Multiple sequence alignment - TraesCS3B01G558200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G558200 chr3B 100.000 4130 0 0 1 4130 792490380 792486251 0.000000e+00 7627.0
1 TraesCS3B01G558200 chr3B 96.552 58 2 0 4073 4130 793660616 793660673 3.400000e-16 97.1
2 TraesCS3B01G558200 chr3B 93.333 60 2 2 4073 4130 793550137 793550196 2.050000e-13 87.9
3 TraesCS3B01G558200 chr3B 93.333 60 2 2 4073 4130 793632597 793632656 2.050000e-13 87.9
4 TraesCS3B01G558200 chr3B 93.333 60 2 1 4073 4130 793688186 793688245 2.050000e-13 87.9
5 TraesCS3B01G558200 chr3B 90.323 62 2 2 4073 4130 793578092 793578153 1.230000e-10 78.7
6 TraesCS3B01G558200 chr3B 94.000 50 2 1 4073 4121 793605715 793605764 1.590000e-09 75.0
7 TraesCS3B01G558200 chr3D 96.795 4087 119 10 1 4080 74632840 74628759 0.000000e+00 6811.0
8 TraesCS3B01G558200 chr3D 87.985 1573 156 20 564 2126 268046880 268048429 0.000000e+00 1827.0
9 TraesCS3B01G558200 chr3D 84.646 1257 153 29 2118 3349 268049602 268050843 0.000000e+00 1216.0
10 TraesCS3B01G558200 chr3D 81.903 1072 157 27 2303 3349 16421626 16420567 0.000000e+00 870.0
11 TraesCS3B01G558200 chr3D 90.253 554 54 0 2189 2742 2354552 2353999 0.000000e+00 725.0
12 TraesCS3B01G558200 chr3D 85.746 456 63 2 2715 3169 42392100 42391646 8.030000e-132 481.0
13 TraesCS3B01G558200 chr5D 94.857 3753 167 12 1 3737 24806687 24810429 0.000000e+00 5838.0
14 TraesCS3B01G558200 chr5D 89.431 492 45 5 3199 3684 505376127 505375637 7.590000e-172 614.0
15 TraesCS3B01G558200 chr5D 89.024 492 45 6 3199 3684 522238534 522238046 5.910000e-168 601.0
16 TraesCS3B01G558200 chr5D 85.343 539 48 23 308 835 522242152 522241634 2.830000e-146 529.0
17 TraesCS3B01G558200 chr5D 92.364 275 19 2 3772 4044 24810427 24810701 1.390000e-104 390.0
18 TraesCS3B01G558200 chr5D 86.269 335 44 2 3742 4074 505375624 505375290 3.030000e-96 363.0
19 TraesCS3B01G558200 chr5D 84.726 347 41 8 214 552 505378098 505377756 1.840000e-88 337.0
20 TraesCS3B01G558200 chr5D 90.667 150 11 2 10 157 505378243 505378095 3.260000e-46 196.0
21 TraesCS3B01G558200 chr5D 88.667 150 15 1 10 157 522242356 522242207 9.120000e-42 182.0
22 TraesCS3B01G558200 chr5D 92.105 114 7 2 3086 3197 522241609 522241496 4.270000e-35 159.0
23 TraesCS3B01G558200 chr5D 91.228 114 8 2 3086 3197 505377498 505377385 1.990000e-33 154.0
24 TraesCS3B01G558200 chr7B 88.318 2705 273 17 635 3328 645128677 645131349 0.000000e+00 3205.0
25 TraesCS3B01G558200 chr7B 95.787 902 30 6 3016 3913 705818285 705817388 0.000000e+00 1448.0
26 TraesCS3B01G558200 chr7B 96.460 113 4 0 3965 4077 705817130 705817018 1.960000e-43 187.0
27 TraesCS3B01G558200 chr7B 87.179 117 11 3 1 113 474278403 474278287 3.350000e-26 130.0
28 TraesCS3B01G558200 chr5B 87.869 2539 270 23 564 3094 317269855 317272363 0.000000e+00 2948.0
29 TraesCS3B01G558200 chr5B 87.327 939 89 14 3150 4077 470060698 470061617 0.000000e+00 1048.0
30 TraesCS3B01G558200 chr5B 84.923 325 22 19 480 795 470060383 470060689 1.870000e-78 303.0
31 TraesCS3B01G558200 chr5B 95.062 81 4 0 310 390 470060211 470060291 1.210000e-25 128.0
32 TraesCS3B01G558200 chr1B 88.862 1257 124 8 630 1884 31159796 31158554 0.000000e+00 1531.0
33 TraesCS3B01G558200 chr1B 88.350 824 89 7 2235 3055 31158524 31157705 0.000000e+00 983.0
34 TraesCS3B01G558200 chr6D 85.092 1516 190 24 1857 3349 444668103 444666601 0.000000e+00 1515.0
35 TraesCS3B01G558200 chr6D 86.873 1295 145 13 569 1857 444669696 444668421 0.000000e+00 1426.0
36 TraesCS3B01G558200 chr7D 77.835 2125 414 40 950 3057 540516399 540518483 0.000000e+00 1262.0
37 TraesCS3B01G558200 chr7D 89.024 492 47 5 3199 3684 454504548 454504058 1.640000e-168 603.0
38 TraesCS3B01G558200 chr7D 84.455 431 38 21 415 835 454506354 454505943 8.320000e-107 398.0
39 TraesCS3B01G558200 chr7D 84.118 340 52 2 3742 4079 454504045 454503706 1.110000e-85 327.0
40 TraesCS3B01G558200 chr3A 77.693 2089 415 38 950 3025 60779843 60781893 0.000000e+00 1229.0
41 TraesCS3B01G558200 chr2D 89.634 492 44 5 3199 3684 621867743 621868233 1.630000e-173 619.0
42 TraesCS3B01G558200 chr2D 84.069 634 61 26 214 835 621865743 621866348 3.580000e-160 575.0
43 TraesCS3B01G558200 chr2D 86.686 338 41 4 3742 4077 621868246 621868581 5.040000e-99 372.0
44 TraesCS3B01G558200 chr2D 89.375 160 13 3 2 157 621865587 621865746 9.060000e-47 198.0
45 TraesCS3B01G558200 chr2D 92.105 114 7 2 3086 3197 621866373 621866486 4.270000e-35 159.0
46 TraesCS3B01G558200 chr4D 89.431 492 45 5 3199 3684 138692119 138692609 7.590000e-172 614.0
47 TraesCS3B01G558200 chr4D 84.518 633 52 27 214 835 138690127 138690724 5.950000e-163 584.0
48 TraesCS3B01G558200 chr4D 86.136 339 42 4 3742 4077 138692622 138692958 1.090000e-95 361.0
49 TraesCS3B01G558200 chr4D 88.750 160 14 3 2 157 138689971 138690130 4.210000e-45 193.0
50 TraesCS3B01G558200 chr4D 91.228 114 8 2 3086 3197 138690749 138690862 1.990000e-33 154.0
51 TraesCS3B01G558200 chr1D 80.573 314 35 16 3583 3891 383311563 383311855 6.950000e-53 219.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G558200 chr3B 792486251 792490380 4129 True 7627.000000 7627 100.000000 1 4130 1 chr3B.!!$R1 4129
1 TraesCS3B01G558200 chr3D 74628759 74632840 4081 True 6811.000000 6811 96.795000 1 4080 1 chr3D.!!$R4 4079
2 TraesCS3B01G558200 chr3D 268046880 268050843 3963 False 1521.500000 1827 86.315500 564 3349 2 chr3D.!!$F1 2785
3 TraesCS3B01G558200 chr3D 16420567 16421626 1059 True 870.000000 870 81.903000 2303 3349 1 chr3D.!!$R2 1046
4 TraesCS3B01G558200 chr3D 2353999 2354552 553 True 725.000000 725 90.253000 2189 2742 1 chr3D.!!$R1 553
5 TraesCS3B01G558200 chr5D 24806687 24810701 4014 False 3114.000000 5838 93.610500 1 4044 2 chr5D.!!$F1 4043
6 TraesCS3B01G558200 chr5D 522238046 522242356 4310 True 367.750000 601 88.784750 10 3684 4 chr5D.!!$R2 3674
7 TraesCS3B01G558200 chr5D 505375290 505378243 2953 True 332.800000 614 88.464200 10 4074 5 chr5D.!!$R1 4064
8 TraesCS3B01G558200 chr7B 645128677 645131349 2672 False 3205.000000 3205 88.318000 635 3328 1 chr7B.!!$F1 2693
9 TraesCS3B01G558200 chr7B 705817018 705818285 1267 True 817.500000 1448 96.123500 3016 4077 2 chr7B.!!$R2 1061
10 TraesCS3B01G558200 chr5B 317269855 317272363 2508 False 2948.000000 2948 87.869000 564 3094 1 chr5B.!!$F1 2530
11 TraesCS3B01G558200 chr5B 470060211 470061617 1406 False 493.000000 1048 89.104000 310 4077 3 chr5B.!!$F2 3767
12 TraesCS3B01G558200 chr1B 31157705 31159796 2091 True 1257.000000 1531 88.606000 630 3055 2 chr1B.!!$R1 2425
13 TraesCS3B01G558200 chr6D 444666601 444669696 3095 True 1470.500000 1515 85.982500 569 3349 2 chr6D.!!$R1 2780
14 TraesCS3B01G558200 chr7D 540516399 540518483 2084 False 1262.000000 1262 77.835000 950 3057 1 chr7D.!!$F1 2107
15 TraesCS3B01G558200 chr7D 454503706 454506354 2648 True 442.666667 603 85.865667 415 4079 3 chr7D.!!$R1 3664
16 TraesCS3B01G558200 chr3A 60779843 60781893 2050 False 1229.000000 1229 77.693000 950 3025 1 chr3A.!!$F1 2075
17 TraesCS3B01G558200 chr2D 621865587 621868581 2994 False 384.600000 619 88.373800 2 4077 5 chr2D.!!$F1 4075
18 TraesCS3B01G558200 chr4D 138689971 138692958 2987 False 381.200000 614 88.012600 2 4077 5 chr4D.!!$F1 4075

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
410 416 0.387112 TTTAGTGGCGTACGGTCGTG 60.387 55.000 18.39 0.00 0.00 4.35 F
1873 2239 0.539438 TGGGGTTGCACCAAAGCTAG 60.539 55.000 7.49 0.00 41.02 3.42 F
2038 2407 1.064505 CACGATTCATGGCATGTGTCC 59.935 52.381 25.62 12.96 0.00 4.02 F
2816 4375 2.798499 GCTTGGCATTGCATGAAGCTAG 60.798 50.000 22.27 8.79 45.94 3.42 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2038 2407 0.106469 TCTGGAGTCTCTGATCCCCG 60.106 60.000 0.00 0.00 34.47 5.73 R
2772 4331 0.816018 ACCGCGACCATGTTTGTGAA 60.816 50.000 8.23 0.00 0.00 3.18 R
3104 4672 1.949525 TGCTCTGCAAACAAGAAGGAC 59.050 47.619 0.00 0.00 34.76 3.85 R
4090 8860 0.323816 ACTGAGGATGGCTCGACTCA 60.324 55.000 1.76 1.76 37.61 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
131 135 8.517878 TCAGATTCCTTTCATTTTCTTCATGTC 58.482 33.333 0.00 0.00 0.00 3.06
394 400 3.689347 AGCAGCACATGAGATGGTTTTA 58.311 40.909 7.28 0.00 33.60 1.52
410 416 0.387112 TTTAGTGGCGTACGGTCGTG 60.387 55.000 18.39 0.00 0.00 4.35
868 909 2.361483 TAGCCTACCCGCGTGTGA 60.361 61.111 3.91 0.00 0.00 3.58
1075 1121 1.352156 GGTTGGCTTCTCTGTACGCG 61.352 60.000 3.53 3.53 0.00 6.01
1154 1200 3.406764 CAAGACAAGGTTGGAGGAAGAG 58.593 50.000 0.00 0.00 0.00 2.85
1503 1550 7.754924 ACAAAACATGACTTACAAAACTGTCAG 59.245 33.333 0.00 0.00 41.77 3.51
1590 1638 3.793819 AAAAAGGCCAATCCAGCATTT 57.206 38.095 5.01 0.00 45.27 2.32
1791 1839 2.161410 TGTTACATTCGGTGCTGCATTC 59.839 45.455 5.27 0.39 0.00 2.67
1873 2239 0.539438 TGGGGTTGCACCAAAGCTAG 60.539 55.000 7.49 0.00 41.02 3.42
1944 2313 1.126846 CCGAACACAAAGCATCGACTC 59.873 52.381 0.00 0.00 37.48 3.36
2038 2407 1.064505 CACGATTCATGGCATGTGTCC 59.935 52.381 25.62 12.96 0.00 4.02
2477 4031 3.236816 GTCATGTCAAAACCATTGAGCG 58.763 45.455 0.00 0.00 0.00 5.03
2598 4152 5.359292 TCGAATGTTTGAATCATTGGGCATA 59.641 36.000 6.23 0.00 35.94 3.14
2725 4284 3.588210 ATGATGCCAATGGACATGAGA 57.412 42.857 2.05 0.00 0.00 3.27
2816 4375 2.798499 GCTTGGCATTGCATGAAGCTAG 60.798 50.000 22.27 8.79 45.94 3.42
3104 4672 9.717892 CTTCTGTCATGTTTTCATAATCTGATG 57.282 33.333 0.00 0.00 38.64 3.07
3384 7941 6.061441 TCAAGTACACCATGTTGAATCTGTT 58.939 36.000 0.00 0.00 0.00 3.16
3482 8042 9.317936 TGAGACTAATGTGTATTGTCATGAATC 57.682 33.333 0.00 0.00 32.02 2.52
4079 8849 4.506886 GAGTACAGGATATGTTCTCCCG 57.493 50.000 0.00 0.00 45.66 5.14
4080 8850 3.890147 GAGTACAGGATATGTTCTCCCGT 59.110 47.826 0.00 0.00 45.66 5.28
4081 8851 3.637229 AGTACAGGATATGTTCTCCCGTG 59.363 47.826 0.00 0.00 39.96 4.94
4082 8852 2.747177 ACAGGATATGTTCTCCCGTGA 58.253 47.619 0.00 0.00 39.96 4.35
4083 8853 3.309296 ACAGGATATGTTCTCCCGTGAT 58.691 45.455 0.00 0.00 39.96 3.06
4084 8854 3.070159 ACAGGATATGTTCTCCCGTGATG 59.930 47.826 0.00 0.00 39.96 3.07
4085 8855 2.634940 AGGATATGTTCTCCCGTGATGG 59.365 50.000 0.00 0.00 32.89 3.51
4086 8856 2.632996 GGATATGTTCTCCCGTGATGGA 59.367 50.000 0.00 0.00 42.00 3.41
4087 8857 3.261897 GGATATGTTCTCCCGTGATGGAT 59.738 47.826 0.00 0.00 42.00 3.41
4088 8858 2.918712 ATGTTCTCCCGTGATGGATC 57.081 50.000 0.00 0.00 42.00 3.36
4089 8859 1.567357 TGTTCTCCCGTGATGGATCA 58.433 50.000 0.00 0.00 42.00 2.92
4090 8860 2.118679 TGTTCTCCCGTGATGGATCAT 58.881 47.619 0.00 0.00 42.00 2.45
4091 8861 2.158914 TGTTCTCCCGTGATGGATCATG 60.159 50.000 0.00 2.31 42.00 3.07
4092 8862 2.086610 TCTCCCGTGATGGATCATGA 57.913 50.000 9.95 0.00 44.59 3.07
4093 8863 1.966354 TCTCCCGTGATGGATCATGAG 59.034 52.381 9.95 8.33 44.59 2.90
4094 8864 1.690893 CTCCCGTGATGGATCATGAGT 59.309 52.381 9.95 0.00 44.59 3.41
4095 8865 1.688735 TCCCGTGATGGATCATGAGTC 59.311 52.381 9.95 0.00 44.59 3.36
4096 8866 1.603931 CCCGTGATGGATCATGAGTCG 60.604 57.143 9.95 0.97 44.59 4.18
4097 8867 1.338020 CCGTGATGGATCATGAGTCGA 59.662 52.381 9.95 0.00 44.59 4.20
4098 8868 2.606551 CCGTGATGGATCATGAGTCGAG 60.607 54.545 9.95 0.00 44.59 4.04
4099 8869 2.402305 GTGATGGATCATGAGTCGAGC 58.598 52.381 0.09 0.53 39.30 5.03
4100 8870 1.342496 TGATGGATCATGAGTCGAGCC 59.658 52.381 0.09 0.00 39.46 4.70
4101 8871 2.900547 TGGATCATGAGTCGAGCCA 58.099 52.632 0.09 1.34 46.32 4.75
4102 8872 1.417288 TGGATCATGAGTCGAGCCAT 58.583 50.000 0.09 0.00 43.77 4.40
4103 8873 1.342496 TGGATCATGAGTCGAGCCATC 59.658 52.381 0.09 0.00 43.77 3.51
4104 8874 1.337635 GGATCATGAGTCGAGCCATCC 60.338 57.143 0.09 0.00 38.84 3.51
4105 8875 1.617850 GATCATGAGTCGAGCCATCCT 59.382 52.381 0.09 0.00 0.00 3.24
4106 8876 1.035923 TCATGAGTCGAGCCATCCTC 58.964 55.000 0.00 0.00 37.22 3.71
4107 8877 0.749049 CATGAGTCGAGCCATCCTCA 59.251 55.000 3.93 3.93 40.78 3.86
4108 8878 1.039068 ATGAGTCGAGCCATCCTCAG 58.961 55.000 7.18 0.00 40.78 3.35
4109 8879 0.323816 TGAGTCGAGCCATCCTCAGT 60.324 55.000 0.00 0.00 40.78 3.41
4110 8880 0.820871 GAGTCGAGCCATCCTCAGTT 59.179 55.000 0.00 0.00 40.78 3.16
4111 8881 1.205893 GAGTCGAGCCATCCTCAGTTT 59.794 52.381 0.00 0.00 40.78 2.66
4112 8882 1.625818 AGTCGAGCCATCCTCAGTTTT 59.374 47.619 0.00 0.00 40.78 2.43
4113 8883 2.039084 AGTCGAGCCATCCTCAGTTTTT 59.961 45.455 0.00 0.00 40.78 1.94
4114 8884 3.260884 AGTCGAGCCATCCTCAGTTTTTA 59.739 43.478 0.00 0.00 40.78 1.52
4115 8885 4.080863 AGTCGAGCCATCCTCAGTTTTTAT 60.081 41.667 0.00 0.00 40.78 1.40
4116 8886 4.636206 GTCGAGCCATCCTCAGTTTTTATT 59.364 41.667 0.00 0.00 40.78 1.40
4117 8887 5.123979 GTCGAGCCATCCTCAGTTTTTATTT 59.876 40.000 0.00 0.00 40.78 1.40
4118 8888 5.710099 TCGAGCCATCCTCAGTTTTTATTTT 59.290 36.000 0.00 0.00 40.78 1.82
4119 8889 6.208599 TCGAGCCATCCTCAGTTTTTATTTTT 59.791 34.615 0.00 0.00 40.78 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
131 135 4.982241 ACCACACATAGGATTAGGATGG 57.018 45.455 0.00 0.00 0.00 3.51
394 400 4.047059 CCACGACCGTACGCCACT 62.047 66.667 10.49 0.00 36.70 4.00
627 667 5.664908 ACTAGTCATTGACTCCATCATTCCT 59.335 40.000 22.16 0.00 42.40 3.36
813 854 5.063944 GTGTGCTGTAACGATCTTCATCATT 59.936 40.000 0.00 0.00 0.00 2.57
948 994 0.608640 CTGGCTCGTAAGTTGACCCT 59.391 55.000 0.00 0.00 39.48 4.34
1075 1121 4.385825 TCTCCTTTGTGTTGTGTCCATAC 58.614 43.478 0.00 0.00 0.00 2.39
1154 1200 6.410540 ACTTGACCTAGATCCACTGATTTTC 58.589 40.000 0.00 0.00 0.00 2.29
1240 1286 4.202545 CCTCTTCAATCCCATCATAGCCTT 60.203 45.833 0.00 0.00 0.00 4.35
1503 1550 1.512734 CGCTGCCTTGAAATCACGC 60.513 57.895 0.00 0.00 0.00 5.34
1573 1621 5.440207 AAATAAAATGCTGGATTGGCCTT 57.560 34.783 3.32 0.00 37.63 4.35
1791 1839 4.472691 TGCAATCTTCTCGTTTGACAAG 57.527 40.909 0.00 0.00 0.00 3.16
1873 2239 4.212214 GCTTTGATCCTCATCGGTTATGAC 59.788 45.833 0.00 0.00 39.77 3.06
1944 2313 7.228108 AGTTTCATCAGAATATGCCACATACAG 59.772 37.037 0.00 0.00 32.89 2.74
2038 2407 0.106469 TCTGGAGTCTCTGATCCCCG 60.106 60.000 0.00 0.00 34.47 5.73
2477 4031 0.958876 GGTTCGGACATCACCAACCC 60.959 60.000 0.00 0.00 36.29 4.11
2528 4082 7.438564 TGTATTAGTGTTGAAGCAGACAGTTA 58.561 34.615 0.00 0.00 32.13 2.24
2532 4086 6.204688 CCTTTGTATTAGTGTTGAAGCAGACA 59.795 38.462 0.00 0.00 0.00 3.41
2598 4152 4.581824 ACAACAATGATGTGAGAGCAAAGT 59.418 37.500 0.00 0.00 40.46 2.66
2725 4284 4.889780 AGAGAAGTAGATGACCCTTCCAT 58.110 43.478 0.00 0.00 36.16 3.41
2772 4331 0.816018 ACCGCGACCATGTTTGTGAA 60.816 50.000 8.23 0.00 0.00 3.18
2784 4343 4.090057 GCCAAGCTGAACCGCGAC 62.090 66.667 8.23 0.00 34.40 5.19
2816 4375 4.478206 TCCATCTTCTCCTCACAATGTC 57.522 45.455 0.00 0.00 0.00 3.06
3104 4672 1.949525 TGCTCTGCAAACAAGAAGGAC 59.050 47.619 0.00 0.00 34.76 3.85
3420 7977 2.932663 GCAGCCAGCAGTTACAAGA 58.067 52.632 0.00 0.00 44.79 3.02
3482 8042 4.438797 CAGTTTGAATGCTTTGTGAACGAG 59.561 41.667 0.00 0.00 0.00 4.18
3676 8238 7.435068 TCAGCAAGTTTATTTGAGAAGGTAC 57.565 36.000 0.00 0.00 0.00 3.34
3763 8325 5.752036 ACAGAGAGAATCATGACTTTCCA 57.248 39.130 0.00 0.00 37.82 3.53
3765 8327 6.634805 TGGTACAGAGAGAATCATGACTTTC 58.365 40.000 0.00 0.00 37.82 2.62
3836 8398 2.104792 TGCCTCTGTAGCTTGTTGTCTT 59.895 45.455 0.00 0.00 0.00 3.01
4046 8816 3.220110 TCCTGTACTCCCGATGATGTAC 58.780 50.000 0.00 0.00 36.69 2.90
4079 8849 2.402305 GCTCGACTCATGATCCATCAC 58.598 52.381 0.00 0.00 40.03 3.06
4080 8850 1.342496 GGCTCGACTCATGATCCATCA 59.658 52.381 0.00 0.00 41.70 3.07
4081 8851 1.342496 TGGCTCGACTCATGATCCATC 59.658 52.381 0.00 0.00 27.20 3.51
4082 8852 1.417288 TGGCTCGACTCATGATCCAT 58.583 50.000 0.00 0.00 27.20 3.41
4083 8853 1.342496 GATGGCTCGACTCATGATCCA 59.658 52.381 0.00 0.00 36.20 3.41
4084 8854 1.337635 GGATGGCTCGACTCATGATCC 60.338 57.143 0.00 0.00 0.00 3.36
4085 8855 1.617850 AGGATGGCTCGACTCATGATC 59.382 52.381 0.00 0.00 0.00 2.92
4086 8856 1.617850 GAGGATGGCTCGACTCATGAT 59.382 52.381 0.00 0.00 0.00 2.45
4087 8857 1.035923 GAGGATGGCTCGACTCATGA 58.964 55.000 0.00 0.00 0.00 3.07
4088 8858 0.749049 TGAGGATGGCTCGACTCATG 59.251 55.000 1.00 0.00 35.24 3.07
4089 8859 1.039068 CTGAGGATGGCTCGACTCAT 58.961 55.000 2.08 0.00 39.06 2.90
4090 8860 0.323816 ACTGAGGATGGCTCGACTCA 60.324 55.000 1.76 1.76 37.61 3.41
4091 8861 0.820871 AACTGAGGATGGCTCGACTC 59.179 55.000 0.00 0.00 0.00 3.36
4092 8862 1.270907 AAACTGAGGATGGCTCGACT 58.729 50.000 0.00 0.00 0.00 4.18
4093 8863 2.100605 AAAACTGAGGATGGCTCGAC 57.899 50.000 0.00 0.00 0.00 4.20
4094 8864 2.859165 AAAAACTGAGGATGGCTCGA 57.141 45.000 0.00 0.00 0.00 4.04
4095 8865 5.567138 AAATAAAAACTGAGGATGGCTCG 57.433 39.130 0.00 0.00 0.00 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.