Multiple sequence alignment - TraesCS3B01G555700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G555700 chr3B 100.000 6383 0 0 1 6383 789216940 789223322 0.000000e+00 11788.0
1 TraesCS3B01G555700 chr3B 85.526 2577 229 71 3163 5651 789228051 789230571 0.000000e+00 2560.0
2 TraesCS3B01G555700 chr3B 85.929 1798 173 42 3708 5454 789179211 789180979 0.000000e+00 1845.0
3 TraesCS3B01G555700 chr3B 83.373 1660 207 41 403 2021 789175446 789177077 0.000000e+00 1472.0
4 TraesCS3B01G555700 chr3B 88.868 530 51 5 3157 3682 789177599 789178124 0.000000e+00 645.0
5 TraesCS3B01G555700 chr3B 87.347 245 23 5 2545 2782 789177360 789177603 2.270000e-69 274.0
6 TraesCS3B01G555700 chr3B 77.124 306 54 12 104 403 789175238 789175533 5.120000e-36 163.0
7 TraesCS3B01G555700 chr3B 90.164 122 10 2 363 483 789217259 789217379 2.380000e-34 158.0
8 TraesCS3B01G555700 chr3B 90.164 122 10 2 320 440 789217302 789217422 2.380000e-34 158.0
9 TraesCS3B01G555700 chr3B 92.929 99 6 1 2022 2119 714439115 714439017 6.670000e-30 143.0
10 TraesCS3B01G555700 chr3A 91.555 3718 170 54 2461 6059 719994422 719998114 0.000000e+00 4994.0
11 TraesCS3B01G555700 chr3A 90.685 2276 108 37 4193 6383 720221842 720224098 0.000000e+00 2933.0
12 TraesCS3B01G555700 chr3A 84.451 2669 272 65 3157 5744 719934999 719937605 0.000000e+00 2497.0
13 TraesCS3B01G555700 chr3A 85.738 2419 212 52 3163 5519 720229854 720232201 0.000000e+00 2433.0
14 TraesCS3B01G555700 chr3A 86.116 2348 201 55 3163 5454 720076526 720078804 0.000000e+00 2414.0
15 TraesCS3B01G555700 chr3A 91.301 1345 80 13 707 2024 719991491 719992825 0.000000e+00 1801.0
16 TraesCS3B01G555700 chr3A 84.880 1455 161 26 582 2016 719932633 719934048 0.000000e+00 1413.0
17 TraesCS3B01G555700 chr3A 85.739 1171 135 12 871 2025 720075253 720076407 0.000000e+00 1208.0
18 TraesCS3B01G555700 chr3A 82.593 1126 149 19 739 1838 720214217 720215321 0.000000e+00 950.0
19 TraesCS3B01G555700 chr3A 84.232 983 133 8 871 1839 720228116 720229090 0.000000e+00 937.0
20 TraesCS3B01G555700 chr3A 85.449 646 68 10 3163 3786 720216132 720216773 0.000000e+00 649.0
21 TraesCS3B01G555700 chr3A 90.842 404 21 9 89 483 719990857 719991253 1.580000e-145 527.0
22 TraesCS3B01G555700 chr3A 81.366 644 84 20 4773 5402 719938921 719938300 5.750000e-135 492.0
23 TraesCS3B01G555700 chr3A 85.570 298 25 11 331 617 719991143 719991433 4.840000e-76 296.0
24 TraesCS3B01G555700 chr3A 87.755 245 22 4 2545 2782 719934760 719935003 4.870000e-71 279.0
25 TraesCS3B01G555700 chr3A 86.038 265 21 8 177 440 719932076 719932325 2.930000e-68 270.0
26 TraesCS3B01G555700 chr3A 73.580 757 159 26 1043 1777 719835790 719836527 1.060000e-62 252.0
27 TraesCS3B01G555700 chr3A 86.124 209 26 3 2203 2408 720229306 720229514 8.330000e-54 222.0
28 TraesCS3B01G555700 chr3A 88.276 145 15 2 5508 5651 720232220 720232363 8.510000e-39 172.0
29 TraesCS3B01G555700 chr3A 86.164 159 18 3 5594 5752 720232385 720232539 1.100000e-37 169.0
30 TraesCS3B01G555700 chr3A 85.816 141 10 3 5594 5734 720078986 720079116 2.400000e-29 141.0
31 TraesCS3B01G555700 chr3A 82.963 135 23 0 2398 2532 313548795 313548661 8.690000e-24 122.0
32 TraesCS3B01G555700 chr3A 89.011 91 9 1 2123 2212 720076412 720076502 1.880000e-20 111.0
33 TraesCS3B01G555700 chr3A 98.000 50 1 0 309 358 719943100 719943051 3.170000e-13 87.9
34 TraesCS3B01G555700 chr3A 91.379 58 5 0 2339 2396 720215842 720215899 5.300000e-11 80.5
35 TraesCS3B01G555700 chr3A 100.000 33 0 0 1 33 719995707 719995675 1.920000e-05 62.1
36 TraesCS3B01G555700 chr3D 84.812 2693 266 61 3157 5763 590203048 590205683 0.000000e+00 2575.0
37 TraesCS3B01G555700 chr3D 84.821 2688 239 85 3163 5753 590307381 590309996 0.000000e+00 2547.0
38 TraesCS3B01G555700 chr3D 86.388 1675 171 23 369 2021 590200001 590201640 0.000000e+00 1777.0
39 TraesCS3B01G555700 chr3D 86.619 1547 164 21 363 1875 590237826 590239363 0.000000e+00 1670.0
40 TraesCS3B01G555700 chr3D 85.024 1636 158 41 3158 4728 590239990 590241603 0.000000e+00 1583.0
41 TraesCS3B01G555700 chr3D 85.959 1225 129 19 4105 5309 589000711 588999510 0.000000e+00 1269.0
42 TraesCS3B01G555700 chr3D 86.043 1175 127 21 884 2025 590306094 590307264 0.000000e+00 1227.0
43 TraesCS3B01G555700 chr3D 85.477 964 114 14 4031 4973 588977737 588976779 0.000000e+00 981.0
44 TraesCS3B01G555700 chr3D 87.479 607 68 3 4130 4728 590149171 590149777 0.000000e+00 693.0
45 TraesCS3B01G555700 chr3D 87.196 617 66 6 4123 4728 590091854 590091240 0.000000e+00 689.0
46 TraesCS3B01G555700 chr3D 88.686 548 59 2 4184 4728 590221772 590221225 0.000000e+00 665.0
47 TraesCS3B01G555700 chr3D 88.321 548 62 1 4183 4728 590043016 590043563 0.000000e+00 656.0
48 TraesCS3B01G555700 chr3D 82.459 667 73 27 4757 5402 590043622 590044265 1.570000e-150 544.0
49 TraesCS3B01G555700 chr3D 87.838 296 28 3 5159 5454 590241624 590241911 2.200000e-89 340.0
50 TraesCS3B01G555700 chr3D 87.900 281 34 0 5029 5309 588976669 588976389 1.330000e-86 331.0
51 TraesCS3B01G555700 chr3D 90.551 127 11 1 2545 2670 590201964 590202090 3.960000e-37 167.0
52 TraesCS3B01G555700 chr3D 83.088 136 21 2 2398 2532 199244418 199244284 8.690000e-24 122.0
53 TraesCS3B01G555700 chr3D 93.617 47 1 2 309 353 590225397 590225351 1.150000e-07 69.4
54 TraesCS3B01G555700 chr3D 91.667 48 4 0 1110 1157 590010004 590010051 4.130000e-07 67.6
55 TraesCS3B01G555700 chr1B 88.500 200 20 3 2953 3151 561698970 561699167 8.270000e-59 239.0
56 TraesCS3B01G555700 chr1B 83.333 144 18 5 2389 2529 491765707 491765847 1.870000e-25 128.0
57 TraesCS3B01G555700 chr1B 81.944 144 21 5 2398 2537 6392706 6392564 4.040000e-22 117.0
58 TraesCS3B01G555700 chr7B 86.829 205 21 3 2955 3158 317830986 317831185 2.320000e-54 224.0
59 TraesCS3B01G555700 chr7B 93.814 97 6 0 2022 2118 113199780 113199876 5.160000e-31 147.0
60 TraesCS3B01G555700 chr7B 84.138 145 21 2 2386 2529 460995595 460995738 8.630000e-29 139.0
61 TraesCS3B01G555700 chr7B 83.333 138 19 4 2392 2527 678722532 678722667 2.420000e-24 124.0
62 TraesCS3B01G555700 chr4A 86.700 203 24 3 2952 3152 504220324 504220123 8.330000e-54 222.0
63 TraesCS3B01G555700 chr4A 79.310 174 23 10 668 829 615213710 615213882 6.770000e-20 110.0
64 TraesCS3B01G555700 chr4B 86.275 204 22 5 2952 3152 128563661 128563461 3.880000e-52 217.0
65 TraesCS3B01G555700 chr4B 84.127 126 20 0 2386 2511 23325586 23325711 8.690000e-24 122.0
66 TraesCS3B01G555700 chr5D 86.070 201 25 2 2953 3153 328921612 328921415 5.010000e-51 213.0
67 TraesCS3B01G555700 chr5D 85.377 212 23 7 2953 3162 433997022 433997227 5.010000e-51 213.0
68 TraesCS3B01G555700 chr5D 84.878 205 29 2 2955 3158 462731434 462731637 8.390000e-49 206.0
69 TraesCS3B01G555700 chr7D 85.572 201 29 0 2952 3152 104883520 104883720 1.800000e-50 211.0
70 TraesCS3B01G555700 chr7D 88.889 135 15 0 2398 2532 264761821 264761687 3.960000e-37 167.0
71 TraesCS3B01G555700 chr7D 95.000 100 4 1 2022 2120 168580016 168579917 8.570000e-34 156.0
72 TraesCS3B01G555700 chr4D 89.362 141 13 2 2398 2537 75266749 75266888 6.580000e-40 176.0
73 TraesCS3B01G555700 chr4D 87.943 141 13 3 2398 2537 416061718 416061581 5.120000e-36 163.0
74 TraesCS3B01G555700 chr4D 86.429 140 19 0 2398 2537 53756342 53756481 3.080000e-33 154.0
75 TraesCS3B01G555700 chr4D 93.878 98 5 1 2022 2118 177433204 177433301 5.160000e-31 147.0
76 TraesCS3B01G555700 chr4D 91.429 105 6 2 2022 2125 9493041 9492939 2.400000e-29 141.0
77 TraesCS3B01G555700 chr5B 89.474 133 12 2 2398 2529 539314283 539314414 3.960000e-37 167.0
78 TraesCS3B01G555700 chr5B 87.143 140 18 0 2398 2537 103463317 103463456 6.620000e-35 159.0
79 TraesCS3B01G555700 chr5B 90.385 104 9 1 2022 2124 121676291 121676394 1.120000e-27 135.0
80 TraesCS3B01G555700 chr5B 83.099 142 19 5 2392 2532 466652559 466652422 2.420000e-24 124.0
81 TraesCS3B01G555700 chr5A 89.394 132 14 0 2398 2529 680074991 680074860 3.960000e-37 167.0
82 TraesCS3B01G555700 chr5A 91.176 102 8 1 2021 2121 63375675 63375574 3.100000e-28 137.0
83 TraesCS3B01G555700 chr7A 87.770 139 16 1 2400 2537 476915652 476915790 1.840000e-35 161.0
84 TraesCS3B01G555700 chr6A 88.636 132 15 0 2398 2529 112005011 112005142 1.840000e-35 161.0
85 TraesCS3B01G555700 chr6A 92.079 101 7 1 2022 2121 127607879 127607979 2.400000e-29 141.0
86 TraesCS3B01G555700 chr2A 84.459 148 19 4 2390 2537 673509039 673509182 6.670000e-30 143.0
87 TraesCS3B01G555700 chr2A 93.617 94 5 1 2023 2115 614579816 614579909 8.630000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G555700 chr3B 789216940 789223322 6382 False 11788.000000 11788 100.000000 1 6383 1 chr3B.!!$F1 6382
1 TraesCS3B01G555700 chr3B 789228051 789230571 2520 False 2560.000000 2560 85.526000 3163 5651 1 chr3B.!!$F2 2488
2 TraesCS3B01G555700 chr3B 789175238 789180979 5741 False 879.800000 1845 84.528200 104 5454 5 chr3B.!!$F3 5350
3 TraesCS3B01G555700 chr3A 720221842 720224098 2256 False 2933.000000 2933 90.685000 4193 6383 1 chr3A.!!$F2 2190
4 TraesCS3B01G555700 chr3A 719990857 719998114 7257 False 1904.500000 4994 89.817000 89 6059 4 chr3A.!!$F4 5970
5 TraesCS3B01G555700 chr3A 719932076 719937605 5529 False 1114.750000 2497 85.781000 177 5744 4 chr3A.!!$F3 5567
6 TraesCS3B01G555700 chr3A 720075253 720079116 3863 False 968.500000 2414 86.670500 871 5734 4 chr3A.!!$F5 4863
7 TraesCS3B01G555700 chr3A 720228116 720232539 4423 False 786.600000 2433 86.106800 871 5752 5 chr3A.!!$F7 4881
8 TraesCS3B01G555700 chr3A 720214217 720216773 2556 False 559.833333 950 86.473667 739 3786 3 chr3A.!!$F6 3047
9 TraesCS3B01G555700 chr3A 719938300 719938921 621 True 492.000000 492 81.366000 4773 5402 1 chr3A.!!$R2 629
10 TraesCS3B01G555700 chr3A 719835790 719836527 737 False 252.000000 252 73.580000 1043 1777 1 chr3A.!!$F1 734
11 TraesCS3B01G555700 chr3D 590306094 590309996 3902 False 1887.000000 2547 85.432000 884 5753 2 chr3D.!!$F6 4869
12 TraesCS3B01G555700 chr3D 590200001 590205683 5682 False 1506.333333 2575 87.250333 369 5763 3 chr3D.!!$F4 5394
13 TraesCS3B01G555700 chr3D 588999510 589000711 1201 True 1269.000000 1269 85.959000 4105 5309 1 chr3D.!!$R2 1204
14 TraesCS3B01G555700 chr3D 590237826 590241911 4085 False 1197.666667 1670 86.493667 363 5454 3 chr3D.!!$F5 5091
15 TraesCS3B01G555700 chr3D 590149171 590149777 606 False 693.000000 693 87.479000 4130 4728 1 chr3D.!!$F2 598
16 TraesCS3B01G555700 chr3D 590091240 590091854 614 True 689.000000 689 87.196000 4123 4728 1 chr3D.!!$R3 605
17 TraesCS3B01G555700 chr3D 588976389 588977737 1348 True 656.000000 981 86.688500 4031 5309 2 chr3D.!!$R4 1278
18 TraesCS3B01G555700 chr3D 590043016 590044265 1249 False 600.000000 656 85.390000 4183 5402 2 chr3D.!!$F3 1219
19 TraesCS3B01G555700 chr3D 590221225 590225397 4172 True 367.200000 665 91.151500 309 4728 2 chr3D.!!$R5 4419

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
67 68 0.039472 TTTGCAATGCAGAGCCCCTA 59.961 50.000 8.31 0.0 40.61 3.53 F
78 79 0.107643 GAGCCCCTATCTGAAGCACC 59.892 60.000 0.00 0.0 0.00 5.01 F
125 126 0.107848 CGTAACCCACAAGCCCCTAG 60.108 60.000 0.00 0.0 0.00 3.02 F
2038 2628 0.337082 TGATACTCCCTCGGTCCCAA 59.663 55.000 0.00 0.0 0.00 4.12 F
2039 2629 1.273381 TGATACTCCCTCGGTCCCAAA 60.273 52.381 0.00 0.0 0.00 3.28 F
2698 6235 1.533033 AAAGTTCAAAGGGGGCCGG 60.533 57.895 0.00 0.0 0.00 6.13 F
3856 8548 2.730183 CGAAGTCACACGCTTTTCAA 57.270 45.000 0.00 0.0 0.00 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1960 2541 0.320771 ACTGAAGTCGTGGTGCCATC 60.321 55.000 0.00 0.00 0.00 3.51 R
2025 2615 2.092646 CACATATTTTGGGACCGAGGGA 60.093 50.000 0.00 0.00 0.00 4.20 R
2100 2690 2.019807 AGTACTCCCTCCGTCCAAAA 57.980 50.000 0.00 0.00 0.00 2.44 R
4021 8732 1.002792 GTTTCAGTCCACTGCCGTTTC 60.003 52.381 1.49 0.00 43.46 2.78 R
4051 8790 6.899393 TTCCTTTTCAGTGCATTACATCTT 57.101 33.333 0.00 0.00 0.00 2.40 R
4111 8870 3.116939 TCCATGGGAAAAGGACTTTTGGA 60.117 43.478 13.02 11.74 42.26 3.53 R
5519 10443 1.293498 CTACGGACACCAGCAAGCT 59.707 57.895 0.00 0.00 0.00 3.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 9.798994 GCTACTGTAATTAGCTCTACTGTTTAA 57.201 33.333 14.22 0.00 39.17 1.52
39 40 9.857957 ACTGTAATTAGCTCTACTGTTTAAGAC 57.142 33.333 0.00 0.00 29.06 3.01
41 42 9.856488 TGTAATTAGCTCTACTGTTTAAGACTG 57.144 33.333 0.00 0.00 0.00 3.51
42 43 9.857957 GTAATTAGCTCTACTGTTTAAGACTGT 57.142 33.333 0.00 0.00 42.30 3.55
44 45 8.989653 ATTAGCTCTACTGTTTAAGACTGTTC 57.010 34.615 0.00 0.00 40.42 3.18
45 46 5.785243 AGCTCTACTGTTTAAGACTGTTCC 58.215 41.667 0.00 0.00 40.42 3.62
46 47 4.930405 GCTCTACTGTTTAAGACTGTTCCC 59.070 45.833 0.00 0.00 40.42 3.97
47 48 5.479124 TCTACTGTTTAAGACTGTTCCCC 57.521 43.478 0.00 0.00 40.42 4.81
48 49 5.152934 TCTACTGTTTAAGACTGTTCCCCT 58.847 41.667 0.00 0.00 40.42 4.79
49 50 4.790718 ACTGTTTAAGACTGTTCCCCTT 57.209 40.909 0.00 0.00 37.14 3.95
50 51 5.125367 ACTGTTTAAGACTGTTCCCCTTT 57.875 39.130 0.00 0.00 37.14 3.11
51 52 4.887655 ACTGTTTAAGACTGTTCCCCTTTG 59.112 41.667 0.00 0.00 37.14 2.77
52 53 3.634910 TGTTTAAGACTGTTCCCCTTTGC 59.365 43.478 0.00 0.00 0.00 3.68
53 54 3.586470 TTAAGACTGTTCCCCTTTGCA 57.414 42.857 0.00 0.00 0.00 4.08
54 55 2.452600 AAGACTGTTCCCCTTTGCAA 57.547 45.000 0.00 0.00 0.00 4.08
55 56 2.683211 AGACTGTTCCCCTTTGCAAT 57.317 45.000 0.00 0.00 0.00 3.56
56 57 2.242043 AGACTGTTCCCCTTTGCAATG 58.758 47.619 0.00 1.92 0.00 2.82
57 58 0.681175 ACTGTTCCCCTTTGCAATGC 59.319 50.000 0.00 0.00 0.00 3.56
58 59 0.680618 CTGTTCCCCTTTGCAATGCA 59.319 50.000 2.72 2.72 36.47 3.96
59 60 0.680618 TGTTCCCCTTTGCAATGCAG 59.319 50.000 8.31 0.00 40.61 4.41
60 61 0.968405 GTTCCCCTTTGCAATGCAGA 59.032 50.000 8.31 2.54 40.61 4.26
61 62 1.067354 GTTCCCCTTTGCAATGCAGAG 60.067 52.381 17.61 17.61 40.61 3.35
62 63 1.217244 CCCCTTTGCAATGCAGAGC 59.783 57.895 18.92 6.23 39.08 4.09
63 64 1.217244 CCCTTTGCAATGCAGAGCC 59.783 57.895 18.92 0.00 39.08 4.70
64 65 1.217244 CCTTTGCAATGCAGAGCCC 59.783 57.895 18.92 0.00 39.08 5.19
65 66 1.217244 CTTTGCAATGCAGAGCCCC 59.783 57.895 12.82 0.00 40.61 5.80
66 67 1.228956 TTTGCAATGCAGAGCCCCT 60.229 52.632 8.31 0.00 40.61 4.79
67 68 0.039472 TTTGCAATGCAGAGCCCCTA 59.961 50.000 8.31 0.00 40.61 3.53
68 69 0.259647 TTGCAATGCAGAGCCCCTAT 59.740 50.000 8.31 0.00 40.61 2.57
69 70 0.179009 TGCAATGCAGAGCCCCTATC 60.179 55.000 2.72 0.00 33.32 2.08
70 71 0.110104 GCAATGCAGAGCCCCTATCT 59.890 55.000 0.00 0.00 0.00 1.98
71 72 1.893544 CAATGCAGAGCCCCTATCTG 58.106 55.000 0.00 0.00 45.71 2.90
72 73 1.419012 CAATGCAGAGCCCCTATCTGA 59.581 52.381 7.13 0.00 45.80 3.27
73 74 1.811778 ATGCAGAGCCCCTATCTGAA 58.188 50.000 7.13 0.00 45.80 3.02
74 75 1.126488 TGCAGAGCCCCTATCTGAAG 58.874 55.000 7.13 0.00 45.80 3.02
75 76 0.250252 GCAGAGCCCCTATCTGAAGC 60.250 60.000 7.13 0.00 45.80 3.86
76 77 1.126488 CAGAGCCCCTATCTGAAGCA 58.874 55.000 0.00 0.00 45.80 3.91
77 78 1.127343 AGAGCCCCTATCTGAAGCAC 58.873 55.000 0.00 0.00 0.00 4.40
78 79 0.107643 GAGCCCCTATCTGAAGCACC 59.892 60.000 0.00 0.00 0.00 5.01
79 80 0.327000 AGCCCCTATCTGAAGCACCT 60.327 55.000 0.00 0.00 0.00 4.00
80 81 1.062121 AGCCCCTATCTGAAGCACCTA 60.062 52.381 0.00 0.00 0.00 3.08
81 82 1.981495 GCCCCTATCTGAAGCACCTAT 59.019 52.381 0.00 0.00 0.00 2.57
82 83 2.027653 GCCCCTATCTGAAGCACCTATC 60.028 54.545 0.00 0.00 0.00 2.08
83 84 3.515562 CCCCTATCTGAAGCACCTATCT 58.484 50.000 0.00 0.00 0.00 1.98
84 85 3.260380 CCCCTATCTGAAGCACCTATCTG 59.740 52.174 0.00 0.00 0.00 2.90
85 86 4.155709 CCCTATCTGAAGCACCTATCTGA 58.844 47.826 0.00 0.00 0.00 3.27
86 87 4.021544 CCCTATCTGAAGCACCTATCTGAC 60.022 50.000 0.00 0.00 0.00 3.51
87 88 4.021544 CCTATCTGAAGCACCTATCTGACC 60.022 50.000 0.00 0.00 0.00 4.02
91 92 1.207329 GAAGCACCTATCTGACCGGTT 59.793 52.381 9.42 0.00 0.00 4.44
94 95 1.739371 GCACCTATCTGACCGGTTGAC 60.739 57.143 9.42 0.00 0.00 3.18
97 98 2.233922 ACCTATCTGACCGGTTGACAAG 59.766 50.000 9.42 11.32 0.00 3.16
123 124 2.754375 CGTAACCCACAAGCCCCT 59.246 61.111 0.00 0.00 0.00 4.79
124 125 1.555477 CCGTAACCCACAAGCCCCTA 61.555 60.000 0.00 0.00 0.00 3.53
125 126 0.107848 CGTAACCCACAAGCCCCTAG 60.108 60.000 0.00 0.00 0.00 3.02
126 127 0.393944 GTAACCCACAAGCCCCTAGC 60.394 60.000 0.00 0.00 44.25 3.42
174 176 8.562635 AGTGGTAAGCCCCTAGATTTATTTTTA 58.437 33.333 0.00 0.00 0.00 1.52
175 177 9.192642 GTGGTAAGCCCCTAGATTTATTTTTAA 57.807 33.333 0.00 0.00 0.00 1.52
268 272 9.991388 AAACAACATGTTGAATTGAGAATTTTG 57.009 25.926 38.30 12.75 40.14 2.44
281 285 2.108952 AGAATTTTGGAGTGCCTGTCCT 59.891 45.455 0.00 0.00 34.86 3.85
284 288 2.859165 TTTGGAGTGCCTGTCCTAAG 57.141 50.000 0.00 0.00 34.86 2.18
286 290 0.976641 TGGAGTGCCTGTCCTAAGTG 59.023 55.000 0.00 0.00 34.86 3.16
405 416 3.141767 ACTTCCAGCTTAACCCTGTTC 57.858 47.619 0.00 0.00 0.00 3.18
424 479 6.235231 TGTTCTTGACTTGGAGTAGACTTT 57.765 37.500 0.00 0.00 0.00 2.66
457 512 5.281727 CAGCTTAACCCTGTTTTTGACTTC 58.718 41.667 0.00 0.00 0.00 3.01
471 527 4.768130 TTGACTTCGAGTAGACTTCCTG 57.232 45.455 0.00 0.00 0.00 3.86
476 532 4.456566 ACTTCGAGTAGACTTCCTGAACTC 59.543 45.833 0.00 0.00 34.55 3.01
478 534 3.082548 CGAGTAGACTTCCTGAACTCCA 58.917 50.000 0.00 0.00 34.42 3.86
479 535 3.127895 CGAGTAGACTTCCTGAACTCCAG 59.872 52.174 0.00 0.00 42.55 3.86
480 536 2.829120 AGTAGACTTCCTGAACTCCAGC 59.171 50.000 0.00 0.00 41.57 4.85
481 537 2.022718 AGACTTCCTGAACTCCAGCT 57.977 50.000 0.00 0.00 41.57 4.24
483 539 2.038295 AGACTTCCTGAACTCCAGCTTG 59.962 50.000 0.00 0.00 41.57 4.01
484 540 1.163554 CTTCCTGAACTCCAGCTTGC 58.836 55.000 0.00 0.00 41.57 4.01
532 588 6.769822 ACTTGTGACATCTGAACTTTGAGATT 59.230 34.615 0.00 0.00 28.31 2.40
533 589 7.284034 ACTTGTGACATCTGAACTTTGAGATTT 59.716 33.333 0.00 0.00 28.31 2.17
534 590 8.675705 TTGTGACATCTGAACTTTGAGATTTA 57.324 30.769 0.00 0.00 28.31 1.40
535 591 8.315391 TGTGACATCTGAACTTTGAGATTTAG 57.685 34.615 0.00 0.00 28.31 1.85
536 592 8.150296 TGTGACATCTGAACTTTGAGATTTAGA 58.850 33.333 0.00 0.00 28.31 2.10
537 593 8.655092 GTGACATCTGAACTTTGAGATTTAGAG 58.345 37.037 0.00 0.00 28.31 2.43
538 594 7.332926 TGACATCTGAACTTTGAGATTTAGAGC 59.667 37.037 0.00 0.00 28.31 4.09
539 595 7.164122 ACATCTGAACTTTGAGATTTAGAGCA 58.836 34.615 0.00 0.00 28.31 4.26
540 596 7.333921 ACATCTGAACTTTGAGATTTAGAGCAG 59.666 37.037 0.00 0.00 28.31 4.24
627 927 8.043113 TCTAGAACATGATCACTGTATTTGCTT 58.957 33.333 0.00 0.00 0.00 3.91
635 935 8.347004 TGATCACTGTATTTGCTTAAATGGAA 57.653 30.769 0.00 0.00 0.00 3.53
684 984 2.871795 TATCAGCTCCTGACGGCCCA 62.872 60.000 0.00 0.00 43.63 5.36
746 1070 7.723172 ACAGGTTCTGAATTCTGAAGATTCTTT 59.277 33.333 23.41 11.70 35.07 2.52
858 1344 5.491078 TGATCCAGAGTTTATAACTTGGGGT 59.509 40.000 14.79 7.81 43.03 4.95
873 1359 1.335132 GGGGTGGTGGAGCTTCGATA 61.335 60.000 0.00 0.00 0.00 2.92
1016 1535 4.288105 CCTGGCTATGAGGTTCCTATCATT 59.712 45.833 0.00 0.00 37.36 2.57
1062 1581 0.625980 TGGCCATGGTTATCCTCCCA 60.626 55.000 14.67 6.48 34.66 4.37
1071 1590 2.043227 GTTATCCTCCCACTCCTCCTG 58.957 57.143 0.00 0.00 0.00 3.86
1175 1709 2.117865 CCTCAAGCTCCTCTCTTCCAT 58.882 52.381 0.00 0.00 0.00 3.41
1296 1842 2.042259 CAATGCCTCTGCCTGCGAA 61.042 57.895 0.00 0.00 36.33 4.70
1491 2055 3.743396 ACATCTCGACAAGAGCTTTCAAC 59.257 43.478 0.00 0.00 46.44 3.18
1687 2260 5.408604 CAGTTAACACTCAAGTACATGGACC 59.591 44.000 3.84 0.00 0.00 4.46
1757 2330 4.444720 CGAGATATACCCGTTCTTTCAAGC 59.555 45.833 0.00 0.00 0.00 4.01
1940 2521 8.717717 TCATGGTATGTAAATTCTCATCCTTCT 58.282 33.333 0.00 0.00 0.00 2.85
1942 2523 8.089625 TGGTATGTAAATTCTCATCCTTCTCA 57.910 34.615 0.00 0.00 0.00 3.27
1960 2541 1.280133 TCAGCAGATCCTTGGTTGGAG 59.720 52.381 0.00 0.00 39.78 3.86
1972 2560 1.003839 GTTGGAGATGGCACCACGA 60.004 57.895 0.00 0.00 34.33 4.35
2025 2615 5.638596 TGTCACACATCTTACGTGATACT 57.361 39.130 0.00 0.00 41.39 2.12
2026 2616 5.637809 TGTCACACATCTTACGTGATACTC 58.362 41.667 0.00 0.00 41.39 2.59
2027 2617 5.035443 GTCACACATCTTACGTGATACTCC 58.965 45.833 0.00 0.00 41.39 3.85
2028 2618 4.097437 TCACACATCTTACGTGATACTCCC 59.903 45.833 0.00 0.00 37.80 4.30
2029 2619 4.098044 CACACATCTTACGTGATACTCCCT 59.902 45.833 0.00 0.00 37.80 4.20
2030 2620 4.338682 ACACATCTTACGTGATACTCCCTC 59.661 45.833 0.00 0.00 37.80 4.30
2031 2621 3.564644 ACATCTTACGTGATACTCCCTCG 59.435 47.826 0.00 0.00 0.00 4.63
2032 2622 2.569059 TCTTACGTGATACTCCCTCGG 58.431 52.381 0.00 0.00 0.00 4.63
2033 2623 2.092753 TCTTACGTGATACTCCCTCGGT 60.093 50.000 0.00 0.00 0.00 4.69
2034 2624 1.959042 TACGTGATACTCCCTCGGTC 58.041 55.000 0.00 0.00 0.00 4.79
2035 2625 0.750911 ACGTGATACTCCCTCGGTCC 60.751 60.000 0.00 0.00 0.00 4.46
2036 2626 1.453762 CGTGATACTCCCTCGGTCCC 61.454 65.000 0.00 0.00 0.00 4.46
2037 2627 0.396695 GTGATACTCCCTCGGTCCCA 60.397 60.000 0.00 0.00 0.00 4.37
2038 2628 0.337082 TGATACTCCCTCGGTCCCAA 59.663 55.000 0.00 0.00 0.00 4.12
2039 2629 1.273381 TGATACTCCCTCGGTCCCAAA 60.273 52.381 0.00 0.00 0.00 3.28
2040 2630 1.835531 GATACTCCCTCGGTCCCAAAA 59.164 52.381 0.00 0.00 0.00 2.44
2041 2631 1.961133 TACTCCCTCGGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
2042 2632 1.961133 ACTCCCTCGGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2043 2633 2.488836 ACTCCCTCGGTCCCAAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
2044 2634 2.172717 ACTCCCTCGGTCCCAAAATATG 59.827 50.000 0.00 0.00 0.00 1.78
2045 2635 2.172717 CTCCCTCGGTCCCAAAATATGT 59.827 50.000 0.00 0.00 0.00 2.29
2046 2636 2.092646 TCCCTCGGTCCCAAAATATGTG 60.093 50.000 0.00 0.00 0.00 3.21
2047 2637 2.356741 CCCTCGGTCCCAAAATATGTGT 60.357 50.000 0.00 0.00 0.00 3.72
2048 2638 2.943033 CCTCGGTCCCAAAATATGTGTC 59.057 50.000 0.00 0.00 0.00 3.67
2049 2639 3.370527 CCTCGGTCCCAAAATATGTGTCT 60.371 47.826 0.00 0.00 0.00 3.41
2050 2640 4.261801 CTCGGTCCCAAAATATGTGTCTT 58.738 43.478 0.00 0.00 0.00 3.01
2051 2641 5.423704 TCGGTCCCAAAATATGTGTCTTA 57.576 39.130 0.00 0.00 0.00 2.10
2052 2642 5.806818 TCGGTCCCAAAATATGTGTCTTAA 58.193 37.500 0.00 0.00 0.00 1.85
2053 2643 5.644636 TCGGTCCCAAAATATGTGTCTTAAC 59.355 40.000 0.00 0.00 0.00 2.01
2054 2644 5.163693 CGGTCCCAAAATATGTGTCTTAACC 60.164 44.000 0.00 0.00 0.00 2.85
2055 2645 5.949952 GGTCCCAAAATATGTGTCTTAACCT 59.050 40.000 0.00 0.00 0.00 3.50
2056 2646 6.436218 GGTCCCAAAATATGTGTCTTAACCTT 59.564 38.462 0.00 0.00 0.00 3.50
2057 2647 7.612633 GGTCCCAAAATATGTGTCTTAACCTTA 59.387 37.037 0.00 0.00 0.00 2.69
2058 2648 8.674607 GTCCCAAAATATGTGTCTTAACCTTAG 58.325 37.037 0.00 0.00 0.00 2.18
2059 2649 8.387813 TCCCAAAATATGTGTCTTAACCTTAGT 58.612 33.333 0.00 0.00 0.00 2.24
2060 2650 9.675464 CCCAAAATATGTGTCTTAACCTTAGTA 57.325 33.333 0.00 0.00 0.00 1.82
2069 2659 9.398538 TGTGTCTTAACCTTAGTACAATTTTGT 57.601 29.630 1.08 1.08 44.86 2.83
2095 2685 8.958119 ACTGAAGTTAGTACAAATTTGAGACA 57.042 30.769 24.64 9.62 0.00 3.41
2096 2686 8.827677 ACTGAAGTTAGTACAAATTTGAGACAC 58.172 33.333 24.64 14.81 0.00 3.67
2097 2687 8.958119 TGAAGTTAGTACAAATTTGAGACACT 57.042 30.769 24.64 19.94 0.00 3.55
2098 2688 9.391006 TGAAGTTAGTACAAATTTGAGACACTT 57.609 29.630 24.64 21.92 0.00 3.16
2105 2695 9.965824 AGTACAAATTTGAGACACTTATTTTGG 57.034 29.630 24.64 0.00 0.00 3.28
2106 2696 9.959749 GTACAAATTTGAGACACTTATTTTGGA 57.040 29.630 24.64 0.00 0.00 3.53
2107 2697 8.871686 ACAAATTTGAGACACTTATTTTGGAC 57.128 30.769 24.64 0.00 0.00 4.02
2108 2698 7.647715 ACAAATTTGAGACACTTATTTTGGACG 59.352 33.333 24.64 0.00 0.00 4.79
2109 2699 5.682943 TTTGAGACACTTATTTTGGACGG 57.317 39.130 0.00 0.00 0.00 4.79
2110 2700 4.610605 TGAGACACTTATTTTGGACGGA 57.389 40.909 0.00 0.00 0.00 4.69
2111 2701 4.566004 TGAGACACTTATTTTGGACGGAG 58.434 43.478 0.00 0.00 0.00 4.63
2112 2702 3.933332 GAGACACTTATTTTGGACGGAGG 59.067 47.826 0.00 0.00 0.00 4.30
2113 2703 3.007635 GACACTTATTTTGGACGGAGGG 58.992 50.000 0.00 0.00 0.00 4.30
2114 2704 2.640826 ACACTTATTTTGGACGGAGGGA 59.359 45.455 0.00 0.00 0.00 4.20
2115 2705 3.270877 CACTTATTTTGGACGGAGGGAG 58.729 50.000 0.00 0.00 0.00 4.30
2116 2706 2.910977 ACTTATTTTGGACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
2117 2707 4.081309 CACTTATTTTGGACGGAGGGAGTA 60.081 45.833 0.00 0.00 0.00 2.59
2118 2708 4.081254 ACTTATTTTGGACGGAGGGAGTAC 60.081 45.833 0.00 0.00 0.00 2.73
2119 2709 2.019807 TTTTGGACGGAGGGAGTACT 57.980 50.000 0.00 0.00 0.00 2.73
2201 2915 3.812156 TCTTCTTTCCGTTGAGTGACA 57.188 42.857 0.00 0.00 0.00 3.58
2204 2918 5.123227 TCTTCTTTCCGTTGAGTGACAATT 58.877 37.500 0.00 0.00 40.76 2.32
2281 3437 9.435570 AGGAAGCTAGGAAATTAGAGTTGTATA 57.564 33.333 0.00 0.00 0.00 1.47
2304 3460 5.954335 ACTACACTAAATTGCCTTTCATGC 58.046 37.500 0.00 0.00 0.00 4.06
2305 3461 5.711976 ACTACACTAAATTGCCTTTCATGCT 59.288 36.000 0.00 0.00 0.00 3.79
2318 3474 6.127925 TGCCTTTCATGCTAGTTGATTTAGTG 60.128 38.462 0.00 0.00 0.00 2.74
2341 3497 4.771590 ACATAGTTGCAATGTCCACTTG 57.228 40.909 0.59 0.00 32.02 3.16
2409 3736 1.764134 TGTTACACACTCCCTCCGTTT 59.236 47.619 0.00 0.00 0.00 3.60
2411 3738 2.005370 TACACACTCCCTCCGTTTCT 57.995 50.000 0.00 0.00 0.00 2.52
2417 3744 5.189145 ACACACTCCCTCCGTTTCTAAATAT 59.811 40.000 0.00 0.00 0.00 1.28
2419 3746 7.093201 ACACACTCCCTCCGTTTCTAAATATAA 60.093 37.037 0.00 0.00 0.00 0.98
2423 3750 6.742109 TCCCTCCGTTTCTAAATATAAGACG 58.258 40.000 0.00 0.00 0.00 4.18
2425 3752 6.982724 CCCTCCGTTTCTAAATATAAGACGTT 59.017 38.462 0.00 0.00 0.00 3.99
2427 3754 8.876790 CCTCCGTTTCTAAATATAAGACGTTTT 58.123 33.333 0.00 0.00 0.00 2.43
2444 3771 7.540299 AGACGTTTTAGAGATTTCAGTAGAGG 58.460 38.462 0.00 0.00 0.00 3.69
2445 3772 6.100668 ACGTTTTAGAGATTTCAGTAGAGGC 58.899 40.000 0.00 0.00 0.00 4.70
2447 3774 7.122353 ACGTTTTAGAGATTTCAGTAGAGGCTA 59.878 37.037 0.00 0.00 0.00 3.93
2449 3776 8.688151 GTTTTAGAGATTTCAGTAGAGGCTAGA 58.312 37.037 0.00 0.00 0.00 2.43
2450 3777 9.427821 TTTTAGAGATTTCAGTAGAGGCTAGAT 57.572 33.333 0.00 0.00 0.00 1.98
2456 3783 8.176780 AGATTTCAGTAGAGGCTAGATAAGGAT 58.823 37.037 0.00 0.00 0.00 3.24
2460 3787 7.934313 TCAGTAGAGGCTAGATAAGGATGTAT 58.066 38.462 0.00 0.00 0.00 2.29
2488 4885 7.536855 AGACGTATTTTAGAGTGTAGGTTCAG 58.463 38.462 0.00 0.00 0.00 3.02
2698 6235 1.533033 AAAGTTCAAAGGGGGCCGG 60.533 57.895 0.00 0.00 0.00 6.13
2763 6307 4.147321 ACAACTGATTTGCCATTGTCTCT 58.853 39.130 0.00 0.00 39.01 3.10
2791 6335 8.995027 ACACTAAATAAATTAGATGATGCCCA 57.005 30.769 2.45 0.00 43.16 5.36
2804 6348 3.350612 GCCCAGCGCGTTGTTGTA 61.351 61.111 21.64 0.00 0.00 2.41
2823 6367 9.632807 TTGTTGTAGAAATTGGTTGCAATATAC 57.367 29.630 0.59 0.00 0.00 1.47
2826 6370 9.853555 TTGTAGAAATTGGTTGCAATATACTTG 57.146 29.630 0.59 0.00 0.00 3.16
2898 6442 9.527566 CTTGAACCAAAATTTAAAATGCATACG 57.472 29.630 0.00 0.00 0.00 3.06
2903 6447 8.707839 ACCAAAATTTAAAATGCATACGACTTG 58.292 29.630 0.00 0.00 0.00 3.16
3044 6592 3.513515 GGGTCTTTTCCCATGCATTGTTA 59.486 43.478 0.00 0.00 46.30 2.41
3058 6606 3.367292 GCATTGTTACATGTTGAGGTGGG 60.367 47.826 2.30 0.00 0.00 4.61
3139 6687 4.661709 AGTTAGTGGGGGTGACTCTTTTAA 59.338 41.667 0.00 0.00 0.00 1.52
3273 6835 6.183360 GGCAGCTCCATTACTGTCAATATTTT 60.183 38.462 0.00 0.00 38.41 1.82
3428 7025 6.818644 TCCTCTCAATTTAGGAACTGAAATCG 59.181 38.462 0.00 0.00 37.52 3.34
3730 8409 7.436376 CAGTAACTGAATCGTGATATGATGTGT 59.564 37.037 0.00 0.00 32.44 3.72
3809 8500 9.758021 AATGGCAGTTATCATATTATTCATCCA 57.242 29.630 0.00 0.00 0.00 3.41
3828 8519 5.241403 TCCATGTAATAGCAACCTATGGG 57.759 43.478 0.00 0.00 34.54 4.00
3856 8548 2.730183 CGAAGTCACACGCTTTTCAA 57.270 45.000 0.00 0.00 0.00 2.69
3870 8562 8.822855 ACACGCTTTTCAATATATTATCGACAA 58.177 29.630 0.00 0.00 0.00 3.18
3924 8632 7.450074 TGCTTGATAAACATATACTCCCGAAT 58.550 34.615 0.00 0.00 0.00 3.34
3935 8643 7.713942 ACATATACTCCCGAATTCCAGTTTTAC 59.286 37.037 0.00 0.00 0.00 2.01
4021 8732 8.728833 AGAAAGAATTAAGATGCAACTCTTGAG 58.271 33.333 11.96 0.00 36.21 3.02
4095 8835 4.771590 ATATTAAGCCATGCGTTGGATG 57.228 40.909 9.57 0.00 45.64 3.51
4111 8870 6.458206 GCGTTGGATGTGTGATGTTGTATATT 60.458 38.462 0.00 0.00 0.00 1.28
4267 9046 2.878406 ACATTCAAGACAGGGTTTCACG 59.122 45.455 0.00 0.00 0.00 4.35
4279 9058 4.506288 CAGGGTTTCACGGAATTCAAAAAC 59.494 41.667 7.93 10.71 0.00 2.43
4470 9253 5.422666 TTCGTCCATGCTATAAAATGCAG 57.577 39.130 0.00 0.00 42.74 4.41
4501 9284 2.480037 TGCAGATGTTAGCAGAACAACG 59.520 45.455 8.12 4.55 35.51 4.10
4769 9586 6.600882 AATCAGCTGATTCATCAACCTTTT 57.399 33.333 31.78 10.03 40.49 2.27
4835 9653 2.895404 TGGTTATATGGCTCCGGAGTAC 59.105 50.000 31.43 24.07 0.00 2.73
4955 9773 7.004555 TCAGCATGAAGACTTTCTTAACCTA 57.995 36.000 0.00 0.00 45.97 3.08
5130 10018 1.881498 GCTAAGGAGATCCATGCAGCC 60.881 57.143 0.92 0.00 38.89 4.85
5196 10084 1.035923 ATGCAGATGATCGACCGACT 58.964 50.000 0.00 0.00 0.00 4.18
5402 10298 2.945668 AGTTGGTCACTTTGCTTCAGTC 59.054 45.455 0.00 0.00 27.32 3.51
5403 10299 1.967319 TGGTCACTTTGCTTCAGTCC 58.033 50.000 0.00 0.00 0.00 3.85
5404 10300 1.490490 TGGTCACTTTGCTTCAGTCCT 59.510 47.619 0.00 0.00 0.00 3.85
5405 10301 2.092429 TGGTCACTTTGCTTCAGTCCTT 60.092 45.455 0.00 0.00 0.00 3.36
5406 10302 2.550180 GGTCACTTTGCTTCAGTCCTTC 59.450 50.000 0.00 0.00 0.00 3.46
5407 10303 3.206150 GTCACTTTGCTTCAGTCCTTCA 58.794 45.455 0.00 0.00 0.00 3.02
5408 10304 3.249559 GTCACTTTGCTTCAGTCCTTCAG 59.750 47.826 0.00 0.00 0.00 3.02
5409 10305 3.118261 TCACTTTGCTTCAGTCCTTCAGT 60.118 43.478 0.00 0.00 0.00 3.41
5454 10350 1.378911 CAGCTGGCAGGCATACCAA 60.379 57.895 17.64 0.00 39.06 3.67
5457 10353 0.967380 GCTGGCAGGCATACCAAGTT 60.967 55.000 17.64 0.00 39.06 2.66
5458 10354 1.681780 GCTGGCAGGCATACCAAGTTA 60.682 52.381 17.64 0.00 39.06 2.24
5460 10356 1.025041 GGCAGGCATACCAAGTTAGC 58.975 55.000 0.00 0.00 39.06 3.09
5461 10357 1.681780 GGCAGGCATACCAAGTTAGCA 60.682 52.381 0.00 0.00 39.06 3.49
5462 10358 2.301346 GCAGGCATACCAAGTTAGCAT 58.699 47.619 0.00 0.00 39.06 3.79
5463 10359 3.476552 GCAGGCATACCAAGTTAGCATA 58.523 45.455 0.00 0.00 39.06 3.14
5464 10360 3.251004 GCAGGCATACCAAGTTAGCATAC 59.749 47.826 0.00 0.00 39.06 2.39
5471 10391 2.292267 CCAAGTTAGCATACCAGCCTG 58.708 52.381 0.00 0.00 34.23 4.85
5519 10443 0.745845 GACCGGCGTACCTCTGTAGA 60.746 60.000 6.01 0.00 0.00 2.59
5584 10540 5.070001 TCTGTATTTAGCTTTTGTGCACCT 58.930 37.500 15.69 6.07 34.99 4.00
5591 10547 1.069049 GCTTTTGTGCACCTCACCATT 59.931 47.619 15.69 0.00 45.03 3.16
5624 10585 1.082690 GGCTGCTGCTGTAGACTTTC 58.917 55.000 15.64 0.00 39.59 2.62
5651 10612 8.940397 AAGAAGACTTGAAATCCAAAGGATTA 57.060 30.769 11.39 0.00 41.77 1.75
5652 10613 9.367160 AAGAAGACTTGAAATCCAAAGGATTAA 57.633 29.630 11.39 3.33 41.77 1.40
5705 10745 1.709147 CTGCTGGGCGAAGTATGTGC 61.709 60.000 0.00 0.00 0.00 4.57
5854 10894 5.496556 TGACGGTGGATAAATTCATTGACT 58.503 37.500 0.00 0.00 0.00 3.41
5859 10899 6.238374 CGGTGGATAAATTCATTGACTGTACC 60.238 42.308 0.00 0.00 0.00 3.34
5860 10900 6.601613 GGTGGATAAATTCATTGACTGTACCA 59.398 38.462 0.00 0.00 0.00 3.25
5861 10901 7.415206 GGTGGATAAATTCATTGACTGTACCAC 60.415 40.741 0.00 0.00 40.14 4.16
5862 10902 7.336931 GTGGATAAATTCATTGACTGTACCACT 59.663 37.037 0.00 0.00 38.57 4.00
5863 10903 7.552687 TGGATAAATTCATTGACTGTACCACTC 59.447 37.037 0.00 0.00 0.00 3.51
6075 11129 7.915397 ACACAATGCTGTTAGTAACTTCTTTTG 59.085 33.333 14.00 12.37 31.64 2.44
6094 11148 2.762745 TGTTCGAGGAAAACAGTAGGC 58.237 47.619 0.00 0.00 32.98 3.93
6112 11166 6.758886 CAGTAGGCTTCCTTACTGTATTCTTG 59.241 42.308 6.26 0.00 34.11 3.02
6140 11194 1.731720 ATGCAAAGAAGACGAGAGGC 58.268 50.000 0.00 0.00 42.06 4.70
6170 11224 1.168407 TGAAGTTGGAGCAGCAGCAC 61.168 55.000 3.17 0.00 45.49 4.40
6195 11252 5.587844 CAGGCTAGATAAAAAGCACTCACAT 59.412 40.000 0.00 0.00 40.61 3.21
6196 11253 5.587844 AGGCTAGATAAAAAGCACTCACATG 59.412 40.000 0.00 0.00 40.61 3.21
6197 11254 5.355350 GGCTAGATAAAAAGCACTCACATGT 59.645 40.000 0.00 0.00 40.61 3.21
6198 11255 6.538742 GGCTAGATAAAAAGCACTCACATGTA 59.461 38.462 0.00 0.00 40.61 2.29
6226 11283 6.030082 TCCTCTAATCTGGGAGTAAGGTTTT 58.970 40.000 0.00 0.00 0.00 2.43
6229 11286 6.947464 TCTAATCTGGGAGTAAGGTTTTCTG 58.053 40.000 0.00 0.00 0.00 3.02
6234 11291 4.648651 TGGGAGTAAGGTTTTCTGTTAGC 58.351 43.478 0.00 0.00 0.00 3.09
6237 11294 5.280062 GGGAGTAAGGTTTTCTGTTAGCTCT 60.280 44.000 0.00 0.00 0.00 4.09
6238 11295 5.639931 GGAGTAAGGTTTTCTGTTAGCTCTG 59.360 44.000 0.00 0.00 0.00 3.35
6347 11404 5.978919 ACTAAAGCAATGTGTCAATGTGTTG 59.021 36.000 0.00 0.00 36.65 3.33
6348 11405 2.746269 AGCAATGTGTCAATGTGTTGC 58.254 42.857 0.00 0.00 41.50 4.17
6355 11420 4.388485 TGTGTCAATGTGTTGCTGTATCT 58.612 39.130 0.00 0.00 35.26 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 9.798994 TTAAACAGTAGAGCTAATTACAGTAGC 57.201 33.333 0.00 0.00 43.61 3.58
13 14 9.857957 GTCTTAAACAGTAGAGCTAATTACAGT 57.142 33.333 0.00 0.00 0.00 3.55
15 16 9.856488 CAGTCTTAAACAGTAGAGCTAATTACA 57.144 33.333 0.00 0.00 0.00 2.41
16 17 9.857957 ACAGTCTTAAACAGTAGAGCTAATTAC 57.142 33.333 0.00 0.00 0.00 1.89
18 19 9.425577 GAACAGTCTTAAACAGTAGAGCTAATT 57.574 33.333 0.00 0.00 0.00 1.40
19 20 8.035984 GGAACAGTCTTAAACAGTAGAGCTAAT 58.964 37.037 0.00 0.00 0.00 1.73
20 21 7.376615 GGAACAGTCTTAAACAGTAGAGCTAA 58.623 38.462 0.00 0.00 0.00 3.09
21 22 6.071503 GGGAACAGTCTTAAACAGTAGAGCTA 60.072 42.308 0.00 0.00 0.00 3.32
22 23 5.279556 GGGAACAGTCTTAAACAGTAGAGCT 60.280 44.000 0.00 0.00 0.00 4.09
23 24 4.930405 GGGAACAGTCTTAAACAGTAGAGC 59.070 45.833 0.00 0.00 0.00 4.09
24 25 5.246429 AGGGGAACAGTCTTAAACAGTAGAG 59.754 44.000 0.00 0.00 0.00 2.43
25 26 5.152934 AGGGGAACAGTCTTAAACAGTAGA 58.847 41.667 0.00 0.00 0.00 2.59
26 27 5.485209 AGGGGAACAGTCTTAAACAGTAG 57.515 43.478 0.00 0.00 0.00 2.57
27 28 5.899631 AAGGGGAACAGTCTTAAACAGTA 57.100 39.130 0.00 0.00 0.00 2.74
28 29 4.790718 AAGGGGAACAGTCTTAAACAGT 57.209 40.909 0.00 0.00 0.00 3.55
29 30 4.261614 GCAAAGGGGAACAGTCTTAAACAG 60.262 45.833 0.00 0.00 0.00 3.16
30 31 3.634910 GCAAAGGGGAACAGTCTTAAACA 59.365 43.478 0.00 0.00 0.00 2.83
31 32 3.634910 TGCAAAGGGGAACAGTCTTAAAC 59.365 43.478 0.00 0.00 0.00 2.01
32 33 3.904717 TGCAAAGGGGAACAGTCTTAAA 58.095 40.909 0.00 0.00 0.00 1.52
33 34 3.586470 TGCAAAGGGGAACAGTCTTAA 57.414 42.857 0.00 0.00 0.00 1.85
34 35 3.586470 TTGCAAAGGGGAACAGTCTTA 57.414 42.857 0.00 0.00 0.00 2.10
35 36 2.452600 TTGCAAAGGGGAACAGTCTT 57.547 45.000 0.00 0.00 0.00 3.01
36 37 2.242043 CATTGCAAAGGGGAACAGTCT 58.758 47.619 1.71 0.00 0.00 3.24
37 38 1.337167 GCATTGCAAAGGGGAACAGTC 60.337 52.381 1.71 0.00 0.00 3.51
38 39 0.681175 GCATTGCAAAGGGGAACAGT 59.319 50.000 1.71 0.00 0.00 3.55
39 40 0.680618 TGCATTGCAAAGGGGAACAG 59.319 50.000 9.33 0.00 34.76 3.16
40 41 0.680618 CTGCATTGCAAAGGGGAACA 59.319 50.000 13.18 0.00 38.41 3.18
41 42 0.968405 TCTGCATTGCAAAGGGGAAC 59.032 50.000 13.18 0.00 38.41 3.62
42 43 1.259609 CTCTGCATTGCAAAGGGGAA 58.740 50.000 13.18 0.00 38.41 3.97
43 44 1.252904 GCTCTGCATTGCAAAGGGGA 61.253 55.000 13.60 5.82 38.41 4.81
44 45 1.217244 GCTCTGCATTGCAAAGGGG 59.783 57.895 13.60 3.15 38.41 4.79
45 46 1.217244 GGCTCTGCATTGCAAAGGG 59.783 57.895 13.60 3.87 38.41 3.95
46 47 1.217244 GGGCTCTGCATTGCAAAGG 59.783 57.895 13.60 7.31 38.41 3.11
47 48 1.217244 GGGGCTCTGCATTGCAAAG 59.783 57.895 13.18 10.35 38.41 2.77
48 49 0.039472 TAGGGGCTCTGCATTGCAAA 59.961 50.000 13.18 0.00 38.41 3.68
49 50 0.259647 ATAGGGGCTCTGCATTGCAA 59.740 50.000 13.18 0.00 38.41 4.08
50 51 0.179009 GATAGGGGCTCTGCATTGCA 60.179 55.000 11.50 11.50 36.92 4.08
51 52 0.110104 AGATAGGGGCTCTGCATTGC 59.890 55.000 0.00 0.46 0.00 3.56
52 53 1.419012 TCAGATAGGGGCTCTGCATTG 59.581 52.381 0.00 0.00 39.98 2.82
53 54 1.811778 TCAGATAGGGGCTCTGCATT 58.188 50.000 0.00 0.00 39.98 3.56
54 55 1.698532 CTTCAGATAGGGGCTCTGCAT 59.301 52.381 0.00 0.00 39.98 3.96
55 56 1.126488 CTTCAGATAGGGGCTCTGCA 58.874 55.000 0.00 0.00 39.98 4.41
56 57 0.250252 GCTTCAGATAGGGGCTCTGC 60.250 60.000 0.00 0.00 39.98 4.26
57 58 1.126488 TGCTTCAGATAGGGGCTCTG 58.874 55.000 0.00 0.00 41.23 3.35
58 59 1.127343 GTGCTTCAGATAGGGGCTCT 58.873 55.000 0.00 0.00 0.00 4.09
59 60 0.107643 GGTGCTTCAGATAGGGGCTC 59.892 60.000 0.00 0.00 0.00 4.70
60 61 0.327000 AGGTGCTTCAGATAGGGGCT 60.327 55.000 0.00 0.00 0.00 5.19
61 62 1.424638 TAGGTGCTTCAGATAGGGGC 58.575 55.000 0.00 0.00 0.00 5.80
62 63 3.260380 CAGATAGGTGCTTCAGATAGGGG 59.740 52.174 0.00 0.00 0.00 4.79
63 64 4.021544 GTCAGATAGGTGCTTCAGATAGGG 60.022 50.000 0.00 0.00 0.00 3.53
64 65 4.021544 GGTCAGATAGGTGCTTCAGATAGG 60.022 50.000 0.00 0.00 0.00 2.57
65 66 4.320861 CGGTCAGATAGGTGCTTCAGATAG 60.321 50.000 0.00 0.00 0.00 2.08
66 67 3.570125 CGGTCAGATAGGTGCTTCAGATA 59.430 47.826 0.00 0.00 0.00 1.98
67 68 2.363680 CGGTCAGATAGGTGCTTCAGAT 59.636 50.000 0.00 0.00 0.00 2.90
68 69 1.751351 CGGTCAGATAGGTGCTTCAGA 59.249 52.381 0.00 0.00 0.00 3.27
69 70 1.202463 CCGGTCAGATAGGTGCTTCAG 60.202 57.143 0.00 0.00 0.00 3.02
70 71 0.824109 CCGGTCAGATAGGTGCTTCA 59.176 55.000 0.00 0.00 0.00 3.02
71 72 0.824759 ACCGGTCAGATAGGTGCTTC 59.175 55.000 0.00 0.00 36.81 3.86
72 73 1.066143 CAACCGGTCAGATAGGTGCTT 60.066 52.381 8.04 0.00 38.44 3.91
73 74 0.537188 CAACCGGTCAGATAGGTGCT 59.463 55.000 8.04 0.00 38.44 4.40
74 75 0.535335 TCAACCGGTCAGATAGGTGC 59.465 55.000 8.04 0.00 38.44 5.01
75 76 1.548719 TGTCAACCGGTCAGATAGGTG 59.451 52.381 8.04 0.00 38.44 4.00
76 77 1.933021 TGTCAACCGGTCAGATAGGT 58.067 50.000 8.04 0.00 40.50 3.08
77 78 2.893637 CTTGTCAACCGGTCAGATAGG 58.106 52.381 8.04 4.44 0.00 2.57
78 79 2.271800 GCTTGTCAACCGGTCAGATAG 58.728 52.381 8.04 11.78 0.00 2.08
79 80 1.066430 GGCTTGTCAACCGGTCAGATA 60.066 52.381 8.04 4.78 0.00 1.98
80 81 0.321653 GGCTTGTCAACCGGTCAGAT 60.322 55.000 8.04 0.00 0.00 2.90
81 82 1.070786 GGCTTGTCAACCGGTCAGA 59.929 57.895 8.04 6.58 0.00 3.27
82 83 1.966451 GGGCTTGTCAACCGGTCAG 60.966 63.158 8.04 3.63 0.00 3.51
83 84 2.112297 GGGCTTGTCAACCGGTCA 59.888 61.111 8.04 0.00 0.00 4.02
84 85 2.671963 GGGGCTTGTCAACCGGTC 60.672 66.667 8.04 0.00 0.00 4.79
85 86 4.636435 CGGGGCTTGTCAACCGGT 62.636 66.667 0.00 0.00 42.48 5.28
86 87 3.622060 ATCGGGGCTTGTCAACCGG 62.622 63.158 11.84 0.00 45.97 5.28
91 92 1.259142 TTACGGATCGGGGCTTGTCA 61.259 55.000 5.18 0.00 0.00 3.58
94 95 1.523032 GGTTACGGATCGGGGCTTG 60.523 63.158 5.18 0.00 0.00 4.01
97 98 3.472726 TGGGTTACGGATCGGGGC 61.473 66.667 5.18 0.00 0.00 5.80
123 124 0.907704 ATGGGTTGGGACGTCAGCTA 60.908 55.000 18.91 4.95 0.00 3.32
124 125 0.907704 TATGGGTTGGGACGTCAGCT 60.908 55.000 18.91 0.00 0.00 4.24
125 126 0.035820 TTATGGGTTGGGACGTCAGC 60.036 55.000 18.91 6.45 0.00 4.26
126 127 2.561569 GATTATGGGTTGGGACGTCAG 58.438 52.381 18.91 0.00 0.00 3.51
127 128 1.210967 GGATTATGGGTTGGGACGTCA 59.789 52.381 18.91 0.00 0.00 4.35
128 129 1.210967 TGGATTATGGGTTGGGACGTC 59.789 52.381 7.13 7.13 0.00 4.34
129 130 1.211949 CTGGATTATGGGTTGGGACGT 59.788 52.381 0.00 0.00 0.00 4.34
131 132 2.654863 CACTGGATTATGGGTTGGGAC 58.345 52.381 0.00 0.00 0.00 4.46
132 133 1.568597 CCACTGGATTATGGGTTGGGA 59.431 52.381 0.00 0.00 31.83 4.37
133 134 1.287739 ACCACTGGATTATGGGTTGGG 59.712 52.381 0.71 0.00 40.59 4.12
174 176 3.161866 TCTAGCCCCGCAAAAAGAAATT 58.838 40.909 0.00 0.00 0.00 1.82
175 177 2.802719 TCTAGCCCCGCAAAAAGAAAT 58.197 42.857 0.00 0.00 0.00 2.17
268 272 0.250513 CCACTTAGGACAGGCACTCC 59.749 60.000 0.00 0.00 41.22 3.85
284 288 7.552687 TGGTATGTCTTCATTTTGATAGTCCAC 59.447 37.037 0.00 0.00 35.70 4.02
286 290 8.506168 TTGGTATGTCTTCATTTTGATAGTCC 57.494 34.615 0.00 0.00 35.70 3.85
289 293 7.128331 CGCTTGGTATGTCTTCATTTTGATAG 58.872 38.462 0.00 0.00 35.70 2.08
290 294 6.597672 ACGCTTGGTATGTCTTCATTTTGATA 59.402 34.615 0.00 0.00 35.70 2.15
405 416 6.090483 TCAGAAAGTCTACTCCAAGTCAAG 57.910 41.667 0.00 0.00 0.00 3.02
424 479 2.979678 AGGGTTAAGCTGGAAGTTCAGA 59.020 45.455 5.01 0.00 36.93 3.27
457 512 3.082548 TGGAGTTCAGGAAGTCTACTCG 58.917 50.000 14.60 0.00 39.92 4.18
471 527 0.813821 GGGATTGCAAGCTGGAGTTC 59.186 55.000 15.27 0.00 0.00 3.01
476 532 2.353357 TATCAGGGATTGCAAGCTGG 57.647 50.000 15.27 4.65 0.00 4.85
478 534 3.393609 TCAGATATCAGGGATTGCAAGCT 59.606 43.478 15.27 0.00 0.00 3.74
479 535 3.748083 TCAGATATCAGGGATTGCAAGC 58.252 45.455 6.04 6.04 0.00 4.01
480 536 5.183331 CCATTCAGATATCAGGGATTGCAAG 59.817 44.000 4.94 0.00 0.00 4.01
481 537 5.074804 CCATTCAGATATCAGGGATTGCAA 58.925 41.667 0.00 0.00 0.00 4.08
483 539 3.442977 GCCATTCAGATATCAGGGATTGC 59.557 47.826 5.32 1.21 0.00 3.56
484 540 4.919793 AGCCATTCAGATATCAGGGATTG 58.080 43.478 5.32 6.30 0.00 2.67
560 837 1.337703 GGCATGAAGTGTGTGCTCAAA 59.662 47.619 0.00 0.00 38.83 2.69
562 839 0.109153 AGGCATGAAGTGTGTGCTCA 59.891 50.000 0.00 0.00 38.83 4.26
622 922 3.571590 ACACCACCTTCCATTTAAGCAA 58.428 40.909 0.00 0.00 0.00 3.91
627 927 2.719705 AGGGAACACCACCTTCCATTTA 59.280 45.455 0.00 0.00 43.89 1.40
635 935 1.072930 AGGGAAGGGAACACCACCT 60.073 57.895 0.00 0.00 43.89 4.00
684 984 1.302033 CTCCTCTGTTTGCGGCACT 60.302 57.895 0.05 0.00 0.00 4.40
765 1145 2.095364 CCATCTGCTCAGAACTGCAAAC 60.095 50.000 3.47 0.00 41.36 2.93
858 1344 2.899900 AGCATATATCGAAGCTCCACCA 59.100 45.455 0.00 0.00 30.05 4.17
1016 1535 0.904649 ATGACAAGGCAGATCCACGA 59.095 50.000 0.00 0.00 37.29 4.35
1062 1581 3.386237 GGCACGAGCAGGAGGAGT 61.386 66.667 7.26 0.00 44.61 3.85
1175 1709 0.478072 TGCTGCTTTCTTTGGGAGGA 59.522 50.000 0.00 0.00 0.00 3.71
1296 1842 2.045926 GCGGTCACCAAGCATCCT 60.046 61.111 0.00 0.00 0.00 3.24
1327 1873 1.146041 TGCTCGTGCAGTGTTCCTT 59.854 52.632 8.30 0.00 45.31 3.36
1491 2055 5.801350 TCAGAAGTGTGAACAACAAGAAG 57.199 39.130 0.00 0.00 41.57 2.85
1687 2260 0.886563 AGTCGACCACCTTTCCTACG 59.113 55.000 13.01 0.00 0.00 3.51
1757 2330 0.538057 AATATGCAGCATGGGGTCCG 60.538 55.000 18.81 0.00 35.86 4.79
1772 2345 9.717942 GAAGTTCAGATACCAAGCTGATAATAT 57.282 33.333 0.00 0.00 46.92 1.28
1896 2475 1.228154 AAGTTCTTGGGTGGTCGCC 60.228 57.895 0.00 0.00 0.00 5.54
1940 2521 1.280133 CTCCAACCAAGGATCTGCTGA 59.720 52.381 0.00 0.00 36.99 4.26
1942 2523 1.661463 TCTCCAACCAAGGATCTGCT 58.339 50.000 0.00 0.00 36.99 4.24
1960 2541 0.320771 ACTGAAGTCGTGGTGCCATC 60.321 55.000 0.00 0.00 0.00 3.51
2025 2615 2.092646 CACATATTTTGGGACCGAGGGA 60.093 50.000 0.00 0.00 0.00 4.20
2026 2616 2.297701 CACATATTTTGGGACCGAGGG 58.702 52.381 0.00 0.00 0.00 4.30
2027 2617 2.943033 GACACATATTTTGGGACCGAGG 59.057 50.000 0.00 0.00 31.13 4.63
2028 2618 3.873910 AGACACATATTTTGGGACCGAG 58.126 45.455 0.00 0.00 31.13 4.63
2029 2619 3.992943 AGACACATATTTTGGGACCGA 57.007 42.857 0.00 0.00 31.13 4.69
2030 2620 5.163693 GGTTAAGACACATATTTTGGGACCG 60.164 44.000 0.00 0.00 31.13 4.79
2031 2621 5.949952 AGGTTAAGACACATATTTTGGGACC 59.050 40.000 0.00 0.00 31.13 4.46
2032 2622 7.462571 AAGGTTAAGACACATATTTTGGGAC 57.537 36.000 0.00 0.00 31.13 4.46
2033 2623 8.387813 ACTAAGGTTAAGACACATATTTTGGGA 58.612 33.333 0.00 0.00 31.13 4.37
2034 2624 8.575649 ACTAAGGTTAAGACACATATTTTGGG 57.424 34.615 0.00 0.00 33.70 4.12
2043 2633 9.398538 ACAAAATTGTACTAAGGTTAAGACACA 57.601 29.630 0.00 0.00 40.16 3.72
2070 2660 8.827677 GTGTCTCAAATTTGTACTAACTTCAGT 58.172 33.333 17.47 0.00 0.00 3.41
2071 2661 9.046296 AGTGTCTCAAATTTGTACTAACTTCAG 57.954 33.333 17.47 4.26 0.00 3.02
2072 2662 8.958119 AGTGTCTCAAATTTGTACTAACTTCA 57.042 30.769 17.47 3.85 0.00 3.02
2079 2669 9.965824 CCAAAATAAGTGTCTCAAATTTGTACT 57.034 29.630 17.47 13.89 0.00 2.73
2080 2670 9.959749 TCCAAAATAAGTGTCTCAAATTTGTAC 57.040 29.630 17.47 16.14 0.00 2.90
2081 2671 9.959749 GTCCAAAATAAGTGTCTCAAATTTGTA 57.040 29.630 17.47 5.12 0.00 2.41
2082 2672 7.647715 CGTCCAAAATAAGTGTCTCAAATTTGT 59.352 33.333 17.47 0.00 0.00 2.83
2083 2673 7.114811 CCGTCCAAAATAAGTGTCTCAAATTTG 59.885 37.037 12.15 12.15 0.00 2.32
2084 2674 7.013846 TCCGTCCAAAATAAGTGTCTCAAATTT 59.986 33.333 0.00 0.00 0.00 1.82
2085 2675 6.488683 TCCGTCCAAAATAAGTGTCTCAAATT 59.511 34.615 0.00 0.00 0.00 1.82
2086 2676 6.001460 TCCGTCCAAAATAAGTGTCTCAAAT 58.999 36.000 0.00 0.00 0.00 2.32
2087 2677 5.369833 TCCGTCCAAAATAAGTGTCTCAAA 58.630 37.500 0.00 0.00 0.00 2.69
2088 2678 4.963373 TCCGTCCAAAATAAGTGTCTCAA 58.037 39.130 0.00 0.00 0.00 3.02
2089 2679 4.562757 CCTCCGTCCAAAATAAGTGTCTCA 60.563 45.833 0.00 0.00 0.00 3.27
2090 2680 3.933332 CCTCCGTCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
2091 2681 3.307480 CCCTCCGTCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
2092 2682 3.007635 CCCTCCGTCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
2093 2683 2.640826 TCCCTCCGTCCAAAATAAGTGT 59.359 45.455 0.00 0.00 0.00 3.55
2094 2684 3.270877 CTCCCTCCGTCCAAAATAAGTG 58.729 50.000 0.00 0.00 0.00 3.16
2095 2685 2.910977 ACTCCCTCCGTCCAAAATAAGT 59.089 45.455 0.00 0.00 0.00 2.24
2096 2686 3.629142 ACTCCCTCCGTCCAAAATAAG 57.371 47.619 0.00 0.00 0.00 1.73
2097 2687 4.098894 AGTACTCCCTCCGTCCAAAATAA 58.901 43.478 0.00 0.00 0.00 1.40
2098 2688 3.716431 AGTACTCCCTCCGTCCAAAATA 58.284 45.455 0.00 0.00 0.00 1.40
2099 2689 2.547990 AGTACTCCCTCCGTCCAAAAT 58.452 47.619 0.00 0.00 0.00 1.82
2100 2690 2.019807 AGTACTCCCTCCGTCCAAAA 57.980 50.000 0.00 0.00 0.00 2.44
2101 2691 2.905415 TAGTACTCCCTCCGTCCAAA 57.095 50.000 0.00 0.00 0.00 3.28
2102 2692 3.393426 AATAGTACTCCCTCCGTCCAA 57.607 47.619 0.00 0.00 0.00 3.53
2103 2693 3.393426 AAATAGTACTCCCTCCGTCCA 57.607 47.619 0.00 0.00 0.00 4.02
2104 2694 4.750021 AAAAATAGTACTCCCTCCGTCC 57.250 45.455 0.00 0.00 0.00 4.79
2177 2889 3.386726 TCACTCAACGGAAAGAAGAAGGA 59.613 43.478 0.00 0.00 0.00 3.36
2182 2894 5.007626 TGAATTGTCACTCAACGGAAAGAAG 59.992 40.000 0.00 0.00 38.97 2.85
2183 2895 4.878971 TGAATTGTCACTCAACGGAAAGAA 59.121 37.500 0.00 0.00 38.97 2.52
2201 2915 9.933723 AAGTTCTTTTTAATAGCTGCATGAATT 57.066 25.926 1.02 0.00 0.00 2.17
2295 3451 7.383102 ACACTAAATCAACTAGCATGAAAGG 57.617 36.000 0.00 0.00 0.00 3.11
2304 3460 9.366216 TGCAACTATGTACACTAAATCAACTAG 57.634 33.333 0.00 0.00 0.00 2.57
2305 3461 9.713713 TTGCAACTATGTACACTAAATCAACTA 57.286 29.630 0.00 0.00 0.00 2.24
2318 3474 5.631026 CAAGTGGACATTGCAACTATGTAC 58.369 41.667 0.00 3.80 36.41 2.90
2341 3497 6.049790 AGATCTAAGTACCGATTTTCCTTGC 58.950 40.000 0.00 0.00 0.00 4.01
2396 3723 7.652507 GTCTTATATTTAGAAACGGAGGGAGTG 59.347 40.741 0.00 0.00 0.00 3.51
2419 3746 7.540299 CCTCTACTGAAATCTCTAAAACGTCT 58.460 38.462 0.00 0.00 0.00 4.18
2423 3750 8.688151 TCTAGCCTCTACTGAAATCTCTAAAAC 58.312 37.037 0.00 0.00 0.00 2.43
2427 3754 9.733556 CTTATCTAGCCTCTACTGAAATCTCTA 57.266 37.037 0.00 0.00 0.00 2.43
2429 3756 7.668052 TCCTTATCTAGCCTCTACTGAAATCTC 59.332 40.741 0.00 0.00 0.00 2.75
2431 3758 7.768807 TCCTTATCTAGCCTCTACTGAAATC 57.231 40.000 0.00 0.00 0.00 2.17
2432 3759 7.732593 ACATCCTTATCTAGCCTCTACTGAAAT 59.267 37.037 0.00 0.00 0.00 2.17
2434 3761 6.615617 ACATCCTTATCTAGCCTCTACTGAA 58.384 40.000 0.00 0.00 0.00 3.02
2435 3762 6.207509 ACATCCTTATCTAGCCTCTACTGA 57.792 41.667 0.00 0.00 0.00 3.41
2436 3763 9.860650 ATATACATCCTTATCTAGCCTCTACTG 57.139 37.037 0.00 0.00 0.00 2.74
2441 3768 8.995220 CGTCTATATACATCCTTATCTAGCCTC 58.005 40.741 0.00 0.00 0.00 4.70
2463 3790 7.176340 ACTGAACCTACACTCTAAAATACGTCT 59.824 37.037 0.00 0.00 0.00 4.18
2466 3793 7.310664 TGACTGAACCTACACTCTAAAATACG 58.689 38.462 0.00 0.00 0.00 3.06
2475 4872 4.757149 AGCAAAATGACTGAACCTACACTC 59.243 41.667 0.00 0.00 0.00 3.51
2488 4885 2.420022 ACTGCATACGGAGCAAAATGAC 59.580 45.455 0.00 0.00 42.17 3.06
2698 6235 4.021544 TCACTTTACCAATTGAACATGGGC 60.022 41.667 7.12 0.00 41.17 5.36
2791 6335 2.350388 CCAATTTCTACAACAACGCGCT 60.350 45.455 5.73 0.00 0.00 5.92
2804 6348 9.590451 CATTCAAGTATATTGCAACCAATTTCT 57.410 29.630 0.00 0.00 41.68 2.52
2873 6417 9.261180 TCGTATGCATTTTAAATTTTGGTTCAA 57.739 25.926 3.54 0.00 0.00 2.69
3010 6558 4.086457 GGAAAAGACCCACCATTACATGT 58.914 43.478 2.69 2.69 0.00 3.21
3044 6592 3.593048 AGGCCCACCTCAACATGT 58.407 55.556 0.00 0.00 46.34 3.21
3058 6606 9.686683 ACTATACAATTATGAATGGGATAAGGC 57.313 33.333 0.00 0.00 0.00 4.35
3066 6614 8.239314 GCCACATCACTATACAATTATGAATGG 58.761 37.037 0.00 0.00 34.80 3.16
3103 6651 7.998964 CACCCCCACTAACTTAATTATCTCAAT 59.001 37.037 0.00 0.00 0.00 2.57
3273 6835 7.432545 CCATACAACGAAACAAATAACACACAA 59.567 33.333 0.00 0.00 0.00 3.33
3428 7025 2.358957 TGTGGCAGCTTGATCATGTAC 58.641 47.619 10.05 4.53 0.00 2.90
3709 8377 6.154203 AGACACATCATATCACGATTCAGT 57.846 37.500 0.00 0.00 0.00 3.41
3764 8453 8.394971 TGCCATTGTAGATATTGGAACTTATG 57.605 34.615 0.00 0.00 0.00 1.90
3800 8489 9.671279 CATAGGTTGCTATTACATGGATGAATA 57.329 33.333 0.00 0.00 0.00 1.75
3809 8500 5.922960 TTCCCCATAGGTTGCTATTACAT 57.077 39.130 0.00 0.00 36.75 2.29
3828 8519 1.333791 CGTGTGACTTCGCCTTTTTCC 60.334 52.381 0.00 0.00 0.00 3.13
3924 8632 8.573035 GGTTGAGATACATTTGTAAAACTGGAA 58.427 33.333 0.00 0.00 33.76 3.53
4021 8732 1.002792 GTTTCAGTCCACTGCCGTTTC 60.003 52.381 1.49 0.00 43.46 2.78
4051 8790 6.899393 TTCCTTTTCAGTGCATTACATCTT 57.101 33.333 0.00 0.00 0.00 2.40
4095 8835 7.968405 GGACTTTTGGAATATACAACATCACAC 59.032 37.037 0.00 0.00 0.00 3.82
4111 8870 3.116939 TCCATGGGAAAAGGACTTTTGGA 60.117 43.478 13.02 11.74 42.26 3.53
4267 9046 7.520119 AAGTTCAACTTCGTTTTTGAATTCC 57.480 32.000 0.00 0.00 42.24 3.01
4279 9058 7.642194 TGTAGTTTTGCAATAAGTTCAACTTCG 59.358 33.333 5.92 0.00 39.51 3.79
4444 9227 6.183360 TGCATTTTATAGCATGGACGAAACAT 60.183 34.615 0.00 0.00 35.51 2.71
4470 9253 5.111989 TGCTAACATCTGCACATTAGAGAC 58.888 41.667 5.95 0.00 33.94 3.36
4501 9284 7.872483 ACACATCTTTTATTCCAATCAACCAAC 59.128 33.333 0.00 0.00 0.00 3.77
4835 9653 2.033407 CGAGTAAATGCCTTCAGATGCG 60.033 50.000 0.00 0.00 0.00 4.73
4955 9773 3.119849 GCAAAATGCTCACGTATCCAAGT 60.120 43.478 0.00 0.00 40.96 3.16
5130 10018 3.635373 TGTTAATGTACCTCCTAGCCTCG 59.365 47.826 0.00 0.00 0.00 4.63
5196 10084 3.682377 ACATCGCAACGACATTTGACATA 59.318 39.130 0.00 0.00 39.18 2.29
5402 10298 4.520492 AGCACTTCCATTAACAACTGAAGG 59.480 41.667 0.00 0.00 37.37 3.46
5403 10299 5.695851 AGCACTTCCATTAACAACTGAAG 57.304 39.130 0.00 0.00 38.65 3.02
5404 10300 5.181245 GCTAGCACTTCCATTAACAACTGAA 59.819 40.000 10.63 0.00 0.00 3.02
5405 10301 4.695455 GCTAGCACTTCCATTAACAACTGA 59.305 41.667 10.63 0.00 0.00 3.41
5406 10302 4.455533 TGCTAGCACTTCCATTAACAACTG 59.544 41.667 14.93 0.00 0.00 3.16
5407 10303 4.651778 TGCTAGCACTTCCATTAACAACT 58.348 39.130 14.93 0.00 0.00 3.16
5408 10304 5.371115 TTGCTAGCACTTCCATTAACAAC 57.629 39.130 19.17 0.00 0.00 3.32
5409 10305 5.709631 TGATTGCTAGCACTTCCATTAACAA 59.290 36.000 19.17 0.00 0.00 2.83
5454 10350 2.187958 TGACAGGCTGGTATGCTAACT 58.812 47.619 20.34 0.00 0.00 2.24
5457 10353 5.567037 AAATATGACAGGCTGGTATGCTA 57.433 39.130 20.34 2.01 0.00 3.49
5458 10354 4.443978 AAATATGACAGGCTGGTATGCT 57.556 40.909 20.34 0.00 0.00 3.79
5460 10356 4.889409 ACCAAAATATGACAGGCTGGTATG 59.111 41.667 20.34 5.97 33.99 2.39
5461 10357 5.129368 ACCAAAATATGACAGGCTGGTAT 57.871 39.130 20.34 14.40 33.99 2.73
5462 10358 4.584638 ACCAAAATATGACAGGCTGGTA 57.415 40.909 20.34 7.47 33.99 3.25
5463 10359 3.456380 ACCAAAATATGACAGGCTGGT 57.544 42.857 20.34 6.99 0.00 4.00
5464 10360 4.019174 AGAACCAAAATATGACAGGCTGG 58.981 43.478 20.34 0.00 0.00 4.85
5471 10391 7.630242 TCCTTCATCAGAACCAAAATATGAC 57.370 36.000 0.00 0.00 0.00 3.06
5519 10443 1.293498 CTACGGACACCAGCAAGCT 59.707 57.895 0.00 0.00 0.00 3.74
5624 10585 7.042797 TCCTTTGGATTTCAAGTCTTCTTTG 57.957 36.000 0.00 0.00 36.62 2.77
5651 10612 5.494724 TGCAGCTACTTTCAGATTGAGATT 58.505 37.500 0.00 0.00 0.00 2.40
5652 10613 5.095145 TGCAGCTACTTTCAGATTGAGAT 57.905 39.130 0.00 0.00 0.00 2.75
5653 10614 4.541973 TGCAGCTACTTTCAGATTGAGA 57.458 40.909 0.00 0.00 0.00 3.27
5654 10615 5.814764 AATGCAGCTACTTTCAGATTGAG 57.185 39.130 0.00 0.00 0.00 3.02
5854 10894 2.871637 GCAGCAATGAGTGAGTGGTACA 60.872 50.000 0.00 0.00 0.00 2.90
5859 10899 3.593096 TCTTAGCAGCAATGAGTGAGTG 58.407 45.455 0.00 0.00 0.00 3.51
5860 10900 3.969287 TCTTAGCAGCAATGAGTGAGT 57.031 42.857 0.00 0.00 0.00 3.41
5861 10901 3.999001 TGTTCTTAGCAGCAATGAGTGAG 59.001 43.478 0.00 0.00 0.00 3.51
5862 10902 3.999001 CTGTTCTTAGCAGCAATGAGTGA 59.001 43.478 0.00 0.00 0.00 3.41
5863 10903 3.126514 CCTGTTCTTAGCAGCAATGAGTG 59.873 47.826 0.00 0.00 32.93 3.51
6008 11049 9.869757 ACAATTCTGCAGTTACTTAAAAACTTT 57.130 25.926 14.67 0.00 34.99 2.66
6075 11129 3.041508 AGCCTACTGTTTTCCTCGAAC 57.958 47.619 0.00 0.00 0.00 3.95
6112 11166 8.575565 TCTCGTCTTCTTTGCATTACATATAC 57.424 34.615 0.00 0.00 0.00 1.47
6140 11194 1.521450 CCAACTTCAGGGCTGCACAG 61.521 60.000 4.01 0.00 0.00 3.66
6149 11203 1.584380 GCTGCTGCTCCAACTTCAGG 61.584 60.000 8.53 0.00 36.03 3.86
6170 11224 4.333926 GTGAGTGCTTTTTATCTAGCCTGG 59.666 45.833 0.00 0.00 36.56 4.45
6176 11233 8.094548 ACTGTACATGTGAGTGCTTTTTATCTA 58.905 33.333 9.11 0.00 0.00 1.98
6195 11252 4.017407 ACTCCCAGATTAGAGGACTGTACA 60.017 45.833 0.00 0.00 34.27 2.90
6196 11253 4.538738 ACTCCCAGATTAGAGGACTGTAC 58.461 47.826 0.00 0.00 34.27 2.90
6197 11254 4.883021 ACTCCCAGATTAGAGGACTGTA 57.117 45.455 0.00 0.00 34.27 2.74
6198 11255 3.767309 ACTCCCAGATTAGAGGACTGT 57.233 47.619 0.00 0.00 34.27 3.55
6226 11283 2.630098 AGTTCTGCACAGAGCTAACAGA 59.370 45.455 14.45 0.00 45.31 3.41
6229 11286 2.760374 ACAGTTCTGCACAGAGCTAAC 58.240 47.619 15.44 4.65 45.37 2.34
6234 11291 4.993584 AGTTATCAACAGTTCTGCACAGAG 59.006 41.667 0.00 0.00 38.88 3.35
6237 11294 5.007626 GTCAAGTTATCAACAGTTCTGCACA 59.992 40.000 0.00 0.00 0.00 4.57
6238 11295 5.007626 TGTCAAGTTATCAACAGTTCTGCAC 59.992 40.000 0.00 0.00 0.00 4.57
6275 11332 5.244402 AGCAAACTGAATGGTTCATGATTGA 59.756 36.000 0.00 0.00 39.30 2.57
6276 11333 5.475719 AGCAAACTGAATGGTTCATGATTG 58.524 37.500 0.00 0.00 39.30 2.67
6291 11348 2.223805 GGAAACAAGGGTCAGCAAACTG 60.224 50.000 0.00 0.00 45.95 3.16
6347 11404 1.227380 CGGTGAGCCCAGATACAGC 60.227 63.158 0.00 0.00 0.00 4.40
6348 11405 1.227380 GCGGTGAGCCCAGATACAG 60.227 63.158 0.00 0.00 40.81 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.