Multiple sequence alignment - TraesCS3B01G557200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G557200 chr3B 100.000 6838 0 0 1 6838 791279949 791286786 0.000000e+00 12628.0
1 TraesCS3B01G557200 chr3B 91.863 2077 109 18 3659 5712 792117343 792119382 0.000000e+00 2844.0
2 TraesCS3B01G557200 chr3B 90.920 1619 88 17 3659 5255 792156695 792158276 0.000000e+00 2121.0
3 TraesCS3B01G557200 chr3B 92.460 1366 67 10 4353 5712 792243581 792244916 0.000000e+00 1919.0
4 TraesCS3B01G557200 chr3B 92.504 1254 61 7 4463 5712 792081518 792082742 0.000000e+00 1764.0
5 TraesCS3B01G557200 chr3B 91.531 1169 71 8 1853 3018 792070283 792071426 0.000000e+00 1585.0
6 TraesCS3B01G557200 chr3B 94.515 1021 30 16 5714 6733 792104780 792105775 0.000000e+00 1552.0
7 TraesCS3B01G557200 chr3B 93.738 1022 23 16 5714 6733 792142048 792143030 0.000000e+00 1495.0
8 TraesCS3B01G557200 chr3B 93.640 1022 23 17 5714 6733 792180112 792181093 0.000000e+00 1489.0
9 TraesCS3B01G557200 chr3B 91.075 986 60 8 2035 3018 792115626 792116585 0.000000e+00 1308.0
10 TraesCS3B01G557200 chr3B 90.872 986 63 8 2035 3018 792154974 792155934 0.000000e+00 1297.0
11 TraesCS3B01G557200 chr3B 83.230 1449 183 42 1438 2855 790749669 790748250 0.000000e+00 1275.0
12 TraesCS3B01G557200 chr3B 90.365 986 66 10 2035 3018 792198573 792199531 0.000000e+00 1267.0
13 TraesCS3B01G557200 chr3B 91.394 825 44 11 3659 4465 792072178 792072993 0.000000e+00 1105.0
14 TraesCS3B01G557200 chr3B 92.214 655 38 6 3009 3660 792071468 792072112 0.000000e+00 915.0
15 TraesCS3B01G557200 chr3B 92.061 655 39 6 3009 3660 792116633 792117277 0.000000e+00 909.0
16 TraesCS3B01G557200 chr3B 91.908 655 40 6 3009 3660 792155985 792156629 0.000000e+00 904.0
17 TraesCS3B01G557200 chr3B 91.756 655 40 7 3009 3660 792199579 792200222 0.000000e+00 898.0
18 TraesCS3B01G557200 chr3B 91.114 664 20 10 6071 6733 792253730 792254355 0.000000e+00 863.0
19 TraesCS3B01G557200 chr3B 95.761 401 16 1 5318 5718 792158273 792158672 0.000000e+00 645.0
20 TraesCS3B01G557200 chr3B 83.819 686 99 7 1929 2607 791661412 791662092 5.780000e-180 641.0
21 TraesCS3B01G557200 chr3B 93.793 290 12 3 6404 6689 790743450 790743163 1.360000e-116 431.0
22 TraesCS3B01G557200 chr3B 92.278 259 10 6 6292 6542 791664987 791665243 6.520000e-95 359.0
23 TraesCS3B01G557200 chr3B 85.000 320 39 6 4341 4652 790747800 790747482 3.980000e-82 316.0
24 TraesCS3B01G557200 chr3B 86.667 225 23 4 2598 2820 791662340 791662559 6.850000e-60 243.0
25 TraesCS3B01G557200 chr3B 84.091 264 25 10 1 252 96830328 96830070 8.860000e-59 239.0
26 TraesCS3B01G557200 chr3B 84.436 257 25 8 10 252 96830732 96830987 8.860000e-59 239.0
27 TraesCS3B01G557200 chr3B 83.969 262 26 9 10 257 685398964 685399223 3.190000e-58 237.0
28 TraesCS3B01G557200 chr3B 81.992 261 39 5 924 1178 790750055 790749797 1.490000e-51 215.0
29 TraesCS3B01G557200 chr3B 94.891 137 6 1 6598 6733 791665264 791665400 5.370000e-51 213.0
30 TraesCS3B01G557200 chr3B 100.000 104 0 0 6735 6838 791665438 791665541 7.000000e-45 193.0
31 TraesCS3B01G557200 chr3B 95.714 70 2 1 6735 6804 790742996 790742928 2.020000e-20 111.0
32 TraesCS3B01G557200 chr3B 98.246 57 0 1 6749 6804 792143073 792143129 1.570000e-16 99.0
33 TraesCS3B01G557200 chr3B 98.246 57 0 1 6749 6804 792181136 792181192 1.570000e-16 99.0
34 TraesCS3B01G557200 chr3B 98.246 57 0 1 6749 6804 792254398 792254454 1.570000e-16 99.0
35 TraesCS3B01G557200 chr3B 79.570 93 10 6 6749 6838 792105818 792105904 2.660000e-04 58.4
36 TraesCS3B01G557200 chr3D 95.345 2492 79 11 4254 6733 591040522 591042988 0.000000e+00 3925.0
37 TraesCS3B01G557200 chr3D 92.127 1486 96 13 1077 2546 591039047 591040527 0.000000e+00 2076.0
38 TraesCS3B01G557200 chr3D 85.119 840 70 33 6017 6838 590754495 590753693 0.000000e+00 808.0
39 TraesCS3B01G557200 chr3D 88.914 442 21 10 661 1088 591037598 591038025 2.830000e-143 520.0
40 TraesCS3B01G557200 chr3D 83.699 319 45 4 4341 4652 590756181 590755863 1.870000e-75 294.0
41 TraesCS3B01G557200 chr3D 81.226 261 41 5 924 1178 590763939 590763681 3.230000e-48 204.0
42 TraesCS3B01G557200 chr3D 81.735 219 27 9 1438 1645 590763553 590763337 3.280000e-38 171.0
43 TraesCS3B01G557200 chr3D 83.893 149 21 3 222 369 515560063 515559917 9.250000e-29 139.0
44 TraesCS3B01G557200 chr3D 87.288 118 1 5 6735 6838 591043026 591043143 9.310000e-24 122.0
45 TraesCS3B01G557200 chr3D 100.000 31 0 0 582 612 591037558 591037588 2.660000e-04 58.4
46 TraesCS3B01G557200 chr3A 83.403 1434 185 36 1438 2843 721449846 721451254 0.000000e+00 1280.0
47 TraesCS3B01G557200 chr3A 85.571 700 51 26 6114 6804 721255292 721254634 0.000000e+00 688.0
48 TraesCS3B01G557200 chr3A 83.895 683 100 6 1929 2607 721258715 721258039 1.610000e-180 643.0
49 TraesCS3B01G557200 chr3A 96.916 227 4 3 6615 6838 721453913 721454139 1.800000e-100 377.0
50 TraesCS3B01G557200 chr3A 80.070 572 53 28 6017 6577 721453385 721453906 1.080000e-97 368.0
51 TraesCS3B01G557200 chr3A 80.000 460 68 14 1438 1885 721259161 721258714 1.110000e-82 318.0
52 TraesCS3B01G557200 chr3A 83.072 319 47 4 4341 4652 721451712 721452030 4.040000e-72 283.0
53 TraesCS3B01G557200 chr3A 86.404 228 24 4 2598 2823 721257790 721257568 6.850000e-60 243.0
54 TraesCS3B01G557200 chr3A 81.609 261 40 7 924 1178 721259547 721259289 6.950000e-50 209.0
55 TraesCS3B01G557200 chr3A 80.534 262 41 7 924 1178 721449460 721449718 7.000000e-45 193.0
56 TraesCS3B01G557200 chr3A 100.000 33 0 0 6806 6838 721254617 721254585 2.060000e-05 62.1
57 TraesCS3B01G557200 chr5A 88.017 701 65 8 3659 4341 598578320 598577621 0.000000e+00 811.0
58 TraesCS3B01G557200 chr7B 87.966 698 68 7 3659 4341 440797578 440798274 0.000000e+00 809.0
59 TraesCS3B01G557200 chr5B 87.892 702 66 8 3659 4342 287776736 287776036 0.000000e+00 808.0
60 TraesCS3B01G557200 chr5B 87.874 701 66 8 3659 4341 138782546 138783245 0.000000e+00 806.0
61 TraesCS3B01G557200 chr5B 87.330 442 47 6 3225 3657 369127693 369128134 1.320000e-136 497.0
62 TraesCS3B01G557200 chr5B 83.908 261 26 10 4 252 398440630 398440374 1.150000e-57 235.0
63 TraesCS3B01G557200 chr4A 87.874 701 66 8 3659 4341 624980943 624981642 0.000000e+00 806.0
64 TraesCS3B01G557200 chr1B 87.874 701 66 9 3659 4341 47679587 47680286 0.000000e+00 806.0
65 TraesCS3B01G557200 chr1B 77.748 373 56 21 9 368 597158516 597158158 3.230000e-48 204.0
66 TraesCS3B01G557200 chr5D 88.182 440 45 5 3225 3657 319130879 319131318 1.020000e-142 518.0
67 TraesCS3B01G557200 chr4D 87.955 440 43 6 3225 3657 215461265 215461701 1.700000e-140 510.0
68 TraesCS3B01G557200 chr4D 89.423 208 21 1 3009 3215 313574216 313574423 1.890000e-65 261.0
69 TraesCS3B01G557200 chr7D 87.500 440 48 3 3225 3657 437411532 437411971 1.020000e-137 501.0
70 TraesCS3B01G557200 chr7D 82.609 276 34 9 10 273 59394621 59394348 1.480000e-56 231.0
71 TraesCS3B01G557200 chr7D 88.462 52 6 0 6682 6733 277558364 277558415 5.730000e-06 63.9
72 TraesCS3B01G557200 chr2D 87.273 440 49 3 3225 3657 526354659 526355098 4.760000e-136 496.0
73 TraesCS3B01G557200 chr2D 86.667 60 8 0 5968 6027 24951721 24951662 4.430000e-07 67.6
74 TraesCS3B01G557200 chr1D 90.686 204 18 1 3013 3215 225419563 225419360 3.140000e-68 270.0
75 TraesCS3B01G557200 chr1D 88.995 209 22 1 3008 3215 483954564 483954772 2.450000e-64 257.0
76 TraesCS3B01G557200 chr1D 82.857 105 7 4 5926 6019 100459089 100458985 4.390000e-12 84.2
77 TraesCS3B01G557200 chr6A 89.423 208 21 1 3009 3215 381088720 381088927 1.890000e-65 261.0
78 TraesCS3B01G557200 chr6B 89.320 206 21 1 3009 3213 227274677 227274472 2.450000e-64 257.0
79 TraesCS3B01G557200 chr2B 84.825 257 23 9 10 252 672814833 672815087 1.910000e-60 244.0
80 TraesCS3B01G557200 chr2B 90.000 60 6 0 5968 6027 40351393 40351334 2.040000e-10 78.7
81 TraesCS3B01G557200 chr2A 84.436 257 24 9 10 252 729154248 729153994 8.860000e-59 239.0
82 TraesCS3B01G557200 chr2A 83.333 264 29 9 1 252 735969907 735970167 5.330000e-56 230.0
83 TraesCS3B01G557200 chr2A 86.667 60 8 0 5968 6027 27421271 27421212 4.430000e-07 67.6
84 TraesCS3B01G557200 chr1A 82.407 108 8 4 5923 6019 104946057 104946164 4.390000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G557200 chr3B 791279949 791286786 6837 False 12628.000000 12628 100.000000 1 6838 1 chr3B.!!$F3 6837
1 TraesCS3B01G557200 chr3B 792243581 792244916 1335 False 1919.000000 1919 92.460000 4353 5712 1 chr3B.!!$F5 1359
2 TraesCS3B01G557200 chr3B 792081518 792082742 1224 False 1764.000000 1764 92.504000 4463 5712 1 chr3B.!!$F4 1249
3 TraesCS3B01G557200 chr3B 792115626 792119382 3756 False 1687.000000 2844 91.666333 2035 5712 3 chr3B.!!$F9 3677
4 TraesCS3B01G557200 chr3B 792154974 792158672 3698 False 1241.750000 2121 92.365250 2035 5718 4 chr3B.!!$F11 3683
5 TraesCS3B01G557200 chr3B 792070283 792072993 2710 False 1201.666667 1585 91.713000 1853 4465 3 chr3B.!!$F7 2612
6 TraesCS3B01G557200 chr3B 792198573 792200222 1649 False 1082.500000 1267 91.060500 2035 3660 2 chr3B.!!$F13 1625
7 TraesCS3B01G557200 chr3B 792104780 792105904 1124 False 805.200000 1552 87.042500 5714 6838 2 chr3B.!!$F8 1124
8 TraesCS3B01G557200 chr3B 792142048 792143129 1081 False 797.000000 1495 95.992000 5714 6804 2 chr3B.!!$F10 1090
9 TraesCS3B01G557200 chr3B 792180112 792181192 1080 False 794.000000 1489 95.943000 5714 6804 2 chr3B.!!$F12 1090
10 TraesCS3B01G557200 chr3B 790747482 790750055 2573 True 602.000000 1275 83.407333 924 4652 3 chr3B.!!$R3 3728
11 TraesCS3B01G557200 chr3B 792253730 792254454 724 False 481.000000 863 94.680000 6071 6804 2 chr3B.!!$F14 733
12 TraesCS3B01G557200 chr3B 791661412 791665541 4129 False 329.800000 641 91.531000 1929 6838 5 chr3B.!!$F6 4909
13 TraesCS3B01G557200 chr3B 790742928 790743450 522 True 271.000000 431 94.753500 6404 6804 2 chr3B.!!$R2 400
14 TraesCS3B01G557200 chr3D 591037558 591043143 5585 False 1340.280000 3925 92.734800 582 6838 5 chr3D.!!$F1 6256
15 TraesCS3B01G557200 chr3D 590753693 590756181 2488 True 551.000000 808 84.409000 4341 6838 2 chr3D.!!$R2 2497
16 TraesCS3B01G557200 chr3A 721449460 721454139 4679 False 500.200000 1280 84.799000 924 6838 5 chr3A.!!$F1 5914
17 TraesCS3B01G557200 chr3A 721254585 721259547 4962 True 360.516667 688 86.246500 924 6838 6 chr3A.!!$R1 5914
18 TraesCS3B01G557200 chr5A 598577621 598578320 699 True 811.000000 811 88.017000 3659 4341 1 chr5A.!!$R1 682
19 TraesCS3B01G557200 chr7B 440797578 440798274 696 False 809.000000 809 87.966000 3659 4341 1 chr7B.!!$F1 682
20 TraesCS3B01G557200 chr5B 287776036 287776736 700 True 808.000000 808 87.892000 3659 4342 1 chr5B.!!$R1 683
21 TraesCS3B01G557200 chr5B 138782546 138783245 699 False 806.000000 806 87.874000 3659 4341 1 chr5B.!!$F1 682
22 TraesCS3B01G557200 chr4A 624980943 624981642 699 False 806.000000 806 87.874000 3659 4341 1 chr4A.!!$F1 682
23 TraesCS3B01G557200 chr1B 47679587 47680286 699 False 806.000000 806 87.874000 3659 4341 1 chr1B.!!$F1 682

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
424 425 0.026156 CATATGCTCGCGCGTTTCAA 59.974 50.000 30.98 14.27 39.65 2.69 F
425 426 0.026285 ATATGCTCGCGCGTTTCAAC 59.974 50.000 30.98 13.83 39.65 3.18 F
456 457 0.037326 GCTCATGTTCGTGGACCTGA 60.037 55.000 0.00 0.00 0.00 3.86 F
637 638 0.102481 TCTCCCGAGCGCAACTTATC 59.898 55.000 11.47 0.00 0.00 1.75 F
1022 1036 0.543749 GATGTGGGGTGGAGGAAGAG 59.456 60.000 0.00 0.00 0.00 2.85 F
2090 3163 0.740868 TGCATCAACGAGCTACTGGC 60.741 55.000 0.00 0.00 42.19 4.85 F
3632 5304 0.107508 ATGTGGCCATTGAGGTCTCG 60.108 55.000 9.72 0.00 44.59 4.04 F
4207 5972 0.032678 CGCATCGCTGAGAGGGTTAT 59.967 55.000 0.00 0.00 0.00 1.89 F
4568 6521 2.097954 ACATATTGACCATGTTGCTGCG 59.902 45.455 0.00 0.00 32.72 5.18 F
5192 7452 2.426024 TCTTGATGGTGGTAGTAGCGTC 59.574 50.000 0.00 0.00 35.28 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1570 2633 1.069978 CCCGGCAAGACCAACAAAAAT 59.930 47.619 0.00 0.00 39.03 1.82 R
1578 2641 1.223487 GATAAGCCCGGCAAGACCA 59.777 57.895 13.15 0.00 39.03 4.02 R
2052 3125 1.403679 CAAACGACTTTGTTCCTGCCA 59.596 47.619 0.00 0.00 33.31 4.92 R
2335 3415 2.023673 TGGTTTGTCTGCAACCTCTTG 58.976 47.619 6.10 0.00 33.82 3.02 R
2640 4238 3.435275 AGCAGAACTAGACTGGATGACA 58.565 45.455 17.85 0.00 36.09 3.58 R
4052 5808 0.527600 CTTAGTGGCGCGCTACATCA 60.528 55.000 41.90 26.79 0.00 3.07 R
4998 7236 0.818040 ATCCCATAAAGGCCGCGAAC 60.818 55.000 8.23 0.00 35.39 3.95 R
5255 7515 1.329256 TAGCTCGGTAATGCTCCTCC 58.671 55.000 0.00 0.00 40.35 4.30 R
5425 7689 1.652563 CATCCCATGCGAGCACATG 59.347 57.895 0.00 7.25 45.74 3.21 R
6492 8795 2.619147 CTGGACTCAGATGCAAGACTG 58.381 52.381 11.09 11.09 43.49 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.715191 TGTTCAGCATTTTTCAAATACTTGTT 57.285 26.923 0.00 0.00 33.94 2.83
26 27 8.816144 TGTTCAGCATTTTTCAAATACTTGTTC 58.184 29.630 0.00 0.00 33.94 3.18
27 28 8.816144 GTTCAGCATTTTTCAAATACTTGTTCA 58.184 29.630 0.00 0.00 33.94 3.18
28 29 8.939201 TCAGCATTTTTCAAATACTTGTTCAA 57.061 26.923 0.00 0.00 33.94 2.69
29 30 8.816144 TCAGCATTTTTCAAATACTTGTTCAAC 58.184 29.630 0.00 0.00 33.94 3.18
30 31 8.602328 CAGCATTTTTCAAATACTTGTTCAACA 58.398 29.630 0.00 0.00 33.94 3.33
31 32 9.328845 AGCATTTTTCAAATACTTGTTCAACAT 57.671 25.926 0.00 0.00 33.94 2.71
32 33 9.934190 GCATTTTTCAAATACTTGTTCAACATT 57.066 25.926 0.00 0.00 33.94 2.71
87 88 8.945057 ACTTGTTCAACATTTTTAATTGCTTGT 58.055 25.926 0.00 0.00 0.00 3.16
88 89 9.771915 CTTGTTCAACATTTTTAATTGCTTGTT 57.228 25.926 0.00 0.00 0.00 2.83
89 90 9.766277 TTGTTCAACATTTTTAATTGCTTGTTC 57.234 25.926 0.00 0.00 0.00 3.18
90 91 8.939929 TGTTCAACATTTTTAATTGCTTGTTCA 58.060 25.926 0.00 0.00 0.00 3.18
91 92 9.766277 GTTCAACATTTTTAATTGCTTGTTCAA 57.234 25.926 0.00 0.00 0.00 2.69
128 129 8.721019 ACATGATCAACAATTTTTCAAACACT 57.279 26.923 0.00 0.00 0.00 3.55
129 130 9.165035 ACATGATCAACAATTTTTCAAACACTT 57.835 25.926 0.00 0.00 0.00 3.16
130 131 9.428363 CATGATCAACAATTTTTCAAACACTTG 57.572 29.630 0.00 0.00 0.00 3.16
131 132 8.545229 TGATCAACAATTTTTCAAACACTTGT 57.455 26.923 0.00 0.00 33.94 3.16
132 133 8.997323 TGATCAACAATTTTTCAAACACTTGTT 58.003 25.926 0.00 0.00 40.50 2.83
275 276 9.921637 TTTTTAATGCGTGATTAAGATTTTCCT 57.078 25.926 0.00 0.00 37.72 3.36
277 278 9.997482 TTTAATGCGTGATTAAGATTTTCCTAC 57.003 29.630 0.00 0.00 37.72 3.18
278 279 7.624360 AATGCGTGATTAAGATTTTCCTACA 57.376 32.000 0.00 0.00 0.00 2.74
279 280 7.807977 ATGCGTGATTAAGATTTTCCTACAT 57.192 32.000 0.00 0.00 0.00 2.29
280 281 8.902540 ATGCGTGATTAAGATTTTCCTACATA 57.097 30.769 0.00 0.00 0.00 2.29
281 282 8.902540 TGCGTGATTAAGATTTTCCTACATAT 57.097 30.769 0.00 0.00 0.00 1.78
282 283 9.337396 TGCGTGATTAAGATTTTCCTACATATT 57.663 29.630 0.00 0.00 0.00 1.28
375 376 9.411801 AGAATTAAAAAGAAGAAAAATCGAGGC 57.588 29.630 0.00 0.00 0.00 4.70
376 377 9.411801 GAATTAAAAAGAAGAAAAATCGAGGCT 57.588 29.630 0.00 0.00 0.00 4.58
377 378 8.748380 ATTAAAAAGAAGAAAAATCGAGGCTG 57.252 30.769 0.00 0.00 0.00 4.85
378 379 5.774498 AAAAGAAGAAAAATCGAGGCTGT 57.226 34.783 0.00 0.00 0.00 4.40
379 380 4.756084 AAGAAGAAAAATCGAGGCTGTG 57.244 40.909 0.00 0.00 0.00 3.66
380 381 3.744660 AGAAGAAAAATCGAGGCTGTGT 58.255 40.909 0.00 0.00 0.00 3.72
381 382 4.894784 AGAAGAAAAATCGAGGCTGTGTA 58.105 39.130 0.00 0.00 0.00 2.90
382 383 4.932200 AGAAGAAAAATCGAGGCTGTGTAG 59.068 41.667 0.00 0.00 0.00 2.74
383 384 4.273148 AGAAAAATCGAGGCTGTGTAGT 57.727 40.909 0.00 0.00 0.00 2.73
384 385 5.401531 AGAAAAATCGAGGCTGTGTAGTA 57.598 39.130 0.00 0.00 0.00 1.82
385 386 5.169295 AGAAAAATCGAGGCTGTGTAGTAC 58.831 41.667 0.00 0.00 0.00 2.73
386 387 3.521947 AAATCGAGGCTGTGTAGTACC 57.478 47.619 0.00 0.00 0.00 3.34
387 388 1.400737 ATCGAGGCTGTGTAGTACCC 58.599 55.000 0.00 0.00 0.00 3.69
388 389 1.028330 TCGAGGCTGTGTAGTACCCG 61.028 60.000 0.00 0.00 0.00 5.28
389 390 1.141234 GAGGCTGTGTAGTACCCGC 59.859 63.158 0.00 0.00 0.00 6.13
390 391 2.202703 GGCTGTGTAGTACCCGCG 60.203 66.667 0.00 0.00 0.00 6.46
391 392 2.202703 GCTGTGTAGTACCCGCGG 60.203 66.667 21.04 21.04 0.00 6.46
392 393 2.703798 GCTGTGTAGTACCCGCGGA 61.704 63.158 30.73 3.89 0.00 5.54
393 394 1.138247 CTGTGTAGTACCCGCGGAC 59.862 63.158 30.73 18.80 0.00 4.79
394 395 2.275547 CTGTGTAGTACCCGCGGACC 62.276 65.000 30.73 13.94 0.00 4.46
395 396 2.048603 GTGTAGTACCCGCGGACCT 61.049 63.158 30.73 20.66 0.00 3.85
396 397 2.048023 TGTAGTACCCGCGGACCTG 61.048 63.158 30.73 12.89 0.00 4.00
397 398 2.440796 TAGTACCCGCGGACCTGG 60.441 66.667 30.73 12.43 0.00 4.45
420 421 2.967076 CCCATATGCTCGCGCGTT 60.967 61.111 30.98 15.35 39.65 4.84
421 422 2.534019 CCCATATGCTCGCGCGTTT 61.534 57.895 30.98 14.99 39.65 3.60
422 423 1.083401 CCATATGCTCGCGCGTTTC 60.083 57.895 30.98 19.30 39.65 2.78
423 424 1.635810 CATATGCTCGCGCGTTTCA 59.364 52.632 30.98 24.05 39.65 2.69
424 425 0.026156 CATATGCTCGCGCGTTTCAA 59.974 50.000 30.98 14.27 39.65 2.69
425 426 0.026285 ATATGCTCGCGCGTTTCAAC 59.974 50.000 30.98 13.83 39.65 3.18
435 436 3.250986 GTTTCAACGAGTCGGCCC 58.749 61.111 18.30 0.00 0.00 5.80
436 437 2.356553 TTTCAACGAGTCGGCCCG 60.357 61.111 18.30 0.00 0.00 6.13
437 438 3.869473 TTTCAACGAGTCGGCCCGG 62.869 63.158 18.30 0.00 0.00 5.73
445 446 4.778143 GTCGGCCCGGCTCATGTT 62.778 66.667 9.86 0.00 0.00 2.71
446 447 4.467084 TCGGCCCGGCTCATGTTC 62.467 66.667 9.86 0.00 0.00 3.18
448 449 4.778143 GGCCCGGCTCATGTTCGT 62.778 66.667 9.86 0.00 0.00 3.85
449 450 3.499737 GCCCGGCTCATGTTCGTG 61.500 66.667 0.71 0.00 0.00 4.35
450 451 2.819595 CCCGGCTCATGTTCGTGG 60.820 66.667 0.00 0.00 0.00 4.94
451 452 2.264480 CCGGCTCATGTTCGTGGA 59.736 61.111 0.00 0.00 0.00 4.02
452 453 2.100631 CCGGCTCATGTTCGTGGAC 61.101 63.158 0.00 0.00 0.00 4.02
453 454 2.100631 CGGCTCATGTTCGTGGACC 61.101 63.158 0.00 0.00 0.00 4.46
454 455 1.296715 GGCTCATGTTCGTGGACCT 59.703 57.895 0.00 0.00 0.00 3.85
455 456 1.021390 GGCTCATGTTCGTGGACCTG 61.021 60.000 0.00 0.00 0.00 4.00
456 457 0.037326 GCTCATGTTCGTGGACCTGA 60.037 55.000 0.00 0.00 0.00 3.86
457 458 1.608025 GCTCATGTTCGTGGACCTGAA 60.608 52.381 0.00 0.00 0.00 3.02
458 459 2.069273 CTCATGTTCGTGGACCTGAAC 58.931 52.381 18.01 18.01 43.67 3.18
459 460 0.790207 CATGTTCGTGGACCTGAACG 59.210 55.000 18.95 10.15 45.75 3.95
460 461 0.677288 ATGTTCGTGGACCTGAACGA 59.323 50.000 18.95 12.00 45.75 3.85
470 471 3.669354 CCTGAACGAGGGACATAGC 57.331 57.895 0.00 0.00 38.36 2.97
471 472 0.105039 CCTGAACGAGGGACATAGCC 59.895 60.000 0.00 0.00 38.36 3.93
472 473 0.824109 CTGAACGAGGGACATAGCCA 59.176 55.000 0.00 0.00 0.00 4.75
473 474 1.414181 CTGAACGAGGGACATAGCCAT 59.586 52.381 0.00 0.00 0.00 4.40
474 475 1.138859 TGAACGAGGGACATAGCCATG 59.861 52.381 0.00 0.00 38.21 3.66
475 476 0.179045 AACGAGGGACATAGCCATGC 60.179 55.000 0.00 0.00 35.39 4.06
476 477 1.302033 CGAGGGACATAGCCATGCC 60.302 63.158 0.00 0.00 35.39 4.40
477 478 1.073897 GAGGGACATAGCCATGCCC 59.926 63.158 13.91 13.91 43.45 5.36
478 479 2.281761 GGGACATAGCCATGCCCG 60.282 66.667 8.38 0.00 35.60 6.13
479 480 2.980233 GGACATAGCCATGCCCGC 60.980 66.667 0.00 0.00 35.39 6.13
480 481 2.203195 GACATAGCCATGCCCGCA 60.203 61.111 0.00 0.00 35.39 5.69
481 482 2.516930 ACATAGCCATGCCCGCAC 60.517 61.111 0.00 0.00 35.39 5.34
482 483 3.653009 CATAGCCATGCCCGCACG 61.653 66.667 0.00 0.00 0.00 5.34
487 488 4.354939 CCATGCCCGCACGCAAAA 62.355 61.111 0.00 0.00 43.24 2.44
488 489 2.125991 CATGCCCGCACGCAAAAT 60.126 55.556 0.00 0.00 43.24 1.82
489 490 2.125991 ATGCCCGCACGCAAAATG 60.126 55.556 0.00 0.00 43.24 2.32
499 500 3.365535 GCAAAATGCGTGTCCCCT 58.634 55.556 0.00 0.00 31.71 4.79
500 501 1.665442 GCAAAATGCGTGTCCCCTT 59.335 52.632 0.00 0.00 31.71 3.95
501 502 0.667184 GCAAAATGCGTGTCCCCTTG 60.667 55.000 0.00 0.00 31.71 3.61
502 503 0.667184 CAAAATGCGTGTCCCCTTGC 60.667 55.000 0.00 0.00 0.00 4.01
503 504 0.827507 AAAATGCGTGTCCCCTTGCT 60.828 50.000 0.00 0.00 0.00 3.91
504 505 1.526575 AAATGCGTGTCCCCTTGCTG 61.527 55.000 0.00 0.00 0.00 4.41
507 508 4.335647 CGTGTCCCCTTGCTGCCT 62.336 66.667 0.00 0.00 0.00 4.75
508 509 2.116125 GTGTCCCCTTGCTGCCTT 59.884 61.111 0.00 0.00 0.00 4.35
509 510 1.531602 GTGTCCCCTTGCTGCCTTT 60.532 57.895 0.00 0.00 0.00 3.11
510 511 1.531365 TGTCCCCTTGCTGCCTTTG 60.531 57.895 0.00 0.00 0.00 2.77
511 512 1.531602 GTCCCCTTGCTGCCTTTGT 60.532 57.895 0.00 0.00 0.00 2.83
512 513 0.251165 GTCCCCTTGCTGCCTTTGTA 60.251 55.000 0.00 0.00 0.00 2.41
513 514 0.251165 TCCCCTTGCTGCCTTTGTAC 60.251 55.000 0.00 0.00 0.00 2.90
514 515 1.250840 CCCCTTGCTGCCTTTGTACC 61.251 60.000 0.00 0.00 0.00 3.34
515 516 0.539438 CCCTTGCTGCCTTTGTACCA 60.539 55.000 0.00 0.00 0.00 3.25
516 517 0.598065 CCTTGCTGCCTTTGTACCAC 59.402 55.000 0.00 0.00 0.00 4.16
517 518 1.609208 CTTGCTGCCTTTGTACCACT 58.391 50.000 0.00 0.00 0.00 4.00
518 519 2.552155 CCTTGCTGCCTTTGTACCACTA 60.552 50.000 0.00 0.00 0.00 2.74
519 520 2.940994 TGCTGCCTTTGTACCACTAA 57.059 45.000 0.00 0.00 0.00 2.24
520 521 3.216187 TGCTGCCTTTGTACCACTAAA 57.784 42.857 0.00 0.00 0.00 1.85
521 522 3.556999 TGCTGCCTTTGTACCACTAAAA 58.443 40.909 0.00 0.00 0.00 1.52
522 523 3.954904 TGCTGCCTTTGTACCACTAAAAA 59.045 39.130 0.00 0.00 0.00 1.94
539 540 3.605013 AAAAATGCCGCCTTTGTCC 57.395 47.368 0.00 0.00 0.00 4.02
540 541 0.319469 AAAAATGCCGCCTTTGTCCG 60.319 50.000 0.00 0.00 0.00 4.79
541 542 1.175983 AAAATGCCGCCTTTGTCCGA 61.176 50.000 0.00 0.00 0.00 4.55
542 543 1.175983 AAATGCCGCCTTTGTCCGAA 61.176 50.000 0.00 0.00 0.00 4.30
543 544 1.175983 AATGCCGCCTTTGTCCGAAA 61.176 50.000 0.00 0.00 0.00 3.46
544 545 1.175983 ATGCCGCCTTTGTCCGAAAA 61.176 50.000 0.00 0.00 0.00 2.29
545 546 1.360911 GCCGCCTTTGTCCGAAAAA 59.639 52.632 0.00 0.00 0.00 1.94
546 547 0.663269 GCCGCCTTTGTCCGAAAAAG 60.663 55.000 4.25 4.25 34.94 2.27
547 548 0.666374 CCGCCTTTGTCCGAAAAAGT 59.334 50.000 9.72 0.00 33.61 2.66
548 549 1.599419 CCGCCTTTGTCCGAAAAAGTG 60.599 52.381 9.72 3.58 33.61 3.16
549 550 1.064952 CGCCTTTGTCCGAAAAAGTGT 59.935 47.619 9.72 0.00 33.61 3.55
550 551 2.288458 CGCCTTTGTCCGAAAAAGTGTA 59.712 45.455 9.72 0.00 33.61 2.90
551 552 3.242804 CGCCTTTGTCCGAAAAAGTGTAA 60.243 43.478 9.72 0.00 33.61 2.41
552 553 4.674475 GCCTTTGTCCGAAAAAGTGTAAA 58.326 39.130 9.72 0.00 33.61 2.01
553 554 5.103687 GCCTTTGTCCGAAAAAGTGTAAAA 58.896 37.500 9.72 0.00 33.61 1.52
554 555 5.751509 GCCTTTGTCCGAAAAAGTGTAAAAT 59.248 36.000 9.72 0.00 33.61 1.82
555 556 6.256975 GCCTTTGTCCGAAAAAGTGTAAAATT 59.743 34.615 9.72 0.00 33.61 1.82
556 557 7.617557 CCTTTGTCCGAAAAAGTGTAAAATTG 58.382 34.615 9.72 0.00 33.61 2.32
557 558 7.489757 CCTTTGTCCGAAAAAGTGTAAAATTGA 59.510 33.333 9.72 0.00 33.61 2.57
558 559 7.979115 TTGTCCGAAAAAGTGTAAAATTGAG 57.021 32.000 0.00 0.00 0.00 3.02
559 560 5.974751 TGTCCGAAAAAGTGTAAAATTGAGC 59.025 36.000 0.00 0.00 0.00 4.26
560 561 5.115021 GTCCGAAAAAGTGTAAAATTGAGCG 59.885 40.000 0.00 0.00 0.00 5.03
561 562 4.143618 CCGAAAAAGTGTAAAATTGAGCGC 60.144 41.667 0.00 0.00 0.00 5.92
562 563 4.429812 CGAAAAAGTGTAAAATTGAGCGCG 60.430 41.667 0.00 0.00 0.00 6.86
563 564 2.611974 AAGTGTAAAATTGAGCGCGG 57.388 45.000 8.83 0.00 0.00 6.46
564 565 1.803334 AGTGTAAAATTGAGCGCGGA 58.197 45.000 8.83 0.00 0.00 5.54
565 566 1.463444 AGTGTAAAATTGAGCGCGGAC 59.537 47.619 8.83 0.00 0.00 4.79
566 567 1.463444 GTGTAAAATTGAGCGCGGACT 59.537 47.619 8.83 0.00 0.00 3.85
567 568 1.730064 TGTAAAATTGAGCGCGGACTC 59.270 47.619 8.83 7.60 37.19 3.36
568 569 1.730064 GTAAAATTGAGCGCGGACTCA 59.270 47.619 8.83 10.58 44.84 3.41
569 570 0.798776 AAAATTGAGCGCGGACTCAG 59.201 50.000 8.83 0.00 46.85 3.35
570 571 1.021390 AAATTGAGCGCGGACTCAGG 61.021 55.000 8.83 0.00 46.85 3.86
571 572 1.888436 AATTGAGCGCGGACTCAGGA 61.888 55.000 8.83 0.00 46.85 3.86
572 573 1.680522 ATTGAGCGCGGACTCAGGAT 61.681 55.000 8.83 1.67 46.85 3.24
573 574 1.888436 TTGAGCGCGGACTCAGGATT 61.888 55.000 8.83 0.00 46.85 3.01
574 575 1.880340 GAGCGCGGACTCAGGATTG 60.880 63.158 8.83 0.00 36.65 2.67
575 576 3.567797 GCGCGGACTCAGGATTGC 61.568 66.667 8.83 0.00 0.00 3.56
576 577 2.892425 CGCGGACTCAGGATTGCC 60.892 66.667 0.00 0.00 0.00 4.52
577 578 2.514824 GCGGACTCAGGATTGCCC 60.515 66.667 0.00 0.00 33.31 5.36
578 579 2.202932 CGGACTCAGGATTGCCCG 60.203 66.667 0.00 0.00 40.87 6.13
579 580 2.514824 GGACTCAGGATTGCCCGC 60.515 66.667 0.00 0.00 40.87 6.13
580 581 2.268920 GACTCAGGATTGCCCGCA 59.731 61.111 0.00 0.00 40.87 5.69
621 622 3.630892 GGTTACCCCCTTTCTCTTCTC 57.369 52.381 0.00 0.00 0.00 2.87
622 623 2.239150 GGTTACCCCCTTTCTCTTCTCC 59.761 54.545 0.00 0.00 0.00 3.71
623 624 2.239150 GTTACCCCCTTTCTCTTCTCCC 59.761 54.545 0.00 0.00 0.00 4.30
624 625 0.910088 ACCCCCTTTCTCTTCTCCCG 60.910 60.000 0.00 0.00 0.00 5.14
625 626 0.617820 CCCCCTTTCTCTTCTCCCGA 60.618 60.000 0.00 0.00 0.00 5.14
626 627 0.827368 CCCCTTTCTCTTCTCCCGAG 59.173 60.000 0.00 0.00 0.00 4.63
627 628 0.176910 CCCTTTCTCTTCTCCCGAGC 59.823 60.000 0.00 0.00 0.00 5.03
628 629 0.179124 CCTTTCTCTTCTCCCGAGCG 60.179 60.000 0.00 0.00 0.00 5.03
629 630 0.804156 CTTTCTCTTCTCCCGAGCGC 60.804 60.000 0.00 0.00 0.00 5.92
630 631 1.532604 TTTCTCTTCTCCCGAGCGCA 61.533 55.000 11.47 0.00 0.00 6.09
631 632 1.532604 TTCTCTTCTCCCGAGCGCAA 61.533 55.000 11.47 0.00 0.00 4.85
632 633 1.807573 CTCTTCTCCCGAGCGCAAC 60.808 63.158 11.47 1.68 0.00 4.17
633 634 2.219325 CTCTTCTCCCGAGCGCAACT 62.219 60.000 11.47 0.00 0.00 3.16
634 635 1.374758 CTTCTCCCGAGCGCAACTT 60.375 57.895 11.47 0.00 0.00 2.66
635 636 0.108804 CTTCTCCCGAGCGCAACTTA 60.109 55.000 11.47 0.00 0.00 2.24
636 637 0.535335 TTCTCCCGAGCGCAACTTAT 59.465 50.000 11.47 0.00 0.00 1.73
637 638 0.102481 TCTCCCGAGCGCAACTTATC 59.898 55.000 11.47 0.00 0.00 1.75
638 639 0.876342 CTCCCGAGCGCAACTTATCC 60.876 60.000 11.47 0.00 0.00 2.59
639 640 1.887707 CCCGAGCGCAACTTATCCC 60.888 63.158 11.47 0.00 0.00 3.85
640 641 1.887707 CCGAGCGCAACTTATCCCC 60.888 63.158 11.47 0.00 0.00 4.81
641 642 1.144057 CGAGCGCAACTTATCCCCT 59.856 57.895 11.47 0.00 0.00 4.79
686 687 4.150454 CTCCTCCGCCCCTCTCCT 62.150 72.222 0.00 0.00 0.00 3.69
729 730 1.316266 CTCACCCTCCTCCCCATCT 59.684 63.158 0.00 0.00 0.00 2.90
736 737 1.415716 CCTCCTCCCCATCTTCTCCAT 60.416 57.143 0.00 0.00 0.00 3.41
738 739 0.683973 CCTCCCCATCTTCTCCATCG 59.316 60.000 0.00 0.00 0.00 3.84
822 823 3.512516 GATCAGCTTGCCGCCCAC 61.513 66.667 0.00 0.00 40.39 4.61
907 910 1.218316 CAGCTGAACGGGGAGGTAC 59.782 63.158 8.42 0.00 0.00 3.34
940 944 6.245115 TCGTTGTCGTCTGATCTTAACTAA 57.755 37.500 0.00 0.00 38.33 2.24
972 976 7.810658 TCTCTGATCTTAAATTGCAACAAGTC 58.189 34.615 0.00 7.00 0.00 3.01
988 992 5.312120 ACAAGTCTGTGAGGATAACTACG 57.688 43.478 0.00 0.00 33.30 3.51
994 1008 5.764192 GTCTGTGAGGATAACTACGAGGTAT 59.236 44.000 0.00 0.00 29.03 2.73
1022 1036 0.543749 GATGTGGGGTGGAGGAAGAG 59.456 60.000 0.00 0.00 0.00 2.85
1098 2149 4.227538 GCATATTCATTGTGCTCATGCTC 58.772 43.478 0.00 0.00 40.48 4.26
1105 2156 1.926561 TGTGCTCATGCTCGTCATAC 58.073 50.000 0.00 0.00 40.48 2.39
1197 2248 2.946329 TCCACTTTGCGCTTTTGTCTTA 59.054 40.909 9.73 0.00 0.00 2.10
1201 2252 6.596106 TCCACTTTGCGCTTTTGTCTTATATA 59.404 34.615 9.73 0.00 0.00 0.86
1205 2256 7.850982 ACTTTGCGCTTTTGTCTTATATAATCG 59.149 33.333 9.73 0.00 0.00 3.34
1213 2264 7.867305 TTTGTCTTATATAATCGGTTTGCCA 57.133 32.000 0.00 0.00 34.09 4.92
1235 2286 2.212652 CTGTTCTGTTGCTGCACACTA 58.787 47.619 0.00 0.00 0.00 2.74
1318 2369 7.362056 CCAATAAACTCAATACAAGTGACAGGG 60.362 40.741 0.00 0.00 0.00 4.45
1330 2381 1.123077 TGACAGGGGAGATTCGGATG 58.877 55.000 0.00 0.00 0.00 3.51
1331 2382 1.342975 TGACAGGGGAGATTCGGATGA 60.343 52.381 0.00 0.00 0.00 2.92
1365 2416 6.705863 AGATTTGGCTAAATTAAGCTCCAG 57.294 37.500 9.60 0.00 42.37 3.86
1383 2434 6.377146 AGCTCCAGTCAAAAGAAAGTAAAACA 59.623 34.615 0.00 0.00 0.00 2.83
1487 2542 8.276453 AGTAAAGTCTGGGGCATAGTTATATT 57.724 34.615 0.00 0.00 0.00 1.28
1563 2626 6.932356 ACGCTGAATGTGATCTCAATAATT 57.068 33.333 0.90 0.00 0.00 1.40
1570 2633 8.054572 TGAATGTGATCTCAATAATTCCCTTCA 58.945 33.333 0.90 1.74 0.00 3.02
1593 2656 2.597510 GTTGGTCTTGCCGGGCTT 60.598 61.111 21.46 0.00 41.21 4.35
1614 2677 2.178912 TCCTTAACCACTGCGAAAGG 57.821 50.000 0.00 0.00 38.44 3.11
1621 2684 1.140252 ACCACTGCGAAAGGTACTGTT 59.860 47.619 0.00 0.00 40.86 3.16
1622 2685 2.366266 ACCACTGCGAAAGGTACTGTTA 59.634 45.455 0.00 0.00 40.86 2.41
1647 2710 4.357142 CATGGTGCAGATTTGATGCTTAC 58.643 43.478 0.00 0.00 44.17 2.34
1661 2724 6.019779 TGATGCTTACGCTAATTTTGGTTT 57.980 33.333 0.00 0.00 36.97 3.27
1662 2725 6.451393 TGATGCTTACGCTAATTTTGGTTTT 58.549 32.000 0.00 0.00 36.97 2.43
1714 2777 7.838498 ACACTCGAATGTTAATACTTAATCGC 58.162 34.615 0.00 0.00 0.00 4.58
1814 2877 3.758554 CCATCTCAACCCGAAAAATGACT 59.241 43.478 0.00 0.00 0.00 3.41
1816 2879 4.079980 TCTCAACCCGAAAAATGACTCA 57.920 40.909 0.00 0.00 0.00 3.41
1985 3058 3.005684 TGAAGGATGACATGTTGGTTTGC 59.994 43.478 0.00 0.00 0.00 3.68
2000 3073 4.264253 TGGTTTGCTTGTCTAGATGATGG 58.736 43.478 0.00 0.00 0.00 3.51
2090 3163 0.740868 TGCATCAACGAGCTACTGGC 60.741 55.000 0.00 0.00 42.19 4.85
2120 3193 5.296780 GCAGCAGGTTAGTATTATTCTTGCA 59.703 40.000 0.00 0.00 0.00 4.08
2173 3246 6.658816 TGTGTAGGTTGCTATTTGTGATTCAT 59.341 34.615 0.00 0.00 0.00 2.57
2180 3253 8.623903 GGTTGCTATTTGTGATTCATCTCAATA 58.376 33.333 5.38 0.00 39.24 1.90
2221 3299 6.644347 AGTTCGTTTCTCATAGGACATGAAT 58.356 36.000 0.00 0.00 0.00 2.57
2223 3301 8.258007 AGTTCGTTTCTCATAGGACATGAATTA 58.742 33.333 0.00 0.00 0.00 1.40
2251 3329 7.704472 TGGTTGTTCTTACTAAAAGTGCAATTG 59.296 33.333 0.00 0.00 0.00 2.32
2335 3415 6.147328 AGGATTTTACGTTCTTGCAAGAGTAC 59.853 38.462 27.02 21.96 36.22 2.73
2521 3601 8.633561 CATAGACTCCATGATTGTCTGTACTTA 58.366 37.037 18.69 5.04 40.70 2.24
2524 3604 9.373450 AGACTCCATGATTGTCTGTACTTATAT 57.627 33.333 12.22 0.00 39.29 0.86
2562 3645 2.772568 TTTGATTCAACTGTGCACGG 57.227 45.000 24.22 24.22 0.00 4.94
2615 4213 3.506067 CCGCTCCAACAAATACTTTCCTT 59.494 43.478 0.00 0.00 0.00 3.36
2640 4238 9.454859 TTGTTCCTTTCCAAATATTTGTGTTTT 57.545 25.926 23.24 0.00 36.45 2.43
2641 4239 8.887717 TGTTCCTTTCCAAATATTTGTGTTTTG 58.112 29.630 23.24 9.73 36.45 2.44
2670 4268 6.650807 TCCAGTCTAGTTCTGCTAACAATTTG 59.349 38.462 10.57 0.00 0.00 2.32
2672 4270 7.173218 CCAGTCTAGTTCTGCTAACAATTTGAA 59.827 37.037 2.79 0.00 0.00 2.69
2794 4392 8.874744 TCCACACAATATATTTGATGCATTTG 57.125 30.769 0.00 0.94 0.00 2.32
2848 4448 0.817229 TGTGAATGCCACTGCGTTGA 60.817 50.000 0.00 0.00 46.55 3.18
2923 4523 4.455877 CCACCACTAGAGTTTCCATTGTTC 59.544 45.833 0.00 0.00 0.00 3.18
2927 4527 7.607991 CACCACTAGAGTTTCCATTGTTCTATT 59.392 37.037 0.00 0.00 0.00 1.73
2963 4563 5.372343 TGTAATGCTGACCAATATGTCCT 57.628 39.130 0.00 0.00 34.25 3.85
2973 4573 6.057533 TGACCAATATGTCCTAATGCTCTTG 58.942 40.000 0.00 0.00 34.25 3.02
3011 4679 2.677836 CCATATGCAGTGCGTGTTAAGT 59.322 45.455 20.26 0.00 0.00 2.24
3158 4827 5.240403 TGATACTCCAGTCATTCAGATCTCG 59.760 44.000 0.00 0.00 0.00 4.04
3194 4863 5.068234 TCCTATGTCAAGTTTGGTCTACG 57.932 43.478 0.00 0.00 0.00 3.51
3197 4866 1.139256 TGTCAAGTTTGGTCTACGCCA 59.861 47.619 0.00 0.00 36.62 5.69
3242 4911 8.158025 TCCTTAATTAATGACCCTCTCTTTGA 57.842 34.615 0.00 0.00 0.00 2.69
3259 4928 1.289160 TGAATGCTTGAGCTACCCCT 58.711 50.000 4.44 0.00 42.66 4.79
3261 4930 1.210478 GAATGCTTGAGCTACCCCTGA 59.790 52.381 4.44 0.00 42.66 3.86
3274 4943 0.909610 CCCCTGAGCTTCCACCACTA 60.910 60.000 0.00 0.00 0.00 2.74
3275 4944 1.207791 CCCTGAGCTTCCACCACTAT 58.792 55.000 0.00 0.00 0.00 2.12
3326 4998 4.651778 TGGACACAAATCCGAAAGAGAAT 58.348 39.130 0.00 0.00 42.24 2.40
3368 5040 2.524306 CTGAGGGACAACACTCTCTCT 58.476 52.381 0.00 0.00 45.87 3.10
3401 5073 0.109597 CAATCAAGACAAGCACGCCC 60.110 55.000 0.00 0.00 0.00 6.13
3470 5142 8.418597 TGACCACTACTAAAAGTCACTAGATT 57.581 34.615 0.00 0.00 32.75 2.40
3493 5165 9.631452 GATTTGATTCTCTCTTTTTAAAGTGGG 57.369 33.333 2.44 0.69 37.31 4.61
3503 5175 4.816786 TTTTAAAGTGGGTGTTCGCTAC 57.183 40.909 0.00 0.00 0.00 3.58
3508 5180 0.108992 GTGGGTGTTCGCTACGATCA 60.109 55.000 0.00 0.00 35.23 2.92
3509 5181 0.821517 TGGGTGTTCGCTACGATCAT 59.178 50.000 4.30 0.00 37.78 2.45
3524 5196 2.667137 GATCATGTCGTAGGCTAGTGC 58.333 52.381 0.00 0.00 38.76 4.40
3528 5200 2.363788 TGTCGTAGGCTAGTGCAAAG 57.636 50.000 0.00 0.00 41.91 2.77
3542 5214 6.348868 GCTAGTGCAAAGCTTAAGACATCTTT 60.349 38.462 6.67 3.41 39.41 2.52
3544 5216 7.510549 AGTGCAAAGCTTAAGACATCTTTTA 57.489 32.000 6.67 0.00 37.40 1.52
3545 5217 8.115490 AGTGCAAAGCTTAAGACATCTTTTAT 57.885 30.769 6.67 0.00 37.40 1.40
3598 5270 2.523015 GATGCATCGCTTCAAAACCTG 58.477 47.619 11.68 0.00 33.71 4.00
3610 5282 6.371389 GCTTCAAAACCTGTGTTAGATGTAC 58.629 40.000 0.00 0.00 33.30 2.90
3614 5286 5.514500 AAACCTGTGTTAGATGTACCCAT 57.486 39.130 0.00 0.00 33.30 4.00
3629 5301 1.039233 CCCATGTGGCCATTGAGGTC 61.039 60.000 9.72 0.00 44.53 3.85
3632 5304 0.107508 ATGTGGCCATTGAGGTCTCG 60.108 55.000 9.72 0.00 44.59 4.04
3675 5414 3.857157 ATAGGGGCATACACGTTGATT 57.143 42.857 0.00 0.00 0.00 2.57
3687 5426 7.623297 GCATACACGTTGATTACATTGAGAACA 60.623 37.037 0.00 0.00 0.00 3.18
3694 5433 6.817765 TGATTACATTGAGAACAAAGTCCC 57.182 37.500 0.00 0.00 38.56 4.46
3722 5461 2.173356 CCAGCTTGACCAGGATAATCCA 59.827 50.000 0.00 0.00 39.61 3.41
3757 5496 0.956633 GACGTCTACCACTCCACACA 59.043 55.000 8.70 0.00 0.00 3.72
3885 5626 5.147032 TCCATTTGGTTTCTTGGACTCAAT 58.853 37.500 0.00 0.00 33.40 2.57
3896 5637 5.359756 TCTTGGACTCAATGGATATCAACG 58.640 41.667 4.83 0.00 31.75 4.10
3947 5698 2.231478 CCGAAGCTGTCAGAGTTCCTAA 59.769 50.000 3.32 0.00 0.00 2.69
3949 5700 3.258228 GAAGCTGTCAGAGTTCCTAAGC 58.742 50.000 3.32 0.00 0.00 3.09
4006 5759 3.526534 AGCTTCCTTATTCTTCAGTCGC 58.473 45.455 0.00 0.00 0.00 5.19
4012 5765 3.512680 CTTATTCTTCAGTCGCCGAGTT 58.487 45.455 0.00 0.00 0.00 3.01
4043 5799 6.017440 CGAAGACCCTTCATTTTTCACTACAA 60.017 38.462 7.38 0.00 0.00 2.41
4052 5808 0.533308 TTTCACTACAAGCGGGCGTT 60.533 50.000 0.00 0.00 0.00 4.84
4081 5837 2.621763 GCCACTAAGGATGCGATGG 58.378 57.895 0.00 0.00 41.22 3.51
4104 5865 3.607741 CTGATCCTTGCTCACTTGTCAT 58.392 45.455 0.00 0.00 0.00 3.06
4207 5972 0.032678 CGCATCGCTGAGAGGGTTAT 59.967 55.000 0.00 0.00 0.00 1.89
4242 6007 4.494091 TCTTCTGGGTTTCATCTCCATC 57.506 45.455 0.00 0.00 0.00 3.51
4367 6317 7.170489 GTCTTGTAGGGTACAAACAAAGAGTAC 59.830 40.741 0.00 0.00 46.90 2.73
4407 6360 3.146066 TGACAATTTCCCTCGTTTCAGG 58.854 45.455 0.00 0.00 0.00 3.86
4521 6474 5.784390 ACAGGTATGATAATCTGCTGATCCT 59.216 40.000 6.55 4.46 31.51 3.24
4568 6521 2.097954 ACATATTGACCATGTTGCTGCG 59.902 45.455 0.00 0.00 32.72 5.18
4946 7184 3.795688 AATCAGGCAAAGACCTCTGAA 57.204 42.857 0.00 0.00 38.26 3.02
5027 7287 5.086621 GGCCTTTATGGGATGGACATTTAT 58.913 41.667 0.00 0.00 36.00 1.40
5039 7299 9.232473 GGGATGGACATTTATAAGAATAAGGTC 57.768 37.037 0.00 0.00 35.29 3.85
5066 7326 9.706691 TTAGAATTCTTACAAAGTGAACGATCT 57.293 29.630 14.36 0.00 0.00 2.75
5143 7403 3.808466 TTCACTCATCGCTGATAGCTT 57.192 42.857 0.00 0.00 39.60 3.74
5183 7443 4.635765 CACGTCATATTTCTTGATGGTGGT 59.364 41.667 0.00 0.00 34.97 4.16
5192 7452 2.426024 TCTTGATGGTGGTAGTAGCGTC 59.574 50.000 0.00 0.00 35.28 5.19
5219 7479 7.645340 AGAGTTATGCAAAATCATTTCGCATAC 59.355 33.333 14.18 10.13 40.74 2.39
5425 7689 1.025647 ACGTCGAGGAGTCAGGTAGC 61.026 60.000 12.85 0.00 0.00 3.58
5785 8057 1.235724 ACCTACAAGCGTTTCAAGGC 58.764 50.000 8.55 0.00 39.92 4.35
5864 8136 9.525409 GTAAGTGAAAACTCTAAAGTAGTGTGA 57.475 33.333 0.00 0.00 33.48 3.58
5924 8196 3.264104 CCCTGGCAAAAGCAAATGTATG 58.736 45.455 0.00 0.00 0.00 2.39
6335 8627 3.019564 AGGAGTTGCATTTGGTATCAGC 58.980 45.455 0.00 0.00 0.00 4.26
6479 8777 4.321008 GGCAGGATATGAAGTTGCATGATG 60.321 45.833 0.00 0.00 36.53 3.07
6492 8795 1.877258 GCATGATGAGTAGCCTGCCTC 60.877 57.143 0.00 0.00 0.00 4.70
6586 8891 5.163519 GGCACATTTTATATGGCTGAGTGTT 60.164 40.000 0.00 0.00 36.08 3.32
6587 8892 6.039270 GGCACATTTTATATGGCTGAGTGTTA 59.961 38.462 0.00 0.00 36.08 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.816144 TGAACAAGTATTTGAAAAATGCTGAAC 58.184 29.630 4.81 0.02 37.73 3.18
2 3 8.939201 TGAACAAGTATTTGAAAAATGCTGAA 57.061 26.923 4.81 0.00 37.73 3.02
3 4 8.816144 GTTGAACAAGTATTTGAAAAATGCTGA 58.184 29.630 4.81 0.00 37.73 4.26
5 6 8.715191 TGTTGAACAAGTATTTGAAAAATGCT 57.285 26.923 4.81 0.00 37.73 3.79
6 7 9.934190 AATGTTGAACAAGTATTTGAAAAATGC 57.066 25.926 0.62 0.00 37.73 3.56
61 62 8.945057 ACAAGCAATTAAAAATGTTGAACAAGT 58.055 25.926 0.62 0.00 0.00 3.16
62 63 9.771915 AACAAGCAATTAAAAATGTTGAACAAG 57.228 25.926 0.62 0.00 30.46 3.16
63 64 9.766277 GAACAAGCAATTAAAAATGTTGAACAA 57.234 25.926 0.62 0.00 31.68 2.83
64 65 8.939929 TGAACAAGCAATTAAAAATGTTGAACA 58.060 25.926 0.00 0.00 31.68 3.18
65 66 9.766277 TTGAACAAGCAATTAAAAATGTTGAAC 57.234 25.926 0.00 0.00 31.68 3.18
102 103 9.814899 AGTGTTTGAAAAATTGTTGATCATGTA 57.185 25.926 0.00 0.00 0.00 2.29
103 104 8.721019 AGTGTTTGAAAAATTGTTGATCATGT 57.279 26.923 0.00 0.00 0.00 3.21
104 105 9.428363 CAAGTGTTTGAAAAATTGTTGATCATG 57.572 29.630 0.00 0.00 36.36 3.07
105 106 9.165035 ACAAGTGTTTGAAAAATTGTTGATCAT 57.835 25.926 0.00 0.00 37.73 2.45
106 107 8.545229 ACAAGTGTTTGAAAAATTGTTGATCA 57.455 26.923 0.00 0.00 37.73 2.92
107 108 9.824534 AAACAAGTGTTTGAAAAATTGTTGATC 57.175 25.926 11.77 0.00 45.55 2.92
249 250 9.921637 AGGAAAATCTTAATCACGCATTAAAAA 57.078 25.926 2.70 0.00 36.66 1.94
251 252 9.997482 GTAGGAAAATCTTAATCACGCATTAAA 57.003 29.630 2.70 0.00 36.66 1.52
252 253 9.168451 TGTAGGAAAATCTTAATCACGCATTAA 57.832 29.630 1.39 1.39 35.88 1.40
253 254 8.725405 TGTAGGAAAATCTTAATCACGCATTA 57.275 30.769 0.00 0.00 0.00 1.90
254 255 7.624360 TGTAGGAAAATCTTAATCACGCATT 57.376 32.000 0.00 0.00 0.00 3.56
255 256 7.807977 ATGTAGGAAAATCTTAATCACGCAT 57.192 32.000 0.00 0.00 0.00 4.73
256 257 8.902540 ATATGTAGGAAAATCTTAATCACGCA 57.097 30.769 0.00 0.00 0.00 5.24
349 350 9.411801 GCCTCGATTTTTCTTCTTTTTAATTCT 57.588 29.630 0.00 0.00 0.00 2.40
350 351 9.411801 AGCCTCGATTTTTCTTCTTTTTAATTC 57.588 29.630 0.00 0.00 0.00 2.17
351 352 9.196552 CAGCCTCGATTTTTCTTCTTTTTAATT 57.803 29.630 0.00 0.00 0.00 1.40
352 353 8.360390 ACAGCCTCGATTTTTCTTCTTTTTAAT 58.640 29.630 0.00 0.00 0.00 1.40
353 354 7.647715 CACAGCCTCGATTTTTCTTCTTTTTAA 59.352 33.333 0.00 0.00 0.00 1.52
354 355 7.138736 CACAGCCTCGATTTTTCTTCTTTTTA 58.861 34.615 0.00 0.00 0.00 1.52
355 356 5.979517 CACAGCCTCGATTTTTCTTCTTTTT 59.020 36.000 0.00 0.00 0.00 1.94
356 357 5.067805 ACACAGCCTCGATTTTTCTTCTTTT 59.932 36.000 0.00 0.00 0.00 2.27
357 358 4.580580 ACACAGCCTCGATTTTTCTTCTTT 59.419 37.500 0.00 0.00 0.00 2.52
358 359 4.137543 ACACAGCCTCGATTTTTCTTCTT 58.862 39.130 0.00 0.00 0.00 2.52
359 360 3.744660 ACACAGCCTCGATTTTTCTTCT 58.255 40.909 0.00 0.00 0.00 2.85
360 361 4.691216 ACTACACAGCCTCGATTTTTCTTC 59.309 41.667 0.00 0.00 0.00 2.87
361 362 4.642429 ACTACACAGCCTCGATTTTTCTT 58.358 39.130 0.00 0.00 0.00 2.52
362 363 4.273148 ACTACACAGCCTCGATTTTTCT 57.727 40.909 0.00 0.00 0.00 2.52
363 364 4.329256 GGTACTACACAGCCTCGATTTTTC 59.671 45.833 0.00 0.00 0.00 2.29
364 365 4.251268 GGTACTACACAGCCTCGATTTTT 58.749 43.478 0.00 0.00 0.00 1.94
365 366 3.369157 GGGTACTACACAGCCTCGATTTT 60.369 47.826 0.00 0.00 0.00 1.82
366 367 2.167900 GGGTACTACACAGCCTCGATTT 59.832 50.000 0.00 0.00 0.00 2.17
367 368 1.755380 GGGTACTACACAGCCTCGATT 59.245 52.381 0.00 0.00 0.00 3.34
368 369 1.400737 GGGTACTACACAGCCTCGAT 58.599 55.000 0.00 0.00 0.00 3.59
369 370 1.028330 CGGGTACTACACAGCCTCGA 61.028 60.000 0.00 0.00 0.00 4.04
370 371 1.432251 CGGGTACTACACAGCCTCG 59.568 63.158 0.00 0.00 0.00 4.63
371 372 1.141234 GCGGGTACTACACAGCCTC 59.859 63.158 0.00 0.00 0.00 4.70
372 373 2.707849 CGCGGGTACTACACAGCCT 61.708 63.158 0.00 0.00 0.00 4.58
373 374 2.202703 CGCGGGTACTACACAGCC 60.203 66.667 0.00 0.00 0.00 4.85
374 375 2.202703 CCGCGGGTACTACACAGC 60.203 66.667 20.10 0.00 0.00 4.40
375 376 1.138247 GTCCGCGGGTACTACACAG 59.862 63.158 27.83 0.00 0.00 3.66
376 377 2.342650 GGTCCGCGGGTACTACACA 61.343 63.158 27.83 0.00 0.00 3.72
377 378 2.048603 AGGTCCGCGGGTACTACAC 61.049 63.158 27.83 14.16 0.00 2.90
378 379 2.048023 CAGGTCCGCGGGTACTACA 61.048 63.158 27.83 0.00 0.00 2.74
379 380 2.779033 CCAGGTCCGCGGGTACTAC 61.779 68.421 27.83 15.80 0.00 2.73
380 381 2.440796 CCAGGTCCGCGGGTACTA 60.441 66.667 27.83 1.12 0.00 1.82
418 419 2.664436 CGGGCCGACTCGTTGAAAC 61.664 63.158 24.41 0.00 0.00 2.78
419 420 2.356553 CGGGCCGACTCGTTGAAA 60.357 61.111 24.41 0.00 0.00 2.69
420 421 4.367023 CCGGGCCGACTCGTTGAA 62.367 66.667 30.79 0.00 0.00 2.69
426 427 4.899239 CATGAGCCGGGCCGACTC 62.899 72.222 31.86 31.86 36.92 3.36
428 429 4.778143 AACATGAGCCGGGCCGAC 62.778 66.667 30.79 18.19 0.00 4.79
429 430 4.467084 GAACATGAGCCGGGCCGA 62.467 66.667 30.79 7.71 0.00 5.54
431 432 4.778143 ACGAACATGAGCCGGGCC 62.778 66.667 17.02 8.02 0.00 5.80
432 433 3.499737 CACGAACATGAGCCGGGC 61.500 66.667 12.11 12.11 0.00 6.13
433 434 2.819595 CCACGAACATGAGCCGGG 60.820 66.667 2.18 0.18 0.00 5.73
434 435 2.100631 GTCCACGAACATGAGCCGG 61.101 63.158 0.00 0.00 0.00 6.13
435 436 2.100631 GGTCCACGAACATGAGCCG 61.101 63.158 0.00 1.97 0.00 5.52
436 437 1.021390 CAGGTCCACGAACATGAGCC 61.021 60.000 0.00 0.00 32.86 4.70
437 438 0.037326 TCAGGTCCACGAACATGAGC 60.037 55.000 0.00 0.00 35.24 4.26
438 439 2.069273 GTTCAGGTCCACGAACATGAG 58.931 52.381 15.75 0.00 40.61 2.90
439 440 1.604438 CGTTCAGGTCCACGAACATGA 60.604 52.381 18.95 0.00 41.28 3.07
440 441 0.790207 CGTTCAGGTCCACGAACATG 59.210 55.000 18.95 0.00 41.28 3.21
441 442 0.677288 TCGTTCAGGTCCACGAACAT 59.323 50.000 18.95 0.00 42.30 2.71
442 443 0.031585 CTCGTTCAGGTCCACGAACA 59.968 55.000 18.95 9.17 44.45 3.18
443 444 0.666577 CCTCGTTCAGGTCCACGAAC 60.667 60.000 12.17 12.17 44.45 3.95
444 445 1.663739 CCTCGTTCAGGTCCACGAA 59.336 57.895 4.66 0.00 44.45 3.85
445 446 2.273179 CCCTCGTTCAGGTCCACGA 61.273 63.158 3.21 3.21 41.51 4.35
446 447 2.261671 CCCTCGTTCAGGTCCACG 59.738 66.667 0.00 0.00 41.51 4.94
447 448 1.292541 GTCCCTCGTTCAGGTCCAC 59.707 63.158 0.00 0.00 41.51 4.02
448 449 0.544357 ATGTCCCTCGTTCAGGTCCA 60.544 55.000 0.00 0.00 41.51 4.02
449 450 1.409427 CTATGTCCCTCGTTCAGGTCC 59.591 57.143 0.00 0.00 41.51 4.46
450 451 1.202428 GCTATGTCCCTCGTTCAGGTC 60.202 57.143 0.00 0.00 41.51 3.85
451 452 0.824759 GCTATGTCCCTCGTTCAGGT 59.175 55.000 0.00 0.00 41.51 4.00
452 453 0.105039 GGCTATGTCCCTCGTTCAGG 59.895 60.000 0.00 0.00 43.01 3.86
453 454 0.824109 TGGCTATGTCCCTCGTTCAG 59.176 55.000 0.00 0.00 0.00 3.02
454 455 1.138859 CATGGCTATGTCCCTCGTTCA 59.861 52.381 1.12 0.00 0.00 3.18
455 456 1.871080 CATGGCTATGTCCCTCGTTC 58.129 55.000 1.12 0.00 0.00 3.95
456 457 0.179045 GCATGGCTATGTCCCTCGTT 60.179 55.000 12.04 0.00 36.65 3.85
457 458 1.447643 GCATGGCTATGTCCCTCGT 59.552 57.895 12.04 0.00 36.65 4.18
458 459 1.302033 GGCATGGCTATGTCCCTCG 60.302 63.158 12.86 0.00 36.65 4.63
459 460 4.809070 GGCATGGCTATGTCCCTC 57.191 61.111 12.86 0.00 36.65 4.30
463 464 2.203195 TGCGGGCATGGCTATGTC 60.203 61.111 19.78 9.22 38.20 3.06
464 465 2.516930 GTGCGGGCATGGCTATGT 60.517 61.111 19.78 0.00 36.65 2.29
465 466 3.653009 CGTGCGGGCATGGCTATG 61.653 66.667 19.78 5.55 37.36 2.23
470 471 3.646023 ATTTTGCGTGCGGGCATGG 62.646 57.895 14.18 3.03 43.52 3.66
471 472 2.125991 ATTTTGCGTGCGGGCATG 60.126 55.556 8.48 8.48 43.52 4.06
472 473 2.125991 CATTTTGCGTGCGGGCAT 60.126 55.556 2.10 0.00 43.52 4.40
482 483 0.667184 CAAGGGGACACGCATTTTGC 60.667 55.000 0.00 0.00 40.69 3.68
483 484 0.667184 GCAAGGGGACACGCATTTTG 60.667 55.000 0.00 0.00 0.00 2.44
484 485 0.827507 AGCAAGGGGACACGCATTTT 60.828 50.000 0.00 0.00 32.65 1.82
485 486 1.228552 AGCAAGGGGACACGCATTT 60.229 52.632 0.00 0.00 32.65 2.32
486 487 1.973281 CAGCAAGGGGACACGCATT 60.973 57.895 0.00 0.00 32.65 3.56
487 488 2.360350 CAGCAAGGGGACACGCAT 60.360 61.111 0.00 0.00 32.65 4.73
490 491 3.850098 AAGGCAGCAAGGGGACACG 62.850 63.158 0.00 0.00 0.00 4.49
491 492 1.531602 AAAGGCAGCAAGGGGACAC 60.532 57.895 0.00 0.00 0.00 3.67
492 493 1.531365 CAAAGGCAGCAAGGGGACA 60.531 57.895 0.00 0.00 0.00 4.02
493 494 0.251165 TACAAAGGCAGCAAGGGGAC 60.251 55.000 0.00 0.00 0.00 4.46
494 495 0.251165 GTACAAAGGCAGCAAGGGGA 60.251 55.000 0.00 0.00 0.00 4.81
495 496 1.250840 GGTACAAAGGCAGCAAGGGG 61.251 60.000 0.00 0.00 0.00 4.79
496 497 0.539438 TGGTACAAAGGCAGCAAGGG 60.539 55.000 0.00 0.00 31.92 3.95
497 498 0.598065 GTGGTACAAAGGCAGCAAGG 59.402 55.000 0.00 0.00 44.16 3.61
498 499 1.609208 AGTGGTACAAAGGCAGCAAG 58.391 50.000 0.00 0.00 44.16 4.01
499 500 2.940994 TAGTGGTACAAAGGCAGCAA 57.059 45.000 0.00 0.00 44.16 3.91
500 501 2.940994 TTAGTGGTACAAAGGCAGCA 57.059 45.000 0.00 0.00 44.16 4.41
501 502 4.577834 TTTTTAGTGGTACAAAGGCAGC 57.422 40.909 0.00 0.00 44.16 5.25
521 522 0.319469 CGGACAAAGGCGGCATTTTT 60.319 50.000 13.08 3.93 0.00 1.94
522 523 1.175983 TCGGACAAAGGCGGCATTTT 61.176 50.000 13.08 0.00 0.00 1.82
523 524 1.175983 TTCGGACAAAGGCGGCATTT 61.176 50.000 13.08 6.82 0.00 2.32
524 525 1.175983 TTTCGGACAAAGGCGGCATT 61.176 50.000 13.08 1.46 0.00 3.56
525 526 1.175983 TTTTCGGACAAAGGCGGCAT 61.176 50.000 13.08 0.00 0.00 4.40
526 527 1.384989 TTTTTCGGACAAAGGCGGCA 61.385 50.000 13.08 0.00 0.00 5.69
527 528 0.663269 CTTTTTCGGACAAAGGCGGC 60.663 55.000 0.00 0.00 0.00 6.53
528 529 0.666374 ACTTTTTCGGACAAAGGCGG 59.334 50.000 18.02 0.00 35.82 6.13
529 530 1.064952 ACACTTTTTCGGACAAAGGCG 59.935 47.619 18.02 12.06 35.82 5.52
530 531 2.863401 ACACTTTTTCGGACAAAGGC 57.137 45.000 18.02 0.00 35.82 4.35
531 532 7.489757 TCAATTTTACACTTTTTCGGACAAAGG 59.510 33.333 18.02 10.85 35.82 3.11
532 533 8.401046 TCAATTTTACACTTTTTCGGACAAAG 57.599 30.769 13.57 13.57 37.29 2.77
533 534 7.009723 GCTCAATTTTACACTTTTTCGGACAAA 59.990 33.333 0.00 0.00 0.00 2.83
534 535 6.474102 GCTCAATTTTACACTTTTTCGGACAA 59.526 34.615 0.00 0.00 0.00 3.18
535 536 5.974751 GCTCAATTTTACACTTTTTCGGACA 59.025 36.000 0.00 0.00 0.00 4.02
536 537 5.115021 CGCTCAATTTTACACTTTTTCGGAC 59.885 40.000 0.00 0.00 0.00 4.79
537 538 5.209240 CGCTCAATTTTACACTTTTTCGGA 58.791 37.500 0.00 0.00 0.00 4.55
538 539 4.143618 GCGCTCAATTTTACACTTTTTCGG 60.144 41.667 0.00 0.00 0.00 4.30
539 540 4.429812 CGCGCTCAATTTTACACTTTTTCG 60.430 41.667 5.56 0.00 0.00 3.46
540 541 4.143618 CCGCGCTCAATTTTACACTTTTTC 60.144 41.667 5.56 0.00 0.00 2.29
541 542 3.733727 CCGCGCTCAATTTTACACTTTTT 59.266 39.130 5.56 0.00 0.00 1.94
542 543 3.003897 TCCGCGCTCAATTTTACACTTTT 59.996 39.130 5.56 0.00 0.00 2.27
543 544 2.550606 TCCGCGCTCAATTTTACACTTT 59.449 40.909 5.56 0.00 0.00 2.66
544 545 2.095919 GTCCGCGCTCAATTTTACACTT 60.096 45.455 5.56 0.00 0.00 3.16
545 546 1.463444 GTCCGCGCTCAATTTTACACT 59.537 47.619 5.56 0.00 0.00 3.55
546 547 1.463444 AGTCCGCGCTCAATTTTACAC 59.537 47.619 5.56 0.00 0.00 2.90
547 548 1.730064 GAGTCCGCGCTCAATTTTACA 59.270 47.619 5.56 0.00 35.67 2.41
548 549 1.730064 TGAGTCCGCGCTCAATTTTAC 59.270 47.619 13.12 0.00 41.93 2.01
549 550 1.999735 CTGAGTCCGCGCTCAATTTTA 59.000 47.619 15.70 0.00 43.92 1.52
550 551 0.798776 CTGAGTCCGCGCTCAATTTT 59.201 50.000 15.70 0.00 43.92 1.82
551 552 1.021390 CCTGAGTCCGCGCTCAATTT 61.021 55.000 15.70 0.00 43.92 1.82
552 553 1.448540 CCTGAGTCCGCGCTCAATT 60.449 57.895 15.70 0.00 43.92 2.32
553 554 1.680522 ATCCTGAGTCCGCGCTCAAT 61.681 55.000 15.70 6.52 43.92 2.57
554 555 1.888436 AATCCTGAGTCCGCGCTCAA 61.888 55.000 15.70 4.63 43.92 3.02
555 556 2.351244 AATCCTGAGTCCGCGCTCA 61.351 57.895 14.45 14.45 42.56 4.26
556 557 1.880340 CAATCCTGAGTCCGCGCTC 60.880 63.158 5.56 3.23 36.12 5.03
557 558 2.185350 CAATCCTGAGTCCGCGCT 59.815 61.111 5.56 0.00 0.00 5.92
558 559 3.567797 GCAATCCTGAGTCCGCGC 61.568 66.667 0.00 0.00 0.00 6.86
559 560 2.892425 GGCAATCCTGAGTCCGCG 60.892 66.667 0.00 0.00 0.00 6.46
560 561 2.514824 GGGCAATCCTGAGTCCGC 60.515 66.667 0.00 0.00 0.00 5.54
561 562 2.202932 CGGGCAATCCTGAGTCCG 60.203 66.667 0.00 0.00 41.45 4.79
562 563 2.514824 GCGGGCAATCCTGAGTCC 60.515 66.667 0.00 0.00 41.45 3.85
563 564 2.109126 GTGCGGGCAATCCTGAGTC 61.109 63.158 0.00 0.00 41.45 3.36
564 565 2.045926 GTGCGGGCAATCCTGAGT 60.046 61.111 0.00 0.00 41.45 3.41
565 566 3.197790 CGTGCGGGCAATCCTGAG 61.198 66.667 0.00 0.00 41.45 3.35
566 567 3.700970 TCGTGCGGGCAATCCTGA 61.701 61.111 0.00 0.00 41.45 3.86
567 568 3.499737 GTCGTGCGGGCAATCCTG 61.500 66.667 0.00 0.00 41.86 3.86
568 569 4.778143 GGTCGTGCGGGCAATCCT 62.778 66.667 0.00 0.00 0.00 3.24
612 613 1.532604 TTGCGCTCGGGAGAAGAGAA 61.533 55.000 9.73 0.00 39.18 2.87
613 614 1.977009 TTGCGCTCGGGAGAAGAGA 60.977 57.895 9.73 0.00 39.18 3.10
614 615 1.807573 GTTGCGCTCGGGAGAAGAG 60.808 63.158 9.73 0.00 39.18 2.85
615 616 1.816863 AAGTTGCGCTCGGGAGAAGA 61.817 55.000 9.73 0.00 39.18 2.87
616 617 0.108804 TAAGTTGCGCTCGGGAGAAG 60.109 55.000 9.73 0.00 39.18 2.85
617 618 0.535335 ATAAGTTGCGCTCGGGAGAA 59.465 50.000 9.73 0.00 39.18 2.87
618 619 0.102481 GATAAGTTGCGCTCGGGAGA 59.898 55.000 9.73 0.00 37.31 3.71
619 620 0.876342 GGATAAGTTGCGCTCGGGAG 60.876 60.000 9.73 0.00 0.00 4.30
620 621 1.143183 GGATAAGTTGCGCTCGGGA 59.857 57.895 9.73 0.00 0.00 5.14
621 622 1.887707 GGGATAAGTTGCGCTCGGG 60.888 63.158 9.73 0.00 0.00 5.14
622 623 1.887707 GGGGATAAGTTGCGCTCGG 60.888 63.158 9.73 0.00 0.00 4.63
623 624 0.876342 GAGGGGATAAGTTGCGCTCG 60.876 60.000 9.73 0.00 43.87 5.03
624 625 2.993539 GAGGGGATAAGTTGCGCTC 58.006 57.895 9.73 1.40 45.87 5.03
625 626 1.527370 GGAGGGGATAAGTTGCGCT 59.473 57.895 9.73 0.00 41.81 5.92
626 627 1.526225 GGGAGGGGATAAGTTGCGC 60.526 63.158 0.00 0.00 0.00 6.09
627 628 1.227556 CGGGAGGGGATAAGTTGCG 60.228 63.158 0.00 0.00 0.00 4.85
628 629 0.106894 CTCGGGAGGGGATAAGTTGC 59.893 60.000 0.00 0.00 0.00 4.17
629 630 0.106894 GCTCGGGAGGGGATAAGTTG 59.893 60.000 0.00 0.00 0.00 3.16
630 631 1.400530 CGCTCGGGAGGGGATAAGTT 61.401 60.000 4.94 0.00 37.68 2.66
631 632 1.833049 CGCTCGGGAGGGGATAAGT 60.833 63.158 4.94 0.00 37.68 2.24
632 633 3.052081 CGCTCGGGAGGGGATAAG 58.948 66.667 4.94 0.00 37.68 1.73
666 667 4.787280 AGAGGGGCGGAGGAGGTG 62.787 72.222 0.00 0.00 0.00 4.00
667 668 4.467107 GAGAGGGGCGGAGGAGGT 62.467 72.222 0.00 0.00 0.00 3.85
729 730 1.066430 GTGGTTGGTAGCGATGGAGAA 60.066 52.381 0.00 0.00 0.00 2.87
736 737 4.382320 GGCGGTGGTTGGTAGCGA 62.382 66.667 0.00 0.00 41.14 4.93
738 739 3.971109 GAGGGCGGTGGTTGGTAGC 62.971 68.421 0.00 0.00 0.00 3.58
754 755 3.649277 CTCGACTTGGGTGGCGGAG 62.649 68.421 0.00 0.00 0.00 4.63
822 823 0.322975 CGGAGCATATGGGGAGAAGG 59.677 60.000 4.56 0.00 0.00 3.46
862 865 4.514577 CTCGATCCGGCAGCGGTT 62.515 66.667 10.76 0.00 0.00 4.44
894 897 1.895966 GTGAGGTACCTCCCCGTTC 59.104 63.158 34.05 13.15 42.09 3.95
895 898 1.980772 CGTGAGGTACCTCCCCGTT 60.981 63.158 34.05 3.08 42.09 4.44
940 944 7.833786 TGCAATTTAAGATCAGAGAGCAAAAT 58.166 30.769 0.00 0.00 0.00 1.82
972 976 5.998981 AGATACCTCGTAGTTATCCTCACAG 59.001 44.000 0.00 0.00 0.00 3.66
988 992 3.244353 CCCACATCCATCACAGATACCTC 60.244 52.174 0.00 0.00 0.00 3.85
994 1008 0.620030 CACCCCACATCCATCACAGA 59.380 55.000 0.00 0.00 0.00 3.41
1067 1084 4.454161 GCACAATGAATATGCCCGTATACA 59.546 41.667 3.32 0.00 33.06 2.29
1098 2149 1.211969 CGGGATAGCGGGTATGACG 59.788 63.158 4.14 5.25 0.00 4.35
1105 2156 1.742880 CATCATGCGGGATAGCGGG 60.743 63.158 0.00 0.00 40.67 6.13
1213 2264 0.394216 TGTGCAGCAACAGAACAGGT 60.394 50.000 0.00 0.00 0.00 4.00
1296 2347 5.308497 TCCCCTGTCACTTGTATTGAGTTTA 59.692 40.000 0.00 0.00 0.00 2.01
1302 2353 3.981071 TCTCCCCTGTCACTTGTATTG 57.019 47.619 0.00 0.00 0.00 1.90
1318 2369 4.868734 ACGTTTTACTTCATCCGAATCTCC 59.131 41.667 0.00 0.00 0.00 3.71
1330 2381 9.836076 AATTTAGCCAAATCTACGTTTTACTTC 57.164 29.630 0.00 0.00 33.09 3.01
1383 2434 6.736110 ATGGAGCACAATTTAGCCAAATAT 57.264 33.333 0.00 0.00 33.09 1.28
1415 2468 4.820897 TGTGTTCTATCAATCAGAAGCGT 58.179 39.130 0.00 0.00 32.81 5.07
1416 2469 5.784750 TTGTGTTCTATCAATCAGAAGCG 57.215 39.130 0.00 0.00 32.81 4.68
1417 2470 7.755591 TGATTTGTGTTCTATCAATCAGAAGC 58.244 34.615 0.00 0.00 32.81 3.86
1457 2510 1.075374 TGCCCCAGACTTTACTTGCAT 59.925 47.619 0.00 0.00 0.00 3.96
1563 2626 4.442753 GCAAGACCAACAAAAATGAAGGGA 60.443 41.667 0.00 0.00 0.00 4.20
1570 2633 1.069978 CCCGGCAAGACCAACAAAAAT 59.930 47.619 0.00 0.00 39.03 1.82
1578 2641 1.223487 GATAAGCCCGGCAAGACCA 59.777 57.895 13.15 0.00 39.03 4.02
1593 2656 3.262405 ACCTTTCGCAGTGGTTAAGGATA 59.738 43.478 13.91 0.00 38.92 2.59
1614 2677 2.009774 CTGCACCATGGCTAACAGTAC 58.990 52.381 13.04 0.00 34.04 2.73
1621 2684 2.804986 TCAAATCTGCACCATGGCTA 57.195 45.000 13.04 0.00 34.04 3.93
1622 2685 1.754803 CATCAAATCTGCACCATGGCT 59.245 47.619 13.04 0.00 34.04 4.75
1647 2710 9.416058 GAGTTAAAACAAAAACCAAAATTAGCG 57.584 29.630 0.00 0.00 0.00 4.26
1695 2758 6.071463 CCAGCGCGATTAAGTATTAACATTC 58.929 40.000 12.10 0.00 44.35 2.67
1745 2808 3.144506 CACTGACACCAGCAAAGAAGAT 58.855 45.455 0.00 0.00 44.16 2.40
1748 2811 2.418368 ACACTGACACCAGCAAAGAA 57.582 45.000 0.00 0.00 44.16 2.52
1814 2877 3.509575 GGCAATGTGTCCCAAAATAGTGA 59.490 43.478 0.00 0.00 0.00 3.41
1816 2879 3.505386 TGGCAATGTGTCCCAAAATAGT 58.495 40.909 0.00 0.00 0.00 2.12
1862 2926 5.020795 TGGTGCTGAATGTTAGTCCTACTA 58.979 41.667 0.00 0.00 0.00 1.82
1913 2977 7.839680 AGCAAAAAGGGGATATCGATTATTT 57.160 32.000 1.71 0.00 0.00 1.40
1922 2986 6.388394 AGAGAGTAGAAGCAAAAAGGGGATAT 59.612 38.462 0.00 0.00 0.00 1.63
1985 3058 6.312426 GTGAAAGTGACCATCATCTAGACAAG 59.688 42.308 0.00 0.00 0.00 3.16
2000 3073 3.120511 GCCTCGAAAGATGTGAAAGTGAC 60.121 47.826 0.00 0.00 40.84 3.67
2052 3125 1.403679 CAAACGACTTTGTTCCTGCCA 59.596 47.619 0.00 0.00 33.31 4.92
2090 3163 7.875041 AGAATAATACTAACCTGCTGCACATAG 59.125 37.037 0.00 4.26 0.00 2.23
2095 3168 5.296780 GCAAGAATAATACTAACCTGCTGCA 59.703 40.000 0.88 0.88 0.00 4.41
2221 3299 8.904834 TGCACTTTTAGTAAGAACAACCATTAA 58.095 29.630 0.00 0.00 0.00 1.40
2223 3301 7.341445 TGCACTTTTAGTAAGAACAACCATT 57.659 32.000 0.00 0.00 0.00 3.16
2304 3384 6.565234 TGCAAGAACGTAAAATCCTGAAAAA 58.435 32.000 0.00 0.00 0.00 1.94
2305 3385 6.137794 TGCAAGAACGTAAAATCCTGAAAA 57.862 33.333 0.00 0.00 0.00 2.29
2335 3415 2.023673 TGGTTTGTCTGCAACCTCTTG 58.976 47.619 6.10 0.00 33.82 3.02
2440 3520 4.142038 GGCCTTGTCCTTTTCTCTAACAA 58.858 43.478 0.00 0.00 0.00 2.83
2447 3527 3.575805 TGAATTGGCCTTGTCCTTTTCT 58.424 40.909 3.32 0.00 0.00 2.52
2562 3645 8.287503 CACCACATTAAGTTTGGTAAGAACTAC 58.712 37.037 5.37 0.00 41.93 2.73
2595 3678 5.453567 ACAAGGAAAGTATTTGTTGGAGC 57.546 39.130 0.00 0.00 39.27 4.70
2615 4213 8.887717 CAAAACACAAATATTTGGAAAGGAACA 58.112 29.630 27.43 0.00 42.34 3.18
2640 4238 3.435275 AGCAGAACTAGACTGGATGACA 58.565 45.455 17.85 0.00 36.09 3.58
2641 4239 5.105716 TGTTAGCAGAACTAGACTGGATGAC 60.106 44.000 17.85 8.98 36.09 3.06
2670 4268 5.783111 AGCAAATCCAACCTTAATGTGTTC 58.217 37.500 0.00 0.00 0.00 3.18
2672 4270 4.832266 TGAGCAAATCCAACCTTAATGTGT 59.168 37.500 0.00 0.00 0.00 3.72
2899 4499 3.650942 ACAATGGAAACTCTAGTGGTGGA 59.349 43.478 0.00 0.00 26.94 4.02
2942 4542 7.573843 GCATTAGGACATATTGGTCAGCATTAC 60.574 40.741 0.00 0.00 39.59 1.89
2944 4544 5.242393 GCATTAGGACATATTGGTCAGCATT 59.758 40.000 0.00 0.00 39.59 3.56
2973 4573 9.144747 CTGCATATGGTTGAGTAGTTGATATAC 57.855 37.037 4.56 0.00 0.00 1.47
3035 4703 2.062971 ATGGGTTTCAGCATAGCCTG 57.937 50.000 0.00 0.00 33.15 4.85
3194 4863 5.675538 AGTATAATGTCAAGAGAGGTTGGC 58.324 41.667 0.00 0.00 32.36 4.52
3197 4866 7.741554 AAGGAGTATAATGTCAAGAGAGGTT 57.258 36.000 0.00 0.00 0.00 3.50
3225 4894 5.441718 AGCATTCAAAGAGAGGGTCATTA 57.558 39.130 0.00 0.00 0.00 1.90
3226 4895 4.313020 AGCATTCAAAGAGAGGGTCATT 57.687 40.909 0.00 0.00 0.00 2.57
3227 4896 4.015084 CAAGCATTCAAAGAGAGGGTCAT 58.985 43.478 0.00 0.00 0.00 3.06
3228 4897 3.072915 TCAAGCATTCAAAGAGAGGGTCA 59.927 43.478 0.00 0.00 0.00 4.02
3242 4911 1.211457 CTCAGGGGTAGCTCAAGCATT 59.789 52.381 4.59 0.00 45.16 3.56
3259 4928 2.906389 AGAACATAGTGGTGGAAGCTCA 59.094 45.455 0.00 0.00 33.76 4.26
3261 4930 4.081420 CACTAGAACATAGTGGTGGAAGCT 60.081 45.833 0.00 0.00 40.76 3.74
3274 4943 2.076863 GCGCCAAAGTCACTAGAACAT 58.923 47.619 0.00 0.00 0.00 2.71
3275 4944 1.070134 AGCGCCAAAGTCACTAGAACA 59.930 47.619 2.29 0.00 0.00 3.18
3326 4998 3.191162 GCATAAGCTTGTGGTGAATGACA 59.809 43.478 22.71 0.00 37.91 3.58
3470 5142 7.559897 ACACCCACTTTAAAAAGAGAGAATCAA 59.440 33.333 9.37 0.00 39.31 2.57
3476 5148 5.748592 CGAACACCCACTTTAAAAAGAGAG 58.251 41.667 9.37 0.00 39.31 3.20
3477 5149 4.035909 GCGAACACCCACTTTAAAAAGAGA 59.964 41.667 9.37 0.00 39.31 3.10
3478 5150 4.036380 AGCGAACACCCACTTTAAAAAGAG 59.964 41.667 9.37 1.48 39.31 2.85
3479 5151 3.949113 AGCGAACACCCACTTTAAAAAGA 59.051 39.130 9.37 0.00 39.31 2.52
3483 5155 2.801679 CGTAGCGAACACCCACTTTAAA 59.198 45.455 0.00 0.00 0.00 1.52
3493 5165 1.513178 CGACATGATCGTAGCGAACAC 59.487 52.381 0.00 0.00 46.25 3.32
3503 5175 2.918549 GCACTAGCCTACGACATGATCG 60.919 54.545 13.71 13.71 45.76 3.69
3508 5180 2.893637 CTTTGCACTAGCCTACGACAT 58.106 47.619 0.00 0.00 41.13 3.06
3509 5181 1.671850 GCTTTGCACTAGCCTACGACA 60.672 52.381 8.49 0.00 41.13 4.35
3522 5194 9.410556 GAAATAAAAGATGTCTTAAGCTTTGCA 57.589 29.630 3.20 0.00 34.61 4.08
3542 5214 4.447290 TCGCATCGGGAATCAAGAAATAA 58.553 39.130 0.00 0.00 0.00 1.40
3544 5216 2.917933 TCGCATCGGGAATCAAGAAAT 58.082 42.857 0.00 0.00 0.00 2.17
3545 5217 2.394930 TCGCATCGGGAATCAAGAAA 57.605 45.000 0.00 0.00 0.00 2.52
3557 5229 1.571460 GGCTTTGGCTATCGCATCG 59.429 57.895 0.00 0.00 38.10 3.84
3598 5270 2.943033 GCCACATGGGTACATCTAACAC 59.057 50.000 0.00 0.00 39.65 3.32
3610 5282 1.000739 ACCTCAATGGCCACATGGG 59.999 57.895 8.16 10.91 40.22 4.00
3614 5286 1.296392 CGAGACCTCAATGGCCACA 59.704 57.895 8.16 0.00 40.22 4.17
3629 5301 4.358851 CAAGAAGCTCTTCATAGGACGAG 58.641 47.826 6.53 6.53 41.15 4.18
3632 5304 3.202097 GGCAAGAAGCTCTTCATAGGAC 58.798 50.000 11.69 0.00 44.79 3.85
3675 5414 4.651778 CTGGGGACTTTGTTCTCAATGTA 58.348 43.478 0.00 0.00 40.40 2.29
3687 5426 1.685820 GCTGGTAGCTGGGGACTTT 59.314 57.895 0.00 0.00 38.45 2.66
3722 5461 4.316823 TCAGGAGGCGTGGGGACT 62.317 66.667 0.00 0.00 35.84 3.85
3885 5626 1.964223 GAGGAGAGGCGTTGATATCCA 59.036 52.381 0.00 0.00 0.00 3.41
3896 5637 1.395826 ATACAGCGGTGAGGAGAGGC 61.396 60.000 23.44 0.00 0.00 4.70
3949 5700 4.657436 AGAATCGTTTAGGTAGCTGGAG 57.343 45.455 4.27 0.00 0.00 3.86
4006 5759 1.664151 GGGTCTTCGCATTTAACTCGG 59.336 52.381 0.00 0.00 0.00 4.63
4012 5765 5.975693 AAAATGAAGGGTCTTCGCATTTA 57.024 34.783 0.00 0.00 37.97 1.40
4043 5799 2.511600 GCTACATCAACGCCCGCT 60.512 61.111 0.00 0.00 0.00 5.52
4052 5808 0.527600 CTTAGTGGCGCGCTACATCA 60.528 55.000 41.90 26.79 0.00 3.07
4081 5837 1.093159 CAAGTGAGCAAGGATCAGGC 58.907 55.000 0.00 0.00 0.00 4.85
4104 5865 4.083271 CGCAGTATCTTGATCTGGATACGA 60.083 45.833 21.33 0.00 45.05 3.43
4163 5928 1.898574 CAGAACCCTGGTGTGGTGC 60.899 63.158 0.00 0.00 35.88 5.01
4207 5972 2.899256 CCAGAAGAAAATCTTTGGGGCA 59.101 45.455 10.75 0.00 36.73 5.36
4242 6007 3.567164 ACATCAAAACTCAGCCACTCTTG 59.433 43.478 0.00 0.00 0.00 3.02
4521 6474 3.994392 GTGACTCTTATTTGCTCGGACAA 59.006 43.478 0.00 0.00 0.00 3.18
4568 6521 1.896465 AGTGTCAGGCCTCTAGTCAAC 59.104 52.381 0.00 0.00 0.00 3.18
4663 6758 9.988350 CACATGGAAGTAAAGTTATCATTGTAC 57.012 33.333 0.00 0.00 0.00 2.90
4946 7184 3.369576 GGGTTTCTAACATTCCTCGCTCT 60.370 47.826 0.00 0.00 0.00 4.09
4998 7236 0.818040 ATCCCATAAAGGCCGCGAAC 60.818 55.000 8.23 0.00 35.39 3.95
5039 7299 9.959775 GATCGTTCACTTTGTAAGAATTCTAAG 57.040 33.333 8.75 10.91 0.00 2.18
5040 7300 9.706691 AGATCGTTCACTTTGTAAGAATTCTAA 57.293 29.630 8.75 0.00 0.00 2.10
5042 7302 7.872993 TCAGATCGTTCACTTTGTAAGAATTCT 59.127 33.333 0.88 0.88 0.00 2.40
5043 7303 8.018677 TCAGATCGTTCACTTTGTAAGAATTC 57.981 34.615 0.00 0.00 0.00 2.17
5045 7305 7.819415 TCATCAGATCGTTCACTTTGTAAGAAT 59.181 33.333 0.00 0.00 0.00 2.40
5048 7308 6.587990 ACTCATCAGATCGTTCACTTTGTAAG 59.412 38.462 0.00 0.00 0.00 2.34
5066 7326 8.551440 CCCCATAATCCAAATATAGACTCATCA 58.449 37.037 0.00 0.00 0.00 3.07
5143 7403 2.746904 ACGTGATGAAATGAATCGGCAA 59.253 40.909 0.00 0.00 0.00 4.52
5183 7443 4.976224 TTGCATAACTCTGACGCTACTA 57.024 40.909 0.00 0.00 0.00 1.82
5192 7452 6.252036 GCGAAATGATTTTGCATAACTCTG 57.748 37.500 21.93 0.00 46.89 3.35
5219 7479 6.523840 TGTCTCCCAATCCAATTTCAAAAAG 58.476 36.000 0.00 0.00 0.00 2.27
5255 7515 1.329256 TAGCTCGGTAATGCTCCTCC 58.671 55.000 0.00 0.00 40.35 4.30
5388 7652 4.390909 CGACGTAAGAATAACCTTTTGCCT 59.609 41.667 0.00 0.00 43.62 4.75
5425 7689 1.652563 CATCCCATGCGAGCACATG 59.347 57.895 0.00 7.25 45.74 3.21
5661 7925 2.422479 CTCCACATGCTGAAACCATCTG 59.578 50.000 0.00 0.00 0.00 2.90
5785 8057 2.159572 CGTTCCGGTGGCAGATTTTTAG 60.160 50.000 0.00 0.00 0.00 1.85
5864 8136 4.346127 TCAGGCATGTACAATCTGCTATCT 59.654 41.667 17.09 5.83 36.18 1.98
5924 8196 2.307098 ACTAATATGGCATGGAGGGAGC 59.693 50.000 10.98 0.00 0.00 4.70
6096 8368 7.201974 GGAATGATTTCCTTCACCATCATGAAT 60.202 37.037 0.00 0.00 46.80 2.57
6492 8795 2.619147 CTGGACTCAGATGCAAGACTG 58.381 52.381 11.09 11.09 43.49 3.51
6726 9117 5.945191 AGTACTCCCTCTGTAAAGTAGTGAC 59.055 44.000 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.