Multiple sequence alignment - TraesCS3B01G556300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G556300 chr3B 100.000 3035 0 0 1 3035 790372132 790369098 0.000000e+00 5605.0
1 TraesCS3B01G556300 chr3B 81.379 145 23 3 2890 3033 789758273 789758132 6.880000e-22 115.0
2 TraesCS3B01G556300 chr3B 97.059 34 1 0 67 100 17808100 17808133 1.180000e-04 58.4
3 TraesCS3B01G556300 chr3A 88.323 2218 130 63 134 2309 720699166 720697036 0.000000e+00 2542.0
4 TraesCS3B01G556300 chr3A 88.865 467 37 10 1774 2233 720693975 720693517 7.350000e-156 560.0
5 TraesCS3B01G556300 chr3A 84.756 328 34 7 2708 3033 720694999 720694686 6.320000e-82 315.0
6 TraesCS3B01G556300 chr3A 83.642 324 34 10 2712 3033 720633870 720633564 1.380000e-73 287.0
7 TraesCS3B01G556300 chr3A 96.552 116 3 1 2335 2450 720696893 720696779 1.110000e-44 191.0
8 TraesCS3B01G556300 chr3A 90.299 134 8 2 2322 2450 720693396 720693263 1.450000e-38 171.0
9 TraesCS3B01G556300 chr3A 91.667 72 4 2 2471 2542 720696783 720696714 6.920000e-17 99.0
10 TraesCS3B01G556300 chr3A 90.278 72 5 2 2471 2542 720693267 720693198 3.220000e-15 93.5
11 TraesCS3B01G556300 chr3D 90.847 1912 107 44 658 2542 590440827 590438957 0.000000e+00 2499.0
12 TraesCS3B01G556300 chr3D 82.731 498 41 23 134 608 590441399 590440924 4.710000e-108 401.0
13 TraesCS3B01G556300 chr4A 85.841 113 13 2 8 117 635930046 635930158 1.910000e-22 117.0
14 TraesCS3B01G556300 chr4A 100.000 34 0 0 67 100 715446633 715446600 2.530000e-06 63.9
15 TraesCS3B01G556300 chr1D 82.727 110 14 4 1691 1800 104021191 104021295 3.220000e-15 93.5
16 TraesCS3B01G556300 chr5D 81.609 87 13 2 17 100 371288948 371288862 5.430000e-08 69.4
17 TraesCS3B01G556300 chrUn 79.167 96 17 2 8 100 345308843 345308938 2.530000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G556300 chr3B 790369098 790372132 3034 True 5605.000000 5605 100.000000 1 3035 1 chr3B.!!$R2 3034
1 TraesCS3B01G556300 chr3A 720693198 720699166 5968 True 567.357143 2542 90.105714 134 3033 7 chr3A.!!$R2 2899
2 TraesCS3B01G556300 chr3D 590438957 590441399 2442 True 1450.000000 2499 86.789000 134 2542 2 chr3D.!!$R1 2408

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
687 766 0.034896 AGTTTGAACCCGTGATCGCT 59.965 50.0 4.48 0.0 35.54 4.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2434 2651 0.109532 TGGTCGGCTTGGTCAAATCA 59.89 50.0 0.0 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.674281 GAGTCTAGGGATTGGTTAGGTG 57.326 50.000 0.00 0.00 0.00 4.00
22 23 2.772515 AGTCTAGGGATTGGTTAGGTGC 59.227 50.000 0.00 0.00 0.00 5.01
23 24 1.760613 TCTAGGGATTGGTTAGGTGCG 59.239 52.381 0.00 0.00 0.00 5.34
24 25 0.834612 TAGGGATTGGTTAGGTGCGG 59.165 55.000 0.00 0.00 0.00 5.69
25 26 2.119029 GGGATTGGTTAGGTGCGGC 61.119 63.158 0.00 0.00 0.00 6.53
26 27 2.119029 GGATTGGTTAGGTGCGGCC 61.119 63.158 0.00 0.00 37.58 6.13
27 28 1.377987 GATTGGTTAGGTGCGGCCA 60.378 57.895 2.24 0.00 40.61 5.36
28 29 1.654023 GATTGGTTAGGTGCGGCCAC 61.654 60.000 2.24 0.00 40.61 5.01
36 37 2.125512 GTGCGGCCACCTACAGAG 60.126 66.667 2.24 0.00 35.92 3.35
52 53 6.678857 ACCTACAGAGGAGGATAATTTTCCTT 59.321 38.462 17.33 4.11 46.35 3.36
53 54 7.147461 ACCTACAGAGGAGGATAATTTTCCTTC 60.147 40.741 17.33 15.60 46.35 3.46
54 55 6.642733 ACAGAGGAGGATAATTTTCCTTCA 57.357 37.500 21.43 0.00 46.35 3.02
55 56 6.418946 ACAGAGGAGGATAATTTTCCTTCAC 58.581 40.000 21.43 16.35 46.35 3.18
56 57 6.216456 ACAGAGGAGGATAATTTTCCTTCACT 59.784 38.462 21.43 18.02 46.35 3.41
57 58 7.403231 ACAGAGGAGGATAATTTTCCTTCACTA 59.597 37.037 21.43 0.00 46.35 2.74
58 59 8.267894 CAGAGGAGGATAATTTTCCTTCACTAA 58.732 37.037 21.43 0.00 46.35 2.24
59 60 9.008584 AGAGGAGGATAATTTTCCTTCACTAAT 57.991 33.333 21.43 4.27 46.35 1.73
60 61 9.634021 GAGGAGGATAATTTTCCTTCACTAATT 57.366 33.333 21.43 3.64 46.35 1.40
61 62 9.997172 AGGAGGATAATTTTCCTTCACTAATTT 57.003 29.630 21.43 0.68 46.35 1.82
69 70 7.443259 TTTTCCTTCACTAATTTTAGACCGG 57.557 36.000 0.00 0.00 34.84 5.28
70 71 6.363167 TTCCTTCACTAATTTTAGACCGGA 57.637 37.500 9.46 2.55 34.84 5.14
71 72 6.555463 TCCTTCACTAATTTTAGACCGGAT 57.445 37.500 9.46 0.00 34.84 4.18
72 73 7.664552 TCCTTCACTAATTTTAGACCGGATA 57.335 36.000 9.46 0.00 34.84 2.59
73 74 7.495055 TCCTTCACTAATTTTAGACCGGATAC 58.505 38.462 9.46 0.00 34.84 2.24
74 75 7.343833 TCCTTCACTAATTTTAGACCGGATACT 59.656 37.037 9.46 7.16 34.84 2.12
75 76 7.652507 CCTTCACTAATTTTAGACCGGATACTC 59.347 40.741 9.46 0.00 34.84 2.59
76 77 7.047460 TCACTAATTTTAGACCGGATACTCC 57.953 40.000 9.46 0.00 34.84 3.85
77 78 6.608405 TCACTAATTTTAGACCGGATACTCCA 59.392 38.462 9.46 0.00 33.83 3.86
78 79 6.700520 CACTAATTTTAGACCGGATACTCCAC 59.299 42.308 9.46 0.00 33.83 4.02
79 80 5.952347 AATTTTAGACCGGATACTCCACT 57.048 39.130 9.46 0.00 35.91 4.00
80 81 7.781693 ACTAATTTTAGACCGGATACTCCACTA 59.218 37.037 9.46 0.00 33.83 2.74
81 82 7.427989 AATTTTAGACCGGATACTCCACTAA 57.572 36.000 9.46 2.19 35.91 2.24
82 83 5.841957 TTTAGACCGGATACTCCACTAAC 57.158 43.478 9.46 0.00 35.91 2.34
83 84 3.666345 AGACCGGATACTCCACTAACT 57.334 47.619 9.46 0.00 35.91 2.24
84 85 3.978610 AGACCGGATACTCCACTAACTT 58.021 45.455 9.46 0.00 35.91 2.66
85 86 4.351127 AGACCGGATACTCCACTAACTTT 58.649 43.478 9.46 0.00 35.91 2.66
86 87 4.776308 AGACCGGATACTCCACTAACTTTT 59.224 41.667 9.46 0.00 35.91 2.27
87 88 5.954150 AGACCGGATACTCCACTAACTTTTA 59.046 40.000 9.46 0.00 35.91 1.52
88 89 6.096564 AGACCGGATACTCCACTAACTTTTAG 59.903 42.308 9.46 0.00 35.91 1.85
89 90 5.128335 ACCGGATACTCCACTAACTTTTAGG 59.872 44.000 9.46 0.00 35.91 2.69
90 91 5.452917 CCGGATACTCCACTAACTTTTAGGG 60.453 48.000 0.00 0.00 35.91 3.53
91 92 5.452917 CGGATACTCCACTAACTTTTAGGGG 60.453 48.000 7.80 7.80 39.46 4.79
92 93 5.664457 GGATACTCCACTAACTTTTAGGGGA 59.336 44.000 14.82 14.82 44.36 4.81
93 94 6.329460 GGATACTCCACTAACTTTTAGGGGAT 59.671 42.308 15.75 9.71 45.32 3.85
94 95 5.695424 ACTCCACTAACTTTTAGGGGATC 57.305 43.478 15.75 0.00 45.32 3.36
95 96 4.473922 ACTCCACTAACTTTTAGGGGATCC 59.526 45.833 15.75 1.92 45.32 3.36
96 97 3.453353 TCCACTAACTTTTAGGGGATCCG 59.547 47.826 12.14 0.00 41.89 4.18
97 98 3.199289 CCACTAACTTTTAGGGGATCCGT 59.801 47.826 8.35 0.00 40.55 4.69
98 99 4.324022 CCACTAACTTTTAGGGGATCCGTT 60.324 45.833 8.35 4.96 40.55 4.44
99 100 5.104817 CCACTAACTTTTAGGGGATCCGTTA 60.105 44.000 8.35 5.89 40.55 3.18
100 101 6.408869 CACTAACTTTTAGGGGATCCGTTAA 58.591 40.000 5.45 4.11 38.33 2.01
101 102 6.880529 CACTAACTTTTAGGGGATCCGTTAAA 59.119 38.462 5.45 10.06 38.33 1.52
102 103 7.555195 CACTAACTTTTAGGGGATCCGTTAAAT 59.445 37.037 15.86 7.73 38.33 1.40
103 104 8.111545 ACTAACTTTTAGGGGATCCGTTAAATT 58.888 33.333 15.86 12.11 38.33 1.82
104 105 7.786046 AACTTTTAGGGGATCCGTTAAATTT 57.214 32.000 15.86 11.27 38.33 1.82
105 106 7.165460 ACTTTTAGGGGATCCGTTAAATTTG 57.835 36.000 15.86 12.55 38.33 2.32
106 107 6.722590 ACTTTTAGGGGATCCGTTAAATTTGT 59.277 34.615 15.86 12.97 38.33 2.83
107 108 6.762702 TTTAGGGGATCCGTTAAATTTGTC 57.237 37.500 5.45 0.00 38.33 3.18
108 109 3.628008 AGGGGATCCGTTAAATTTGTCC 58.372 45.455 5.45 0.00 38.33 4.02
109 110 3.268595 AGGGGATCCGTTAAATTTGTCCT 59.731 43.478 5.45 0.00 38.33 3.85
110 111 3.630769 GGGGATCCGTTAAATTTGTCCTC 59.369 47.826 5.45 0.00 0.00 3.71
111 112 4.266714 GGGATCCGTTAAATTTGTCCTCA 58.733 43.478 5.45 0.00 0.00 3.86
112 113 4.335594 GGGATCCGTTAAATTTGTCCTCAG 59.664 45.833 5.45 0.00 0.00 3.35
113 114 4.201920 GGATCCGTTAAATTTGTCCTCAGC 60.202 45.833 0.00 0.00 0.00 4.26
114 115 4.015872 TCCGTTAAATTTGTCCTCAGCT 57.984 40.909 0.00 0.00 0.00 4.24
115 116 3.751175 TCCGTTAAATTTGTCCTCAGCTG 59.249 43.478 7.63 7.63 0.00 4.24
116 117 3.119849 CCGTTAAATTTGTCCTCAGCTGG 60.120 47.826 15.13 4.45 0.00 4.85
117 118 3.670627 CGTTAAATTTGTCCTCAGCTGGC 60.671 47.826 15.13 2.80 0.00 4.85
118 119 2.299326 AAATTTGTCCTCAGCTGGCT 57.701 45.000 15.13 0.00 0.00 4.75
119 120 2.299326 AATTTGTCCTCAGCTGGCTT 57.701 45.000 15.13 0.00 0.00 4.35
120 121 1.831580 ATTTGTCCTCAGCTGGCTTC 58.168 50.000 15.13 3.54 0.00 3.86
121 122 0.473755 TTTGTCCTCAGCTGGCTTCA 59.526 50.000 15.13 6.20 0.00 3.02
122 123 0.035881 TTGTCCTCAGCTGGCTTCAG 59.964 55.000 15.13 2.84 41.30 3.02
123 124 0.833409 TGTCCTCAGCTGGCTTCAGA 60.833 55.000 15.13 0.00 40.86 3.27
124 125 0.322975 GTCCTCAGCTGGCTTCAGAA 59.677 55.000 15.13 0.00 40.86 3.02
125 126 1.059098 TCCTCAGCTGGCTTCAGAAA 58.941 50.000 15.13 0.00 40.86 2.52
126 127 1.421268 TCCTCAGCTGGCTTCAGAAAA 59.579 47.619 15.13 0.00 40.86 2.29
127 128 1.538950 CCTCAGCTGGCTTCAGAAAAC 59.461 52.381 15.13 0.00 40.86 2.43
128 129 2.224606 CTCAGCTGGCTTCAGAAAACA 58.775 47.619 15.13 0.00 40.86 2.83
129 130 2.818432 CTCAGCTGGCTTCAGAAAACAT 59.182 45.455 15.13 0.00 40.86 2.71
130 131 3.225104 TCAGCTGGCTTCAGAAAACATT 58.775 40.909 15.13 0.00 40.86 2.71
131 132 3.005050 TCAGCTGGCTTCAGAAAACATTG 59.995 43.478 15.13 0.00 40.86 2.82
132 133 2.064014 GCTGGCTTCAGAAAACATTGC 58.936 47.619 0.00 0.00 40.86 3.56
185 186 3.422546 GCGTATGCTCGATCAACTCTAAC 59.577 47.826 0.00 0.00 38.39 2.34
190 191 6.992063 ATGCTCGATCAACTCTAACAAAAT 57.008 33.333 0.00 0.00 0.00 1.82
213 214 4.220693 TGAAAATCCCTGATCATGACGT 57.779 40.909 0.00 0.00 0.00 4.34
214 215 4.191544 TGAAAATCCCTGATCATGACGTC 58.808 43.478 9.11 9.11 0.00 4.34
215 216 2.515926 AATCCCTGATCATGACGTCG 57.484 50.000 11.62 0.00 0.00 5.12
216 217 1.692411 ATCCCTGATCATGACGTCGA 58.308 50.000 11.62 3.09 0.00 4.20
217 218 1.692411 TCCCTGATCATGACGTCGAT 58.308 50.000 11.62 8.38 0.00 3.59
218 219 1.609072 TCCCTGATCATGACGTCGATC 59.391 52.381 20.30 20.30 38.81 3.69
219 220 1.611006 CCCTGATCATGACGTCGATCT 59.389 52.381 24.58 7.41 39.06 2.75
220 221 2.814336 CCCTGATCATGACGTCGATCTA 59.186 50.000 24.58 14.91 39.06 1.98
221 222 3.253432 CCCTGATCATGACGTCGATCTAA 59.747 47.826 24.58 11.65 39.06 2.10
222 223 4.222886 CCTGATCATGACGTCGATCTAAC 58.777 47.826 24.58 10.10 39.06 2.34
223 224 4.261197 CCTGATCATGACGTCGATCTAACA 60.261 45.833 24.58 13.16 39.06 2.41
224 225 5.243426 TGATCATGACGTCGATCTAACAA 57.757 39.130 24.58 9.41 39.06 2.83
272 277 2.223537 TACGCCGATCAGACGTACTA 57.776 50.000 7.54 0.00 40.99 1.82
274 279 0.935898 CGCCGATCAGACGTACTAGT 59.064 55.000 0.00 0.00 0.00 2.57
275 280 2.130395 CGCCGATCAGACGTACTAGTA 58.870 52.381 0.00 0.00 0.00 1.82
276 281 2.097007 CGCCGATCAGACGTACTAGTAC 60.097 54.545 21.06 21.06 0.00 2.73
401 429 1.103803 TGATCGAGAGGAAGAACCCG 58.896 55.000 0.00 0.00 40.05 5.28
404 432 2.585153 GAGAGGAAGAACCCGCCC 59.415 66.667 0.00 0.00 40.05 6.13
406 434 1.539124 AGAGGAAGAACCCGCCCTT 60.539 57.895 0.00 0.00 40.05 3.95
415 443 2.280865 CCCGCCCTTCTTATCGCC 60.281 66.667 0.00 0.00 0.00 5.54
416 444 2.808206 CCCGCCCTTCTTATCGCCT 61.808 63.158 0.00 0.00 0.00 5.52
441 469 1.659098 CTCCTCGCATTAAACACCGTC 59.341 52.381 0.00 0.00 0.00 4.79
442 470 0.725117 CCTCGCATTAAACACCGTCC 59.275 55.000 0.00 0.00 0.00 4.79
443 471 0.725117 CTCGCATTAAACACCGTCCC 59.275 55.000 0.00 0.00 0.00 4.46
444 472 1.015085 TCGCATTAAACACCGTCCCG 61.015 55.000 0.00 0.00 0.00 5.14
445 473 1.135939 GCATTAAACACCGTCCCGC 59.864 57.895 0.00 0.00 0.00 6.13
446 474 1.303091 GCATTAAACACCGTCCCGCT 61.303 55.000 0.00 0.00 0.00 5.52
447 475 0.725117 CATTAAACACCGTCCCGCTC 59.275 55.000 0.00 0.00 0.00 5.03
448 476 0.392060 ATTAAACACCGTCCCGCTCC 60.392 55.000 0.00 0.00 0.00 4.70
449 477 2.768503 TTAAACACCGTCCCGCTCCG 62.769 60.000 0.00 0.00 0.00 4.63
462 490 2.792947 GCTCCGGTCCCGATTAGCA 61.793 63.158 7.42 0.00 42.83 3.49
464 492 2.280186 CCGGTCCCGATTAGCAGC 60.280 66.667 7.42 0.00 42.83 5.25
481 509 1.889105 GCCGCGTCATGGATGATGT 60.889 57.895 4.92 0.00 43.88 3.06
644 723 4.494690 CGTGAACGCATGAGCATAGATTTT 60.495 41.667 0.00 0.00 42.27 1.82
649 728 3.608707 CGCATGAGCATAGATTTTCCAGC 60.609 47.826 0.00 0.00 42.27 4.85
650 729 3.305199 GCATGAGCATAGATTTTCCAGCC 60.305 47.826 0.00 0.00 41.58 4.85
651 730 3.650281 TGAGCATAGATTTTCCAGCCA 57.350 42.857 0.00 0.00 0.00 4.75
652 731 3.548770 TGAGCATAGATTTTCCAGCCAG 58.451 45.455 0.00 0.00 0.00 4.85
653 732 2.292845 GAGCATAGATTTTCCAGCCAGC 59.707 50.000 0.00 0.00 0.00 4.85
654 733 1.339291 GCATAGATTTTCCAGCCAGCC 59.661 52.381 0.00 0.00 0.00 4.85
655 734 1.959282 CATAGATTTTCCAGCCAGCCC 59.041 52.381 0.00 0.00 0.00 5.19
656 735 0.998928 TAGATTTTCCAGCCAGCCCA 59.001 50.000 0.00 0.00 0.00 5.36
687 766 0.034896 AGTTTGAACCCGTGATCGCT 59.965 50.000 4.48 0.00 35.54 4.93
737 816 3.970842 TCAACAACACCCCACTAAACTT 58.029 40.909 0.00 0.00 0.00 2.66
738 817 5.113446 TCAACAACACCCCACTAAACTTA 57.887 39.130 0.00 0.00 0.00 2.24
739 818 5.127491 TCAACAACACCCCACTAAACTTAG 58.873 41.667 0.00 0.00 36.82 2.18
740 819 3.483421 ACAACACCCCACTAAACTTAGC 58.517 45.455 0.00 0.00 34.09 3.09
741 820 3.117813 ACAACACCCCACTAAACTTAGCA 60.118 43.478 0.00 0.00 34.09 3.49
742 821 3.868619 ACACCCCACTAAACTTAGCAA 57.131 42.857 0.00 0.00 34.09 3.91
743 822 3.483421 ACACCCCACTAAACTTAGCAAC 58.517 45.455 0.00 0.00 34.09 4.17
744 823 2.482721 CACCCCACTAAACTTAGCAACG 59.517 50.000 0.00 0.00 34.09 4.10
770 849 4.439057 TCAAGAAGCTTCACACGTACTTT 58.561 39.130 27.57 7.54 0.00 2.66
773 852 2.902705 AGCTTCACACGTACTTTCCA 57.097 45.000 0.00 0.00 0.00 3.53
774 853 2.480845 AGCTTCACACGTACTTTCCAC 58.519 47.619 0.00 0.00 0.00 4.02
777 856 3.064271 GCTTCACACGTACTTTCCACAAA 59.936 43.478 0.00 0.00 0.00 2.83
779 858 4.603231 TCACACGTACTTTCCACAAAAC 57.397 40.909 0.00 0.00 0.00 2.43
780 859 4.001652 TCACACGTACTTTCCACAAAACA 58.998 39.130 0.00 0.00 0.00 2.83
781 860 4.454847 TCACACGTACTTTCCACAAAACAA 59.545 37.500 0.00 0.00 0.00 2.83
791 870 8.702163 ACTTTCCACAAAACAAAAGATAACAG 57.298 30.769 0.00 0.00 33.85 3.16
795 874 8.740123 TCCACAAAACAAAAGATAACAGAGTA 57.260 30.769 0.00 0.00 0.00 2.59
796 875 8.836413 TCCACAAAACAAAAGATAACAGAGTAG 58.164 33.333 0.00 0.00 0.00 2.57
797 876 7.591426 CCACAAAACAAAAGATAACAGAGTAGC 59.409 37.037 0.00 0.00 0.00 3.58
798 877 7.321271 CACAAAACAAAAGATAACAGAGTAGCG 59.679 37.037 0.00 0.00 0.00 4.26
799 878 7.012044 ACAAAACAAAAGATAACAGAGTAGCGT 59.988 33.333 0.00 0.00 0.00 5.07
800 879 8.492748 CAAAACAAAAGATAACAGAGTAGCGTA 58.507 33.333 0.00 0.00 0.00 4.42
890 969 2.663852 CACCCACCAACCGACGAC 60.664 66.667 0.00 0.00 0.00 4.34
891 970 4.289245 ACCCACCAACCGACGACG 62.289 66.667 0.00 0.00 39.43 5.12
892 971 4.289245 CCCACCAACCGACGACGT 62.289 66.667 0.00 0.00 37.88 4.34
893 972 2.732094 CCACCAACCGACGACGTC 60.732 66.667 18.04 18.04 37.88 4.34
929 1008 2.052104 CCTCCAAAACCGCATCCCC 61.052 63.158 0.00 0.00 0.00 4.81
930 1009 1.304052 CTCCAAAACCGCATCCCCA 60.304 57.895 0.00 0.00 0.00 4.96
932 1011 2.566010 CAAAACCGCATCCCCACG 59.434 61.111 0.00 0.00 0.00 4.94
979 1070 2.635443 CCACCCGCAACCATCCAAC 61.635 63.158 0.00 0.00 0.00 3.77
982 1073 3.439540 CCGCAACCATCCAACCCG 61.440 66.667 0.00 0.00 0.00 5.28
983 1074 3.439540 CGCAACCATCCAACCCGG 61.440 66.667 0.00 0.00 0.00 5.73
984 1075 3.758931 GCAACCATCCAACCCGGC 61.759 66.667 0.00 0.00 33.14 6.13
985 1076 2.282816 CAACCATCCAACCCGGCA 60.283 61.111 0.00 0.00 33.14 5.69
986 1077 1.905843 CAACCATCCAACCCGGCAA 60.906 57.895 0.00 0.00 33.14 4.52
987 1078 1.152440 AACCATCCAACCCGGCAAA 60.152 52.632 0.00 0.00 33.14 3.68
988 1079 1.184970 AACCATCCAACCCGGCAAAG 61.185 55.000 0.00 0.00 33.14 2.77
2066 2160 5.887288 CGCACGTACGTGTCTAAATTAATTC 59.113 40.000 39.56 22.00 46.90 2.17
2085 2181 0.928229 CGCACGCTGGTAATACTTCC 59.072 55.000 0.00 0.00 0.00 3.46
2092 2188 2.676342 GCTGGTAATACTTCCGTGTTGG 59.324 50.000 0.00 0.00 40.09 3.77
2108 2204 4.002982 GTGTTGGTGATCAGCTGATGTAA 58.997 43.478 33.33 18.10 34.37 2.41
2116 2212 6.647067 GGTGATCAGCTGATGTAAATACTACC 59.353 42.308 33.33 19.50 34.37 3.18
2121 2217 6.544931 TCAGCTGATGTAAATACTACCGTACT 59.455 38.462 13.74 0.00 0.00 2.73
2122 2218 7.067859 TCAGCTGATGTAAATACTACCGTACTT 59.932 37.037 13.74 0.00 0.00 2.24
2134 2230 9.892130 AATACTACCGTACTTTAGTAGTAGTGT 57.108 33.333 20.86 15.76 46.90 3.55
2171 2267 3.278668 TCGAGGAGATTCTTCCGTACT 57.721 47.619 0.00 0.00 42.29 2.73
2173 2269 4.774124 TCGAGGAGATTCTTCCGTACTTA 58.226 43.478 0.00 0.00 42.29 2.24
2174 2270 5.374921 TCGAGGAGATTCTTCCGTACTTAT 58.625 41.667 0.00 0.00 42.29 1.73
2175 2271 5.238868 TCGAGGAGATTCTTCCGTACTTATG 59.761 44.000 0.00 0.00 42.29 1.90
2179 2276 4.950050 AGATTCTTCCGTACTTATGCAGG 58.050 43.478 0.00 0.00 0.00 4.85
2182 2279 4.811969 TCTTCCGTACTTATGCAGGAAA 57.188 40.909 3.30 0.00 40.06 3.13
2186 2283 5.811399 TCCGTACTTATGCAGGAAATTTG 57.189 39.130 0.00 0.00 0.00 2.32
2190 2287 6.093495 CCGTACTTATGCAGGAAATTTGAGAA 59.907 38.462 0.00 0.00 0.00 2.87
2199 2296 6.925165 TGCAGGAAATTTGAGAAACTGATTTC 59.075 34.615 0.00 0.00 44.02 2.17
2200 2297 6.925165 GCAGGAAATTTGAGAAACTGATTTCA 59.075 34.615 0.00 0.00 45.78 2.69
2260 2360 8.594881 TTTTGTGAGAGAAACTTCTGATCTAC 57.405 34.615 0.00 0.00 37.73 2.59
2261 2361 7.531857 TTGTGAGAGAAACTTCTGATCTACT 57.468 36.000 0.00 0.00 37.73 2.57
2262 2362 8.637196 TTGTGAGAGAAACTTCTGATCTACTA 57.363 34.615 0.00 0.00 37.73 1.82
2293 2393 6.648879 TTCTTTGTCTGGTAAATTTCAGGG 57.351 37.500 0.00 0.00 0.00 4.45
2294 2394 5.701224 TCTTTGTCTGGTAAATTTCAGGGT 58.299 37.500 0.00 0.00 0.00 4.34
2311 2411 4.356289 CAGGGTAACTGGTTTCAAAAACG 58.644 43.478 0.00 0.00 43.70 3.60
2314 2414 5.361571 AGGGTAACTGGTTTCAAAAACGAAT 59.638 36.000 0.00 0.00 0.00 3.34
2317 2417 7.380333 GGGTAACTGGTTTCAAAAACGAATTAG 59.620 37.037 0.00 0.00 0.00 1.73
2319 2419 9.934190 GTAACTGGTTTCAAAAACGAATTAGTA 57.066 29.630 0.00 0.00 0.00 1.82
2320 2420 8.845942 AACTGGTTTCAAAAACGAATTAGTAC 57.154 30.769 0.00 0.00 0.00 2.73
2321 2421 8.217131 ACTGGTTTCAAAAACGAATTAGTACT 57.783 30.769 0.00 0.00 0.00 2.73
2324 2424 9.291664 TGGTTTCAAAAACGAATTAGTACTTTG 57.708 29.630 0.00 14.71 32.67 2.77
2325 2425 9.292846 GGTTTCAAAAACGAATTAGTACTTTGT 57.707 29.630 17.77 0.00 32.96 2.83
2330 2430 9.403869 CAAAAACGAATTAGTACTTTGTTTTGC 57.596 29.630 22.40 0.00 44.00 3.68
2332 2432 7.908193 AACGAATTAGTACTTTGTTTTGCAG 57.092 32.000 0.00 0.00 27.96 4.41
2373 2590 2.545952 CGTGGGTGTATCTAGGTGATGC 60.546 54.545 0.00 0.00 38.12 3.91
2430 2647 3.857052 CAAGCTAAAGTGGACGGTGATA 58.143 45.455 0.00 0.00 0.00 2.15
2434 2651 4.894114 AGCTAAAGTGGACGGTGATAGTAT 59.106 41.667 0.00 0.00 0.00 2.12
2450 2667 3.627395 AGTATGATTTGACCAAGCCGA 57.373 42.857 0.00 0.00 0.00 5.54
2451 2668 3.270877 AGTATGATTTGACCAAGCCGAC 58.729 45.455 0.00 0.00 0.00 4.79
2452 2669 1.463674 ATGATTTGACCAAGCCGACC 58.536 50.000 0.00 0.00 0.00 4.79
2453 2670 0.109532 TGATTTGACCAAGCCGACCA 59.890 50.000 0.00 0.00 0.00 4.02
2454 2671 1.271871 TGATTTGACCAAGCCGACCAT 60.272 47.619 0.00 0.00 0.00 3.55
2455 2672 1.401905 GATTTGACCAAGCCGACCATC 59.598 52.381 0.00 0.00 0.00 3.51
2456 2673 0.109532 TTTGACCAAGCCGACCATCA 59.890 50.000 0.00 0.00 0.00 3.07
2457 2674 0.605319 TTGACCAAGCCGACCATCAC 60.605 55.000 0.00 0.00 0.00 3.06
2458 2675 2.047274 ACCAAGCCGACCATCACG 60.047 61.111 0.00 0.00 0.00 4.35
2459 2676 2.264480 CCAAGCCGACCATCACGA 59.736 61.111 0.00 0.00 0.00 4.35
2460 2677 2.100631 CCAAGCCGACCATCACGAC 61.101 63.158 0.00 0.00 0.00 4.34
2461 2678 1.079819 CAAGCCGACCATCACGACT 60.080 57.895 0.00 0.00 0.00 4.18
2462 2679 0.670546 CAAGCCGACCATCACGACTT 60.671 55.000 0.00 0.00 34.24 3.01
2463 2680 0.034896 AAGCCGACCATCACGACTTT 59.965 50.000 0.00 0.00 30.28 2.66
2464 2681 0.892755 AGCCGACCATCACGACTTTA 59.107 50.000 0.00 0.00 0.00 1.85
2465 2682 1.135083 AGCCGACCATCACGACTTTAG 60.135 52.381 0.00 0.00 0.00 1.85
2466 2683 1.922570 CCGACCATCACGACTTTAGG 58.077 55.000 0.00 0.00 0.00 2.69
2467 2684 1.470979 CCGACCATCACGACTTTAGGG 60.471 57.143 0.00 0.00 0.00 3.53
2468 2685 1.475280 CGACCATCACGACTTTAGGGA 59.525 52.381 0.00 0.00 0.00 4.20
2469 2686 2.479730 CGACCATCACGACTTTAGGGAG 60.480 54.545 0.00 0.00 0.00 4.30
2470 2687 2.758979 GACCATCACGACTTTAGGGAGA 59.241 50.000 0.00 0.00 0.00 3.71
2471 2688 2.761208 ACCATCACGACTTTAGGGAGAG 59.239 50.000 0.00 0.00 0.00 3.20
2472 2689 2.482142 CCATCACGACTTTAGGGAGAGC 60.482 54.545 0.00 0.00 0.00 4.09
2473 2690 1.183549 TCACGACTTTAGGGAGAGCC 58.816 55.000 0.00 0.00 0.00 4.70
2474 2691 0.179134 CACGACTTTAGGGAGAGCCG 60.179 60.000 0.00 0.00 33.83 5.52
2477 2694 1.955080 CGACTTTAGGGAGAGCCGTAT 59.045 52.381 0.00 0.00 34.71 3.06
2489 2706 0.546122 AGCCGTATGATTTCCTGGCA 59.454 50.000 3.68 0.00 44.83 4.92
2493 2710 3.415212 CCGTATGATTTCCTGGCATCAT 58.585 45.455 19.20 19.20 41.89 2.45
2505 2722 2.411535 GCATCATGCCAGCTGCTAA 58.588 52.632 8.66 0.00 42.00 3.09
2506 2723 0.030369 GCATCATGCCAGCTGCTAAC 59.970 55.000 8.66 0.00 42.00 2.34
2507 2724 1.385528 CATCATGCCAGCTGCTAACA 58.614 50.000 8.66 3.80 42.00 2.41
2549 3079 3.888323 TGTGGTCAGCATACAAAACATGT 59.112 39.130 0.00 0.00 46.36 3.21
2554 3084 5.630680 GGTCAGCATACAAAACATGTTTGAG 59.369 40.000 23.93 20.31 41.78 3.02
2557 3087 6.917477 TCAGCATACAAAACATGTTTGAGAAC 59.083 34.615 23.93 12.27 41.78 3.01
2565 4231 3.206150 ACATGTTTGAGAACTGTTCGCT 58.794 40.909 21.78 4.10 36.70 4.93
2571 4237 5.049680 TGTTTGAGAACTGTTCGCTAATTCC 60.050 40.000 21.78 11.36 36.70 3.01
2576 4242 5.758924 AGAACTGTTCGCTAATTCCAAAAC 58.241 37.500 14.35 0.00 34.02 2.43
2578 4244 5.705609 ACTGTTCGCTAATTCCAAAACAT 57.294 34.783 0.00 0.00 0.00 2.71
2579 4245 5.460646 ACTGTTCGCTAATTCCAAAACATG 58.539 37.500 0.00 0.00 0.00 3.21
2616 4415 8.975410 AAACATGTTCATGAGTTCATACAATG 57.025 30.769 12.39 0.78 34.26 2.82
2626 4426 7.581213 TGAGTTCATACAATGTTCACCTTTT 57.419 32.000 0.00 0.00 0.00 2.27
2638 4438 9.701355 CAATGTTCACCTTTTTAAAAACATGTC 57.299 29.630 9.31 8.81 37.40 3.06
2644 4444 9.712305 TCACCTTTTTAAAAACATGTCTCAAAA 57.288 25.926 9.31 1.40 0.00 2.44
2648 4448 9.848172 CTTTTTAAAAACATGTCTCAAAATCCG 57.152 29.630 9.31 0.00 0.00 4.18
2650 4450 8.568732 TTTAAAAACATGTCTCAAAATCCGAC 57.431 30.769 0.00 0.00 0.00 4.79
2658 4458 4.036262 TGTCTCAAAATCCGACCAAAAGTG 59.964 41.667 0.00 0.00 0.00 3.16
2662 4462 4.580995 TCAAAATCCGACCAAAAGTGCTAA 59.419 37.500 0.00 0.00 0.00 3.09
2664 4464 5.523438 AAATCCGACCAAAAGTGCTAAAA 57.477 34.783 0.00 0.00 0.00 1.52
2666 4466 5.722021 ATCCGACCAAAAGTGCTAAAATT 57.278 34.783 0.00 0.00 0.00 1.82
2667 4467 5.523438 TCCGACCAAAAGTGCTAAAATTT 57.477 34.783 0.00 0.00 0.00 1.82
2672 4472 8.059502 CCGACCAAAAGTGCTAAAATTTAAAAC 58.940 33.333 0.00 0.00 0.00 2.43
2673 4473 8.059502 CGACCAAAAGTGCTAAAATTTAAAACC 58.940 33.333 0.00 0.00 0.00 3.27
2675 4475 8.670135 ACCAAAAGTGCTAAAATTTAAAACCAC 58.330 29.630 0.00 0.00 0.00 4.16
2676 4476 8.888716 CCAAAAGTGCTAAAATTTAAAACCACT 58.111 29.630 0.00 0.00 34.10 4.00
2826 4626 9.439500 AATTCCCACTTTTGACAAATATTCATG 57.561 29.630 0.50 0.00 0.00 3.07
2945 4746 6.241645 AGGTTCTAGAACATTCTTGGAAAGG 58.758 40.000 31.30 0.00 42.91 3.11
2955 4756 7.232118 ACATTCTTGGAAAGGACCATAAAAG 57.768 36.000 0.00 0.00 46.24 2.27
2956 4757 7.010160 ACATTCTTGGAAAGGACCATAAAAGA 58.990 34.615 0.00 0.00 46.24 2.52
2962 4763 2.029838 AGGACCATAAAAGAGCTGCG 57.970 50.000 0.00 0.00 0.00 5.18
2987 4788 2.851195 CAAGCCCAAGTAGACTGTTGT 58.149 47.619 0.00 0.00 0.00 3.32
2988 4789 3.805807 GCAAGCCCAAGTAGACTGTTGTA 60.806 47.826 0.00 0.00 0.00 2.41
2989 4790 3.963428 AGCCCAAGTAGACTGTTGTAG 57.037 47.619 0.00 0.00 0.00 2.74
2994 4795 4.159879 CCCAAGTAGACTGTTGTAGGTAGG 59.840 50.000 0.00 0.00 0.00 3.18
2995 4796 4.159879 CCAAGTAGACTGTTGTAGGTAGGG 59.840 50.000 0.00 0.00 0.00 3.53
2996 4797 4.671596 AGTAGACTGTTGTAGGTAGGGT 57.328 45.455 0.00 0.00 0.00 4.34
3004 4805 2.234661 GTTGTAGGTAGGGTGGTGGTAC 59.765 54.545 0.00 0.00 0.00 3.34
3020 4821 1.483316 GTACGCGTGTGCTGCATATA 58.517 50.000 24.59 0.00 39.65 0.86
3021 4822 1.189446 GTACGCGTGTGCTGCATATAC 59.811 52.381 24.59 2.90 39.65 1.47
3033 4834 5.178252 GTGCTGCATATACACCAGTGATAAG 59.822 44.000 5.27 0.00 0.00 1.73
3034 4835 5.070313 TGCTGCATATACACCAGTGATAAGA 59.930 40.000 4.48 0.00 0.00 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.181464 GCACCTAACCAATCCCTAGACTC 60.181 52.174 0.00 0.00 0.00 3.36
1 2 2.772515 GCACCTAACCAATCCCTAGACT 59.227 50.000 0.00 0.00 0.00 3.24
2 3 2.483188 CGCACCTAACCAATCCCTAGAC 60.483 54.545 0.00 0.00 0.00 2.59
3 4 1.760613 CGCACCTAACCAATCCCTAGA 59.239 52.381 0.00 0.00 0.00 2.43
4 5 1.202651 CCGCACCTAACCAATCCCTAG 60.203 57.143 0.00 0.00 0.00 3.02
5 6 0.834612 CCGCACCTAACCAATCCCTA 59.165 55.000 0.00 0.00 0.00 3.53
6 7 1.607612 CCGCACCTAACCAATCCCT 59.392 57.895 0.00 0.00 0.00 4.20
7 8 2.119029 GCCGCACCTAACCAATCCC 61.119 63.158 0.00 0.00 0.00 3.85
8 9 2.119029 GGCCGCACCTAACCAATCC 61.119 63.158 0.00 0.00 34.51 3.01
9 10 1.377987 TGGCCGCACCTAACCAATC 60.378 57.895 0.00 0.00 40.22 2.67
10 11 1.677633 GTGGCCGCACCTAACCAAT 60.678 57.895 12.58 0.00 40.22 3.16
11 12 2.281900 GTGGCCGCACCTAACCAA 60.282 61.111 12.58 0.00 40.22 3.67
12 13 4.338710 GGTGGCCGCACCTAACCA 62.339 66.667 19.98 0.00 41.84 3.67
18 19 3.665675 CTCTGTAGGTGGCCGCACC 62.666 68.421 19.98 11.81 45.31 5.01
19 20 2.125512 CTCTGTAGGTGGCCGCAC 60.126 66.667 19.98 9.36 0.00 5.34
20 21 3.390521 CCTCTGTAGGTGGCCGCA 61.391 66.667 19.98 0.00 38.19 5.69
21 22 3.075005 TCCTCTGTAGGTGGCCGC 61.075 66.667 8.12 8.12 44.09 6.53
22 23 2.427245 CCTCCTCTGTAGGTGGCCG 61.427 68.421 0.00 0.00 46.76 6.13
23 24 3.635510 CCTCCTCTGTAGGTGGCC 58.364 66.667 0.00 0.00 46.76 5.36
26 27 6.292150 GGAAAATTATCCTCCTCTGTAGGTG 58.708 44.000 0.00 0.00 44.09 4.00
27 28 6.502074 GGAAAATTATCCTCCTCTGTAGGT 57.498 41.667 0.00 0.00 44.09 3.08
43 44 8.520351 CCGGTCTAAAATTAGTGAAGGAAAATT 58.480 33.333 0.00 0.00 32.61 1.82
44 45 7.886446 TCCGGTCTAAAATTAGTGAAGGAAAAT 59.114 33.333 0.00 0.00 32.61 1.82
45 46 7.225725 TCCGGTCTAAAATTAGTGAAGGAAAA 58.774 34.615 0.00 0.00 32.61 2.29
46 47 6.771573 TCCGGTCTAAAATTAGTGAAGGAAA 58.228 36.000 0.00 0.00 32.61 3.13
47 48 6.363167 TCCGGTCTAAAATTAGTGAAGGAA 57.637 37.500 0.00 0.00 32.61 3.36
48 49 6.555463 ATCCGGTCTAAAATTAGTGAAGGA 57.445 37.500 0.00 6.16 32.61 3.36
49 50 7.498443 AGTATCCGGTCTAAAATTAGTGAAGG 58.502 38.462 0.00 1.78 32.61 3.46
50 51 8.576936 GAGTATCCGGTCTAAAATTAGTGAAG 57.423 38.462 0.00 0.00 32.61 3.02
69 70 6.803366 TCCCCTAAAAGTTAGTGGAGTATC 57.197 41.667 0.00 0.00 0.00 2.24
70 71 6.329460 GGATCCCCTAAAAGTTAGTGGAGTAT 59.671 42.308 0.00 0.00 0.00 2.12
71 72 5.664457 GGATCCCCTAAAAGTTAGTGGAGTA 59.336 44.000 0.00 0.00 0.00 2.59
72 73 4.473922 GGATCCCCTAAAAGTTAGTGGAGT 59.526 45.833 0.00 0.00 0.00 3.85
73 74 4.443034 CGGATCCCCTAAAAGTTAGTGGAG 60.443 50.000 6.06 0.00 0.00 3.86
74 75 3.453353 CGGATCCCCTAAAAGTTAGTGGA 59.547 47.826 6.06 2.31 0.00 4.02
75 76 3.199289 ACGGATCCCCTAAAAGTTAGTGG 59.801 47.826 6.06 0.00 0.00 4.00
76 77 4.482952 ACGGATCCCCTAAAAGTTAGTG 57.517 45.455 6.06 0.00 0.00 2.74
77 78 6.625532 TTAACGGATCCCCTAAAAGTTAGT 57.374 37.500 6.06 0.00 0.00 2.24
78 79 8.515695 AATTTAACGGATCCCCTAAAAGTTAG 57.484 34.615 6.06 0.00 0.00 2.34
79 80 8.741841 CAAATTTAACGGATCCCCTAAAAGTTA 58.258 33.333 6.06 4.18 0.00 2.24
80 81 7.233962 ACAAATTTAACGGATCCCCTAAAAGTT 59.766 33.333 6.06 5.20 0.00 2.66
81 82 6.722590 ACAAATTTAACGGATCCCCTAAAAGT 59.277 34.615 6.06 7.94 0.00 2.66
82 83 7.165460 ACAAATTTAACGGATCCCCTAAAAG 57.835 36.000 6.06 7.41 0.00 2.27
83 84 6.153170 GGACAAATTTAACGGATCCCCTAAAA 59.847 38.462 6.06 2.55 0.00 1.52
84 85 5.653330 GGACAAATTTAACGGATCCCCTAAA 59.347 40.000 6.06 10.41 0.00 1.85
85 86 5.044698 AGGACAAATTTAACGGATCCCCTAA 60.045 40.000 6.06 0.95 0.00 2.69
86 87 4.475747 AGGACAAATTTAACGGATCCCCTA 59.524 41.667 6.06 0.00 0.00 3.53
87 88 3.268595 AGGACAAATTTAACGGATCCCCT 59.731 43.478 6.06 0.00 0.00 4.79
88 89 3.628008 AGGACAAATTTAACGGATCCCC 58.372 45.455 6.06 0.00 0.00 4.81
89 90 4.266714 TGAGGACAAATTTAACGGATCCC 58.733 43.478 6.06 0.00 0.00 3.85
90 91 4.201920 GCTGAGGACAAATTTAACGGATCC 60.202 45.833 0.00 0.00 0.00 3.36
91 92 4.636206 AGCTGAGGACAAATTTAACGGATC 59.364 41.667 0.00 0.00 0.00 3.36
92 93 4.396166 CAGCTGAGGACAAATTTAACGGAT 59.604 41.667 8.42 0.00 0.00 4.18
93 94 3.751175 CAGCTGAGGACAAATTTAACGGA 59.249 43.478 8.42 0.00 0.00 4.69
94 95 3.119849 CCAGCTGAGGACAAATTTAACGG 60.120 47.826 17.39 0.00 0.00 4.44
95 96 3.670627 GCCAGCTGAGGACAAATTTAACG 60.671 47.826 17.39 0.00 0.00 3.18
96 97 3.507622 AGCCAGCTGAGGACAAATTTAAC 59.492 43.478 17.39 0.00 0.00 2.01
97 98 3.766545 AGCCAGCTGAGGACAAATTTAA 58.233 40.909 17.39 0.00 0.00 1.52
98 99 3.439857 AGCCAGCTGAGGACAAATTTA 57.560 42.857 17.39 0.00 0.00 1.40
99 100 2.299326 AGCCAGCTGAGGACAAATTT 57.701 45.000 17.39 0.00 0.00 1.82
100 101 2.165998 GAAGCCAGCTGAGGACAAATT 58.834 47.619 17.39 0.00 0.00 1.82
101 102 1.074405 TGAAGCCAGCTGAGGACAAAT 59.926 47.619 17.39 0.00 0.00 2.32
102 103 0.473755 TGAAGCCAGCTGAGGACAAA 59.526 50.000 17.39 0.00 0.00 2.83
103 104 0.035881 CTGAAGCCAGCTGAGGACAA 59.964 55.000 17.39 0.00 33.07 3.18
104 105 0.833409 TCTGAAGCCAGCTGAGGACA 60.833 55.000 17.39 9.16 40.20 4.02
105 106 0.322975 TTCTGAAGCCAGCTGAGGAC 59.677 55.000 17.39 4.67 40.20 3.85
106 107 1.059098 TTTCTGAAGCCAGCTGAGGA 58.941 50.000 17.39 0.00 40.20 3.71
107 108 1.538950 GTTTTCTGAAGCCAGCTGAGG 59.461 52.381 17.39 0.00 40.20 3.86
108 109 2.224606 TGTTTTCTGAAGCCAGCTGAG 58.775 47.619 17.39 6.56 40.20 3.35
109 110 2.346766 TGTTTTCTGAAGCCAGCTGA 57.653 45.000 17.39 0.00 40.20 4.26
110 111 3.314553 CAATGTTTTCTGAAGCCAGCTG 58.685 45.455 6.78 6.78 40.20 4.24
111 112 2.288640 GCAATGTTTTCTGAAGCCAGCT 60.289 45.455 0.00 0.00 40.20 4.24
112 113 2.064014 GCAATGTTTTCTGAAGCCAGC 58.936 47.619 0.00 0.00 40.20 4.85
113 114 2.322161 CGCAATGTTTTCTGAAGCCAG 58.678 47.619 0.00 0.00 41.74 4.85
114 115 1.602668 GCGCAATGTTTTCTGAAGCCA 60.603 47.619 0.30 0.00 0.00 4.75
115 116 1.063031 GCGCAATGTTTTCTGAAGCC 58.937 50.000 0.30 0.00 0.00 4.35
116 117 2.056094 AGCGCAATGTTTTCTGAAGC 57.944 45.000 11.47 0.00 0.00 3.86
117 118 2.653584 CGAAGCGCAATGTTTTCTGAAG 59.346 45.455 11.47 0.00 0.00 3.02
118 119 2.604373 CCGAAGCGCAATGTTTTCTGAA 60.604 45.455 11.47 0.00 0.00 3.02
119 120 1.069296 CCGAAGCGCAATGTTTTCTGA 60.069 47.619 11.47 0.00 0.00 3.27
120 121 1.330306 CCGAAGCGCAATGTTTTCTG 58.670 50.000 11.47 0.00 0.00 3.02
121 122 0.951558 ACCGAAGCGCAATGTTTTCT 59.048 45.000 11.47 0.00 0.00 2.52
122 123 1.713932 GAACCGAAGCGCAATGTTTTC 59.286 47.619 11.47 1.92 0.00 2.29
123 124 1.066303 TGAACCGAAGCGCAATGTTTT 59.934 42.857 11.47 0.00 0.00 2.43
124 125 0.665835 TGAACCGAAGCGCAATGTTT 59.334 45.000 11.47 0.00 0.00 2.83
125 126 0.238289 CTGAACCGAAGCGCAATGTT 59.762 50.000 11.47 7.29 0.00 2.71
126 127 0.602638 TCTGAACCGAAGCGCAATGT 60.603 50.000 11.47 0.00 0.00 2.71
127 128 0.516877 TTCTGAACCGAAGCGCAATG 59.483 50.000 11.47 0.00 0.00 2.82
128 129 1.234821 TTTCTGAACCGAAGCGCAAT 58.765 45.000 11.47 0.00 0.00 3.56
129 130 1.196808 GATTTCTGAACCGAAGCGCAA 59.803 47.619 11.47 0.00 0.00 4.85
130 131 0.796312 GATTTCTGAACCGAAGCGCA 59.204 50.000 11.47 0.00 0.00 6.09
131 132 0.796312 TGATTTCTGAACCGAAGCGC 59.204 50.000 0.00 0.00 0.00 5.92
132 133 2.337583 TCTGATTTCTGAACCGAAGCG 58.662 47.619 0.00 0.00 0.00 4.68
185 186 9.472361 GTCATGATCAGGGATTTTCATATTTTG 57.528 33.333 7.64 0.00 0.00 2.44
190 191 5.928976 ACGTCATGATCAGGGATTTTCATA 58.071 37.500 7.64 0.00 0.00 2.15
200 201 4.222886 GTTAGATCGACGTCATGATCAGG 58.777 47.826 25.59 0.00 42.72 3.86
213 214 2.159490 TCGCGACATGTTGTTAGATCGA 60.159 45.455 14.64 10.43 0.00 3.59
214 215 2.182014 TCGCGACATGTTGTTAGATCG 58.818 47.619 14.64 8.33 0.00 3.69
215 216 3.551890 ACATCGCGACATGTTGTTAGATC 59.448 43.478 12.93 0.00 32.81 2.75
216 217 3.521560 ACATCGCGACATGTTGTTAGAT 58.478 40.909 12.93 13.18 32.81 1.98
217 218 2.921121 GACATCGCGACATGTTGTTAGA 59.079 45.455 12.93 11.63 37.11 2.10
218 219 2.923655 AGACATCGCGACATGTTGTTAG 59.076 45.455 12.93 6.93 37.11 2.34
219 220 2.921121 GAGACATCGCGACATGTTGTTA 59.079 45.455 12.93 3.68 37.11 2.41
220 221 1.726791 GAGACATCGCGACATGTTGTT 59.273 47.619 12.93 3.05 37.11 2.83
221 222 1.336795 TGAGACATCGCGACATGTTGT 60.337 47.619 12.93 12.25 37.11 3.32
222 223 1.349234 TGAGACATCGCGACATGTTG 58.651 50.000 12.93 8.26 37.11 3.33
223 224 2.078849 TTGAGACATCGCGACATGTT 57.921 45.000 12.93 4.12 37.11 2.71
224 225 1.929169 CATTGAGACATCGCGACATGT 59.071 47.619 12.93 14.06 39.84 3.21
257 258 5.284864 TGTAGTACTAGTACGTCTGATCGG 58.715 45.833 23.87 0.00 40.80 4.18
258 259 7.201224 CGTATGTAGTACTAGTACGTCTGATCG 60.201 44.444 25.33 19.27 40.80 3.69
259 260 7.805542 TCGTATGTAGTACTAGTACGTCTGATC 59.194 40.741 28.74 13.44 40.80 2.92
401 429 1.874320 GCTGTAGGCGATAAGAAGGGC 60.874 57.143 0.00 0.00 0.00 5.19
443 471 2.335369 CTAATCGGGACCGGAGCG 59.665 66.667 9.46 0.00 40.25 5.03
444 472 2.029221 GCTAATCGGGACCGGAGC 59.971 66.667 9.46 13.06 40.25 4.70
445 473 1.364171 CTGCTAATCGGGACCGGAG 59.636 63.158 9.46 7.30 40.25 4.63
446 474 2.792947 GCTGCTAATCGGGACCGGA 61.793 63.158 9.46 3.95 40.25 5.14
447 475 2.280186 GCTGCTAATCGGGACCGG 60.280 66.667 11.27 0.00 40.25 5.28
448 476 2.280186 GGCTGCTAATCGGGACCG 60.280 66.667 3.96 3.96 41.35 4.79
449 477 2.280186 CGGCTGCTAATCGGGACC 60.280 66.667 0.00 0.00 0.00 4.46
450 478 2.967615 GCGGCTGCTAATCGGGAC 60.968 66.667 11.21 0.00 38.39 4.46
451 479 4.585526 CGCGGCTGCTAATCGGGA 62.586 66.667 17.03 0.00 39.65 5.14
452 480 4.891727 ACGCGGCTGCTAATCGGG 62.892 66.667 17.03 10.49 41.51 5.14
453 481 3.330853 GACGCGGCTGCTAATCGG 61.331 66.667 17.03 0.55 39.65 4.18
454 482 1.951130 ATGACGCGGCTGCTAATCG 60.951 57.895 15.80 1.37 39.65 3.34
455 483 1.566563 CATGACGCGGCTGCTAATC 59.433 57.895 15.80 10.90 39.65 1.75
456 484 1.889105 CCATGACGCGGCTGCTAAT 60.889 57.895 15.80 3.20 39.65 1.73
457 485 2.310327 ATCCATGACGCGGCTGCTAA 62.310 55.000 15.80 0.53 39.65 3.09
458 486 2.796193 ATCCATGACGCGGCTGCTA 61.796 57.895 15.80 1.90 39.65 3.49
462 490 1.596203 CATCATCCATGACGCGGCT 60.596 57.895 15.80 0.00 40.03 5.52
464 492 0.530431 TCACATCATCCATGACGCGG 60.530 55.000 12.47 0.00 40.03 6.46
481 509 3.410628 AGGTGCGGCCATCCATCA 61.411 61.111 2.24 0.00 40.61 3.07
518 546 2.269172 GGTAGTTGGCGAGTAAAGAGC 58.731 52.381 0.00 0.00 0.00 4.09
519 547 2.734492 CGGGTAGTTGGCGAGTAAAGAG 60.734 54.545 0.00 0.00 0.00 2.85
611 660 3.649096 CGTTCACGCCATTGGTGA 58.351 55.556 22.75 7.56 42.31 4.02
649 728 1.172180 TTCTTTTCGCTGTGGGCTGG 61.172 55.000 0.00 0.00 39.13 4.85
650 729 0.239347 CTTCTTTTCGCTGTGGGCTG 59.761 55.000 0.00 0.00 39.13 4.85
651 730 0.179018 ACTTCTTTTCGCTGTGGGCT 60.179 50.000 0.00 0.00 39.13 5.19
652 731 0.668535 AACTTCTTTTCGCTGTGGGC 59.331 50.000 0.00 0.00 37.64 5.36
653 732 2.357637 TCAAACTTCTTTTCGCTGTGGG 59.642 45.455 0.00 0.00 0.00 4.61
654 733 3.691049 TCAAACTTCTTTTCGCTGTGG 57.309 42.857 0.00 0.00 0.00 4.17
655 734 3.791353 GGTTCAAACTTCTTTTCGCTGTG 59.209 43.478 0.00 0.00 0.00 3.66
656 735 3.181490 GGGTTCAAACTTCTTTTCGCTGT 60.181 43.478 0.00 0.00 0.00 4.40
687 766 1.309499 CCGCGCTTTTACCATTCCCA 61.309 55.000 5.56 0.00 0.00 4.37
737 816 3.876274 AGCTTCTTGATCTCGTTGCTA 57.124 42.857 0.00 0.00 0.00 3.49
738 817 2.758736 AGCTTCTTGATCTCGTTGCT 57.241 45.000 0.00 0.00 0.00 3.91
739 818 2.738846 TGAAGCTTCTTGATCTCGTTGC 59.261 45.455 26.09 0.00 0.00 4.17
740 819 3.742882 TGTGAAGCTTCTTGATCTCGTTG 59.257 43.478 26.09 0.00 0.00 4.10
741 820 3.743396 GTGTGAAGCTTCTTGATCTCGTT 59.257 43.478 26.09 0.00 0.00 3.85
742 821 3.321497 GTGTGAAGCTTCTTGATCTCGT 58.679 45.455 26.09 0.00 0.00 4.18
743 822 2.343843 CGTGTGAAGCTTCTTGATCTCG 59.656 50.000 26.09 17.38 0.00 4.04
744 823 3.321497 ACGTGTGAAGCTTCTTGATCTC 58.679 45.455 26.09 11.33 0.00 2.75
770 849 7.639113 ACTCTGTTATCTTTTGTTTTGTGGA 57.361 32.000 0.00 0.00 0.00 4.02
773 852 7.012044 ACGCTACTCTGTTATCTTTTGTTTTGT 59.988 33.333 0.00 0.00 0.00 2.83
774 853 7.352739 ACGCTACTCTGTTATCTTTTGTTTTG 58.647 34.615 0.00 0.00 0.00 2.44
777 856 6.310711 GCTACGCTACTCTGTTATCTTTTGTT 59.689 38.462 0.00 0.00 0.00 2.83
779 858 6.037098 AGCTACGCTACTCTGTTATCTTTTG 58.963 40.000 0.00 0.00 36.99 2.44
780 859 6.210287 AGCTACGCTACTCTGTTATCTTTT 57.790 37.500 0.00 0.00 36.99 2.27
781 860 5.838531 AGCTACGCTACTCTGTTATCTTT 57.161 39.130 0.00 0.00 36.99 2.52
791 870 2.943449 AGGTTGAAGCTACGCTACTC 57.057 50.000 0.00 0.00 38.25 2.59
795 874 1.542915 TCGTAAGGTTGAAGCTACGCT 59.457 47.619 16.00 0.00 38.35 5.07
796 875 1.652619 GTCGTAAGGTTGAAGCTACGC 59.347 52.381 16.00 10.56 38.47 4.42
797 876 2.257034 GGTCGTAAGGTTGAAGCTACG 58.743 52.381 15.20 15.20 38.47 3.51
798 877 2.095059 TCGGTCGTAAGGTTGAAGCTAC 60.095 50.000 0.00 0.00 38.47 3.58
799 878 2.161855 TCGGTCGTAAGGTTGAAGCTA 58.838 47.619 0.00 0.00 38.47 3.32
800 879 0.963962 TCGGTCGTAAGGTTGAAGCT 59.036 50.000 0.00 0.00 38.47 3.74
872 951 4.612412 TCGTCGGTTGGTGGGTGC 62.612 66.667 0.00 0.00 0.00 5.01
910 989 2.710902 GGGATGCGGTTTTGGAGGC 61.711 63.158 0.00 0.00 0.00 4.70
1110 1201 2.993264 TCCGGGTCGTCCTTGGAC 60.993 66.667 9.62 9.62 34.85 4.02
2019 2110 1.302192 GGGTCAGCCAAGCGTAACA 60.302 57.895 0.00 0.00 36.17 2.41
2053 2144 4.201783 ACCAGCGTGCGAATTAATTTAGAC 60.202 41.667 1.43 0.00 0.00 2.59
2054 2145 3.936453 ACCAGCGTGCGAATTAATTTAGA 59.064 39.130 1.43 0.00 0.00 2.10
2055 2146 4.273005 ACCAGCGTGCGAATTAATTTAG 57.727 40.909 1.43 1.53 0.00 1.85
2057 2148 4.688511 TTACCAGCGTGCGAATTAATTT 57.311 36.364 1.43 0.00 0.00 1.82
2066 2160 0.928229 GGAAGTATTACCAGCGTGCG 59.072 55.000 0.00 0.00 0.00 5.34
2085 2181 1.395954 CATCAGCTGATCACCAACACG 59.604 52.381 26.44 8.30 31.21 4.49
2092 2188 6.363626 CGGTAGTATTTACATCAGCTGATCAC 59.636 42.308 26.44 15.66 31.21 3.06
2108 2204 9.892130 ACACTACTACTAAAGTACGGTAGTATT 57.108 33.333 20.25 15.93 43.49 1.89
2131 2227 6.255020 CCTCGAATAACCATTAGTGTACACAC 59.745 42.308 27.06 4.51 46.77 3.82
2133 2229 6.567050 TCCTCGAATAACCATTAGTGTACAC 58.433 40.000 18.56 18.56 0.00 2.90
2134 2230 6.604396 TCTCCTCGAATAACCATTAGTGTACA 59.396 38.462 0.00 0.00 0.00 2.90
2171 2267 7.523293 TCAGTTTCTCAAATTTCCTGCATAA 57.477 32.000 0.00 0.00 0.00 1.90
2173 2269 6.600882 ATCAGTTTCTCAAATTTCCTGCAT 57.399 33.333 0.00 0.00 0.00 3.96
2174 2270 6.409524 AATCAGTTTCTCAAATTTCCTGCA 57.590 33.333 0.00 0.00 0.00 4.41
2175 2271 6.925165 TGAAATCAGTTTCTCAAATTTCCTGC 59.075 34.615 0.00 0.00 43.30 4.85
2232 2332 9.784531 AGATCAGAAGTTTCTCTCACAAAAATA 57.215 29.630 0.00 0.00 34.74 1.40
2233 2333 8.688747 AGATCAGAAGTTTCTCTCACAAAAAT 57.311 30.769 0.00 0.00 34.74 1.82
2238 2338 8.815565 ATAGTAGATCAGAAGTTTCTCTCACA 57.184 34.615 0.00 0.00 34.74 3.58
2276 2376 5.414765 CCAGTTACCCTGAAATTTACCAGAC 59.585 44.000 8.15 0.24 44.49 3.51
2293 2393 8.845942 ACTAATTCGTTTTTGAAACCAGTTAC 57.154 30.769 0.00 0.00 0.00 2.50
2294 2394 9.934190 GTACTAATTCGTTTTTGAAACCAGTTA 57.066 29.630 0.00 0.00 0.00 2.24
2304 2404 9.403869 GCAAAACAAAGTACTAATTCGTTTTTG 57.596 29.630 13.59 13.50 33.99 2.44
2309 2409 7.023197 ACTGCAAAACAAAGTACTAATTCGT 57.977 32.000 0.00 0.00 0.00 3.85
2314 2414 7.711772 TGCTACTACTGCAAAACAAAGTACTAA 59.288 33.333 0.00 0.00 37.51 2.24
2317 2417 6.295039 TGCTACTACTGCAAAACAAAGTAC 57.705 37.500 0.00 0.00 37.51 2.73
2319 2419 6.391227 AATGCTACTACTGCAAAACAAAGT 57.609 33.333 0.00 0.00 44.01 2.66
2320 2420 8.023128 ACATAATGCTACTACTGCAAAACAAAG 58.977 33.333 0.00 0.00 44.01 2.77
2321 2421 7.881142 ACATAATGCTACTACTGCAAAACAAA 58.119 30.769 0.00 0.00 44.01 2.83
2324 2424 7.481798 GTCAACATAATGCTACTACTGCAAAAC 59.518 37.037 0.00 0.00 44.01 2.43
2325 2425 7.390440 AGTCAACATAATGCTACTACTGCAAAA 59.610 33.333 0.00 0.00 44.01 2.44
2329 2429 5.174035 CGAGTCAACATAATGCTACTACTGC 59.826 44.000 0.00 0.00 0.00 4.40
2330 2430 6.197282 CACGAGTCAACATAATGCTACTACTG 59.803 42.308 0.00 0.00 0.00 2.74
2332 2432 5.459107 CCACGAGTCAACATAATGCTACTAC 59.541 44.000 0.00 0.00 0.00 2.73
2388 2605 2.095919 GCGTCGTTTCCAAGCTGTAATT 60.096 45.455 0.00 0.00 0.00 1.40
2430 2647 3.270877 GTCGGCTTGGTCAAATCATACT 58.729 45.455 0.00 0.00 0.00 2.12
2434 2651 0.109532 TGGTCGGCTTGGTCAAATCA 59.890 50.000 0.00 0.00 0.00 2.57
2450 2667 2.761208 CTCTCCCTAAAGTCGTGATGGT 59.239 50.000 0.00 0.00 0.00 3.55
2451 2668 2.482142 GCTCTCCCTAAAGTCGTGATGG 60.482 54.545 0.00 0.00 0.00 3.51
2452 2669 2.482142 GGCTCTCCCTAAAGTCGTGATG 60.482 54.545 0.00 0.00 0.00 3.07
2453 2670 1.757699 GGCTCTCCCTAAAGTCGTGAT 59.242 52.381 0.00 0.00 0.00 3.06
2454 2671 1.183549 GGCTCTCCCTAAAGTCGTGA 58.816 55.000 0.00 0.00 0.00 4.35
2455 2672 0.179134 CGGCTCTCCCTAAAGTCGTG 60.179 60.000 0.00 0.00 35.95 4.35
2456 2673 2.190756 CGGCTCTCCCTAAAGTCGT 58.809 57.895 0.00 0.00 35.95 4.34
2457 2674 1.386533 TACGGCTCTCCCTAAAGTCG 58.613 55.000 0.00 0.00 45.67 4.18
2458 2675 2.957006 TCATACGGCTCTCCCTAAAGTC 59.043 50.000 0.00 0.00 0.00 3.01
2459 2676 3.028094 TCATACGGCTCTCCCTAAAGT 57.972 47.619 0.00 0.00 0.00 2.66
2460 2677 4.608948 AATCATACGGCTCTCCCTAAAG 57.391 45.455 0.00 0.00 0.00 1.85
2461 2678 4.202326 GGAAATCATACGGCTCTCCCTAAA 60.202 45.833 0.00 0.00 0.00 1.85
2462 2679 3.323979 GGAAATCATACGGCTCTCCCTAA 59.676 47.826 0.00 0.00 0.00 2.69
2463 2680 2.897969 GGAAATCATACGGCTCTCCCTA 59.102 50.000 0.00 0.00 0.00 3.53
2464 2681 1.694696 GGAAATCATACGGCTCTCCCT 59.305 52.381 0.00 0.00 0.00 4.20
2465 2682 1.694696 AGGAAATCATACGGCTCTCCC 59.305 52.381 0.00 0.00 0.00 4.30
2466 2683 2.548920 CCAGGAAATCATACGGCTCTCC 60.549 54.545 0.00 0.00 0.00 3.71
2467 2684 2.760374 CCAGGAAATCATACGGCTCTC 58.240 52.381 0.00 0.00 0.00 3.20
2468 2685 1.202698 GCCAGGAAATCATACGGCTCT 60.203 52.381 0.00 0.00 36.58 4.09
2469 2686 1.230324 GCCAGGAAATCATACGGCTC 58.770 55.000 0.00 0.00 36.58 4.70
2470 2687 0.546122 TGCCAGGAAATCATACGGCT 59.454 50.000 0.00 0.00 40.27 5.52
2471 2688 1.537202 GATGCCAGGAAATCATACGGC 59.463 52.381 0.00 0.00 40.02 5.68
2472 2689 2.849942 TGATGCCAGGAAATCATACGG 58.150 47.619 0.00 0.00 0.00 4.02
2473 2690 3.365666 GCATGATGCCAGGAAATCATACG 60.366 47.826 6.04 7.66 40.68 3.06
2474 2691 4.170292 GCATGATGCCAGGAAATCATAC 57.830 45.455 6.04 8.27 40.68 2.39
2496 2713 1.735386 AGCATGTCTGTTAGCAGCTG 58.265 50.000 10.11 10.11 42.29 4.24
2505 2722 1.550524 ACACCACGATAGCATGTCTGT 59.449 47.619 0.00 0.00 42.67 3.41
2506 2723 2.299993 ACACCACGATAGCATGTCTG 57.700 50.000 0.00 0.00 42.67 3.51
2507 2724 3.384789 ACATACACCACGATAGCATGTCT 59.615 43.478 0.00 0.00 42.67 3.41
2549 3079 5.060506 TGGAATTAGCGAACAGTTCTCAAA 58.939 37.500 11.60 3.14 0.00 2.69
2554 3084 5.516090 TGTTTTGGAATTAGCGAACAGTTC 58.484 37.500 2.85 2.85 0.00 3.01
2557 3087 5.460646 ACATGTTTTGGAATTAGCGAACAG 58.539 37.500 0.00 0.00 31.47 3.16
2594 4393 8.238631 TGAACATTGTATGAACTCATGAACATG 58.761 33.333 15.39 8.31 37.15 3.21
2602 4401 7.581213 AAAAGGTGAACATTGTATGAACTCA 57.419 32.000 0.00 0.00 0.00 3.41
2612 4411 9.701355 GACATGTTTTTAAAAAGGTGAACATTG 57.299 29.630 22.40 14.67 36.04 2.82
2616 4415 8.696410 TGAGACATGTTTTTAAAAAGGTGAAC 57.304 30.769 22.40 17.09 0.00 3.18
2626 4426 7.142680 GGTCGGATTTTGAGACATGTTTTTAA 58.857 34.615 0.00 0.00 36.68 1.52
2638 4438 3.004734 AGCACTTTTGGTCGGATTTTGAG 59.995 43.478 0.00 0.00 0.00 3.02
2644 4444 5.722021 AATTTTAGCACTTTTGGTCGGAT 57.278 34.783 0.00 0.00 34.50 4.18
2648 4448 8.884726 TGGTTTTAAATTTTAGCACTTTTGGTC 58.115 29.630 0.00 0.00 34.50 4.02
2650 4450 8.888716 AGTGGTTTTAAATTTTAGCACTTTTGG 58.111 29.630 18.66 0.00 44.29 3.28
2685 4485 9.176460 ACATTTCTTGAATTTGTGACCATTTTT 57.824 25.926 0.00 0.00 0.00 1.94
2686 4486 8.735692 ACATTTCTTGAATTTGTGACCATTTT 57.264 26.923 0.00 0.00 0.00 1.82
2687 4487 8.735692 AACATTTCTTGAATTTGTGACCATTT 57.264 26.923 1.90 0.00 0.00 2.32
2688 4488 7.986320 TGAACATTTCTTGAATTTGTGACCATT 59.014 29.630 1.90 0.00 0.00 3.16
2689 4489 7.439056 GTGAACATTTCTTGAATTTGTGACCAT 59.561 33.333 1.90 0.00 0.00 3.55
2690 4490 6.756074 GTGAACATTTCTTGAATTTGTGACCA 59.244 34.615 1.90 0.00 0.00 4.02
2691 4491 6.200854 GGTGAACATTTCTTGAATTTGTGACC 59.799 38.462 9.78 9.78 0.00 4.02
2692 4492 6.756074 TGGTGAACATTTCTTGAATTTGTGAC 59.244 34.615 1.90 0.00 0.00 3.67
2693 4493 6.871844 TGGTGAACATTTCTTGAATTTGTGA 58.128 32.000 1.90 0.00 0.00 3.58
2694 4494 7.278424 ACTTGGTGAACATTTCTTGAATTTGTG 59.722 33.333 1.90 0.00 0.00 3.33
2695 4495 7.330262 ACTTGGTGAACATTTCTTGAATTTGT 58.670 30.769 0.00 0.00 0.00 2.83
2696 4496 7.492020 TGACTTGGTGAACATTTCTTGAATTTG 59.508 33.333 0.00 0.00 0.00 2.32
2697 4497 7.555087 TGACTTGGTGAACATTTCTTGAATTT 58.445 30.769 0.00 0.00 0.00 1.82
2698 4498 7.111247 TGACTTGGTGAACATTTCTTGAATT 57.889 32.000 0.00 0.00 0.00 2.17
2699 4499 6.713762 TGACTTGGTGAACATTTCTTGAAT 57.286 33.333 0.00 0.00 0.00 2.57
2700 4500 6.522625 TTGACTTGGTGAACATTTCTTGAA 57.477 33.333 0.00 0.00 0.00 2.69
2701 4501 6.522625 TTTGACTTGGTGAACATTTCTTGA 57.477 33.333 0.00 0.00 0.00 3.02
2702 4502 7.593875 TTTTTGACTTGGTGAACATTTCTTG 57.406 32.000 0.00 0.00 0.00 3.02
2801 4601 8.814931 TCATGAATATTTGTCAAAAGTGGGAAT 58.185 29.630 1.31 0.00 0.00 3.01
2907 4708 8.887393 TGTTCTAGAACCTTCCCTAAACTATTT 58.113 33.333 28.43 0.00 40.46 1.40
2910 4711 8.445361 AATGTTCTAGAACCTTCCCTAAACTA 57.555 34.615 28.43 9.12 40.46 2.24
2940 4741 3.181506 CGCAGCTCTTTTATGGTCCTTTC 60.182 47.826 0.00 0.00 0.00 2.62
2945 4746 2.289002 CCATCGCAGCTCTTTTATGGTC 59.711 50.000 0.00 0.00 31.28 4.02
2962 4763 1.065126 AGTCTACTTGGGCTTGCCATC 60.065 52.381 14.04 0.00 0.00 3.51
2968 4769 3.008049 CCTACAACAGTCTACTTGGGCTT 59.992 47.826 0.00 0.00 0.00 4.35
2980 4781 1.975680 CACCACCCTACCTACAACAGT 59.024 52.381 0.00 0.00 0.00 3.55
2981 4782 1.278127 CCACCACCCTACCTACAACAG 59.722 57.143 0.00 0.00 0.00 3.16
2987 4788 0.684153 GCGTACCACCACCCTACCTA 60.684 60.000 0.00 0.00 0.00 3.08
2988 4789 1.986210 GCGTACCACCACCCTACCT 60.986 63.158 0.00 0.00 0.00 3.08
2989 4790 2.580815 GCGTACCACCACCCTACC 59.419 66.667 0.00 0.00 0.00 3.18
2994 4795 3.039588 CACACGCGTACCACCACC 61.040 66.667 13.44 0.00 0.00 4.61
2995 4796 3.708734 GCACACGCGTACCACCAC 61.709 66.667 13.44 0.00 0.00 4.16
2996 4797 3.918977 AGCACACGCGTACCACCA 61.919 61.111 13.44 0.00 45.49 4.17
3004 4805 0.043053 GTGTATATGCAGCACACGCG 60.043 55.000 3.53 3.53 45.49 6.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.