-05 60.2
17 TraesCS3B01G558500 chr5A 89.216 510 47 5 1608 2109 449013613 449014122 4.230000e-177 630.0
18 TraesCS3B01G558500 chr5A 89.349 507 46 4 1611 2109 668229981 668230487 4.230000e-177 630.0
19 TraesCS3B01G558500 chr7A 89.194 509 47 4 1609 2109 11866416 11866924 1.520000e-176 628.0
20 TraesCS3B01G558500 chr7A 89.194 509 47 4 1609 2109 11912325 11912833 1.520000e-176 628.0
21 TraesCS3B01G558500 chr7A 90.826 218 19 1 2109 2326 29665969 29665753 8.140000e-75 291.0
22 TraesCS3B01G558500 chr6D 89.041 511 44 8 1610 2111 423543646 423544153 7.070000e-175 623.0
23 TraesCS3B01G558500 chr2A 88.824 510 49 5 1608 2109 653375704 653376213 9.150000e-174 619.0
24 TraesCS3B01G558500 chr2A 77.907 602 100 20 7 578 146827887 146827289 6.160000e-91 344.0
25 TraesCS3B01G558500 chr2A 82.680 306 41 4 7 300 606820997 606821302 6.390000e-66 261.0
26 TraesCS3B01G558500 chr2A 78.125 416 65 13 5 396 57542997 57542584 8.320000e-60 241.0
27 TraesCS3B01G558500 chr2A 79.221 308 48 9 4 298 760925996 760926300 1.410000e-47 200.0
28 TraesCS3B01G558500 chr4A 81.513 595 88 15 2 578 503609470 503608880 9.750000e-129 470.0
29 TraesCS3B01G558500 chr4A 76.499 417 71 16 5 397 26667408 26666995 3.930000e-48 202.0
30 TraesCS3B01G558500 chr4B 80.737 597 92 13 5 582 128019037 128018445 5.910000e-121 444.0
31 TraesCS3B01G558500 chr7D 79.583 480 66 18 5 461 424105910 424106380 4.830000e-82 315.0
32 TraesCS3B01G558500 chr7D 79.587 436 64 10 7 418 628565232 628565666 2.930000e-74 289.0
33 TraesCS3B01G558500 chr7D 78.556 471 74 15 5 452 133821700 133822166 3.790000e-73 285.0
34 TraesCS3B01G558500 chr7D 80.000 215 26 10 218 418 628592652 628592863 2.410000e-30 143.0
35 TraesCS3B01G558500 chr5D 90.498 221 19 2 2108 2326 305780265 305780485 8.140000e-75 291.0
36 TraesCS3B01G558500 chr5D 78.604 444 65 21 9 428 104433293 104432856 1.370000e-67 267.0
37 TraesCS3B01G558500 chr1D 92.611 203 14 1 2110 2312 327750722 327750521 8.140000e-75 291.0
38 TraesCS3B01G558500 chr1D 83.442 308 39 5 5 300 467385273 467385580 2.280000e-70 276.0
39 TraesCS3B01G558500 chr6B 89.286 224 19 4 2109 2330 2033665 2033885 2.280000e-70 276.0
40 TraesCS3B01G558500 chr6B 78.795 448 68 13 5 428 635181828 635182272 2.280000e-70 276.0
41 TraesCS3B01G558500 chrUn 81.250 304 43 6 8 298 20702187 20702489 1.390000e-57 233.0
42 TraesCS3B01G558500 chr1A 80.195 308 48 6 5 300 559581234 559581540 3.900000e-53 219.0
43 TraesCS3B01G558500 chr4D 92.857 42 3 0 374 415 62279300 62279259 6.950000e-06 62.1
44 TraesCS3B01G558500 chr4D 89.362 47 4 1 374 420 427944543 427944588 8.990000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G558500 chr3B 792870418 792872747 2329 False 4303.000000 4303 100.000000 1 2330 1 chr3B.!!$F2 2329
1 TraesCS3B01G558500 chr3D 591816168 591816988 820 True 1029.000000 1029 89.474000 790 1610 1 chr3D.!!$R4 820
2 TraesCS3B01G558500 chr3A 722284657 722285463 806 False 915.000000 915 87.439000 790 1590 1 chr3A.!!$F1 800
3 TraesCS3B01G558500 chr3A 722306879 722307666 787 False 688.000000 688 82.960000 832 1610 1 chr3A.!!$F2 778
4 TraesCS3B01G558500 chr3A 70704362 70704877 515 True 636.000000 636 89.168000 1601 2109 1 chr3A.!!$R1 508
5 TraesCS3B01G558500 chr7B 736094648 736095480 832 False 409.333333 647 91.798333 1611 2330 3 chr7B.!!$F2 719
6 TraesCS3B01G558500 chr5A 449013613 449014122 509 False 630.000000 630 89.216000 1608 2109 1 chr5A.!!$F1 501
7 TraesCS3B01G558500 chr5A 668229981 668230487 506 False 630.000000 630 89.349000 1611 2109 1 chr5A.!!$F2 498
8 TraesCS3B01G558500 chr7A 11866416 11866924 508 False 628.000000 628 89.194000 1609 2109 1 chr7A.!!$F1 500
9 TraesCS3B01G558500 chr7A 11912325 11912833 508 False 628.000000 628 89.194000 1609 2109 1 chr7A.!!$F2 500
10 TraesCS3B01G558500 chr6D 423543646 423544153 507 False 623.000000 623 89.041000 1610 2111 1 chr6D.!!$F1 501
11 TraesCS3B01G558500 chr2A 653375704 653376213 509 False 619.000000 619 88.824000 1608 2109 1 chr2A.!!$F2 501
12 TraesCS3B01G558500 chr2A 146827289 146827887 598 True 344.000000 344 77.907000 7 578 1 chr2A.!!$R2 571
13 TraesCS3B01G558500 chr4A 503608880 503609470 590 True 470.000000 470 81.513000 2 578 1 chr4A.!!$R2 576
14 TraesCS3B01G558500 chr4B 128018445 128019037 592 True 444.000000 444 80.737000 5 582 1 chr4B.!!$R1 577

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
665 696 0.031585 TCGACAAAGAGACACCACCG 59.968 55.0 0.0 0.0 0.0 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2111 2391 0.457337 GATACCACCGTCGTCCACAC 60.457 60.0 0.0 0.0 0.0 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 3.402628 AGACAAGAAGCGGCTAGAAAA 57.597 42.857 1.35 0.00 0.00 2.29
55 56 3.059352 AGCGGCTAGAAAAGATGTTGT 57.941 42.857 0.00 0.00 0.00 3.32
78 79 0.961019 GGCATTTGGAGTTCTGCACA 59.039 50.000 0.00 0.00 36.34 4.57
89 90 1.518102 GTTCTGCACACATGTTTTGCG 59.482 47.619 19.53 15.24 39.22 4.85
102 103 1.025812 TTTTGCGGTTGTTCGTGGAT 58.974 45.000 0.00 0.00 0.00 3.41
128 129 4.384647 GCTAAACAATGGGATCCAGAGACT 60.385 45.833 15.23 0.00 36.75 3.24
138 139 2.398754 TCCAGAGACTTTGTGGGAGA 57.601 50.000 0.00 0.00 40.60 3.71
145 146 4.161942 AGAGACTTTGTGGGAGATGATGAG 59.838 45.833 0.00 0.00 0.00 2.90
146 147 3.843027 AGACTTTGTGGGAGATGATGAGT 59.157 43.478 0.00 0.00 0.00 3.41
156 157 3.438087 GGAGATGATGAGTTGTTGTGTGG 59.562 47.826 0.00 0.00 0.00 4.17
184 185 2.756760 ACAACATGATTGTGGAGGATGC 59.243 45.455 0.00 0.00 35.83 3.91
185 186 3.021695 CAACATGATTGTGGAGGATGCT 58.978 45.455 0.00 0.00 35.83 3.79
186 187 4.201657 CAACATGATTGTGGAGGATGCTA 58.798 43.478 0.00 0.00 35.83 3.49
189 202 2.481441 TGATTGTGGAGGATGCTACCT 58.519 47.619 0.00 2.12 43.64 3.08
202 215 6.080682 AGGATGCTACCTCATCTCTTGAATA 58.919 40.000 4.10 0.00 41.83 1.75
208 221 7.039853 TGCTACCTCATCTCTTGAATATGAGAG 60.040 40.741 17.29 11.76 46.22 3.20
224 237 3.321039 TGAGAGCATGGGTGATCCTATT 58.679 45.455 0.00 0.00 41.64 1.73
228 241 6.044754 TGAGAGCATGGGTGATCCTATTAAAT 59.955 38.462 0.00 0.00 41.64 1.40
232 245 7.300658 AGCATGGGTGATCCTATTAAATTTCT 58.699 34.615 0.00 0.00 32.46 2.52
239 252 8.966868 GGTGATCCTATTAAATTTCTTGACCAA 58.033 33.333 0.00 0.00 0.00 3.67
247 260 5.545063 AAATTTCTTGACCAAAATCCGGT 57.455 34.783 0.00 0.00 40.30 5.28
258 271 4.100189 ACCAAAATCCGGTCACATTTGAAA 59.900 37.500 0.00 0.00 33.86 2.69
264 277 6.642707 ATCCGGTCACATTTGAAAAGTTTA 57.357 33.333 0.00 0.00 31.90 2.01
287 311 6.880822 ATTCAAATGCATCGACAAATTCAG 57.119 33.333 0.00 0.00 0.00 3.02
309 333 3.181522 GCATCGAGCAACTGAAGAAAGAG 60.182 47.826 0.00 0.00 44.79 2.85
322 346 8.072321 ACTGAAGAAAGAGCTGATTGAGTATA 57.928 34.615 0.00 0.00 0.00 1.47
323 347 8.535335 ACTGAAGAAAGAGCTGATTGAGTATAA 58.465 33.333 0.00 0.00 0.00 0.98
331 355 3.741388 GCTGATTGAGTATAAGTGGGCGT 60.741 47.826 0.00 0.00 0.00 5.68
340 364 1.360185 TAAGTGGGCGTTTAAGGGGA 58.640 50.000 0.00 0.00 0.00 4.81
341 365 0.037734 AAGTGGGCGTTTAAGGGGAG 59.962 55.000 0.00 0.00 0.00 4.30
352 376 4.216687 CGTTTAAGGGGAGCAACAATGTTA 59.783 41.667 0.00 0.00 0.00 2.41
367 391 9.840427 GCAACAATGTTAGAGTGTAATATTTGT 57.160 29.630 0.00 1.00 31.02 2.83
407 433 6.573664 ACTACTGCTGCATTTGAACATTTA 57.426 33.333 1.31 0.00 0.00 1.40
452 478 2.916716 GTTATTCGAACGTGCGGACTTA 59.083 45.455 17.57 0.00 0.00 2.24
454 483 2.068837 TTCGAACGTGCGGACTTAAT 57.931 45.000 17.57 0.00 0.00 1.40
455 484 2.068837 TCGAACGTGCGGACTTAATT 57.931 45.000 17.57 0.00 0.00 1.40
457 486 2.801679 TCGAACGTGCGGACTTAATTTT 59.198 40.909 17.57 0.00 0.00 1.82
458 487 3.248125 TCGAACGTGCGGACTTAATTTTT 59.752 39.130 17.57 0.00 0.00 1.94
492 522 2.103941 TGTATGCCATAGCGTTGGATGA 59.896 45.455 11.66 0.00 44.31 2.92
493 523 2.346766 ATGCCATAGCGTTGGATGAA 57.653 45.000 11.66 0.00 44.31 2.57
502 532 3.927555 GTTGGATGAACGACTCCCA 57.072 52.632 0.00 0.00 0.00 4.37
503 533 2.403252 GTTGGATGAACGACTCCCAT 57.597 50.000 0.00 0.00 0.00 4.00
508 538 2.632996 GGATGAACGACTCCCATATCCA 59.367 50.000 0.00 0.00 34.27 3.41
521 551 2.562738 CCATATCCATGTCTGCGGACTA 59.437 50.000 25.54 12.97 42.54 2.59
528 558 1.380112 GTCTGCGGACTAGTCCCCT 60.380 63.158 31.78 0.00 46.96 4.79
539 569 3.896272 GACTAGTCCCCTTATTCGTGGAT 59.104 47.826 12.13 0.00 0.00 3.41
548 578 3.006537 CCTTATTCGTGGATGGATACGGT 59.993 47.826 0.00 0.00 40.48 4.83
566 597 3.194861 CGGTAGAAATTTGCGGATCAGA 58.805 45.455 0.00 0.00 0.00 3.27
578 609 2.877168 GCGGATCAGAATTGAAGATGCT 59.123 45.455 0.00 0.00 36.78 3.79
580 611 4.512944 GCGGATCAGAATTGAAGATGCTTA 59.487 41.667 0.00 0.00 36.78 3.09
582 613 6.656945 CGGATCAGAATTGAAGATGCTTAAG 58.343 40.000 0.00 0.00 36.78 1.85
583 614 6.293298 CGGATCAGAATTGAAGATGCTTAAGG 60.293 42.308 4.29 0.00 36.78 2.69
584 615 5.824904 TCAGAATTGAAGATGCTTAAGGC 57.175 39.130 4.29 0.00 42.22 4.35
585 616 4.641989 TCAGAATTGAAGATGCTTAAGGCC 59.358 41.667 4.29 0.00 40.92 5.19
586 617 3.629398 AGAATTGAAGATGCTTAAGGCCG 59.371 43.478 4.29 0.00 40.92 6.13
587 618 1.750193 TTGAAGATGCTTAAGGCCGG 58.250 50.000 4.29 0.00 40.92 6.13
588 619 0.618458 TGAAGATGCTTAAGGCCGGT 59.382 50.000 1.90 0.00 40.92 5.28
589 620 1.834896 TGAAGATGCTTAAGGCCGGTA 59.165 47.619 1.90 0.00 40.92 4.02
590 621 2.210961 GAAGATGCTTAAGGCCGGTAC 58.789 52.381 1.90 0.00 40.92 3.34
591 622 1.200519 AGATGCTTAAGGCCGGTACA 58.799 50.000 1.90 0.00 40.92 2.90
592 623 1.557832 AGATGCTTAAGGCCGGTACAA 59.442 47.619 1.90 0.00 40.92 2.41
593 624 1.669265 GATGCTTAAGGCCGGTACAAC 59.331 52.381 1.90 0.00 40.92 3.32
594 625 0.321830 TGCTTAAGGCCGGTACAACC 60.322 55.000 1.90 0.00 40.92 3.77
595 626 0.321830 GCTTAAGGCCGGTACAACCA 60.322 55.000 1.90 0.00 38.47 3.67
596 627 1.883209 GCTTAAGGCCGGTACAACCAA 60.883 52.381 1.90 0.00 38.47 3.67
597 628 2.718563 CTTAAGGCCGGTACAACCAAT 58.281 47.619 1.90 0.00 38.47 3.16
598 629 3.876341 CTTAAGGCCGGTACAACCAATA 58.124 45.455 1.90 0.00 38.47 1.90
599 630 2.883122 AAGGCCGGTACAACCAATAA 57.117 45.000 1.90 0.00 38.47 1.40
600 631 2.118313 AGGCCGGTACAACCAATAAC 57.882 50.000 1.90 0.00 38.47 1.89
601 632 1.097232 GGCCGGTACAACCAATAACC 58.903 55.000 1.90 0.00 38.47 2.85
602 633 1.613785 GGCCGGTACAACCAATAACCA 60.614 52.381 1.90 0.00 38.47 3.67
603 634 1.469703 GCCGGTACAACCAATAACCAC 59.530 52.381 1.90 0.00 38.47 4.16
604 635 2.780714 CCGGTACAACCAATAACCACA 58.219 47.619 0.00 0.00 38.47 4.17
605 636 3.147629 CCGGTACAACCAATAACCACAA 58.852 45.455 0.00 0.00 38.47 3.33
606 637 3.058085 CCGGTACAACCAATAACCACAAC 60.058 47.826 0.00 0.00 38.47 3.32
607 638 3.364167 CGGTACAACCAATAACCACAACG 60.364 47.826 0.00 0.00 38.47 4.10
608 639 3.565063 GGTACAACCAATAACCACAACGT 59.435 43.478 0.00 0.00 38.42 3.99
609 640 4.754114 GGTACAACCAATAACCACAACGTA 59.246 41.667 0.00 0.00 38.42 3.57
610 641 4.816786 ACAACCAATAACCACAACGTAC 57.183 40.909 0.00 0.00 0.00 3.67
611 642 3.248125 ACAACCAATAACCACAACGTACG 59.752 43.478 15.01 15.01 0.00 3.67
612 643 1.799994 ACCAATAACCACAACGTACGC 59.200 47.619 16.72 0.00 0.00 4.42
613 644 1.799403 CCAATAACCACAACGTACGCA 59.201 47.619 16.72 0.00 0.00 5.24
614 645 2.159761 CCAATAACCACAACGTACGCAG 60.160 50.000 16.72 10.69 0.00 5.18
615 646 1.717194 ATAACCACAACGTACGCAGG 58.283 50.000 16.72 14.15 0.00 4.85
616 647 0.945265 TAACCACAACGTACGCAGGC 60.945 55.000 16.72 0.00 0.00 4.85
617 648 3.419759 CCACAACGTACGCAGGCC 61.420 66.667 16.72 0.00 0.00 5.19
618 649 3.773630 CACAACGTACGCAGGCCG 61.774 66.667 16.72 0.00 44.21 6.13
629 660 2.046700 CAGGCCGCCGGAAAACTA 60.047 61.111 7.68 0.00 0.00 2.24
630 661 1.673009 CAGGCCGCCGGAAAACTAA 60.673 57.895 7.68 0.00 0.00 2.24
631 662 1.673337 AGGCCGCCGGAAAACTAAC 60.673 57.895 7.68 0.00 0.00 2.34
632 663 2.477396 GCCGCCGGAAAACTAACG 59.523 61.111 7.68 0.00 0.00 3.18
633 664 2.477396 CCGCCGGAAAACTAACGC 59.523 61.111 5.05 0.00 0.00 4.84
634 665 2.319096 CCGCCGGAAAACTAACGCA 61.319 57.895 5.05 0.00 0.00 5.24
635 666 1.131826 CGCCGGAAAACTAACGCAG 59.868 57.895 5.05 0.00 0.00 5.18
636 667 1.286354 CGCCGGAAAACTAACGCAGA 61.286 55.000 5.05 0.00 0.00 4.26
637 668 0.165295 GCCGGAAAACTAACGCAGAC 59.835 55.000 5.05 0.00 0.00 3.51
638 669 1.504359 CCGGAAAACTAACGCAGACA 58.496 50.000 0.00 0.00 0.00 3.41
639 670 1.459592 CCGGAAAACTAACGCAGACAG 59.540 52.381 0.00 0.00 0.00 3.51
640 671 1.136336 CGGAAAACTAACGCAGACAGC 60.136 52.381 0.00 0.00 40.87 4.40
641 672 1.197036 GGAAAACTAACGCAGACAGCC 59.803 52.381 0.00 0.00 41.38 4.85
642 673 0.865769 AAAACTAACGCAGACAGCCG 59.134 50.000 0.00 0.00 41.38 5.52
643 674 1.566018 AAACTAACGCAGACAGCCGC 61.566 55.000 0.00 0.00 41.38 6.53
644 675 2.432456 CTAACGCAGACAGCCGCA 60.432 61.111 0.00 0.00 41.38 5.69
645 676 2.730672 CTAACGCAGACAGCCGCAC 61.731 63.158 0.00 0.00 41.38 5.34
646 677 3.220999 TAACGCAGACAGCCGCACT 62.221 57.895 0.00 0.00 41.38 4.40
649 680 4.724602 GCAGACAGCCGCACTCGA 62.725 66.667 0.00 0.00 38.10 4.04
650 681 2.807045 CAGACAGCCGCACTCGAC 60.807 66.667 0.00 0.00 38.10 4.20
651 682 3.295273 AGACAGCCGCACTCGACA 61.295 61.111 0.00 0.00 38.10 4.35
652 683 2.355837 GACAGCCGCACTCGACAA 60.356 61.111 0.00 0.00 38.10 3.18
653 684 1.954146 GACAGCCGCACTCGACAAA 60.954 57.895 0.00 0.00 38.10 2.83
654 685 1.891060 GACAGCCGCACTCGACAAAG 61.891 60.000 0.00 0.00 38.10 2.77
655 686 1.664649 CAGCCGCACTCGACAAAGA 60.665 57.895 0.00 0.00 38.10 2.52
656 687 1.373497 AGCCGCACTCGACAAAGAG 60.373 57.895 0.00 0.00 43.56 2.85
657 688 1.372997 GCCGCACTCGACAAAGAGA 60.373 57.895 0.62 0.00 40.57 3.10
658 689 1.618640 GCCGCACTCGACAAAGAGAC 61.619 60.000 0.62 0.00 40.57 3.36
659 690 0.318699 CCGCACTCGACAAAGAGACA 60.319 55.000 0.62 0.00 40.57 3.41
660 691 0.778815 CGCACTCGACAAAGAGACAC 59.221 55.000 0.62 0.00 40.57 3.67
661 692 1.140816 GCACTCGACAAAGAGACACC 58.859 55.000 0.62 0.00 40.57 4.16
662 693 1.538204 GCACTCGACAAAGAGACACCA 60.538 52.381 0.62 0.00 40.57 4.17
663 694 2.128035 CACTCGACAAAGAGACACCAC 58.872 52.381 0.62 0.00 40.57 4.16
664 695 1.068741 ACTCGACAAAGAGACACCACC 59.931 52.381 0.62 0.00 40.57 4.61
665 696 0.031585 TCGACAAAGAGACACCACCG 59.968 55.000 0.00 0.00 0.00 4.94
666 697 0.031585 CGACAAAGAGACACCACCGA 59.968 55.000 0.00 0.00 0.00 4.69
667 698 1.784525 GACAAAGAGACACCACCGAG 58.215 55.000 0.00 0.00 0.00 4.63
668 699 0.249911 ACAAAGAGACACCACCGAGC 60.250 55.000 0.00 0.00 0.00 5.03
669 700 0.951040 CAAAGAGACACCACCGAGCC 60.951 60.000 0.00 0.00 0.00 4.70
670 701 2.113243 AAAGAGACACCACCGAGCCC 62.113 60.000 0.00 0.00 0.00 5.19
671 702 3.311110 GAGACACCACCGAGCCCA 61.311 66.667 0.00 0.00 0.00 5.36
672 703 3.591254 GAGACACCACCGAGCCCAC 62.591 68.421 0.00 0.00 0.00 4.61
673 704 3.936203 GACACCACCGAGCCCACA 61.936 66.667 0.00 0.00 0.00 4.17
674 705 3.883744 GACACCACCGAGCCCACAG 62.884 68.421 0.00 0.00 0.00 3.66
675 706 3.941188 CACCACCGAGCCCACAGT 61.941 66.667 0.00 0.00 0.00 3.55
676 707 3.168528 ACCACCGAGCCCACAGTT 61.169 61.111 0.00 0.00 0.00 3.16
677 708 2.113139 CCACCGAGCCCACAGTTT 59.887 61.111 0.00 0.00 0.00 2.66
678 709 2.260869 CCACCGAGCCCACAGTTTG 61.261 63.158 0.00 0.00 0.00 2.93
679 710 2.594592 ACCGAGCCCACAGTTTGC 60.595 61.111 0.00 0.00 0.00 3.68
680 711 2.594303 CCGAGCCCACAGTTTGCA 60.594 61.111 0.00 0.00 0.00 4.08
681 712 2.192861 CCGAGCCCACAGTTTGCAA 61.193 57.895 0.00 0.00 0.00 4.08
682 713 1.283793 CGAGCCCACAGTTTGCAAG 59.716 57.895 0.00 0.00 0.00 4.01
683 714 1.165907 CGAGCCCACAGTTTGCAAGA 61.166 55.000 0.00 0.00 0.00 3.02
684 715 1.032014 GAGCCCACAGTTTGCAAGAA 58.968 50.000 0.00 0.00 0.00 2.52
685 716 1.615392 GAGCCCACAGTTTGCAAGAAT 59.385 47.619 0.00 0.00 0.00 2.40
686 717 2.036346 GAGCCCACAGTTTGCAAGAATT 59.964 45.455 0.00 0.00 0.00 2.17
687 718 2.435437 AGCCCACAGTTTGCAAGAATTT 59.565 40.909 0.00 0.00 0.00 1.82
688 719 3.118298 AGCCCACAGTTTGCAAGAATTTT 60.118 39.130 0.00 0.00 0.00 1.82
689 720 4.100808 AGCCCACAGTTTGCAAGAATTTTA 59.899 37.500 0.00 0.00 0.00 1.52
690 721 4.211164 GCCCACAGTTTGCAAGAATTTTAC 59.789 41.667 0.00 0.00 0.00 2.01
691 722 5.355596 CCCACAGTTTGCAAGAATTTTACA 58.644 37.500 0.00 0.00 0.00 2.41
692 723 5.463061 CCCACAGTTTGCAAGAATTTTACAG 59.537 40.000 0.00 0.00 0.00 2.74
693 724 5.050837 CCACAGTTTGCAAGAATTTTACAGC 60.051 40.000 0.00 0.00 0.00 4.40
694 725 5.519566 CACAGTTTGCAAGAATTTTACAGCA 59.480 36.000 0.00 0.00 0.00 4.41
695 726 6.035866 CACAGTTTGCAAGAATTTTACAGCAA 59.964 34.615 0.00 0.00 39.86 3.91
696 727 6.762661 ACAGTTTGCAAGAATTTTACAGCAAT 59.237 30.769 0.00 0.00 41.02 3.56
697 728 7.280652 ACAGTTTGCAAGAATTTTACAGCAATT 59.719 29.630 0.00 0.00 41.02 2.32
698 729 8.763356 CAGTTTGCAAGAATTTTACAGCAATTA 58.237 29.630 0.00 0.00 41.02 1.40
699 730 9.323985 AGTTTGCAAGAATTTTACAGCAATTAA 57.676 25.926 0.00 0.00 41.02 1.40
707 738 9.777297 AGAATTTTACAGCAATTAATTTGTGGT 57.223 25.926 13.45 6.37 37.65 4.16
710 741 8.948631 TTTTACAGCAATTAATTTGTGGTTGA 57.051 26.923 13.45 0.00 37.65 3.18
711 742 8.586570 TTTACAGCAATTAATTTGTGGTTGAG 57.413 30.769 13.45 0.00 37.65 3.02
712 743 6.403866 ACAGCAATTAATTTGTGGTTGAGA 57.596 33.333 4.99 0.00 37.65 3.27
713 744 6.815089 ACAGCAATTAATTTGTGGTTGAGAA 58.185 32.000 4.99 0.00 37.65 2.87
714 745 6.701400 ACAGCAATTAATTTGTGGTTGAGAAC 59.299 34.615 4.99 0.00 37.65 3.01
715 746 6.925165 CAGCAATTAATTTGTGGTTGAGAACT 59.075 34.615 0.00 0.00 37.65 3.01
716 747 8.081633 CAGCAATTAATTTGTGGTTGAGAACTA 58.918 33.333 0.00 0.00 37.65 2.24
717 748 8.637986 AGCAATTAATTTGTGGTTGAGAACTAA 58.362 29.630 0.00 0.00 37.65 2.24
718 749 8.699749 GCAATTAATTTGTGGTTGAGAACTAAC 58.300 33.333 0.00 0.00 37.65 2.34
719 750 9.191995 CAATTAATTTGTGGTTGAGAACTAACC 57.808 33.333 0.00 0.00 46.13 2.85
720 751 5.784578 AATTTGTGGTTGAGAACTAACCC 57.215 39.130 0.00 0.00 45.51 4.11
721 752 3.935818 TTGTGGTTGAGAACTAACCCA 57.064 42.857 0.00 0.00 45.51 4.51
722 753 3.935818 TGTGGTTGAGAACTAACCCAA 57.064 42.857 0.00 0.00 45.51 4.12
723 754 3.547746 TGTGGTTGAGAACTAACCCAAC 58.452 45.455 0.00 0.00 45.51 3.77
724 755 2.546789 GTGGTTGAGAACTAACCCAACG 59.453 50.000 0.00 0.00 45.51 4.10
725 756 2.171027 TGGTTGAGAACTAACCCAACGT 59.829 45.455 0.00 0.00 45.51 3.99
726 757 3.387374 TGGTTGAGAACTAACCCAACGTA 59.613 43.478 0.00 0.00 45.51 3.57
727 758 3.742882 GGTTGAGAACTAACCCAACGTAC 59.257 47.826 0.00 0.00 41.34 3.67
728 759 4.370917 GTTGAGAACTAACCCAACGTACA 58.629 43.478 0.00 0.00 31.16 2.90
729 760 3.981211 TGAGAACTAACCCAACGTACAC 58.019 45.455 0.00 0.00 0.00 2.90
730 761 3.384146 TGAGAACTAACCCAACGTACACA 59.616 43.478 0.00 0.00 0.00 3.72
731 762 3.985925 GAGAACTAACCCAACGTACACAG 59.014 47.826 0.00 0.00 0.00 3.66
732 763 2.825861 ACTAACCCAACGTACACAGG 57.174 50.000 0.00 0.00 0.00 4.00
733 764 1.270465 ACTAACCCAACGTACACAGGC 60.270 52.381 0.00 0.00 0.00 4.85
734 765 0.035176 TAACCCAACGTACACAGGCC 59.965 55.000 0.00 0.00 0.00 5.19
735 766 2.740826 CCCAACGTACACAGGCCG 60.741 66.667 0.00 0.00 0.00 6.13
736 767 3.419759 CCAACGTACACAGGCCGC 61.420 66.667 0.00 0.00 0.00 6.53
737 768 3.419759 CAACGTACACAGGCCGCC 61.420 66.667 0.00 0.00 0.00 6.13
741 772 4.814294 GTACACAGGCCGCCGGAG 62.814 72.222 17.16 11.05 0.00 4.63
743 774 3.942377 TACACAGGCCGCCGGAGTA 62.942 63.158 17.16 15.46 0.00 2.59
744 775 4.514577 CACAGGCCGCCGGAGTAG 62.515 72.222 17.16 0.00 0.00 2.57
749 780 4.752879 GCCGCCGGAGTAGCACAA 62.753 66.667 7.68 0.00 0.00 3.33
750 781 2.047655 CCGCCGGAGTAGCACAAA 60.048 61.111 5.05 0.00 0.00 2.83
751 782 1.449601 CCGCCGGAGTAGCACAAAT 60.450 57.895 5.05 0.00 0.00 2.32
752 783 1.429148 CCGCCGGAGTAGCACAAATC 61.429 60.000 5.05 0.00 0.00 2.17
753 784 0.739462 CGCCGGAGTAGCACAAATCA 60.739 55.000 5.05 0.00 0.00 2.57
754 785 1.668419 GCCGGAGTAGCACAAATCAT 58.332 50.000 5.05 0.00 0.00 2.45
755 786 2.801699 CGCCGGAGTAGCACAAATCATA 60.802 50.000 5.05 0.00 0.00 2.15
756 787 2.802816 GCCGGAGTAGCACAAATCATAG 59.197 50.000 5.05 0.00 0.00 2.23
757 788 2.802816 CCGGAGTAGCACAAATCATAGC 59.197 50.000 0.00 0.00 0.00 2.97
758 789 3.457234 CGGAGTAGCACAAATCATAGCA 58.543 45.455 0.00 0.00 0.00 3.49
759 790 3.246226 CGGAGTAGCACAAATCATAGCAC 59.754 47.826 0.00 0.00 0.00 4.40
760 791 4.191544 GGAGTAGCACAAATCATAGCACA 58.808 43.478 0.00 0.00 0.00 4.57
761 792 4.635765 GGAGTAGCACAAATCATAGCACAA 59.364 41.667 0.00 0.00 0.00 3.33
762 793 5.123820 GGAGTAGCACAAATCATAGCACAAA 59.876 40.000 0.00 0.00 0.00 2.83
763 794 6.183360 GGAGTAGCACAAATCATAGCACAAAT 60.183 38.462 0.00 0.00 0.00 2.32
764 795 7.012327 GGAGTAGCACAAATCATAGCACAAATA 59.988 37.037 0.00 0.00 0.00 1.40
765 796 8.279970 AGTAGCACAAATCATAGCACAAATAA 57.720 30.769 0.00 0.00 0.00 1.40
766 797 8.400947 AGTAGCACAAATCATAGCACAAATAAG 58.599 33.333 0.00 0.00 0.00 1.73
767 798 7.395190 AGCACAAATCATAGCACAAATAAGA 57.605 32.000 0.00 0.00 0.00 2.10
768 799 7.829725 AGCACAAATCATAGCACAAATAAGAA 58.170 30.769 0.00 0.00 0.00 2.52
769 800 8.472413 AGCACAAATCATAGCACAAATAAGAAT 58.528 29.630 0.00 0.00 0.00 2.40
770 801 9.090692 GCACAAATCATAGCACAAATAAGAATT 57.909 29.630 0.00 0.00 0.00 2.17
780 811 8.829373 AGCACAAATAAGAATTAGGAATCCTT 57.171 30.769 7.30 0.00 34.61 3.36
781 812 9.920946 AGCACAAATAAGAATTAGGAATCCTTA 57.079 29.630 7.30 0.00 34.61 2.69
812 843 9.885934 GAATCATTCATTCTCATCTGAAATGAG 57.114 33.333 8.42 8.42 45.08 2.90
840 871 8.691661 TTAGGAAATCCTTATCAGTAAATGCC 57.308 34.615 7.39 0.00 46.09 4.40
849 880 9.866655 TCCTTATCAGTAAATGCCTTAAATCAT 57.133 29.630 0.00 0.00 0.00 2.45
877 915 6.018469 ACAAATCCCAGAGAATTGAATTCCA 58.982 36.000 13.88 0.00 37.54 3.53
892 931 5.675538 TGAATTCCAAAAACAAATCCCGTT 58.324 33.333 2.27 0.00 0.00 4.44
893 932 5.755861 TGAATTCCAAAAACAAATCCCGTTC 59.244 36.000 2.27 0.00 0.00 3.95
894 933 3.357166 TCCAAAAACAAATCCCGTTCG 57.643 42.857 0.00 0.00 0.00 3.95
926 970 6.128715 GCGTTGATCACAATCTCCTATACATG 60.129 42.308 0.00 0.00 38.32 3.21
928 972 6.423776 TGATCACAATCTCCTATACATGCA 57.576 37.500 0.00 0.00 32.75 3.96
929 973 7.012661 TGATCACAATCTCCTATACATGCAT 57.987 36.000 0.00 0.00 32.75 3.96
930 974 6.877322 TGATCACAATCTCCTATACATGCATG 59.123 38.462 25.09 25.09 32.75 4.06
931 975 4.999311 TCACAATCTCCTATACATGCATGC 59.001 41.667 26.53 11.82 0.00 4.06
932 976 4.155462 CACAATCTCCTATACATGCATGCC 59.845 45.833 26.53 0.00 0.00 4.40
1003 1053 4.127744 TACCCAGCCCAGCCATGC 62.128 66.667 0.00 0.00 0.00 4.06
1038 1088 3.257561 CTCCGGCAACTCATCGCG 61.258 66.667 0.00 0.00 0.00 5.87
1039 1089 3.989698 CTCCGGCAACTCATCGCGT 62.990 63.158 5.77 0.00 0.00 6.01
1040 1090 3.853330 CCGGCAACTCATCGCGTG 61.853 66.667 5.77 3.96 0.00 5.34
1041 1091 4.505217 CGGCAACTCATCGCGTGC 62.505 66.667 5.77 7.37 0.00 5.34
1042 1092 4.505217 GGCAACTCATCGCGTGCG 62.505 66.667 5.77 8.14 41.35 5.34
1043 1093 3.777925 GCAACTCATCGCGTGCGT 61.778 61.111 14.47 2.00 40.74 5.24
1044 1094 2.391821 CAACTCATCGCGTGCGTC 59.608 61.111 14.47 0.00 40.74 5.19
1045 1095 2.809601 AACTCATCGCGTGCGTCC 60.810 61.111 14.47 0.00 40.74 4.79
1046 1096 3.282745 AACTCATCGCGTGCGTCCT 62.283 57.895 14.47 0.00 40.74 3.85
1291 1344 4.129737 GCGTAGACCTGCTCCGCA 62.130 66.667 0.00 0.00 43.53 5.69
1508 1568 9.797556 TGTCTATATACGGCATACATATTTGTC 57.202 33.333 0.00 0.00 37.28 3.18
1558 1621 2.981859 ACGGTGGACTGTGATAATCC 57.018 50.000 0.00 0.00 33.47 3.01
1569 1632 4.649674 ACTGTGATAATCCATCTGTACGGT 59.350 41.667 0.64 0.00 34.46 4.83
1600 1664 3.191581 TGTGGTGTTGTTGTGATTCGTTT 59.808 39.130 0.00 0.00 0.00 3.60
1602 1666 5.106277 TGTGGTGTTGTTGTGATTCGTTTTA 60.106 36.000 0.00 0.00 0.00 1.52
1613 1677 8.760569 GTTGTGATTCGTTTTATGTTTTTGGAT 58.239 29.630 0.00 0.00 0.00 3.41
1628 1692 3.558931 TTGGATGACGATAACTGCCAT 57.441 42.857 0.00 0.00 0.00 4.40
1636 1700 2.164827 ACGATAACTGCCATACGTGTGA 59.835 45.455 14.51 0.00 32.93 3.58
1637 1701 3.181479 ACGATAACTGCCATACGTGTGAT 60.181 43.478 14.51 0.00 32.93 3.06
1643 1707 5.122512 ACTGCCATACGTGTGATATCTAC 57.877 43.478 14.51 2.75 0.00 2.59
1645 1709 3.816523 TGCCATACGTGTGATATCTACGA 59.183 43.478 27.73 17.08 40.01 3.43
1647 1711 4.153655 GCCATACGTGTGATATCTACGAGA 59.846 45.833 27.73 19.16 40.01 4.04
1796 1866 2.725312 GCCCGCATGACCTCTCTCA 61.725 63.158 0.00 0.00 0.00 3.27
2059 2133 5.423931 TGGTCTACTACAGTTGCCATGATTA 59.576 40.000 0.00 0.00 0.00 1.75
2118 2398 4.201951 CCATGTAGGCGTGTGGAC 57.798 61.111 0.00 0.00 33.53 4.02
2128 2408 3.041701 GTGTGGACGACGGTGGTA 58.958 61.111 0.00 0.00 0.00 3.25
2129 2409 1.588082 GTGTGGACGACGGTGGTAT 59.412 57.895 0.00 0.00 0.00 2.73
2130 2410 0.457337 GTGTGGACGACGGTGGTATC 60.457 60.000 0.00 0.00 0.00 2.24
2131 2411 0.609957 TGTGGACGACGGTGGTATCT 60.610 55.000 0.00 0.00 0.00 1.98
2132 2412 0.529378 GTGGACGACGGTGGTATCTT 59.471 55.000 0.00 0.00 0.00 2.40
2133 2413 1.067354 GTGGACGACGGTGGTATCTTT 60.067 52.381 0.00 0.00 0.00 2.52
2134 2414 2.164219 GTGGACGACGGTGGTATCTTTA 59.836 50.000 0.00 0.00 0.00 1.85
2135 2415 2.424601 TGGACGACGGTGGTATCTTTAG 59.575 50.000 0.00 0.00 0.00 1.85
2136 2416 2.223665 GGACGACGGTGGTATCTTTAGG 60.224 54.545 0.00 0.00 0.00 2.69
2137 2417 2.684881 GACGACGGTGGTATCTTTAGGA 59.315 50.000 0.00 0.00 0.00 2.94
2138 2418 2.686915 ACGACGGTGGTATCTTTAGGAG 59.313 50.000 0.00 0.00 0.00 3.69
2139 2419 2.686915 CGACGGTGGTATCTTTAGGAGT 59.313 50.000 0.00 0.00 0.00 3.85
2140 2420 3.129988 CGACGGTGGTATCTTTAGGAGTT 59.870 47.826 0.00 0.00 0.00 3.01
2141 2421 4.430908 GACGGTGGTATCTTTAGGAGTTG 58.569 47.826 0.00 0.00 0.00 3.16
2142 2422 3.836562 ACGGTGGTATCTTTAGGAGTTGT 59.163 43.478 0.00 0.00 0.00 3.32
2143 2423 4.081807 ACGGTGGTATCTTTAGGAGTTGTC 60.082 45.833 0.00 0.00 0.00 3.18
2144 2424 4.081862 CGGTGGTATCTTTAGGAGTTGTCA 60.082 45.833 0.00 0.00 0.00 3.58
2145 2425 5.176592 GGTGGTATCTTTAGGAGTTGTCAC 58.823 45.833 0.00 0.00 0.00 3.67
2146 2426 5.176592 GTGGTATCTTTAGGAGTTGTCACC 58.823 45.833 0.00 0.00 0.00 4.02
2147 2427 5.046520 GTGGTATCTTTAGGAGTTGTCACCT 60.047 44.000 0.00 0.00 38.21 4.00
2148 2428 6.154021 GTGGTATCTTTAGGAGTTGTCACCTA 59.846 42.308 0.00 0.00 36.19 3.08
2149 2429 6.154021 TGGTATCTTTAGGAGTTGTCACCTAC 59.846 42.308 0.00 0.00 36.81 3.18
2150 2430 6.380560 GGTATCTTTAGGAGTTGTCACCTACT 59.619 42.308 0.00 0.00 36.81 2.57
2151 2431 7.559170 GGTATCTTTAGGAGTTGTCACCTACTA 59.441 40.741 0.00 0.00 36.81 1.82
2152 2432 8.964772 GTATCTTTAGGAGTTGTCACCTACTAA 58.035 37.037 0.00 0.00 36.81 2.24
2153 2433 7.224522 TCTTTAGGAGTTGTCACCTACTAAC 57.775 40.000 1.65 0.00 35.55 2.34
2154 2434 6.779049 TCTTTAGGAGTTGTCACCTACTAACA 59.221 38.462 1.65 0.00 35.55 2.41
2155 2435 4.868314 AGGAGTTGTCACCTACTAACAC 57.132 45.455 0.00 0.00 33.06 3.32
2156 2436 4.481072 AGGAGTTGTCACCTACTAACACT 58.519 43.478 0.00 0.00 33.06 3.55
2157 2437 5.638133 AGGAGTTGTCACCTACTAACACTA 58.362 41.667 0.00 0.00 33.06 2.74
2158 2438 5.711036 AGGAGTTGTCACCTACTAACACTAG 59.289 44.000 0.00 0.00 33.06 2.57
2159 2439 5.105837 GGAGTTGTCACCTACTAACACTAGG 60.106 48.000 0.00 0.00 37.40 3.02
2160 2440 4.220163 AGTTGTCACCTACTAACACTAGGC 59.780 45.833 0.00 0.00 35.04 3.93
2161 2441 3.770046 TGTCACCTACTAACACTAGGCA 58.230 45.455 0.00 0.00 35.04 4.75
2162 2442 3.762288 TGTCACCTACTAACACTAGGCAG 59.238 47.826 0.00 0.00 35.04 4.85
2163 2443 3.762823 GTCACCTACTAACACTAGGCAGT 59.237 47.826 0.00 0.00 35.04 4.40
2164 2444 4.220163 GTCACCTACTAACACTAGGCAGTT 59.780 45.833 0.00 0.00 35.04 3.16
2165 2445 4.219944 TCACCTACTAACACTAGGCAGTTG 59.780 45.833 7.49 0.73 35.04 3.16
2166 2446 3.056035 ACCTACTAACACTAGGCAGTTGC 60.056 47.826 7.49 0.00 35.04 4.17
2185 2465 4.551702 TGCCATCTAGCACTACAGAAAA 57.448 40.909 0.00 0.00 38.00 2.29
2210 2490 4.855715 TGGCAAAAATAACATGTTCGGA 57.144 36.364 15.85 0.00 0.00 4.55
2211 2491 5.398603 TGGCAAAAATAACATGTTCGGAT 57.601 34.783 15.85 0.00 0.00 4.18
2217 2497 9.134734 GCAAAAATAACATGTTCGGATAAAGAA 57.865 29.630 15.85 0.00 0.00 2.52
2226 2506 5.305585 TGTTCGGATAAAGAAAGAGTTGCT 58.694 37.500 0.00 0.00 0.00 3.91
2286 2566 3.181477 CCTTCAAAACACATGGCAACTGA 60.181 43.478 0.00 0.00 37.61 3.41
2307 2587 1.303643 GCTTTGGGTGTGGGAGAGG 60.304 63.158 0.00 0.00 0.00 3.69
2308 2588 1.779061 GCTTTGGGTGTGGGAGAGGA 61.779 60.000 0.00 0.00 0.00 3.71
2309 2589 0.326264 CTTTGGGTGTGGGAGAGGAG 59.674 60.000 0.00 0.00 0.00 3.69
2310 2590 0.104672 TTTGGGTGTGGGAGAGGAGA 60.105 55.000 0.00 0.00 0.00 3.71
2311 2591 0.836400 TTGGGTGTGGGAGAGGAGAC 60.836 60.000 0.00 0.00 0.00 3.36
2312 2592 1.229209 GGGTGTGGGAGAGGAGACA 60.229 63.158 0.00 0.00 0.00 3.41
2313 2593 1.261238 GGGTGTGGGAGAGGAGACAG 61.261 65.000 0.00 0.00 0.00 3.51
2314 2594 0.251832 GGTGTGGGAGAGGAGACAGA 60.252 60.000 0.00 0.00 0.00 3.41
2315 2595 0.892063 GTGTGGGAGAGGAGACAGAC 59.108 60.000 0.00 0.00 0.00 3.51
2316 2596 0.609406 TGTGGGAGAGGAGACAGACG 60.609 60.000 0.00 0.00 0.00 4.18
2317 2597 0.609681 GTGGGAGAGGAGACAGACGT 60.610 60.000 0.00 0.00 0.00 4.34
2318 2598 0.609406 TGGGAGAGGAGACAGACGTG 60.609 60.000 0.00 0.00 0.00 4.49
2319 2599 1.509004 GGAGAGGAGACAGACGTGC 59.491 63.158 0.00 0.00 0.00 5.34
2320 2600 1.135731 GAGAGGAGACAGACGTGCG 59.864 63.158 0.00 0.00 0.00 5.34
2321 2601 2.179517 GAGGAGACAGACGTGCGG 59.820 66.667 0.00 0.00 0.00 5.69
2322 2602 3.343788 GAGGAGACAGACGTGCGGG 62.344 68.421 0.00 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.831868 TGGGCAAAGTAAGACTTTTTCTAACT 59.168 34.615 1.85 0.00 45.38 2.24
1 2 7.034685 TGGGCAAAGTAAGACTTTTTCTAAC 57.965 36.000 1.85 0.00 45.38 2.34
47 48 2.173519 CCAAATGCCCTCACAACATCT 58.826 47.619 0.00 0.00 0.00 2.90
55 56 1.887956 GCAGAACTCCAAATGCCCTCA 60.888 52.381 0.00 0.00 32.49 3.86
78 79 1.133407 ACGAACAACCGCAAAACATGT 59.867 42.857 0.00 0.00 0.00 3.21
89 90 2.380084 TAGCAGATCCACGAACAACC 57.620 50.000 0.00 0.00 0.00 3.77
102 103 3.523157 TCTGGATCCCATTGTTTAGCAGA 59.477 43.478 9.90 0.00 30.82 4.26
128 129 4.371624 ACAACTCATCATCTCCCACAAA 57.628 40.909 0.00 0.00 0.00 2.83
138 139 3.819368 TGACCACACAACAACTCATCAT 58.181 40.909 0.00 0.00 0.00 2.45
145 146 1.133982 TGTGCATGACCACACAACAAC 59.866 47.619 0.00 0.00 43.48 3.32
146 147 1.467920 TGTGCATGACCACACAACAA 58.532 45.000 0.00 0.00 43.48 2.83
184 185 7.039853 TGCTCTCATATTCAAGAGATGAGGTAG 60.040 40.741 17.15 12.18 44.43 3.18
185 186 6.779539 TGCTCTCATATTCAAGAGATGAGGTA 59.220 38.462 17.15 9.53 44.43 3.08
186 187 5.601729 TGCTCTCATATTCAAGAGATGAGGT 59.398 40.000 17.15 0.00 44.43 3.85
189 202 6.465084 CCATGCTCTCATATTCAAGAGATGA 58.535 40.000 9.65 0.00 41.28 2.92
202 215 1.817087 AGGATCACCCATGCTCTCAT 58.183 50.000 0.00 0.00 37.41 2.90
208 221 7.530426 AGAAATTTAATAGGATCACCCATGC 57.470 36.000 0.00 0.00 37.41 4.06
224 237 6.658188 ACCGGATTTTGGTCAAGAAATTTA 57.342 33.333 9.46 0.00 33.35 1.40
239 252 5.529581 ACTTTTCAAATGTGACCGGATTT 57.470 34.783 9.46 0.00 31.90 2.17
258 271 8.761575 ATTTGTCGATGCATTTGAATAAACTT 57.238 26.923 0.00 0.00 0.00 2.66
264 277 5.290158 GCTGAATTTGTCGATGCATTTGAAT 59.710 36.000 0.00 0.00 0.00 2.57
277 290 3.120060 AGTTGCTCGATGCTGAATTTGTC 60.120 43.478 8.07 0.00 43.37 3.18
287 311 2.738846 TCTTTCTTCAGTTGCTCGATGC 59.261 45.455 0.00 0.00 43.25 3.91
309 333 2.802816 CGCCCACTTATACTCAATCAGC 59.197 50.000 0.00 0.00 0.00 4.26
322 346 0.037734 CTCCCCTTAAACGCCCACTT 59.962 55.000 0.00 0.00 0.00 3.16
323 347 1.683441 CTCCCCTTAAACGCCCACT 59.317 57.895 0.00 0.00 0.00 4.00
331 355 5.636123 TCTAACATTGTTGCTCCCCTTAAA 58.364 37.500 12.30 0.00 0.00 1.52
341 365 9.840427 ACAAATATTACACTCTAACATTGTTGC 57.160 29.630 12.30 0.00 0.00 4.17
371 395 9.846248 AATGCAGCAGTAGTTCTAATTTAAAAG 57.154 29.630 0.00 0.00 0.00 2.27
429 455 0.038435 TCCGCACGTTCGAATAACCA 60.038 50.000 9.73 0.00 0.00 3.67
432 458 2.068837 AAGTCCGCACGTTCGAATAA 57.931 45.000 9.73 0.00 0.00 1.40
437 463 2.867456 AAATTAAGTCCGCACGTTCG 57.133 45.000 0.00 0.00 0.00 3.95
458 487 6.017440 GCTATGGCATACATCCGACTTAAAAA 60.017 38.462 2.32 0.00 41.03 1.94
459 488 5.468746 GCTATGGCATACATCCGACTTAAAA 59.531 40.000 2.32 0.00 41.03 1.52
462 491 3.366985 CGCTATGGCATACATCCGACTTA 60.367 47.826 2.32 0.00 41.03 2.24
463 492 2.610479 CGCTATGGCATACATCCGACTT 60.610 50.000 2.32 0.00 41.03 3.01
466 495 0.966179 ACGCTATGGCATACATCCGA 59.034 50.000 2.32 0.00 41.03 4.55
492 522 3.070159 CAGACATGGATATGGGAGTCGTT 59.930 47.826 0.00 0.00 38.66 3.85
493 523 2.630098 CAGACATGGATATGGGAGTCGT 59.370 50.000 0.00 0.00 38.66 4.34
496 526 1.345741 CGCAGACATGGATATGGGAGT 59.654 52.381 0.00 0.00 38.66 3.85
502 532 3.501349 ACTAGTCCGCAGACATGGATAT 58.499 45.455 2.32 0.00 46.15 1.63
503 533 2.885266 GACTAGTCCGCAGACATGGATA 59.115 50.000 12.13 0.00 46.15 2.59
528 558 5.072055 TCTACCGTATCCATCCACGAATAA 58.928 41.667 0.00 0.00 40.56 1.40
539 569 3.118702 TCCGCAAATTTCTACCGTATCCA 60.119 43.478 0.00 0.00 0.00 3.41
548 578 7.336679 TCTTCAATTCTGATCCGCAAATTTCTA 59.663 33.333 0.00 0.00 0.00 2.10
566 597 2.689983 CCGGCCTTAAGCATCTTCAATT 59.310 45.455 0.00 0.00 46.50 2.32
578 609 2.883122 ATTGGTTGTACCGGCCTTAA 57.117 45.000 0.00 0.00 42.58 1.85
580 611 2.439409 GTTATTGGTTGTACCGGCCTT 58.561 47.619 0.00 0.00 42.58 4.35
582 613 1.097232 GGTTATTGGTTGTACCGGCC 58.903 55.000 0.00 0.00 42.58 6.13
583 614 1.469703 GTGGTTATTGGTTGTACCGGC 59.530 52.381 0.00 0.00 42.58 6.13
584 615 2.780714 TGTGGTTATTGGTTGTACCGG 58.219 47.619 0.00 0.00 42.58 5.28
585 616 3.364167 CGTTGTGGTTATTGGTTGTACCG 60.364 47.826 0.00 0.00 42.58 4.02
586 617 3.565063 ACGTTGTGGTTATTGGTTGTACC 59.435 43.478 0.00 0.00 39.22 3.34
587 618 4.816786 ACGTTGTGGTTATTGGTTGTAC 57.183 40.909 0.00 0.00 0.00 2.90
588 619 4.447054 CGTACGTTGTGGTTATTGGTTGTA 59.553 41.667 7.22 0.00 0.00 2.41
589 620 3.248125 CGTACGTTGTGGTTATTGGTTGT 59.752 43.478 7.22 0.00 0.00 3.32
590 621 3.801293 CGTACGTTGTGGTTATTGGTTG 58.199 45.455 7.22 0.00 0.00 3.77
591 622 2.223845 GCGTACGTTGTGGTTATTGGTT 59.776 45.455 17.90 0.00 0.00 3.67
592 623 1.799994 GCGTACGTTGTGGTTATTGGT 59.200 47.619 17.90 0.00 0.00 3.67
593 624 1.799403 TGCGTACGTTGTGGTTATTGG 59.201 47.619 17.90 0.00 0.00 3.16
594 625 2.159761 CCTGCGTACGTTGTGGTTATTG 60.160 50.000 17.90 0.00 0.00 1.90
595 626 2.070783 CCTGCGTACGTTGTGGTTATT 58.929 47.619 17.90 0.00 0.00 1.40
596 627 1.717194 CCTGCGTACGTTGTGGTTAT 58.283 50.000 17.90 0.00 0.00 1.89
597 628 0.945265 GCCTGCGTACGTTGTGGTTA 60.945 55.000 17.90 0.00 0.00 2.85
598 629 2.248835 GCCTGCGTACGTTGTGGTT 61.249 57.895 17.90 0.00 0.00 3.67
599 630 2.663852 GCCTGCGTACGTTGTGGT 60.664 61.111 17.90 0.00 0.00 4.16
600 631 3.419759 GGCCTGCGTACGTTGTGG 61.420 66.667 17.90 14.07 0.00 4.17
601 632 3.773630 CGGCCTGCGTACGTTGTG 61.774 66.667 17.90 4.59 0.00 3.33
612 643 1.673009 TTAGTTTTCCGGCGGCCTG 60.673 57.895 23.83 11.22 0.00 4.85
613 644 1.673337 GTTAGTTTTCCGGCGGCCT 60.673 57.895 23.83 15.94 0.00 5.19
614 645 2.872557 GTTAGTTTTCCGGCGGCC 59.127 61.111 23.83 9.54 0.00 6.13
615 646 2.477396 CGTTAGTTTTCCGGCGGC 59.523 61.111 23.83 7.19 0.00 6.53
616 647 2.235536 CTGCGTTAGTTTTCCGGCGG 62.236 60.000 22.51 22.51 0.00 6.13
617 648 1.131826 CTGCGTTAGTTTTCCGGCG 59.868 57.895 0.00 0.00 0.00 6.46
618 649 0.165295 GTCTGCGTTAGTTTTCCGGC 59.835 55.000 0.00 0.00 0.00 6.13
619 650 1.459592 CTGTCTGCGTTAGTTTTCCGG 59.540 52.381 0.00 0.00 0.00 5.14
620 651 1.136336 GCTGTCTGCGTTAGTTTTCCG 60.136 52.381 0.00 0.00 0.00 4.30
621 652 1.197036 GGCTGTCTGCGTTAGTTTTCC 59.803 52.381 0.00 0.00 44.05 3.13
622 653 1.136336 CGGCTGTCTGCGTTAGTTTTC 60.136 52.381 0.00 0.00 44.05 2.29
623 654 0.865769 CGGCTGTCTGCGTTAGTTTT 59.134 50.000 0.00 0.00 44.05 2.43
624 655 1.566018 GCGGCTGTCTGCGTTAGTTT 61.566 55.000 0.00 0.00 44.05 2.66
625 656 2.027625 GCGGCTGTCTGCGTTAGTT 61.028 57.895 0.00 0.00 44.05 2.24
626 657 2.432628 GCGGCTGTCTGCGTTAGT 60.433 61.111 0.00 0.00 44.05 2.24
632 663 4.724602 TCGAGTGCGGCTGTCTGC 62.725 66.667 0.00 0.00 44.80 4.26
633 664 2.807045 GTCGAGTGCGGCTGTCTG 60.807 66.667 0.00 0.00 39.48 3.51
634 665 2.363711 TTTGTCGAGTGCGGCTGTCT 62.364 55.000 0.00 0.00 43.87 3.41
635 666 1.891060 CTTTGTCGAGTGCGGCTGTC 61.891 60.000 0.00 0.00 43.87 3.51
636 667 1.956170 CTTTGTCGAGTGCGGCTGT 60.956 57.895 0.00 0.00 43.87 4.40
637 668 1.621301 CTCTTTGTCGAGTGCGGCTG 61.621 60.000 0.00 0.00 43.87 4.85
638 669 1.373497 CTCTTTGTCGAGTGCGGCT 60.373 57.895 0.00 0.00 43.87 5.52
639 670 1.372997 TCTCTTTGTCGAGTGCGGC 60.373 57.895 0.00 0.00 43.78 6.53
640 671 0.318699 TGTCTCTTTGTCGAGTGCGG 60.319 55.000 0.00 0.00 38.28 5.69
641 672 0.778815 GTGTCTCTTTGTCGAGTGCG 59.221 55.000 0.00 0.00 39.35 5.34
642 673 1.140816 GGTGTCTCTTTGTCGAGTGC 58.859 55.000 0.00 0.00 32.83 4.40
643 674 2.128035 GTGGTGTCTCTTTGTCGAGTG 58.872 52.381 0.00 0.00 32.83 3.51
644 675 1.068741 GGTGGTGTCTCTTTGTCGAGT 59.931 52.381 0.00 0.00 32.83 4.18
645 676 1.784525 GGTGGTGTCTCTTTGTCGAG 58.215 55.000 0.00 0.00 0.00 4.04
646 677 0.031585 CGGTGGTGTCTCTTTGTCGA 59.968 55.000 0.00 0.00 0.00 4.20
647 678 0.031585 TCGGTGGTGTCTCTTTGTCG 59.968 55.000 0.00 0.00 0.00 4.35
648 679 1.784525 CTCGGTGGTGTCTCTTTGTC 58.215 55.000 0.00 0.00 0.00 3.18
649 680 0.249911 GCTCGGTGGTGTCTCTTTGT 60.250 55.000 0.00 0.00 0.00 2.83
650 681 0.951040 GGCTCGGTGGTGTCTCTTTG 60.951 60.000 0.00 0.00 0.00 2.77
651 682 1.371558 GGCTCGGTGGTGTCTCTTT 59.628 57.895 0.00 0.00 0.00 2.52
652 683 2.584391 GGGCTCGGTGGTGTCTCTT 61.584 63.158 0.00 0.00 0.00 2.85
653 684 2.997897 GGGCTCGGTGGTGTCTCT 60.998 66.667 0.00 0.00 0.00 3.10
654 685 3.311110 TGGGCTCGGTGGTGTCTC 61.311 66.667 0.00 0.00 0.00 3.36
655 686 3.626924 GTGGGCTCGGTGGTGTCT 61.627 66.667 0.00 0.00 0.00 3.41
656 687 3.883744 CTGTGGGCTCGGTGGTGTC 62.884 68.421 0.00 0.00 0.00 3.67
657 688 3.941188 CTGTGGGCTCGGTGGTGT 61.941 66.667 0.00 0.00 0.00 4.16
658 689 2.958578 AAACTGTGGGCTCGGTGGTG 62.959 60.000 0.00 0.00 0.00 4.17
659 690 2.752807 AAACTGTGGGCTCGGTGGT 61.753 57.895 0.00 0.00 0.00 4.16
660 691 2.113139 AAACTGTGGGCTCGGTGG 59.887 61.111 0.00 0.00 0.00 4.61
661 692 2.908073 GCAAACTGTGGGCTCGGTG 61.908 63.158 0.00 0.00 0.00 4.94
662 693 2.594592 GCAAACTGTGGGCTCGGT 60.595 61.111 0.00 0.00 0.00 4.69
663 694 2.133742 CTTGCAAACTGTGGGCTCGG 62.134 60.000 0.00 0.00 0.00 4.63
664 695 1.165907 TCTTGCAAACTGTGGGCTCG 61.166 55.000 0.00 0.00 0.00 5.03
665 696 1.032014 TTCTTGCAAACTGTGGGCTC 58.968 50.000 0.00 0.00 0.00 4.70
666 697 1.708341 ATTCTTGCAAACTGTGGGCT 58.292 45.000 0.00 0.00 0.00 5.19
667 698 2.531522 AATTCTTGCAAACTGTGGGC 57.468 45.000 0.00 0.00 0.00 5.36
668 699 5.355596 TGTAAAATTCTTGCAAACTGTGGG 58.644 37.500 0.00 0.00 0.00 4.61
669 700 5.050837 GCTGTAAAATTCTTGCAAACTGTGG 60.051 40.000 0.00 0.00 0.00 4.17
670 701 5.519566 TGCTGTAAAATTCTTGCAAACTGTG 59.480 36.000 0.00 0.00 0.00 3.66
671 702 5.659463 TGCTGTAAAATTCTTGCAAACTGT 58.341 33.333 0.00 0.00 0.00 3.55
672 703 6.586868 TTGCTGTAAAATTCTTGCAAACTG 57.413 33.333 0.00 0.00 37.46 3.16
673 704 7.790823 AATTGCTGTAAAATTCTTGCAAACT 57.209 28.000 0.00 0.00 42.39 2.66
681 712 9.777297 ACCACAAATTAATTGCTGTAAAATTCT 57.223 25.926 0.39 0.00 43.13 2.40
684 715 9.553064 TCAACCACAAATTAATTGCTGTAAAAT 57.447 25.926 0.39 0.00 43.13 1.82
685 716 8.948631 TCAACCACAAATTAATTGCTGTAAAA 57.051 26.923 0.39 0.00 43.13 1.52
686 717 8.417106 TCTCAACCACAAATTAATTGCTGTAAA 58.583 29.630 0.39 0.00 43.13 2.01
687 718 7.946207 TCTCAACCACAAATTAATTGCTGTAA 58.054 30.769 0.39 0.00 43.13 2.41
688 719 7.517614 TCTCAACCACAAATTAATTGCTGTA 57.482 32.000 0.39 0.00 43.13 2.74
689 720 6.403866 TCTCAACCACAAATTAATTGCTGT 57.596 33.333 0.39 0.48 43.13 4.40
690 721 6.925165 AGTTCTCAACCACAAATTAATTGCTG 59.075 34.615 0.39 0.00 43.13 4.41
691 722 7.054491 AGTTCTCAACCACAAATTAATTGCT 57.946 32.000 0.39 0.00 43.13 3.91
692 723 8.699749 GTTAGTTCTCAACCACAAATTAATTGC 58.300 33.333 0.39 0.00 43.13 3.56
693 724 9.191995 GGTTAGTTCTCAACCACAAATTAATTG 57.808 33.333 0.39 0.00 44.12 2.32
694 725 8.364894 GGGTTAGTTCTCAACCACAAATTAATT 58.635 33.333 6.58 0.00 46.10 1.40
695 726 7.507616 TGGGTTAGTTCTCAACCACAAATTAAT 59.492 33.333 6.58 0.00 46.10 1.40
696 727 6.834451 TGGGTTAGTTCTCAACCACAAATTAA 59.166 34.615 6.58 0.00 46.10 1.40
697 728 6.366340 TGGGTTAGTTCTCAACCACAAATTA 58.634 36.000 6.58 0.00 46.10 1.40
698 729 5.205056 TGGGTTAGTTCTCAACCACAAATT 58.795 37.500 6.58 0.00 46.10 1.82
699 730 4.798882 TGGGTTAGTTCTCAACCACAAAT 58.201 39.130 6.58 0.00 46.10 2.32
700 731 4.237976 TGGGTTAGTTCTCAACCACAAA 57.762 40.909 6.58 0.00 46.10 2.83
701 732 3.935818 TGGGTTAGTTCTCAACCACAA 57.064 42.857 6.58 0.00 46.10 3.33
702 733 3.547746 GTTGGGTTAGTTCTCAACCACA 58.452 45.455 6.58 0.20 46.10 4.17
703 734 2.546789 CGTTGGGTTAGTTCTCAACCAC 59.453 50.000 6.58 0.00 46.10 4.16
704 735 2.171027 ACGTTGGGTTAGTTCTCAACCA 59.829 45.455 6.58 0.00 46.10 3.67
705 736 2.842457 ACGTTGGGTTAGTTCTCAACC 58.158 47.619 4.25 0.00 43.99 3.77
706 737 4.209911 GTGTACGTTGGGTTAGTTCTCAAC 59.790 45.833 0.00 0.00 36.93 3.18
707 738 4.141981 TGTGTACGTTGGGTTAGTTCTCAA 60.142 41.667 0.00 0.00 0.00 3.02
708 739 3.384146 TGTGTACGTTGGGTTAGTTCTCA 59.616 43.478 0.00 0.00 0.00 3.27
709 740 3.981211 TGTGTACGTTGGGTTAGTTCTC 58.019 45.455 0.00 0.00 0.00 2.87
710 741 3.243975 CCTGTGTACGTTGGGTTAGTTCT 60.244 47.826 0.00 0.00 0.00 3.01
711 742 3.062042 CCTGTGTACGTTGGGTTAGTTC 58.938 50.000 0.00 0.00 0.00 3.01
712 743 2.807837 GCCTGTGTACGTTGGGTTAGTT 60.808 50.000 0.00 0.00 0.00 2.24
713 744 1.270465 GCCTGTGTACGTTGGGTTAGT 60.270 52.381 0.00 0.00 0.00 2.24
714 745 1.435577 GCCTGTGTACGTTGGGTTAG 58.564 55.000 0.00 0.00 0.00 2.34
715 746 0.035176 GGCCTGTGTACGTTGGGTTA 59.965 55.000 0.00 0.00 0.00 2.85
716 747 1.228033 GGCCTGTGTACGTTGGGTT 60.228 57.895 0.00 0.00 0.00 4.11
717 748 2.428622 GGCCTGTGTACGTTGGGT 59.571 61.111 0.00 0.00 0.00 4.51
718 749 2.740826 CGGCCTGTGTACGTTGGG 60.741 66.667 0.00 0.00 0.00 4.12
719 750 3.419759 GCGGCCTGTGTACGTTGG 61.420 66.667 0.00 0.00 0.00 3.77
720 751 3.419759 GGCGGCCTGTGTACGTTG 61.420 66.667 12.87 0.00 0.00 4.10
724 755 4.814294 CTCCGGCGGCCTGTGTAC 62.814 72.222 23.83 0.00 0.00 2.90
725 756 3.942377 TACTCCGGCGGCCTGTGTA 62.942 63.158 23.83 17.94 0.00 2.90
727 758 4.514577 CTACTCCGGCGGCCTGTG 62.515 72.222 23.83 13.94 0.00 3.66
732 763 4.752879 TTGTGCTACTCCGGCGGC 62.753 66.667 23.83 9.90 0.00 6.53
733 764 1.429148 GATTTGTGCTACTCCGGCGG 61.429 60.000 22.51 22.51 0.00 6.13
734 765 0.739462 TGATTTGTGCTACTCCGGCG 60.739 55.000 0.00 0.00 0.00 6.46
735 766 1.668419 ATGATTTGTGCTACTCCGGC 58.332 50.000 0.00 0.00 0.00 6.13
736 767 2.802816 GCTATGATTTGTGCTACTCCGG 59.197 50.000 0.00 0.00 0.00 5.14
737 768 3.246226 GTGCTATGATTTGTGCTACTCCG 59.754 47.826 0.00 0.00 0.00 4.63
738 769 4.191544 TGTGCTATGATTTGTGCTACTCC 58.808 43.478 0.00 0.00 0.00 3.85
739 770 5.801350 TTGTGCTATGATTTGTGCTACTC 57.199 39.130 0.00 0.00 0.00 2.59
740 771 6.764308 ATTTGTGCTATGATTTGTGCTACT 57.236 33.333 0.00 0.00 0.00 2.57
741 772 8.397906 TCTTATTTGTGCTATGATTTGTGCTAC 58.602 33.333 0.00 0.00 0.00 3.58
742 773 8.504812 TCTTATTTGTGCTATGATTTGTGCTA 57.495 30.769 0.00 0.00 0.00 3.49
743 774 7.395190 TCTTATTTGTGCTATGATTTGTGCT 57.605 32.000 0.00 0.00 0.00 4.40
744 775 8.638685 ATTCTTATTTGTGCTATGATTTGTGC 57.361 30.769 0.00 0.00 0.00 4.57
754 785 9.920946 AAGGATTCCTAATTCTTATTTGTGCTA 57.079 29.630 5.43 0.00 34.92 3.49
755 786 8.829373 AAGGATTCCTAATTCTTATTTGTGCT 57.171 30.769 5.43 0.00 34.92 4.40
782 813 9.910267 TTTCAGATGAGAATGAATGATTCCTAA 57.090 29.630 2.26 0.00 41.47 2.69
784 815 8.851145 CATTTCAGATGAGAATGAATGATTCCT 58.149 33.333 2.26 0.00 41.47 3.36
785 816 8.847196 TCATTTCAGATGAGAATGAATGATTCC 58.153 33.333 2.26 0.00 41.47 3.01
786 817 9.885934 CTCATTTCAGATGAGAATGAATGATTC 57.114 33.333 9.81 0.00 46.25 2.52
828 859 8.571336 GTGCTATGATTTAAGGCATTTACTGAT 58.429 33.333 0.00 0.00 35.37 2.90
840 871 7.500227 TCTCTGGGATTTGTGCTATGATTTAAG 59.500 37.037 0.00 0.00 0.00 1.85
849 880 5.178096 TCAATTCTCTGGGATTTGTGCTA 57.822 39.130 10.87 0.00 36.92 3.49
877 915 4.839668 TCATCGAACGGGATTTGTTTTT 57.160 36.364 0.00 0.00 0.00 1.94
892 931 2.615869 TGTGATCAACGCATTCATCGA 58.384 42.857 0.00 0.00 33.83 3.59
893 932 3.388149 TTGTGATCAACGCATTCATCG 57.612 42.857 0.00 0.00 38.84 3.84
894 933 5.165911 AGATTGTGATCAACGCATTCATC 57.834 39.130 0.00 0.00 39.98 2.92
926 970 0.803380 GTTTGGCTTCATCGGCATGC 60.803 55.000 9.90 9.90 39.34 4.06
928 972 1.802636 CGTTTGGCTTCATCGGCAT 59.197 52.632 0.00 0.00 39.34 4.40
929 973 2.976840 GCGTTTGGCTTCATCGGCA 61.977 57.895 0.00 0.00 39.11 5.69
930 974 2.202479 GCGTTTGGCTTCATCGGC 60.202 61.111 0.00 0.00 39.11 5.54
948 992 3.963476 TTTGGTTTCTGGGGAGAAGAA 57.037 42.857 0.00 0.00 31.85 2.52
949 993 4.601857 AGTATTTGGTTTCTGGGGAGAAGA 59.398 41.667 0.00 0.00 0.00 2.87
950 994 4.923415 AGTATTTGGTTTCTGGGGAGAAG 58.077 43.478 0.00 0.00 0.00 2.85
951 995 5.572885 GCTAGTATTTGGTTTCTGGGGAGAA 60.573 44.000 0.00 0.00 0.00 2.87
1038 1088 1.207593 GAACATGCACAGGACGCAC 59.792 57.895 0.00 0.00 43.35 5.34
1039 1089 1.965930 GGAACATGCACAGGACGCA 60.966 57.895 0.00 0.00 44.94 5.24
1040 1090 1.639298 GAGGAACATGCACAGGACGC 61.639 60.000 0.00 0.00 0.00 5.19
1041 1091 1.021390 GGAGGAACATGCACAGGACG 61.021 60.000 0.00 0.00 0.00 4.79
1042 1092 0.326264 AGGAGGAACATGCACAGGAC 59.674 55.000 0.00 0.00 0.00 3.85
1043 1093 0.615331 GAGGAGGAACATGCACAGGA 59.385 55.000 0.00 0.00 0.00 3.86
1044 1094 0.393537 GGAGGAGGAACATGCACAGG 60.394 60.000 0.00 0.00 0.00 4.00
1045 1095 0.617413 AGGAGGAGGAACATGCACAG 59.383 55.000 0.00 0.00 0.00 3.66
1046 1096 0.325933 CAGGAGGAGGAACATGCACA 59.674 55.000 0.00 0.00 0.00 4.57
1270 1323 2.202623 GAGCAGGTCTACGCACGG 60.203 66.667 0.00 0.00 0.00 4.94
1360 1415 1.745489 GTTCCTGGTCGTGATGCCC 60.745 63.158 0.00 0.00 0.00 5.36
1493 1553 7.491682 ACCAAAAGATGACAAATATGTATGCC 58.508 34.615 0.00 0.00 40.74 4.40
1508 1568 2.738846 CTGAGTCCACGACCAAAAGATG 59.261 50.000 0.00 0.00 32.18 2.90
1558 1621 1.516386 AAGCGCGACCGTACAGATG 60.516 57.895 12.10 0.00 36.67 2.90
1569 1632 2.512745 AACACCACACAAGCGCGA 60.513 55.556 12.10 0.00 0.00 5.87
1600 1664 7.247728 GCAGTTATCGTCATCCAAAAACATAA 58.752 34.615 0.00 0.00 0.00 1.90
1602 1666 5.393027 GGCAGTTATCGTCATCCAAAAACAT 60.393 40.000 0.00 0.00 0.00 2.71
1613 1677 2.164827 ACACGTATGGCAGTTATCGTCA 59.835 45.455 0.00 0.00 0.00 4.35
1628 1692 7.412672 GCACATATCTCGTAGATATCACACGTA 60.413 40.741 21.85 15.02 42.61 3.57
1636 1700 3.694566 TGCGGCACATATCTCGTAGATAT 59.305 43.478 0.00 10.00 46.01 1.63
1637 1701 3.078837 TGCGGCACATATCTCGTAGATA 58.921 45.455 0.00 6.93 41.06 1.98
1643 1707 2.932083 GCGTGCGGCACATATCTCG 61.932 63.158 30.23 16.80 42.87 4.04
1645 1709 2.588877 GGCGTGCGGCACATATCT 60.589 61.111 30.23 0.00 46.16 1.98
1719 1783 2.030562 CACCGAACGTGAGGGCTT 59.969 61.111 13.25 0.00 46.20 4.35
1785 1855 2.041115 CGACGGCTGAGAGAGGTCA 61.041 63.158 0.00 0.00 0.00 4.02
1838 1908 3.626924 GGGAGGCGTGGTGACTGT 61.627 66.667 0.00 0.00 34.35 3.55
1851 1921 1.746615 CCATGACAACTGCGGGGAG 60.747 63.158 0.00 0.00 0.00 4.30
1979 2053 2.256306 TGGCATCTGACACTTGACCTA 58.744 47.619 0.00 0.00 0.00 3.08
2059 2133 3.889538 GGTGGCAACTCCTAAAGTTTTCT 59.110 43.478 0.00 0.00 46.26 2.52
2111 2391 0.457337 GATACCACCGTCGTCCACAC 60.457 60.000 0.00 0.00 0.00 3.82
2112 2392 0.609957 AGATACCACCGTCGTCCACA 60.610 55.000 0.00 0.00 0.00 4.17
2113 2393 0.529378 AAGATACCACCGTCGTCCAC 59.471 55.000 0.00 0.00 0.00 4.02
2114 2394 1.259609 AAAGATACCACCGTCGTCCA 58.740 50.000 0.00 0.00 0.00 4.02
2115 2395 2.223665 CCTAAAGATACCACCGTCGTCC 60.224 54.545 0.00 0.00 0.00 4.79
2116 2396 2.684881 TCCTAAAGATACCACCGTCGTC 59.315 50.000 0.00 0.00 0.00 4.20
2117 2397 2.686915 CTCCTAAAGATACCACCGTCGT 59.313 50.000 0.00 0.00 0.00 4.34
2118 2398 2.686915 ACTCCTAAAGATACCACCGTCG 59.313 50.000 0.00 0.00 0.00 5.12
2119 2399 4.081807 ACAACTCCTAAAGATACCACCGTC 60.082 45.833 0.00 0.00 0.00 4.79
2120 2400 3.836562 ACAACTCCTAAAGATACCACCGT 59.163 43.478 0.00 0.00 0.00 4.83
2121 2401 4.081862 TGACAACTCCTAAAGATACCACCG 60.082 45.833 0.00 0.00 0.00 4.94
2122 2402 5.176592 GTGACAACTCCTAAAGATACCACC 58.823 45.833 0.00 0.00 0.00 4.61
2123 2403 5.046520 AGGTGACAACTCCTAAAGATACCAC 60.047 44.000 0.00 0.00 38.11 4.16
2124 2404 5.091552 AGGTGACAACTCCTAAAGATACCA 58.908 41.667 0.00 0.00 38.11 3.25
2125 2405 5.678955 AGGTGACAACTCCTAAAGATACC 57.321 43.478 0.00 0.00 38.11 2.73
2126 2406 7.407393 AGTAGGTGACAACTCCTAAAGATAC 57.593 40.000 0.00 0.00 41.78 2.24
2127 2407 8.964772 GTTAGTAGGTGACAACTCCTAAAGATA 58.035 37.037 7.08 0.00 41.78 1.98
2128 2408 7.453752 TGTTAGTAGGTGACAACTCCTAAAGAT 59.546 37.037 7.08 0.00 41.78 2.40
2129 2409 6.779049 TGTTAGTAGGTGACAACTCCTAAAGA 59.221 38.462 7.08 0.00 41.78 2.52
2130 2410 6.867293 GTGTTAGTAGGTGACAACTCCTAAAG 59.133 42.308 7.08 0.00 41.78 1.85
2131 2411 6.552350 AGTGTTAGTAGGTGACAACTCCTAAA 59.448 38.462 7.08 0.00 41.78 1.85
2132 2412 6.073314 AGTGTTAGTAGGTGACAACTCCTAA 58.927 40.000 0.00 0.00 41.78 2.69
2133 2413 5.638133 AGTGTTAGTAGGTGACAACTCCTA 58.362 41.667 0.00 0.00 40.07 2.94
2134 2414 4.481072 AGTGTTAGTAGGTGACAACTCCT 58.519 43.478 0.00 0.00 41.91 3.69
2135 2415 4.868314 AGTGTTAGTAGGTGACAACTCC 57.132 45.455 0.00 0.00 0.00 3.85
2136 2416 5.621781 GCCTAGTGTTAGTAGGTGACAACTC 60.622 48.000 0.00 0.00 42.16 3.01
2137 2417 4.220163 GCCTAGTGTTAGTAGGTGACAACT 59.780 45.833 0.00 0.00 42.16 3.16
2138 2418 4.021719 TGCCTAGTGTTAGTAGGTGACAAC 60.022 45.833 10.53 0.00 42.16 3.32
2139 2419 4.154176 TGCCTAGTGTTAGTAGGTGACAA 58.846 43.478 10.53 0.00 42.16 3.18
2140 2420 3.762288 CTGCCTAGTGTTAGTAGGTGACA 59.238 47.826 10.53 1.59 42.16 3.58
2141 2421 3.762823 ACTGCCTAGTGTTAGTAGGTGAC 59.237 47.826 10.53 0.00 42.16 3.67
2142 2422 4.043608 ACTGCCTAGTGTTAGTAGGTGA 57.956 45.455 10.53 0.00 42.16 4.02
2143 2423 4.495422 CAACTGCCTAGTGTTAGTAGGTG 58.505 47.826 10.53 7.20 42.16 4.00
2144 2424 3.056035 GCAACTGCCTAGTGTTAGTAGGT 60.056 47.826 10.53 0.00 42.16 3.08
2145 2425 3.522553 GCAACTGCCTAGTGTTAGTAGG 58.477 50.000 5.53 5.53 42.87 3.18
2159 2439 1.936547 GTAGTGCTAGATGGCAACTGC 59.063 52.381 7.62 9.44 44.18 4.40
2160 2440 3.118992 TCTGTAGTGCTAGATGGCAACTG 60.119 47.826 7.62 0.00 44.18 3.16
2161 2441 3.099905 TCTGTAGTGCTAGATGGCAACT 58.900 45.455 1.95 1.95 44.18 3.16
2162 2442 3.526931 TCTGTAGTGCTAGATGGCAAC 57.473 47.619 0.00 0.00 44.18 4.17
2163 2443 4.551702 TTTCTGTAGTGCTAGATGGCAA 57.448 40.909 0.00 0.00 44.18 4.52
2164 2444 4.551702 TTTTCTGTAGTGCTAGATGGCA 57.448 40.909 0.00 0.00 40.15 4.92
2165 2445 4.695455 TGTTTTTCTGTAGTGCTAGATGGC 59.305 41.667 0.00 0.00 0.00 4.40
2166 2446 6.183360 CCATGTTTTTCTGTAGTGCTAGATGG 60.183 42.308 0.00 0.00 0.00 3.51
2167 2447 6.676456 GCCATGTTTTTCTGTAGTGCTAGATG 60.676 42.308 0.00 0.00 0.00 2.90
2168 2448 5.355350 GCCATGTTTTTCTGTAGTGCTAGAT 59.645 40.000 0.00 0.00 0.00 1.98
2169 2449 4.695455 GCCATGTTTTTCTGTAGTGCTAGA 59.305 41.667 0.00 0.00 0.00 2.43
2170 2450 4.455533 TGCCATGTTTTTCTGTAGTGCTAG 59.544 41.667 0.00 0.00 0.00 3.42
2263 2543 3.030291 AGTTGCCATGTGTTTTGAAGGA 58.970 40.909 0.00 0.00 0.00 3.36
2267 2547 2.757314 TGTCAGTTGCCATGTGTTTTGA 59.243 40.909 0.00 0.00 0.00 2.69
2286 2566 1.151450 CTCCCACACCCAAAGCTGT 59.849 57.895 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.