Multiple sequence alignment - TraesCS3B01G556800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G556800 chr3B 100.000 2318 0 0 1 2318 790650492 790648175 0.000000e+00 4281
1 TraesCS3B01G556800 chr3B 96.516 1349 47 0 1 1349 663074578 663073230 0.000000e+00 2231
2 TraesCS3B01G556800 chr3B 95.539 1345 59 1 1 1345 528683382 528682039 0.000000e+00 2150
3 TraesCS3B01G556800 chr3B 84.003 1344 211 2 3 1344 811551799 811550458 0.000000e+00 1288
4 TraesCS3B01G556800 chr2B 96.307 1354 49 1 1 1354 547051186 547049834 0.000000e+00 2222
5 TraesCS3B01G556800 chr2B 84.280 1355 204 9 3 1352 82858311 82859661 0.000000e+00 1314
6 TraesCS3B01G556800 chr7B 94.799 1346 69 1 1 1346 655581220 655582564 0.000000e+00 2097
7 TraesCS3B01G556800 chr7B 83.185 1350 223 2 4 1351 64627922 64629269 0.000000e+00 1232
8 TraesCS3B01G556800 chr3A 89.665 1345 136 3 3 1346 697067496 697066154 0.000000e+00 1711
9 TraesCS3B01G556800 chr6B 86.776 1346 176 2 3 1347 658738189 658739533 0.000000e+00 1498
10 TraesCS3B01G556800 chr3D 84.961 645 65 18 1676 2318 590740186 590739572 1.960000e-175 625
11 TraesCS3B01G556800 chr3D 86.118 389 41 10 1775 2155 590229121 590228738 7.710000e-110 407
12 TraesCS3B01G556800 chr7D 85.897 390 44 7 1775 2155 99616716 99616329 2.770000e-109 405
13 TraesCS3B01G556800 chr6A 85.347 389 41 10 1775 2154 595231518 595231899 2.790000e-104 388
14 TraesCS3B01G556800 chr5D 85.166 391 44 11 1775 2155 553466498 553466112 2.790000e-104 388
15 TraesCS3B01G556800 chr2D 85.677 384 38 10 1775 2149 485599216 485598841 2.790000e-104 388
16 TraesCS3B01G556800 chr2D 85.455 385 38 11 1775 2149 485642415 485642039 3.610000e-103 385
17 TraesCS3B01G556800 chr2D 85.013 387 45 8 1778 2155 8142762 8142380 4.670000e-102 381
18 TraesCS3B01G556800 chr2D 85.233 386 38 12 1775 2150 485606101 485605725 1.680000e-101 379
19 TraesCS3B01G556800 chr4B 84.184 392 50 11 1775 2156 642966480 642966091 1.010000e-98 370
20 TraesCS3B01G556800 chrUn 95.181 83 4 0 1434 1516 86479013 86479095 5.200000e-27 132
21 TraesCS3B01G556800 chrUn 95.181 83 4 0 1434 1516 186190456 186190374 5.200000e-27 132
22 TraesCS3B01G556800 chrUn 95.181 83 4 0 1434 1516 221547458 221547376 5.200000e-27 132
23 TraesCS3B01G556800 chr6D 95.181 83 4 0 1434 1516 57922183 57922265 5.200000e-27 132
24 TraesCS3B01G556800 chr6D 95.181 83 4 0 1434 1516 283153162 283153080 5.200000e-27 132
25 TraesCS3B01G556800 chr6D 95.181 83 4 0 1434 1516 369917048 369916966 5.200000e-27 132
26 TraesCS3B01G556800 chr6D 95.181 83 4 0 1434 1516 369999413 369999331 5.200000e-27 132
27 TraesCS3B01G556800 chr6D 95.181 83 4 0 1434 1516 458965909 458965991 5.200000e-27 132
28 TraesCS3B01G556800 chr1D 95.181 83 4 0 1434 1516 212466909 212466827 5.200000e-27 132
29 TraesCS3B01G556800 chr7A 94.872 78 4 0 1344 1421 240328708 240328631 3.130000e-24 122


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G556800 chr3B 790648175 790650492 2317 True 4281 4281 100.000 1 2318 1 chr3B.!!$R3 2317
1 TraesCS3B01G556800 chr3B 663073230 663074578 1348 True 2231 2231 96.516 1 1349 1 chr3B.!!$R2 1348
2 TraesCS3B01G556800 chr3B 528682039 528683382 1343 True 2150 2150 95.539 1 1345 1 chr3B.!!$R1 1344
3 TraesCS3B01G556800 chr3B 811550458 811551799 1341 True 1288 1288 84.003 3 1344 1 chr3B.!!$R4 1341
4 TraesCS3B01G556800 chr2B 547049834 547051186 1352 True 2222 2222 96.307 1 1354 1 chr2B.!!$R1 1353
5 TraesCS3B01G556800 chr2B 82858311 82859661 1350 False 1314 1314 84.280 3 1352 1 chr2B.!!$F1 1349
6 TraesCS3B01G556800 chr7B 655581220 655582564 1344 False 2097 2097 94.799 1 1346 1 chr7B.!!$F2 1345
7 TraesCS3B01G556800 chr7B 64627922 64629269 1347 False 1232 1232 83.185 4 1351 1 chr7B.!!$F1 1347
8 TraesCS3B01G556800 chr3A 697066154 697067496 1342 True 1711 1711 89.665 3 1346 1 chr3A.!!$R1 1343
9 TraesCS3B01G556800 chr6B 658738189 658739533 1344 False 1498 1498 86.776 3 1347 1 chr6B.!!$F1 1344
10 TraesCS3B01G556800 chr3D 590739572 590740186 614 True 625 625 84.961 1676 2318 1 chr3D.!!$R2 642

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
263 264 0.975887 ATCGCTTTTGCCAATGGGTT 59.024 45.0 0.0 0.0 43.93 4.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2159 2167 0.10412 TACACAGTGCAGCGACAGTT 59.896 50.0 0.0 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
108 109 2.750948 CGTCTTCGGGAGTTTTTCTGA 58.249 47.619 0.00 0.00 0.00 3.27
150 151 4.591321 ATTAAAGATCAGGGCTTCACCA 57.409 40.909 0.00 0.00 42.05 4.17
183 184 2.442413 GATTTCGTTCCATGGTTCCCA 58.558 47.619 12.58 0.00 38.19 4.37
235 236 3.144506 GCATATAAGCTGGTCACATGCT 58.855 45.455 10.41 0.00 38.87 3.79
240 241 3.572632 AAGCTGGTCACATGCTATCAT 57.427 42.857 0.00 0.00 35.85 2.45
263 264 0.975887 ATCGCTTTTGCCAATGGGTT 59.024 45.000 0.00 0.00 43.93 4.11
489 491 2.449548 CTGCACACAGGCTAGAACG 58.550 57.895 0.00 0.00 40.48 3.95
634 636 3.834231 CCTGTTGATTTGGAGGATTTGGT 59.166 43.478 0.00 0.00 0.00 3.67
753 755 3.594134 CAAGTTCACTGTGGAGGAGATC 58.406 50.000 8.11 0.00 0.00 2.75
955 957 6.628175 CGCCCTCTTTGCAGCTTATAGATATA 60.628 42.308 0.00 0.00 0.00 0.86
1036 1038 1.219124 GCCATTGAGCACTCCGAGA 59.781 57.895 1.33 0.00 0.00 4.04
1370 1372 9.764363 AAGAAGAAGATCAATTTTGGGTTAAAC 57.236 29.630 0.00 0.00 0.00 2.01
1371 1373 8.367911 AGAAGAAGATCAATTTTGGGTTAAACC 58.632 33.333 1.28 1.28 37.60 3.27
1372 1374 6.687604 AGAAGATCAATTTTGGGTTAAACCG 58.312 36.000 4.77 0.00 39.83 4.44
1373 1375 6.492087 AGAAGATCAATTTTGGGTTAAACCGA 59.508 34.615 4.77 0.00 39.83 4.69
1374 1376 6.020971 AGATCAATTTTGGGTTAAACCGAC 57.979 37.500 4.77 0.00 39.83 4.79
1375 1377 5.536916 AGATCAATTTTGGGTTAAACCGACA 59.463 36.000 4.77 0.00 39.83 4.35
1376 1378 5.593679 TCAATTTTGGGTTAAACCGACAA 57.406 34.783 4.77 1.30 39.83 3.18
1377 1379 5.349809 TCAATTTTGGGTTAAACCGACAAC 58.650 37.500 4.77 0.00 39.83 3.32
1378 1380 3.797451 TTTTGGGTTAAACCGACAACC 57.203 42.857 4.77 0.00 42.94 3.77
1379 1381 2.732844 TTGGGTTAAACCGACAACCT 57.267 45.000 4.77 0.00 43.17 3.50
1380 1382 1.970092 TGGGTTAAACCGACAACCTG 58.030 50.000 4.77 0.00 43.17 4.00
1381 1383 1.489649 TGGGTTAAACCGACAACCTGA 59.510 47.619 4.77 0.00 43.17 3.86
1382 1384 2.106857 TGGGTTAAACCGACAACCTGAT 59.893 45.455 4.77 0.00 43.17 2.90
1383 1385 3.151554 GGGTTAAACCGACAACCTGATT 58.848 45.455 0.00 0.00 43.17 2.57
1384 1386 3.057806 GGGTTAAACCGACAACCTGATTG 60.058 47.826 0.00 0.00 43.17 2.67
1385 1387 5.523085 GGGTTAAACCGACAACCTGATTGT 61.523 45.833 0.00 0.00 44.29 2.71
1386 1388 7.498256 GGGTTAAACCGACAACCTGATTGTG 62.498 48.000 0.00 0.00 44.28 3.33
1395 1397 4.361451 CAACCTGATTGTGTGGCTATTC 57.639 45.455 0.00 0.00 33.20 1.75
1396 1398 4.012374 CAACCTGATTGTGTGGCTATTCT 58.988 43.478 0.00 0.00 33.20 2.40
1397 1399 3.614092 ACCTGATTGTGTGGCTATTCTG 58.386 45.455 0.00 0.00 0.00 3.02
1398 1400 3.264193 ACCTGATTGTGTGGCTATTCTGA 59.736 43.478 0.00 0.00 0.00 3.27
1399 1401 4.263462 ACCTGATTGTGTGGCTATTCTGAA 60.263 41.667 0.00 0.00 0.00 3.02
1400 1402 4.885907 CCTGATTGTGTGGCTATTCTGAAT 59.114 41.667 8.14 8.14 0.00 2.57
1401 1403 6.057533 CCTGATTGTGTGGCTATTCTGAATA 58.942 40.000 9.58 9.58 0.00 1.75
1402 1404 6.017605 CCTGATTGTGTGGCTATTCTGAATAC 60.018 42.308 6.01 0.57 0.00 1.89
1403 1405 6.413892 TGATTGTGTGGCTATTCTGAATACA 58.586 36.000 6.01 3.16 0.00 2.29
1404 1406 6.539826 TGATTGTGTGGCTATTCTGAATACAG 59.460 38.462 6.01 1.32 44.66 2.74
1419 1421 7.708051 TCTGAATACAGATAGAAAGTCTTCGG 58.292 38.462 0.00 0.00 46.55 4.30
1420 1422 7.339721 TCTGAATACAGATAGAAAGTCTTCGGT 59.660 37.037 0.00 0.00 46.55 4.69
1421 1423 7.481642 TGAATACAGATAGAAAGTCTTCGGTC 58.518 38.462 0.00 0.00 36.61 4.79
1422 1424 7.122204 TGAATACAGATAGAAAGTCTTCGGTCA 59.878 37.037 0.00 0.00 36.61 4.02
1423 1425 5.923733 ACAGATAGAAAGTCTTCGGTCAT 57.076 39.130 0.00 0.00 36.61 3.06
1424 1426 8.693120 ATACAGATAGAAAGTCTTCGGTCATA 57.307 34.615 0.00 0.00 36.61 2.15
1425 1427 7.589958 ACAGATAGAAAGTCTTCGGTCATAT 57.410 36.000 0.00 0.00 36.61 1.78
1426 1428 8.012957 ACAGATAGAAAGTCTTCGGTCATATT 57.987 34.615 0.00 0.00 36.61 1.28
1427 1429 7.923344 ACAGATAGAAAGTCTTCGGTCATATTG 59.077 37.037 0.00 0.00 36.61 1.90
1428 1430 7.383572 CAGATAGAAAGTCTTCGGTCATATTGG 59.616 40.741 0.00 0.00 36.61 3.16
1429 1431 5.677319 AGAAAGTCTTCGGTCATATTGGA 57.323 39.130 0.00 0.00 36.61 3.53
1430 1432 6.049955 AGAAAGTCTTCGGTCATATTGGAA 57.950 37.500 0.00 0.00 36.61 3.53
1431 1433 6.109359 AGAAAGTCTTCGGTCATATTGGAAG 58.891 40.000 0.00 0.00 36.61 3.46
1432 1434 3.798202 AGTCTTCGGTCATATTGGAAGC 58.202 45.455 0.00 0.00 36.66 3.86
1433 1435 3.452627 AGTCTTCGGTCATATTGGAAGCT 59.547 43.478 0.00 0.00 36.66 3.74
1434 1436 3.804873 GTCTTCGGTCATATTGGAAGCTC 59.195 47.826 0.00 0.00 36.66 4.09
1435 1437 3.450817 TCTTCGGTCATATTGGAAGCTCA 59.549 43.478 0.00 0.00 36.66 4.26
1436 1438 3.179443 TCGGTCATATTGGAAGCTCAC 57.821 47.619 0.00 0.00 0.00 3.51
1437 1439 2.766263 TCGGTCATATTGGAAGCTCACT 59.234 45.455 0.00 0.00 0.00 3.41
1438 1440 3.197766 TCGGTCATATTGGAAGCTCACTT 59.802 43.478 0.00 0.00 39.43 3.16
1448 1450 2.280628 GAAGCTCACTTCCGGTATTGG 58.719 52.381 0.00 0.00 45.60 3.16
1449 1451 0.107654 AGCTCACTTCCGGTATTGGC 60.108 55.000 0.00 2.70 0.00 4.52
1450 1452 1.429148 GCTCACTTCCGGTATTGGCG 61.429 60.000 0.00 0.00 0.00 5.69
1451 1453 0.810031 CTCACTTCCGGTATTGGCGG 60.810 60.000 0.00 0.00 0.00 6.13
1452 1454 1.817941 CACTTCCGGTATTGGCGGG 60.818 63.158 0.00 0.00 0.00 6.13
1453 1455 2.203153 CTTCCGGTATTGGCGGGG 60.203 66.667 0.00 0.00 0.00 5.73
1454 1456 3.767630 CTTCCGGTATTGGCGGGGG 62.768 68.421 0.00 0.00 0.00 5.40
1464 1466 3.784719 GGCGGGGGCAATTGCAAT 61.785 61.111 30.32 5.99 44.36 3.56
1465 1467 2.512057 GCGGGGGCAATTGCAATG 60.512 61.111 30.32 17.65 44.36 2.82
1466 1468 2.980475 CGGGGGCAATTGCAATGT 59.020 55.556 30.32 0.32 44.36 2.71
1467 1469 1.296068 CGGGGGCAATTGCAATGTT 59.704 52.632 30.32 0.00 44.36 2.71
1468 1470 0.534412 CGGGGGCAATTGCAATGTTA 59.466 50.000 30.32 0.00 44.36 2.41
1469 1471 1.138661 CGGGGGCAATTGCAATGTTAT 59.861 47.619 30.32 0.00 44.36 1.89
1470 1472 2.419851 CGGGGGCAATTGCAATGTTATT 60.420 45.455 30.32 0.00 44.36 1.40
1471 1473 3.181471 CGGGGGCAATTGCAATGTTATTA 60.181 43.478 30.32 0.00 44.36 0.98
1472 1474 4.681781 CGGGGGCAATTGCAATGTTATTAA 60.682 41.667 30.32 0.00 44.36 1.40
1473 1475 4.574421 GGGGGCAATTGCAATGTTATTAAC 59.426 41.667 30.32 9.30 44.36 2.01
1474 1476 4.574421 GGGGCAATTGCAATGTTATTAACC 59.426 41.667 30.32 17.14 44.36 2.85
1475 1477 4.269844 GGGCAATTGCAATGTTATTAACCG 59.730 41.667 30.32 0.00 44.36 4.44
1476 1478 5.105752 GGCAATTGCAATGTTATTAACCGA 58.894 37.500 30.32 0.00 44.36 4.69
1477 1479 5.752955 GGCAATTGCAATGTTATTAACCGAT 59.247 36.000 30.32 0.00 44.36 4.18
1478 1480 6.074356 GGCAATTGCAATGTTATTAACCGATC 60.074 38.462 30.32 3.97 44.36 3.69
1479 1481 6.344936 GCAATTGCAATGTTATTAACCGATCG 60.345 38.462 25.36 8.51 41.59 3.69
1480 1482 6.612247 ATTGCAATGTTATTAACCGATCGA 57.388 33.333 18.66 0.00 0.00 3.59
1481 1483 6.424176 TTGCAATGTTATTAACCGATCGAA 57.576 33.333 18.66 3.01 0.00 3.71
1482 1484 6.424176 TGCAATGTTATTAACCGATCGAAA 57.576 33.333 18.66 8.31 0.00 3.46
1483 1485 6.252281 TGCAATGTTATTAACCGATCGAAAC 58.748 36.000 18.66 10.78 0.00 2.78
1484 1486 6.092944 TGCAATGTTATTAACCGATCGAAACT 59.907 34.615 18.66 0.00 0.00 2.66
1485 1487 6.964934 GCAATGTTATTAACCGATCGAAACTT 59.035 34.615 18.66 4.70 0.00 2.66
1486 1488 7.483691 GCAATGTTATTAACCGATCGAAACTTT 59.516 33.333 18.66 11.24 0.00 2.66
1487 1489 9.976255 CAATGTTATTAACCGATCGAAACTTTA 57.024 29.630 18.66 3.09 0.00 1.85
1495 1497 7.662604 AACCGATCGAAACTTTAATACAAGT 57.337 32.000 18.66 0.00 38.74 3.16
1496 1498 7.662604 ACCGATCGAAACTTTAATACAAGTT 57.337 32.000 18.66 0.00 46.85 2.66
1523 1525 3.970410 CTGCAGGAGGCCACCCAA 61.970 66.667 16.55 0.56 43.89 4.12
1524 1526 3.933048 CTGCAGGAGGCCACCCAAG 62.933 68.421 16.55 7.28 43.89 3.61
1525 1527 4.748144 GCAGGAGGCCACCCAAGG 62.748 72.222 16.55 4.56 36.11 3.61
1526 1528 4.052518 CAGGAGGCCACCCAAGGG 62.053 72.222 16.55 2.91 42.03 3.95
1538 1540 3.266240 CCAAGGGGAGTTTAGGTGC 57.734 57.895 0.00 0.00 35.59 5.01
1539 1541 0.676782 CCAAGGGGAGTTTAGGTGCG 60.677 60.000 0.00 0.00 35.59 5.34
1540 1542 0.323629 CAAGGGGAGTTTAGGTGCGA 59.676 55.000 0.00 0.00 0.00 5.10
1541 1543 0.323957 AAGGGGAGTTTAGGTGCGAC 59.676 55.000 0.00 0.00 0.00 5.19
1542 1544 1.447314 GGGGAGTTTAGGTGCGACG 60.447 63.158 0.00 0.00 0.00 5.12
1543 1545 1.291272 GGGAGTTTAGGTGCGACGT 59.709 57.895 0.00 0.00 0.00 4.34
1544 1546 0.320160 GGGAGTTTAGGTGCGACGTT 60.320 55.000 0.00 0.00 0.00 3.99
1545 1547 1.505425 GGAGTTTAGGTGCGACGTTT 58.495 50.000 0.00 0.00 0.00 3.60
1546 1548 1.458445 GGAGTTTAGGTGCGACGTTTC 59.542 52.381 0.00 0.00 0.00 2.78
1547 1549 1.458445 GAGTTTAGGTGCGACGTTTCC 59.542 52.381 0.00 0.00 0.00 3.13
1548 1550 1.202557 AGTTTAGGTGCGACGTTTCCA 60.203 47.619 0.00 0.00 0.00 3.53
1549 1551 1.802365 GTTTAGGTGCGACGTTTCCAT 59.198 47.619 0.00 0.00 0.00 3.41
1550 1552 1.434555 TTAGGTGCGACGTTTCCATG 58.565 50.000 0.00 0.00 0.00 3.66
1551 1553 1.017177 TAGGTGCGACGTTTCCATGC 61.017 55.000 0.00 0.00 0.00 4.06
1552 1554 2.612567 GGTGCGACGTTTCCATGCA 61.613 57.895 0.00 0.00 0.00 3.96
1553 1555 2.942879 TGCGACGTTTCCATGCAC 59.057 55.556 0.00 0.00 0.00 4.57
1554 1556 2.202171 GCGACGTTTCCATGCACG 60.202 61.111 8.32 8.32 42.29 5.34
1558 1560 4.513275 CGTTTCCATGCACGTGTG 57.487 55.556 18.38 8.35 0.00 3.82
1568 1570 4.026226 CACGTGTGCTGTGCTACA 57.974 55.556 7.58 0.00 0.00 2.74
1569 1571 1.564622 CACGTGTGCTGTGCTACAC 59.435 57.895 7.58 12.00 42.77 2.90
1570 1572 0.875908 CACGTGTGCTGTGCTACACT 60.876 55.000 7.58 7.15 43.73 3.55
1571 1573 0.671796 ACGTGTGCTGTGCTACACTA 59.328 50.000 16.54 0.00 43.73 2.74
1572 1574 1.060713 CGTGTGCTGTGCTACACTAC 58.939 55.000 16.54 0.00 43.73 2.73
1573 1575 1.335964 CGTGTGCTGTGCTACACTACT 60.336 52.381 16.54 0.00 43.73 2.57
1574 1576 2.061773 GTGTGCTGTGCTACACTACTG 58.938 52.381 13.65 0.00 42.86 2.74
1575 1577 1.686587 TGTGCTGTGCTACACTACTGT 59.313 47.619 0.00 0.00 37.68 3.55
1576 1578 2.888414 TGTGCTGTGCTACACTACTGTA 59.112 45.455 0.00 0.00 37.68 2.74
1577 1579 3.509967 TGTGCTGTGCTACACTACTGTAT 59.490 43.478 0.00 0.00 37.68 2.29
1578 1580 4.703093 TGTGCTGTGCTACACTACTGTATA 59.297 41.667 0.00 0.00 37.68 1.47
1579 1581 5.163652 TGTGCTGTGCTACACTACTGTATAG 60.164 44.000 0.00 0.00 37.68 1.31
1580 1582 4.948004 TGCTGTGCTACACTACTGTATAGT 59.052 41.667 0.00 0.00 35.21 2.12
1582 1584 5.733655 GCTGTGCTACACTACTGTATAGTGG 60.734 48.000 16.30 1.55 46.70 4.00
1583 1585 5.503002 TGTGCTACACTACTGTATAGTGGA 58.497 41.667 16.30 8.59 46.70 4.02
1584 1586 5.356190 TGTGCTACACTACTGTATAGTGGAC 59.644 44.000 16.30 0.66 46.70 4.02
1585 1587 5.589452 GTGCTACACTACTGTATAGTGGACT 59.411 44.000 16.30 1.23 46.70 3.85
1586 1588 5.589050 TGCTACACTACTGTATAGTGGACTG 59.411 44.000 16.30 1.53 46.70 3.51
1587 1589 5.008811 GCTACACTACTGTATAGTGGACTGG 59.991 48.000 16.30 0.68 46.70 4.00
1588 1590 3.700038 ACACTACTGTATAGTGGACTGGC 59.300 47.826 16.30 0.00 46.70 4.85
1589 1591 3.954904 CACTACTGTATAGTGGACTGGCT 59.045 47.826 9.97 0.00 40.76 4.75
1590 1592 3.954904 ACTACTGTATAGTGGACTGGCTG 59.045 47.826 9.97 0.00 37.58 4.85
1591 1593 2.111384 ACTGTATAGTGGACTGGCTGG 58.889 52.381 0.00 0.00 35.34 4.85
1592 1594 2.111384 CTGTATAGTGGACTGGCTGGT 58.889 52.381 0.00 0.00 0.00 4.00
1593 1595 1.831106 TGTATAGTGGACTGGCTGGTG 59.169 52.381 0.00 0.00 0.00 4.17
1594 1596 1.831736 GTATAGTGGACTGGCTGGTGT 59.168 52.381 0.00 0.00 0.00 4.16
1595 1597 2.247699 ATAGTGGACTGGCTGGTGTA 57.752 50.000 0.00 0.00 0.00 2.90
1596 1598 2.018355 TAGTGGACTGGCTGGTGTAA 57.982 50.000 0.00 0.00 0.00 2.41
1597 1599 0.396811 AGTGGACTGGCTGGTGTAAC 59.603 55.000 0.00 0.00 0.00 2.50
1598 1600 0.949105 GTGGACTGGCTGGTGTAACG 60.949 60.000 0.00 0.00 38.12 3.18
1599 1601 1.370064 GGACTGGCTGGTGTAACGT 59.630 57.895 0.00 0.00 38.12 3.99
1600 1602 0.669625 GGACTGGCTGGTGTAACGTC 60.670 60.000 0.00 0.00 38.12 4.34
1601 1603 0.317479 GACTGGCTGGTGTAACGTCT 59.683 55.000 0.00 0.00 38.12 4.18
1602 1604 0.317479 ACTGGCTGGTGTAACGTCTC 59.683 55.000 0.00 0.00 38.12 3.36
1603 1605 0.389948 CTGGCTGGTGTAACGTCTCC 60.390 60.000 0.00 0.00 38.12 3.71
1604 1606 1.116536 TGGCTGGTGTAACGTCTCCA 61.117 55.000 0.00 0.00 38.12 3.86
1605 1607 0.389948 GGCTGGTGTAACGTCTCCAG 60.390 60.000 16.87 16.87 45.95 3.86
1606 1608 3.123674 CTGGTGTAACGTCTCCAGC 57.876 57.895 11.14 7.98 40.52 4.85
1607 1609 0.317160 CTGGTGTAACGTCTCCAGCA 59.683 55.000 11.14 11.43 40.52 4.41
1608 1610 0.317160 TGGTGTAACGTCTCCAGCAG 59.683 55.000 9.11 0.00 38.12 4.24
1609 1611 0.601558 GGTGTAACGTCTCCAGCAGA 59.398 55.000 0.00 0.00 38.12 4.26
1610 1612 1.402984 GGTGTAACGTCTCCAGCAGAG 60.403 57.143 0.00 0.00 40.56 3.35
1611 1613 3.714844 GGTGTAACGTCTCCAGCAGAGA 61.715 54.545 2.53 2.53 44.16 3.10
1620 1622 2.411904 CTCCAGCAGAGAATAATCGCC 58.588 52.381 0.00 0.00 46.50 5.54
1621 1623 1.070758 TCCAGCAGAGAATAATCGCCC 59.929 52.381 0.00 0.00 0.00 6.13
1622 1624 1.143305 CAGCAGAGAATAATCGCCCG 58.857 55.000 0.00 0.00 0.00 6.13
1623 1625 1.040646 AGCAGAGAATAATCGCCCGA 58.959 50.000 0.00 0.00 0.00 5.14
1624 1626 1.412710 AGCAGAGAATAATCGCCCGAA 59.587 47.619 0.00 0.00 0.00 4.30
1625 1627 1.527311 GCAGAGAATAATCGCCCGAAC 59.473 52.381 0.00 0.00 0.00 3.95
1626 1628 2.821546 CAGAGAATAATCGCCCGAACA 58.178 47.619 0.00 0.00 0.00 3.18
1627 1629 3.194861 CAGAGAATAATCGCCCGAACAA 58.805 45.455 0.00 0.00 0.00 2.83
1628 1630 3.809832 CAGAGAATAATCGCCCGAACAAT 59.190 43.478 0.00 0.00 0.00 2.71
1629 1631 4.273480 CAGAGAATAATCGCCCGAACAATT 59.727 41.667 0.00 0.00 0.00 2.32
1630 1632 5.465390 CAGAGAATAATCGCCCGAACAATTA 59.535 40.000 0.00 0.00 0.00 1.40
1631 1633 5.465724 AGAGAATAATCGCCCGAACAATTAC 59.534 40.000 0.00 0.00 0.00 1.89
1632 1634 5.120399 AGAATAATCGCCCGAACAATTACA 58.880 37.500 0.00 0.00 0.00 2.41
1633 1635 5.763204 AGAATAATCGCCCGAACAATTACAT 59.237 36.000 0.00 0.00 0.00 2.29
1634 1636 6.932400 AGAATAATCGCCCGAACAATTACATA 59.068 34.615 0.00 0.00 0.00 2.29
1635 1637 6.721571 ATAATCGCCCGAACAATTACATAG 57.278 37.500 0.00 0.00 0.00 2.23
1636 1638 3.804786 TCGCCCGAACAATTACATAGA 57.195 42.857 0.00 0.00 0.00 1.98
1637 1639 3.450578 TCGCCCGAACAATTACATAGAC 58.549 45.455 0.00 0.00 0.00 2.59
1638 1640 3.131577 TCGCCCGAACAATTACATAGACT 59.868 43.478 0.00 0.00 0.00 3.24
1639 1641 4.338964 TCGCCCGAACAATTACATAGACTA 59.661 41.667 0.00 0.00 0.00 2.59
1640 1642 4.680110 CGCCCGAACAATTACATAGACTAG 59.320 45.833 0.00 0.00 0.00 2.57
1641 1643 4.448060 GCCCGAACAATTACATAGACTAGC 59.552 45.833 0.00 0.00 0.00 3.42
1642 1644 5.739358 GCCCGAACAATTACATAGACTAGCT 60.739 44.000 0.00 0.00 0.00 3.32
1643 1645 5.921408 CCCGAACAATTACATAGACTAGCTC 59.079 44.000 0.00 0.00 0.00 4.09
1644 1646 6.461092 CCCGAACAATTACATAGACTAGCTCA 60.461 42.308 0.00 0.00 0.00 4.26
1645 1647 6.418226 CCGAACAATTACATAGACTAGCTCAC 59.582 42.308 0.00 0.00 0.00 3.51
1646 1648 7.197017 CGAACAATTACATAGACTAGCTCACT 58.803 38.462 0.00 0.00 0.00 3.41
1647 1649 8.343366 CGAACAATTACATAGACTAGCTCACTA 58.657 37.037 0.00 0.00 0.00 2.74
1661 1663 2.886081 CTCACTAGCAGTAGTTGGCAG 58.114 52.381 0.00 0.00 37.40 4.85
1662 1664 2.232452 CTCACTAGCAGTAGTTGGCAGT 59.768 50.000 0.00 0.00 37.40 4.40
1663 1665 2.029020 TCACTAGCAGTAGTTGGCAGTG 60.029 50.000 0.00 0.00 37.40 3.66
1664 1666 1.971357 ACTAGCAGTAGTTGGCAGTGT 59.029 47.619 0.00 0.00 35.88 3.55
1665 1667 2.289072 ACTAGCAGTAGTTGGCAGTGTG 60.289 50.000 0.00 0.00 35.88 3.82
1666 1668 0.886490 AGCAGTAGTTGGCAGTGTGC 60.886 55.000 0.00 0.00 44.08 4.57
1716 1718 3.888930 ACTTGATGGTTCATTTGTTCCGT 59.111 39.130 0.00 0.00 0.00 4.69
1717 1719 5.067273 ACTTGATGGTTCATTTGTTCCGTA 58.933 37.500 0.00 0.00 0.00 4.02
1725 1727 7.987649 TGGTTCATTTGTTCCGTATATAAACC 58.012 34.615 0.00 0.00 33.55 3.27
1745 1747 1.523758 CCTTACAGGCACACTCCAAC 58.476 55.000 0.00 0.00 0.00 3.77
1761 1763 5.924254 CACTCCAACTAACATTTGTCTCGTA 59.076 40.000 0.00 0.00 0.00 3.43
1762 1764 5.924825 ACTCCAACTAACATTTGTCTCGTAC 59.075 40.000 0.00 0.00 0.00 3.67
1773 1775 2.698803 TGTCTCGTACGTAGCCACTTA 58.301 47.619 16.05 0.00 0.00 2.24
1786 1788 2.556622 AGCCACTTAAAATCCGTTGGTG 59.443 45.455 0.00 0.00 0.00 4.17
1791 1793 1.828979 TAAAATCCGTTGGTGCTCCC 58.171 50.000 1.59 0.00 0.00 4.30
1817 1819 2.870372 GCTCCTGCACGCGAAAAT 59.130 55.556 15.93 0.00 39.41 1.82
1818 1820 1.210155 GCTCCTGCACGCGAAAATT 59.790 52.632 15.93 0.00 39.41 1.82
1819 1821 1.067199 GCTCCTGCACGCGAAAATTG 61.067 55.000 15.93 0.00 39.41 2.32
1820 1822 0.238289 CTCCTGCACGCGAAAATTGT 59.762 50.000 15.93 0.00 0.00 2.71
1821 1823 1.463056 CTCCTGCACGCGAAAATTGTA 59.537 47.619 15.93 0.00 0.00 2.41
1822 1824 2.080693 TCCTGCACGCGAAAATTGTAT 58.919 42.857 15.93 0.00 0.00 2.29
1825 1827 3.300590 CCTGCACGCGAAAATTGTATTTC 59.699 43.478 15.93 0.00 36.24 2.17
1833 1835 5.778345 CGCGAAAATTGTATTTCAAAAGTGC 59.222 36.000 0.00 0.00 38.87 4.40
1884 1887 6.506984 CGCATACATCTCGACATTATATGTGC 60.507 42.308 0.00 0.00 45.03 4.57
1885 1888 6.311200 GCATACATCTCGACATTATATGTGCA 59.689 38.462 0.00 0.00 45.03 4.57
1888 1891 5.463392 ACATCTCGACATTATATGTGCACAC 59.537 40.000 24.37 5.66 45.03 3.82
1894 1897 5.469373 ACATTATATGTGCACACGTCAAG 57.531 39.130 24.37 13.64 43.01 3.02
1899 1902 1.443802 TGTGCACACGTCAAGTTTCA 58.556 45.000 17.42 0.00 0.00 2.69
1962 1965 9.677567 GATAAAAGTATGTCTTGTGAAAAGCAA 57.322 29.630 0.00 0.00 36.40 3.91
1970 1973 8.715191 ATGTCTTGTGAAAAGCAATTTTAACA 57.285 26.923 0.46 0.46 0.00 2.41
1971 1974 8.715191 TGTCTTGTGAAAAGCAATTTTAACAT 57.285 26.923 4.84 0.00 31.76 2.71
1975 1978 6.507900 TGTGAAAAGCAATTTTAACATCCGA 58.492 32.000 0.46 0.00 0.00 4.55
1985 1988 8.162245 GCAATTTTAACATCCGATTTTGTCTTC 58.838 33.333 0.00 0.00 0.00 2.87
2002 2010 5.534407 TGTCTTCTTCACACGCATAAGTTA 58.466 37.500 0.00 0.00 0.00 2.24
2005 2013 6.310467 GTCTTCTTCACACGCATAAGTTATCA 59.690 38.462 0.00 0.00 0.00 2.15
2011 2019 6.827641 TCACACGCATAAGTTATCAGTTTTC 58.172 36.000 0.00 0.00 0.00 2.29
2012 2020 5.728049 CACACGCATAAGTTATCAGTTTTCG 59.272 40.000 0.00 0.00 0.00 3.46
2013 2021 4.723862 CACGCATAAGTTATCAGTTTTCGC 59.276 41.667 0.00 0.00 0.00 4.70
2014 2022 3.953853 CGCATAAGTTATCAGTTTTCGCG 59.046 43.478 0.00 0.00 0.00 5.87
2015 2023 4.259650 CGCATAAGTTATCAGTTTTCGCGA 60.260 41.667 3.71 3.71 40.16 5.87
2016 2024 5.556470 GCATAAGTTATCAGTTTTCGCGAA 58.444 37.500 19.38 19.38 0.00 4.70
2017 2025 6.019152 GCATAAGTTATCAGTTTTCGCGAAA 58.981 36.000 29.22 29.22 0.00 3.46
2018 2026 6.022484 GCATAAGTTATCAGTTTTCGCGAAAC 60.022 38.462 32.32 24.91 46.42 2.78
2031 2039 2.031037 GCGAAACGATTTTGTGAGCA 57.969 45.000 0.00 0.00 0.00 4.26
2040 2048 6.735678 ACGATTTTGTGAGCATGTACAATA 57.264 33.333 0.00 8.38 36.75 1.90
2042 2050 7.409697 ACGATTTTGTGAGCATGTACAATATC 58.590 34.615 19.93 19.93 39.60 1.63
2045 2053 6.588348 TTTGTGAGCATGTACAATATCGAG 57.412 37.500 0.00 0.00 36.75 4.04
2055 2063 2.316792 ACAATATCGAGATGTACGCGC 58.683 47.619 5.73 0.00 41.27 6.86
2069 2077 2.563471 ACGCGCCAAGTTTTTGTTTA 57.437 40.000 5.73 0.00 32.21 2.01
2070 2078 2.186891 ACGCGCCAAGTTTTTGTTTAC 58.813 42.857 5.73 0.00 32.21 2.01
2073 2081 3.060895 CGCGCCAAGTTTTTGTTTACAAA 59.939 39.130 0.00 4.02 43.36 2.83
2079 2087 9.543018 CGCCAAGTTTTTGTTTACAAATTTTTA 57.457 25.926 8.70 0.00 44.30 1.52
2124 2132 9.796120 TCAAACACATTTTAAAAACTAGGAGTG 57.204 29.630 4.44 7.82 0.00 3.51
2125 2133 8.539674 CAAACACATTTTAAAAACTAGGAGTGC 58.460 33.333 4.44 0.00 0.00 4.40
2126 2134 6.435428 ACACATTTTAAAAACTAGGAGTGCG 58.565 36.000 4.44 0.00 0.00 5.34
2127 2135 6.038936 ACACATTTTAAAAACTAGGAGTGCGT 59.961 34.615 4.44 0.00 0.00 5.24
2138 2146 1.672356 GAGTGCGTGCTCCCATGTT 60.672 57.895 0.00 0.00 0.00 2.71
2159 2167 2.507886 TCCAAAACACCACTCTCCTTGA 59.492 45.455 0.00 0.00 0.00 3.02
2169 2177 1.000283 ACTCTCCTTGAACTGTCGCTG 60.000 52.381 0.00 0.00 0.00 5.18
2172 2180 0.880278 TCCTTGAACTGTCGCTGCAC 60.880 55.000 0.00 0.00 0.00 4.57
2211 2219 0.110373 CGTCTTTTTCTTTCCGCCGG 60.110 55.000 0.00 0.00 0.00 6.13
2231 2239 2.159170 GGTCGGAATTGTCTCTCTCTGG 60.159 54.545 0.00 0.00 0.00 3.86
2234 2242 2.757868 CGGAATTGTCTCTCTCTGGTCT 59.242 50.000 0.00 0.00 0.00 3.85
2235 2243 3.181491 CGGAATTGTCTCTCTCTGGTCTC 60.181 52.174 0.00 0.00 0.00 3.36
2236 2244 4.023291 GGAATTGTCTCTCTCTGGTCTCT 58.977 47.826 0.00 0.00 0.00 3.10
2237 2245 4.142182 GGAATTGTCTCTCTCTGGTCTCTG 60.142 50.000 0.00 0.00 0.00 3.35
2238 2246 1.832883 TGTCTCTCTCTGGTCTCTGC 58.167 55.000 0.00 0.00 0.00 4.26
2239 2247 1.354031 TGTCTCTCTCTGGTCTCTGCT 59.646 52.381 0.00 0.00 0.00 4.24
2282 2290 0.682292 TCCAGTCAATGTGCGTACCA 59.318 50.000 0.00 0.00 0.00 3.25
2312 2320 1.405526 GGATCAACCACAGCTAAGCGA 60.406 52.381 0.00 0.00 38.79 4.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
108 109 3.744940 ATGAAGTCCACATCCATTGGT 57.255 42.857 1.86 0.00 35.42 3.67
150 151 0.799534 CGAAATCCTCGCGGTTACGT 60.800 55.000 6.13 0.00 41.49 3.57
183 184 4.229582 ACTGAGAATAGACCAGACCTCTCT 59.770 45.833 0.00 0.00 32.36 3.10
235 236 7.362834 CCCATTGGCAAAAGCGATATTATGATA 60.363 37.037 3.01 0.00 0.00 2.15
240 241 3.957497 ACCCATTGGCAAAAGCGATATTA 59.043 39.130 3.01 0.00 33.59 0.98
753 755 3.689649 CCGAGGACATTTTACCTTTGAGG 59.310 47.826 0.00 0.00 42.49 3.86
904 906 0.454600 TCGCGGTTCCTGAGTATCAC 59.545 55.000 6.13 0.00 42.56 3.06
929 931 0.749454 ATAAGCTGCAAAGAGGGCGG 60.749 55.000 1.02 0.00 40.63 6.13
931 933 3.199880 TCTATAAGCTGCAAAGAGGGC 57.800 47.619 1.02 0.00 0.00 5.19
932 934 9.678260 AAATATATCTATAAGCTGCAAAGAGGG 57.322 33.333 1.02 0.00 0.00 4.30
955 957 1.339929 GGGGTCGTTGCAGTGAAAAAT 59.660 47.619 0.00 0.00 0.00 1.82
1036 1038 0.546598 GATTGAAGGATCACCGGGGT 59.453 55.000 2.12 0.00 41.83 4.95
1352 1354 5.774630 TGTCGGTTTAACCCAAAATTGATC 58.225 37.500 8.72 0.00 33.75 2.92
1353 1355 5.793030 TGTCGGTTTAACCCAAAATTGAT 57.207 34.783 8.72 0.00 33.75 2.57
1354 1356 5.349809 GTTGTCGGTTTAACCCAAAATTGA 58.650 37.500 8.72 0.00 33.75 2.57
1355 1357 4.508492 GGTTGTCGGTTTAACCCAAAATTG 59.492 41.667 8.72 0.00 40.31 2.32
1356 1358 4.406326 AGGTTGTCGGTTTAACCCAAAATT 59.594 37.500 8.72 0.00 45.88 1.82
1357 1359 3.962063 AGGTTGTCGGTTTAACCCAAAAT 59.038 39.130 8.72 0.00 45.88 1.82
1358 1360 3.130693 CAGGTTGTCGGTTTAACCCAAAA 59.869 43.478 8.72 0.00 45.88 2.44
1359 1361 2.688958 CAGGTTGTCGGTTTAACCCAAA 59.311 45.455 8.72 0.00 45.88 3.28
1360 1362 2.092538 TCAGGTTGTCGGTTTAACCCAA 60.093 45.455 8.72 5.20 45.88 4.12
1361 1363 1.489649 TCAGGTTGTCGGTTTAACCCA 59.510 47.619 8.72 0.00 45.88 4.51
1362 1364 2.259266 TCAGGTTGTCGGTTTAACCC 57.741 50.000 8.72 0.00 45.88 4.11
1363 1365 4.155310 CAATCAGGTTGTCGGTTTAACC 57.845 45.455 3.64 3.64 45.24 2.85
1374 1376 4.012374 AGAATAGCCACACAATCAGGTTG 58.988 43.478 0.00 0.00 43.64 3.77
1375 1377 4.012374 CAGAATAGCCACACAATCAGGTT 58.988 43.478 0.00 0.00 0.00 3.50
1376 1378 3.264193 TCAGAATAGCCACACAATCAGGT 59.736 43.478 0.00 0.00 0.00 4.00
1377 1379 3.877559 TCAGAATAGCCACACAATCAGG 58.122 45.455 0.00 0.00 0.00 3.86
1378 1380 6.539826 TGTATTCAGAATAGCCACACAATCAG 59.460 38.462 2.83 0.00 0.00 2.90
1379 1381 6.413892 TGTATTCAGAATAGCCACACAATCA 58.586 36.000 2.83 0.00 0.00 2.57
1380 1382 6.763135 TCTGTATTCAGAATAGCCACACAATC 59.237 38.462 2.83 0.00 46.17 2.67
1381 1383 6.653020 TCTGTATTCAGAATAGCCACACAAT 58.347 36.000 2.83 0.00 46.17 2.71
1382 1384 6.048732 TCTGTATTCAGAATAGCCACACAA 57.951 37.500 2.83 0.00 46.17 3.33
1383 1385 5.675684 TCTGTATTCAGAATAGCCACACA 57.324 39.130 2.83 0.00 46.17 3.72
1395 1397 7.484975 ACCGAAGACTTTCTATCTGTATTCAG 58.515 38.462 0.00 0.00 42.54 3.02
1396 1398 7.122204 TGACCGAAGACTTTCTATCTGTATTCA 59.878 37.037 0.00 0.00 33.23 2.57
1397 1399 7.481642 TGACCGAAGACTTTCTATCTGTATTC 58.518 38.462 0.00 0.00 0.00 1.75
1398 1400 7.406031 TGACCGAAGACTTTCTATCTGTATT 57.594 36.000 0.00 0.00 0.00 1.89
1399 1401 7.589958 ATGACCGAAGACTTTCTATCTGTAT 57.410 36.000 0.00 0.00 0.00 2.29
1400 1402 8.693120 ATATGACCGAAGACTTTCTATCTGTA 57.307 34.615 0.00 0.00 0.00 2.74
1401 1403 5.923733 ATGACCGAAGACTTTCTATCTGT 57.076 39.130 0.00 0.00 0.00 3.41
1402 1404 7.383572 CCAATATGACCGAAGACTTTCTATCTG 59.616 40.741 0.00 0.00 0.00 2.90
1403 1405 7.287927 TCCAATATGACCGAAGACTTTCTATCT 59.712 37.037 0.00 0.00 0.00 1.98
1404 1406 7.434492 TCCAATATGACCGAAGACTTTCTATC 58.566 38.462 0.00 0.00 0.00 2.08
1405 1407 7.361457 TCCAATATGACCGAAGACTTTCTAT 57.639 36.000 0.00 0.00 0.00 1.98
1406 1408 6.785337 TCCAATATGACCGAAGACTTTCTA 57.215 37.500 0.00 0.00 0.00 2.10
1407 1409 5.677319 TCCAATATGACCGAAGACTTTCT 57.323 39.130 0.00 0.00 0.00 2.52
1408 1410 5.220681 GCTTCCAATATGACCGAAGACTTTC 60.221 44.000 0.00 0.00 34.87 2.62
1409 1411 4.636206 GCTTCCAATATGACCGAAGACTTT 59.364 41.667 0.00 0.00 34.87 2.66
1410 1412 4.080863 AGCTTCCAATATGACCGAAGACTT 60.081 41.667 0.00 0.00 34.87 3.01
1411 1413 3.452627 AGCTTCCAATATGACCGAAGACT 59.547 43.478 0.00 0.00 34.87 3.24
1412 1414 3.798202 AGCTTCCAATATGACCGAAGAC 58.202 45.455 0.00 0.00 34.87 3.01
1413 1415 3.450817 TGAGCTTCCAATATGACCGAAGA 59.549 43.478 0.00 0.00 34.87 2.87
1414 1416 3.557595 GTGAGCTTCCAATATGACCGAAG 59.442 47.826 0.00 0.00 35.81 3.79
1415 1417 3.197766 AGTGAGCTTCCAATATGACCGAA 59.802 43.478 0.00 0.00 0.00 4.30
1416 1418 2.766263 AGTGAGCTTCCAATATGACCGA 59.234 45.455 0.00 0.00 0.00 4.69
1417 1419 3.185246 AGTGAGCTTCCAATATGACCG 57.815 47.619 0.00 0.00 0.00 4.79
1429 1431 1.679032 GCCAATACCGGAAGTGAGCTT 60.679 52.381 9.46 0.00 37.71 3.74
1430 1432 0.107654 GCCAATACCGGAAGTGAGCT 60.108 55.000 9.46 0.00 0.00 4.09
1431 1433 1.429148 CGCCAATACCGGAAGTGAGC 61.429 60.000 9.46 2.38 0.00 4.26
1432 1434 2.677971 CGCCAATACCGGAAGTGAG 58.322 57.895 9.46 0.00 0.00 3.51
1433 1435 4.924019 CGCCAATACCGGAAGTGA 57.076 55.556 9.46 0.00 0.00 3.41
1440 1442 4.805768 TTGCCCCCGCCAATACCG 62.806 66.667 0.00 0.00 0.00 4.02
1441 1443 1.760480 AATTGCCCCCGCCAATACC 60.760 57.895 0.00 0.00 0.00 2.73
1442 1444 1.441311 CAATTGCCCCCGCCAATAC 59.559 57.895 0.00 0.00 0.00 1.89
1443 1445 2.430610 GCAATTGCCCCCGCCAATA 61.431 57.895 20.06 0.00 34.31 1.90
1444 1446 3.784719 GCAATTGCCCCCGCCAAT 61.785 61.111 20.06 0.00 34.31 3.16
1447 1449 3.784719 ATTGCAATTGCCCCCGCC 61.785 61.111 26.94 0.00 41.18 6.13
1448 1450 2.512057 CATTGCAATTGCCCCCGC 60.512 61.111 26.94 1.83 41.18 6.13
1449 1451 0.534412 TAACATTGCAATTGCCCCCG 59.466 50.000 26.94 14.98 41.18 5.73
1450 1452 3.280197 AATAACATTGCAATTGCCCCC 57.720 42.857 26.94 0.66 41.18 5.40
1451 1453 4.574421 GGTTAATAACATTGCAATTGCCCC 59.426 41.667 26.94 1.05 41.18 5.80
1452 1454 4.269844 CGGTTAATAACATTGCAATTGCCC 59.730 41.667 26.94 14.62 41.18 5.36
1453 1455 5.105752 TCGGTTAATAACATTGCAATTGCC 58.894 37.500 26.94 10.18 41.18 4.52
1454 1456 6.344936 CGATCGGTTAATAACATTGCAATTGC 60.345 38.462 23.69 23.69 42.50 3.56
1455 1457 6.909895 TCGATCGGTTAATAACATTGCAATTG 59.090 34.615 16.41 8.18 0.00 2.32
1456 1458 7.022055 TCGATCGGTTAATAACATTGCAATT 57.978 32.000 16.41 0.00 0.00 2.32
1457 1459 6.612247 TCGATCGGTTAATAACATTGCAAT 57.388 33.333 16.41 5.99 0.00 3.56
1458 1460 6.424176 TTCGATCGGTTAATAACATTGCAA 57.576 33.333 16.41 0.00 0.00 4.08
1459 1461 6.092944 AGTTTCGATCGGTTAATAACATTGCA 59.907 34.615 16.41 0.00 0.00 4.08
1460 1462 6.483687 AGTTTCGATCGGTTAATAACATTGC 58.516 36.000 16.41 0.00 0.00 3.56
1461 1463 8.889849 AAAGTTTCGATCGGTTAATAACATTG 57.110 30.769 16.41 0.00 0.00 2.82
1469 1471 9.206870 ACTTGTATTAAAGTTTCGATCGGTTAA 57.793 29.630 16.41 11.98 37.05 2.01
1470 1472 8.761575 ACTTGTATTAAAGTTTCGATCGGTTA 57.238 30.769 16.41 3.96 37.05 2.85
1471 1473 7.662604 ACTTGTATTAAAGTTTCGATCGGTT 57.337 32.000 16.41 4.89 37.05 4.44
1472 1474 7.662604 AACTTGTATTAAAGTTTCGATCGGT 57.337 32.000 16.41 0.00 45.84 4.69
1506 1508 3.933048 CTTGGGTGGCCTCCTGCAG 62.933 68.421 22.80 6.78 43.89 4.41
1507 1509 3.970410 CTTGGGTGGCCTCCTGCA 61.970 66.667 22.80 10.97 43.89 4.41
1508 1510 4.748144 CCTTGGGTGGCCTCCTGC 62.748 72.222 22.80 8.38 40.16 4.85
1509 1511 4.052518 CCCTTGGGTGGCCTCCTG 62.053 72.222 22.80 13.04 0.00 3.86
1512 1514 3.732849 CTCCCCTTGGGTGGCCTC 61.733 72.222 3.32 0.00 44.74 4.70
1513 1515 4.617595 ACTCCCCTTGGGTGGCCT 62.618 66.667 3.32 0.00 44.74 5.19
1514 1516 1.795951 TAAACTCCCCTTGGGTGGCC 61.796 60.000 0.00 0.00 44.74 5.36
1515 1517 0.323451 CTAAACTCCCCTTGGGTGGC 60.323 60.000 4.84 0.00 44.74 5.01
1516 1518 0.331616 CCTAAACTCCCCTTGGGTGG 59.668 60.000 4.84 0.00 44.74 4.61
1517 1519 1.073098 ACCTAAACTCCCCTTGGGTG 58.927 55.000 4.84 1.06 44.74 4.61
1518 1520 1.073098 CACCTAAACTCCCCTTGGGT 58.927 55.000 4.84 0.00 44.74 4.51
1519 1521 0.323451 GCACCTAAACTCCCCTTGGG 60.323 60.000 0.00 0.00 46.11 4.12
1520 1522 0.676782 CGCACCTAAACTCCCCTTGG 60.677 60.000 0.00 0.00 0.00 3.61
1521 1523 0.323629 TCGCACCTAAACTCCCCTTG 59.676 55.000 0.00 0.00 0.00 3.61
1522 1524 0.323957 GTCGCACCTAAACTCCCCTT 59.676 55.000 0.00 0.00 0.00 3.95
1523 1525 1.885163 CGTCGCACCTAAACTCCCCT 61.885 60.000 0.00 0.00 0.00 4.79
1524 1526 1.447314 CGTCGCACCTAAACTCCCC 60.447 63.158 0.00 0.00 0.00 4.81
1525 1527 0.320160 AACGTCGCACCTAAACTCCC 60.320 55.000 0.00 0.00 0.00 4.30
1526 1528 1.458445 GAAACGTCGCACCTAAACTCC 59.542 52.381 0.00 0.00 0.00 3.85
1527 1529 1.458445 GGAAACGTCGCACCTAAACTC 59.542 52.381 0.00 0.00 0.00 3.01
1528 1530 1.202557 TGGAAACGTCGCACCTAAACT 60.203 47.619 0.00 0.00 0.00 2.66
1529 1531 1.219646 TGGAAACGTCGCACCTAAAC 58.780 50.000 0.00 0.00 0.00 2.01
1530 1532 1.801771 CATGGAAACGTCGCACCTAAA 59.198 47.619 0.00 0.00 0.00 1.85
1531 1533 1.434555 CATGGAAACGTCGCACCTAA 58.565 50.000 0.00 0.00 0.00 2.69
1532 1534 1.017177 GCATGGAAACGTCGCACCTA 61.017 55.000 0.00 0.00 0.00 3.08
1533 1535 2.325082 GCATGGAAACGTCGCACCT 61.325 57.895 0.00 0.00 0.00 4.00
1534 1536 2.175811 GCATGGAAACGTCGCACC 59.824 61.111 0.00 0.00 0.00 5.01
1535 1537 1.440353 GTGCATGGAAACGTCGCAC 60.440 57.895 0.00 0.00 42.61 5.34
1536 1538 2.942879 GTGCATGGAAACGTCGCA 59.057 55.556 0.00 0.00 33.16 5.10
1537 1539 2.202171 CGTGCATGGAAACGTCGC 60.202 61.111 0.00 0.00 35.13 5.19
1541 1543 4.513275 CACACGTGCATGGAAACG 57.487 55.556 17.22 0.09 45.15 3.60
1551 1553 0.875908 AGTGTAGCACAGCACACGTG 60.876 55.000 15.48 15.48 41.57 4.49
1552 1554 0.671796 TAGTGTAGCACAGCACACGT 59.328 50.000 14.33 0.00 41.57 4.49
1553 1555 1.060713 GTAGTGTAGCACAGCACACG 58.939 55.000 14.33 0.00 41.57 4.49
1554 1556 2.061773 CAGTAGTGTAGCACAGCACAC 58.938 52.381 13.16 13.16 39.20 3.82
1555 1557 1.686587 ACAGTAGTGTAGCACAGCACA 59.313 47.619 0.00 0.00 36.74 4.57
1556 1558 2.440539 ACAGTAGTGTAGCACAGCAC 57.559 50.000 0.00 0.00 36.74 4.40
1557 1559 4.948004 ACTATACAGTAGTGTAGCACAGCA 59.052 41.667 15.39 0.00 42.53 4.41
1558 1560 5.274718 CACTATACAGTAGTGTAGCACAGC 58.725 45.833 15.39 0.00 42.53 4.40
1559 1561 5.589050 TCCACTATACAGTAGTGTAGCACAG 59.411 44.000 15.39 11.47 42.53 3.66
1560 1562 5.356190 GTCCACTATACAGTAGTGTAGCACA 59.644 44.000 15.39 0.00 42.53 4.57
1561 1563 5.589452 AGTCCACTATACAGTAGTGTAGCAC 59.411 44.000 15.39 6.13 42.53 4.40
1562 1564 5.589050 CAGTCCACTATACAGTAGTGTAGCA 59.411 44.000 15.39 5.77 42.53 3.49
1563 1565 5.008811 CCAGTCCACTATACAGTAGTGTAGC 59.991 48.000 15.39 4.49 42.53 3.58
1564 1566 5.008811 GCCAGTCCACTATACAGTAGTGTAG 59.991 48.000 15.39 7.62 42.53 2.74
1565 1567 4.885907 GCCAGTCCACTATACAGTAGTGTA 59.114 45.833 12.74 12.74 43.43 2.90
1566 1568 3.700038 GCCAGTCCACTATACAGTAGTGT 59.300 47.826 8.55 8.55 42.37 3.55
1567 1569 3.954904 AGCCAGTCCACTATACAGTAGTG 59.045 47.826 7.97 7.97 43.26 2.74
1568 1570 3.954904 CAGCCAGTCCACTATACAGTAGT 59.045 47.826 0.00 0.00 32.21 2.73
1569 1571 3.319405 CCAGCCAGTCCACTATACAGTAG 59.681 52.174 0.00 0.00 32.21 2.57
1570 1572 3.296854 CCAGCCAGTCCACTATACAGTA 58.703 50.000 0.00 0.00 32.21 2.74
1571 1573 2.111384 CCAGCCAGTCCACTATACAGT 58.889 52.381 0.00 0.00 34.42 3.55
1572 1574 2.111384 ACCAGCCAGTCCACTATACAG 58.889 52.381 0.00 0.00 0.00 2.74
1573 1575 1.831106 CACCAGCCAGTCCACTATACA 59.169 52.381 0.00 0.00 0.00 2.29
1574 1576 1.831736 ACACCAGCCAGTCCACTATAC 59.168 52.381 0.00 0.00 0.00 1.47
1575 1577 2.247699 ACACCAGCCAGTCCACTATA 57.752 50.000 0.00 0.00 0.00 1.31
1576 1578 2.236395 GTTACACCAGCCAGTCCACTAT 59.764 50.000 0.00 0.00 0.00 2.12
1577 1579 1.621814 GTTACACCAGCCAGTCCACTA 59.378 52.381 0.00 0.00 0.00 2.74
1578 1580 0.396811 GTTACACCAGCCAGTCCACT 59.603 55.000 0.00 0.00 0.00 4.00
1579 1581 0.949105 CGTTACACCAGCCAGTCCAC 60.949 60.000 0.00 0.00 0.00 4.02
1580 1582 1.369692 CGTTACACCAGCCAGTCCA 59.630 57.895 0.00 0.00 0.00 4.02
1581 1583 0.669625 GACGTTACACCAGCCAGTCC 60.670 60.000 0.00 0.00 0.00 3.85
1582 1584 0.317479 AGACGTTACACCAGCCAGTC 59.683 55.000 0.00 0.00 0.00 3.51
1583 1585 0.317479 GAGACGTTACACCAGCCAGT 59.683 55.000 0.00 0.00 0.00 4.00
1584 1586 0.389948 GGAGACGTTACACCAGCCAG 60.390 60.000 0.00 0.00 0.00 4.85
1585 1587 1.116536 TGGAGACGTTACACCAGCCA 61.117 55.000 0.00 0.00 0.00 4.75
1586 1588 0.389948 CTGGAGACGTTACACCAGCC 60.390 60.000 14.62 0.00 40.45 4.85
1587 1589 3.123674 CTGGAGACGTTACACCAGC 57.876 57.895 14.62 0.00 40.45 4.85
1588 1590 0.317160 TGCTGGAGACGTTACACCAG 59.683 55.000 19.44 19.44 46.26 4.00
1589 1591 0.317160 CTGCTGGAGACGTTACACCA 59.683 55.000 0.00 0.00 0.00 4.17
1590 1592 0.601558 TCTGCTGGAGACGTTACACC 59.398 55.000 0.00 0.00 0.00 4.16
1591 1593 1.540267 TCTCTGCTGGAGACGTTACAC 59.460 52.381 0.00 0.00 45.20 2.90
1592 1594 1.905637 TCTCTGCTGGAGACGTTACA 58.094 50.000 0.00 0.00 45.20 2.41
1600 1602 2.411904 GGCGATTATTCTCTGCTGGAG 58.588 52.381 0.00 0.00 43.12 3.86
1601 1603 1.070758 GGGCGATTATTCTCTGCTGGA 59.929 52.381 0.00 0.00 0.00 3.86
1602 1604 1.517242 GGGCGATTATTCTCTGCTGG 58.483 55.000 0.00 0.00 0.00 4.85
1603 1605 1.143305 CGGGCGATTATTCTCTGCTG 58.857 55.000 0.00 0.00 0.00 4.41
1604 1606 1.040646 TCGGGCGATTATTCTCTGCT 58.959 50.000 0.00 0.00 0.00 4.24
1605 1607 1.527311 GTTCGGGCGATTATTCTCTGC 59.473 52.381 0.00 0.00 0.00 4.26
1606 1608 2.821546 TGTTCGGGCGATTATTCTCTG 58.178 47.619 0.00 0.00 0.00 3.35
1607 1609 3.536956 TTGTTCGGGCGATTATTCTCT 57.463 42.857 0.00 0.00 0.00 3.10
1608 1610 4.813296 AATTGTTCGGGCGATTATTCTC 57.187 40.909 0.00 0.00 0.00 2.87
1609 1611 5.120399 TGTAATTGTTCGGGCGATTATTCT 58.880 37.500 0.00 0.00 30.19 2.40
1610 1612 5.412526 TGTAATTGTTCGGGCGATTATTC 57.587 39.130 0.00 0.00 30.19 1.75
1611 1613 6.932400 TCTATGTAATTGTTCGGGCGATTATT 59.068 34.615 0.00 0.00 30.19 1.40
1612 1614 6.367969 GTCTATGTAATTGTTCGGGCGATTAT 59.632 38.462 0.00 0.00 30.19 1.28
1613 1615 5.693104 GTCTATGTAATTGTTCGGGCGATTA 59.307 40.000 0.00 0.00 0.00 1.75
1614 1616 4.510340 GTCTATGTAATTGTTCGGGCGATT 59.490 41.667 0.00 0.00 0.00 3.34
1615 1617 4.056050 GTCTATGTAATTGTTCGGGCGAT 58.944 43.478 0.00 0.00 0.00 4.58
1616 1618 3.131577 AGTCTATGTAATTGTTCGGGCGA 59.868 43.478 0.00 0.00 0.00 5.54
1617 1619 3.454375 AGTCTATGTAATTGTTCGGGCG 58.546 45.455 0.00 0.00 0.00 6.13
1618 1620 4.448060 GCTAGTCTATGTAATTGTTCGGGC 59.552 45.833 0.00 0.00 0.00 6.13
1619 1621 5.844004 AGCTAGTCTATGTAATTGTTCGGG 58.156 41.667 0.00 0.00 0.00 5.14
1620 1622 6.418226 GTGAGCTAGTCTATGTAATTGTTCGG 59.582 42.308 0.00 0.00 0.00 4.30
1621 1623 7.197017 AGTGAGCTAGTCTATGTAATTGTTCG 58.803 38.462 0.00 0.00 0.00 3.95
1622 1624 9.672086 CTAGTGAGCTAGTCTATGTAATTGTTC 57.328 37.037 0.00 0.00 39.77 3.18
1623 1625 8.138712 GCTAGTGAGCTAGTCTATGTAATTGTT 58.861 37.037 0.00 0.00 45.98 2.83
1624 1626 7.653647 GCTAGTGAGCTAGTCTATGTAATTGT 58.346 38.462 0.00 0.00 45.98 2.71
1641 1643 2.232452 ACTGCCAACTACTGCTAGTGAG 59.768 50.000 0.00 0.00 33.14 3.51
1642 1644 2.029020 CACTGCCAACTACTGCTAGTGA 60.029 50.000 0.00 0.00 38.10 3.41
1643 1645 2.289072 ACACTGCCAACTACTGCTAGTG 60.289 50.000 0.00 0.00 39.89 2.74
1644 1646 1.971357 ACACTGCCAACTACTGCTAGT 59.029 47.619 0.00 0.00 34.38 2.57
1645 1647 2.341257 CACACTGCCAACTACTGCTAG 58.659 52.381 0.00 0.00 0.00 3.42
1646 1648 1.608025 GCACACTGCCAACTACTGCTA 60.608 52.381 0.00 0.00 37.42 3.49
1647 1649 0.886490 GCACACTGCCAACTACTGCT 60.886 55.000 0.00 0.00 37.42 4.24
1648 1650 1.576421 GCACACTGCCAACTACTGC 59.424 57.895 0.00 0.00 37.42 4.40
1661 1663 4.525182 GCAGTTCCTGTCAATGGCACAC 62.525 54.545 0.00 0.00 35.58 3.82
1662 1664 2.423628 GCAGTTCCTGTCAATGGCACA 61.424 52.381 0.00 0.00 36.81 4.57
1663 1665 0.242017 GCAGTTCCTGTCAATGGCAC 59.758 55.000 0.00 0.00 33.43 5.01
1664 1666 1.236616 CGCAGTTCCTGTCAATGGCA 61.237 55.000 0.00 0.00 33.43 4.92
1665 1667 0.955428 TCGCAGTTCCTGTCAATGGC 60.955 55.000 0.00 0.00 33.43 4.40
1666 1668 1.081892 CTCGCAGTTCCTGTCAATGG 58.918 55.000 0.00 0.00 33.43 3.16
1667 1669 1.800805 ACTCGCAGTTCCTGTCAATG 58.199 50.000 0.00 0.00 33.43 2.82
1668 1670 3.055819 ACATACTCGCAGTTCCTGTCAAT 60.056 43.478 0.00 0.00 33.43 2.57
1669 1671 2.299013 ACATACTCGCAGTTCCTGTCAA 59.701 45.455 0.00 0.00 33.43 3.18
1670 1672 1.893137 ACATACTCGCAGTTCCTGTCA 59.107 47.619 0.00 0.00 33.43 3.58
1671 1673 2.656560 ACATACTCGCAGTTCCTGTC 57.343 50.000 0.00 0.00 33.43 3.51
1672 1674 3.090037 ACTACATACTCGCAGTTCCTGT 58.910 45.455 0.00 0.00 33.43 4.00
1673 1675 3.784701 ACTACATACTCGCAGTTCCTG 57.215 47.619 0.00 0.00 34.12 3.86
1674 1676 4.525024 AGTACTACATACTCGCAGTTCCT 58.475 43.478 0.00 0.00 40.31 3.36
1745 1747 4.498323 GGCTACGTACGAGACAAATGTTAG 59.502 45.833 24.41 9.85 0.00 2.34
1761 1763 3.323751 ACGGATTTTAAGTGGCTACGT 57.676 42.857 0.00 0.00 0.00 3.57
1762 1764 3.181514 CCAACGGATTTTAAGTGGCTACG 60.182 47.826 0.00 0.00 0.00 3.51
1773 1775 1.241315 CGGGAGCACCAACGGATTTT 61.241 55.000 1.58 0.00 40.22 1.82
1807 1809 6.780496 CACTTTTGAAATACAATTTTCGCGTG 59.220 34.615 5.77 0.00 38.23 5.34
1811 1813 7.088097 TCGCACTTTTGAAATACAATTTTCG 57.912 32.000 0.00 0.00 38.23 3.46
1854 1857 0.387367 GTCGAGATGTATGCGCCGAT 60.387 55.000 4.18 0.00 0.00 4.18
1856 1859 0.664466 ATGTCGAGATGTATGCGCCG 60.664 55.000 4.18 0.00 0.00 6.46
1861 1864 7.329226 TGTGCACATATAATGTCGAGATGTATG 59.671 37.037 17.42 18.69 42.70 2.39
1884 1887 5.060446 GGTTTTCTTTGAAACTTGACGTGTG 59.940 40.000 0.00 0.00 39.05 3.82
1885 1888 5.158494 GGTTTTCTTTGAAACTTGACGTGT 58.842 37.500 0.00 0.00 39.05 4.49
1888 1891 4.494410 GTCGGTTTTCTTTGAAACTTGACG 59.506 41.667 0.00 0.00 39.05 4.35
1936 1939 9.677567 TTGCTTTTCACAAGACATACTTTTATC 57.322 29.630 0.00 0.00 36.61 1.75
1944 1947 9.809096 TGTTAAAATTGCTTTTCACAAGACATA 57.191 25.926 0.00 0.00 36.19 2.29
1947 1950 8.275632 GGATGTTAAAATTGCTTTTCACAAGAC 58.724 33.333 3.26 0.43 40.16 3.01
1953 1956 8.600449 AAATCGGATGTTAAAATTGCTTTTCA 57.400 26.923 0.00 0.00 36.09 2.69
1954 1957 9.316859 CAAAATCGGATGTTAAAATTGCTTTTC 57.683 29.630 0.00 0.00 36.09 2.29
1962 1965 9.626045 GAAGAAGACAAAATCGGATGTTAAAAT 57.374 29.630 0.00 0.00 0.00 1.82
1967 1970 5.530915 TGTGAAGAAGACAAAATCGGATGTT 59.469 36.000 0.00 0.00 0.00 2.71
1969 1972 5.385617 GTGTGAAGAAGACAAAATCGGATG 58.614 41.667 0.00 0.00 0.00 3.51
1970 1973 4.152402 CGTGTGAAGAAGACAAAATCGGAT 59.848 41.667 0.00 0.00 0.00 4.18
1971 1974 3.493129 CGTGTGAAGAAGACAAAATCGGA 59.507 43.478 0.00 0.00 0.00 4.55
1975 1978 4.836125 ATGCGTGTGAAGAAGACAAAAT 57.164 36.364 0.00 0.00 0.00 1.82
1985 1988 6.408858 AACTGATAACTTATGCGTGTGAAG 57.591 37.500 0.00 0.00 0.00 3.02
2011 2019 0.967803 GCTCACAAAATCGTTTCGCG 59.032 50.000 0.00 0.00 43.01 5.87
2012 2020 2.031037 TGCTCACAAAATCGTTTCGC 57.969 45.000 0.00 0.00 0.00 4.70
2013 2021 3.554524 ACATGCTCACAAAATCGTTTCG 58.445 40.909 0.00 0.00 0.00 3.46
2014 2022 5.448438 TGTACATGCTCACAAAATCGTTTC 58.552 37.500 0.00 0.00 0.00 2.78
2015 2023 5.431420 TGTACATGCTCACAAAATCGTTT 57.569 34.783 0.00 0.00 0.00 3.60
2016 2024 5.431420 TTGTACATGCTCACAAAATCGTT 57.569 34.783 0.00 0.00 31.93 3.85
2017 2025 5.627499 ATTGTACATGCTCACAAAATCGT 57.373 34.783 10.93 0.00 38.11 3.73
2018 2026 6.571154 CGATATTGTACATGCTCACAAAATCG 59.429 38.462 10.93 9.10 38.11 3.34
2019 2027 7.630026 TCGATATTGTACATGCTCACAAAATC 58.370 34.615 10.93 3.16 38.11 2.17
2020 2028 7.495606 TCTCGATATTGTACATGCTCACAAAAT 59.504 33.333 10.93 1.26 38.11 1.82
2021 2029 6.816140 TCTCGATATTGTACATGCTCACAAAA 59.184 34.615 10.93 0.00 38.11 2.44
2022 2030 6.337356 TCTCGATATTGTACATGCTCACAAA 58.663 36.000 10.93 3.76 38.11 2.83
2023 2031 5.901552 TCTCGATATTGTACATGCTCACAA 58.098 37.500 9.69 9.69 38.89 3.33
2024 2032 5.514274 TCTCGATATTGTACATGCTCACA 57.486 39.130 0.00 0.00 0.00 3.58
2025 2033 5.923114 ACATCTCGATATTGTACATGCTCAC 59.077 40.000 0.00 0.00 0.00 3.51
2026 2034 6.089249 ACATCTCGATATTGTACATGCTCA 57.911 37.500 0.00 0.00 0.00 4.26
2027 2035 6.249471 CGTACATCTCGATATTGTACATGCTC 59.751 42.308 22.09 0.00 43.67 4.26
2028 2036 6.086871 CGTACATCTCGATATTGTACATGCT 58.913 40.000 22.09 0.00 43.67 3.79
2029 2037 5.220043 GCGTACATCTCGATATTGTACATGC 60.220 44.000 22.09 17.12 43.67 4.06
2030 2038 5.002561 CGCGTACATCTCGATATTGTACATG 59.997 44.000 22.09 14.42 43.67 3.21
2031 2039 5.086727 CGCGTACATCTCGATATTGTACAT 58.913 41.667 22.09 0.00 43.67 2.29
2040 2048 0.595053 CTTGGCGCGTACATCTCGAT 60.595 55.000 8.43 0.00 0.00 3.59
2042 2050 1.076533 AACTTGGCGCGTACATCTCG 61.077 55.000 8.43 0.00 0.00 4.04
2045 2053 1.976045 CAAAAACTTGGCGCGTACATC 59.024 47.619 8.43 0.00 0.00 3.06
2121 2129 1.672356 GAACATGGGAGCACGCACT 60.672 57.895 2.41 0.00 41.49 4.40
2122 2130 2.690778 GGAACATGGGAGCACGCAC 61.691 63.158 2.41 0.00 41.49 5.34
2123 2131 2.359850 GGAACATGGGAGCACGCA 60.360 61.111 2.92 2.92 42.77 5.24
2124 2132 1.523154 TTTGGAACATGGGAGCACGC 61.523 55.000 0.00 0.00 39.30 5.34
2125 2133 0.958091 TTTTGGAACATGGGAGCACG 59.042 50.000 0.00 0.00 39.30 5.34
2126 2134 1.686052 TGTTTTGGAACATGGGAGCAC 59.314 47.619 0.00 0.00 40.71 4.40
2127 2135 1.686052 GTGTTTTGGAACATGGGAGCA 59.314 47.619 0.00 0.00 46.63 4.26
2138 2146 2.507886 TCAAGGAGAGTGGTGTTTTGGA 59.492 45.455 0.00 0.00 0.00 3.53
2146 2154 1.341531 CGACAGTTCAAGGAGAGTGGT 59.658 52.381 0.00 0.00 0.00 4.16
2154 2162 0.882042 AGTGCAGCGACAGTTCAAGG 60.882 55.000 0.00 0.00 0.00 3.61
2159 2167 0.104120 TACACAGTGCAGCGACAGTT 59.896 50.000 0.00 0.00 0.00 3.16
2169 2177 5.919141 CGATACCTTATAACCTACACAGTGC 59.081 44.000 0.00 0.00 0.00 4.40
2172 2180 7.507733 AGACGATACCTTATAACCTACACAG 57.492 40.000 0.00 0.00 0.00 3.66
2206 2214 2.125673 AGACAATTCCGACCGGCG 60.126 61.111 0.00 6.30 40.47 6.46
2211 2219 2.494073 ACCAGAGAGAGACAATTCCGAC 59.506 50.000 0.00 0.00 0.00 4.79
2231 2239 1.068287 GAGCGAACACGAGCAGAGAC 61.068 60.000 0.00 0.00 35.48 3.36
2234 2242 2.126850 CGAGCGAACACGAGCAGA 60.127 61.111 0.00 0.00 35.48 4.26
2235 2243 2.429236 ACGAGCGAACACGAGCAG 60.429 61.111 0.00 0.00 33.76 4.24
2236 2244 2.729491 CACGAGCGAACACGAGCA 60.729 61.111 0.00 0.00 33.76 4.26
2237 2245 4.122515 GCACGAGCGAACACGAGC 62.123 66.667 0.00 0.00 38.92 5.03
2238 2246 3.470567 GGCACGAGCGAACACGAG 61.471 66.667 0.00 0.00 43.41 4.18
2239 2247 2.964438 AAAGGCACGAGCGAACACGA 62.964 55.000 0.00 0.00 43.41 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.