Multiple sequence alignment - TraesCS3B01G555300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G555300 chr3B 100.000 5610 0 0 1 5610 789054108 789059717 0.000000e+00 10360
1 TraesCS3B01G555300 chr3B 89.207 2548 176 45 1576 4099 788983505 788985977 0.000000e+00 3090
2 TraesCS3B01G555300 chr3B 89.665 2206 153 27 1917 4099 788935642 788937795 0.000000e+00 2741
3 TraesCS3B01G555300 chr3B 85.189 1033 113 24 880 1893 788932934 788933945 0.000000e+00 1024
4 TraesCS3B01G555300 chr3B 86.207 899 116 8 3201 4095 789183336 789182442 0.000000e+00 966
5 TraesCS3B01G555300 chr3B 83.995 731 91 17 880 1592 788982325 788983047 0.000000e+00 678
6 TraesCS3B01G555300 chr3B 81.919 719 110 11 4280 4996 788986000 788986700 1.740000e-164 590
7 TraesCS3B01G555300 chr3B 80.389 719 107 17 4280 4996 788937818 788938504 3.000000e-142 516
8 TraesCS3B01G555300 chr3D 90.312 2147 132 27 16 2110 590136919 590139041 0.000000e+00 2743
9 TraesCS3B01G555300 chr3D 91.667 1884 116 19 2220 4078 590148182 590150049 0.000000e+00 2571
10 TraesCS3B01G555300 chr3D 89.614 2022 144 24 2102 4099 590092926 590090947 0.000000e+00 2510
11 TraesCS3B01G555300 chr3D 87.735 1329 132 19 4276 5583 590150070 590151388 0.000000e+00 1522
12 TraesCS3B01G555300 chr3D 86.000 1200 106 27 882 2070 590094075 590092927 0.000000e+00 1229
13 TraesCS3B01G555300 chr3D 87.173 842 98 8 3253 4087 590043008 590043846 0.000000e+00 948
14 TraesCS3B01G555300 chr3D 85.939 889 113 10 3213 4095 590221819 590220937 0.000000e+00 939
15 TraesCS3B01G555300 chr3D 83.356 727 99 14 4280 5003 590090924 590090217 0.000000e+00 652
16 TraesCS3B01G555300 chr3D 82.461 382 57 4 4292 4663 590043889 590044270 5.420000e-85 326
17 TraesCS3B01G555300 chr3D 80.263 456 66 14 2585 3026 588979886 588979441 7.010000e-84 322
18 TraesCS3B01G555300 chr3D 76.947 642 94 32 2512 3137 590222599 590221996 3.260000e-82 316
19 TraesCS3B01G555300 chr3D 82.597 362 52 8 4313 4663 590220887 590220526 5.460000e-80 309
20 TraesCS3B01G555300 chr3D 90.741 162 15 0 4118 4279 397162706 397162545 3.400000e-52 217
21 TraesCS3B01G555300 chr3D 90.683 161 15 0 4118 4278 520636983 520636823 1.220000e-51 215
22 TraesCS3B01G555300 chr3D 94.690 113 5 1 2108 2220 590139199 590139310 2.080000e-39 174
23 TraesCS3B01G555300 chr3D 89.535 86 8 1 2045 2129 574859877 574859962 2.140000e-19 108
24 TraesCS3B01G555300 chr3A 88.805 1992 149 43 2142 4094 719836826 719838782 0.000000e+00 2375
25 TraesCS3B01G555300 chr3A 85.794 1253 122 28 807 2041 719835596 719836810 0.000000e+00 1277
26 TraesCS3B01G555300 chr3A 86.532 891 104 14 3213 4095 719939588 719938706 0.000000e+00 966
27 TraesCS3B01G555300 chr3A 90.023 431 38 2 4276 4705 719838806 719839232 2.280000e-153 553
28 TraesCS3B01G555300 chr3A 83.508 382 51 6 4293 4663 719779420 719779800 4.160000e-91 346
29 TraesCS3B01G555300 chr3A 77.586 638 91 29 2516 3137 719940366 719939765 6.960000e-89 339
30 TraesCS3B01G555300 chr3A 83.425 362 49 8 4313 4663 719938656 719938295 5.420000e-85 326
31 TraesCS3B01G555300 chr3A 86.496 274 34 3 2786 3059 719995369 719995639 1.180000e-76 298
32 TraesCS3B01G555300 chr3A 89.362 94 9 1 2037 2129 437863463 437863556 3.550000e-22 117
33 TraesCS3B01G555300 chr7D 90.798 163 15 0 4118 4280 141292672 141292834 9.460000e-53 219
34 TraesCS3B01G555300 chr4A 90.741 162 14 1 4118 4278 176016671 176016832 1.220000e-51 215
35 TraesCS3B01G555300 chr4A 86.022 93 11 2 2038 2128 614739720 614739812 1.290000e-16 99
36 TraesCS3B01G555300 chr6B 90.244 164 15 1 4117 4279 376888766 376888603 4.400000e-51 213
37 TraesCS3B01G555300 chr1D 89.759 166 17 0 4113 4278 73732251 73732416 4.400000e-51 213
38 TraesCS3B01G555300 chr7B 88.333 180 16 5 4118 4295 353650524 353650348 1.580000e-50 211
39 TraesCS3B01G555300 chr7A 89.820 167 13 3 4117 4280 242438102 242437937 1.580000e-50 211
40 TraesCS3B01G555300 chr2D 88.889 171 18 1 4109 4278 305514860 305515030 5.700000e-50 209
41 TraesCS3B01G555300 chr2D 88.636 88 9 1 2045 2131 564674118 564674205 7.690000e-19 106
42 TraesCS3B01G555300 chr2D 88.235 85 9 1 2045 2128 617523597 617523681 3.580000e-17 100
43 TraesCS3B01G555300 chr2B 87.356 87 10 1 2045 2130 134045457 134045543 1.290000e-16 99


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G555300 chr3B 789054108 789059717 5609 False 10360.000000 10360 100.000000 1 5610 1 chr3B.!!$F1 5609
1 TraesCS3B01G555300 chr3B 788982325 788986700 4375 False 1452.666667 3090 85.040333 880 4996 3 chr3B.!!$F3 4116
2 TraesCS3B01G555300 chr3B 788932934 788938504 5570 False 1427.000000 2741 85.081000 880 4996 3 chr3B.!!$F2 4116
3 TraesCS3B01G555300 chr3B 789182442 789183336 894 True 966.000000 966 86.207000 3201 4095 1 chr3B.!!$R1 894
4 TraesCS3B01G555300 chr3D 590148182 590151388 3206 False 2046.500000 2571 89.701000 2220 5583 2 chr3D.!!$F4 3363
5 TraesCS3B01G555300 chr3D 590090217 590094075 3858 True 1463.666667 2510 86.323333 882 5003 3 chr3D.!!$R4 4121
6 TraesCS3B01G555300 chr3D 590136919 590139310 2391 False 1458.500000 2743 92.501000 16 2220 2 chr3D.!!$F3 2204
7 TraesCS3B01G555300 chr3D 590043008 590044270 1262 False 637.000000 948 84.817000 3253 4663 2 chr3D.!!$F2 1410
8 TraesCS3B01G555300 chr3D 590220526 590222599 2073 True 521.333333 939 81.827667 2512 4663 3 chr3D.!!$R5 2151
9 TraesCS3B01G555300 chr3A 719835596 719839232 3636 False 1401.666667 2375 88.207333 807 4705 3 chr3A.!!$F4 3898
10 TraesCS3B01G555300 chr3A 719938295 719940366 2071 True 543.666667 966 82.514333 2516 4663 3 chr3A.!!$R1 2147

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
679 712 0.108804 AGATACTGGCGTCGGTGTTG 60.109 55.0 12.83 0.00 33.86 3.33 F
718 751 0.253044 CCACGACCCTGTGATTCCAT 59.747 55.0 0.00 0.00 42.55 3.41 F
1128 1216 0.407139 AAGCCAACCTCATGCTCCTT 59.593 50.0 0.00 0.00 33.36 3.36 F
2412 4875 0.584876 GGAACGGTTCAAAGGTCACG 59.415 55.0 21.36 0.00 0.00 4.35 F
3324 5930 0.239347 CAGTCAAAAGGCTTGCCTCG 59.761 55.0 15.10 6.95 0.00 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2580 5055 0.736325 CGTGAGTTGCGTCCTAAGGG 60.736 60.0 0.00 0.00 0.00 3.95 R
2581 5056 1.352156 GCGTGAGTTGCGTCCTAAGG 61.352 60.0 0.00 0.00 0.00 2.69 R
2844 5334 0.676466 CGGTCTATTTGTGGCAGCCA 60.676 55.0 11.22 11.22 0.00 4.75 R
3674 6283 0.036388 TTGCTGGCCTTAAGGTCTCG 60.036 55.0 25.97 17.54 41.34 4.04 R
5301 7945 0.036164 AAACACACCGAGCATGGCTA 59.964 50.0 0.00 0.00 39.88 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 9.048446 ACTTCTGTACGTAAGAGCAAATTAAAA 57.952 29.630 12.51 0.00 43.62 1.52
60 61 7.464178 CGTTGTAGTTGTATGAAGTAGGAATGC 60.464 40.741 0.00 0.00 0.00 3.56
63 64 5.109903 AGTTGTATGAAGTAGGAATGCGAC 58.890 41.667 0.00 0.00 0.00 5.19
122 123 1.140452 CCTGTGCATCCAGTCTAGCAT 59.860 52.381 3.87 0.00 39.43 3.79
130 131 0.467384 CCAGTCTAGCATGGGACCAG 59.533 60.000 5.39 0.00 33.39 4.00
170 171 2.258726 TGCACTGCAGCAGCTTGAG 61.259 57.895 26.04 8.49 40.11 3.02
185 186 3.601443 CTTGAGTAGCAAGCCTGTACT 57.399 47.619 0.00 0.00 46.67 2.73
186 187 3.257393 CTTGAGTAGCAAGCCTGTACTG 58.743 50.000 0.00 0.00 46.67 2.74
226 227 3.375299 GCATGTCTACAGTTCAATGGGTC 59.625 47.826 0.00 0.00 0.00 4.46
242 243 5.937975 ATGGGTCCAAGGTTGAAATAATG 57.062 39.130 0.00 0.00 0.00 1.90
248 252 5.242838 GTCCAAGGTTGAAATAATGACACCA 59.757 40.000 0.00 0.00 0.00 4.17
253 257 7.865706 AGGTTGAAATAATGACACCATACTC 57.134 36.000 0.00 0.00 31.59 2.59
258 262 9.825109 TTGAAATAATGACACCATACTCGATAA 57.175 29.630 0.00 0.00 31.59 1.75
260 264 7.869016 AATAATGACACCATACTCGATAACG 57.131 36.000 0.00 0.00 35.07 3.18
279 283 7.271653 CGATAACGAAAGAAGGTATAGCATCTC 59.728 40.741 9.89 1.12 42.66 2.75
280 284 4.861210 ACGAAAGAAGGTATAGCATCTCG 58.139 43.478 9.89 12.13 0.00 4.04
285 289 7.096558 CGAAAGAAGGTATAGCATCTCGTTTAC 60.097 40.741 9.89 0.00 0.00 2.01
288 292 8.638629 AGAAGGTATAGCATCTCGTTTACTAT 57.361 34.615 3.91 0.00 0.00 2.12
295 299 8.749841 ATAGCATCTCGTTTACTATGATTGAC 57.250 34.615 0.00 0.00 0.00 3.18
299 303 7.222805 GCATCTCGTTTACTATGATTGACTGAA 59.777 37.037 0.00 0.00 0.00 3.02
326 330 6.808212 ACTCATATCAACAAGGAATTTTTGCG 59.192 34.615 4.17 0.00 0.00 4.85
335 339 2.362717 AGGAATTTTTGCGTTTTCGGGA 59.637 40.909 0.00 0.00 44.29 5.14
336 340 2.729360 GGAATTTTTGCGTTTTCGGGAG 59.271 45.455 0.00 0.00 44.29 4.30
337 341 3.377439 GAATTTTTGCGTTTTCGGGAGT 58.623 40.909 0.00 0.00 44.29 3.85
338 342 2.478547 TTTTTGCGTTTTCGGGAGTC 57.521 45.000 0.00 0.00 44.29 3.36
339 343 0.305313 TTTTGCGTTTTCGGGAGTCG 59.695 50.000 0.00 0.00 44.29 4.18
365 369 5.237779 TCACAAGGAACCTTAAAGTTAAGCG 59.762 40.000 5.75 2.67 38.99 4.68
371 375 5.911280 GGAACCTTAAAGTTAAGCGTGTTTC 59.089 40.000 5.45 1.23 38.99 2.78
388 392 2.982470 GTTTCGCTTGAGCAATTTGAGG 59.018 45.455 0.00 0.00 42.21 3.86
391 395 2.421073 TCGCTTGAGCAATTTGAGGATG 59.579 45.455 0.00 0.00 42.21 3.51
502 514 3.299977 TGCCGTGAGTGCTACCGT 61.300 61.111 0.00 0.00 0.00 4.83
550 563 9.119418 TCAACTTGTCTCATGAGTTATGAAAAA 57.881 29.630 21.92 2.71 44.84 1.94
581 594 2.568623 AACCGGAGCAAATCTGTCTT 57.431 45.000 9.46 0.00 31.71 3.01
582 595 2.568623 ACCGGAGCAAATCTGTCTTT 57.431 45.000 9.46 0.00 31.71 2.52
599 612 0.948678 TTTGAGCACCAACGGCTTAC 59.051 50.000 0.00 0.00 42.78 2.34
634 667 5.889219 TCAAAAACAACTTAAACCCGGTAC 58.111 37.500 0.00 0.00 0.00 3.34
649 682 1.808390 GTACACACCGACGGATGCC 60.808 63.158 23.38 8.85 0.00 4.40
650 683 2.276853 TACACACCGACGGATGCCA 61.277 57.895 23.38 7.24 0.00 4.92
651 684 2.495366 TACACACCGACGGATGCCAC 62.495 60.000 23.38 0.00 0.00 5.01
652 685 3.621805 ACACCGACGGATGCCACA 61.622 61.111 23.38 0.00 0.00 4.17
653 686 2.125147 CACCGACGGATGCCACAT 60.125 61.111 23.38 0.00 0.00 3.21
654 687 2.125147 ACCGACGGATGCCACATG 60.125 61.111 23.38 0.00 0.00 3.21
655 688 2.186644 CCGACGGATGCCACATGA 59.813 61.111 8.64 0.00 0.00 3.07
666 699 4.504514 GGATGCCACATGACATGAGATACT 60.505 45.833 22.19 2.11 0.00 2.12
679 712 0.108804 AGATACTGGCGTCGGTGTTG 60.109 55.000 12.83 0.00 33.86 3.33
689 722 0.782384 GTCGGTGTTGTCGTCATCAC 59.218 55.000 13.33 13.33 41.10 3.06
703 736 1.134431 TCATCACCCATCATGTCCACG 60.134 52.381 0.00 0.00 0.00 4.94
707 740 1.153168 CCCATCATGTCCACGACCC 60.153 63.158 0.00 0.00 0.00 4.46
718 751 0.253044 CCACGACCCTGTGATTCCAT 59.747 55.000 0.00 0.00 42.55 3.41
749 782 1.721133 CGAAACGCAAGACCGCAAC 60.721 57.895 0.00 0.00 43.62 4.17
799 832 3.896888 TCGGTCTTTACAGGTTTGGTCTA 59.103 43.478 0.00 0.00 0.00 2.59
838 892 1.153647 CGCCGGTCAGTCAAGCATA 60.154 57.895 1.90 0.00 0.00 3.14
921 978 9.933723 TGAATGTGATGTTGATATATAGGAGTG 57.066 33.333 0.00 0.00 0.00 3.51
985 1056 1.001641 GATCTTGTGCCACTGCCCT 60.002 57.895 0.00 0.00 36.33 5.19
1033 1118 1.529309 GTCCCCATCCTTCTCCTGC 59.471 63.158 0.00 0.00 0.00 4.85
1034 1119 0.985490 GTCCCCATCCTTCTCCTGCT 60.985 60.000 0.00 0.00 0.00 4.24
1035 1120 0.984961 TCCCCATCCTTCTCCTGCTG 60.985 60.000 0.00 0.00 0.00 4.41
1036 1121 1.153005 CCCATCCTTCTCCTGCTGC 60.153 63.158 0.00 0.00 0.00 5.25
1037 1122 1.633915 CCCATCCTTCTCCTGCTGCT 61.634 60.000 0.00 0.00 0.00 4.24
1063 1148 1.152652 TTCGTTGGTGCCCAATGGT 60.153 52.632 19.80 0.00 46.98 3.55
1090 1178 1.695893 CGGTGACAGCGGCAACTATG 61.696 60.000 19.00 0.00 35.16 2.23
1128 1216 0.407139 AAGCCAACCTCATGCTCCTT 59.593 50.000 0.00 0.00 33.36 3.36
1152 1240 2.452491 ACCCTCCCCAACAAGGCT 60.452 61.111 0.00 0.00 35.39 4.58
1203 1294 4.195334 GTGGGCCATGCTCCGGAT 62.195 66.667 10.70 0.00 0.00 4.18
1414 1505 3.118992 TCAGATGAAGTGGATCAACCTCG 60.119 47.826 0.00 0.00 39.86 4.63
1674 2243 1.156736 CGCAAGGTGGTCGAATTCTT 58.843 50.000 3.52 0.00 0.00 2.52
1679 2248 1.279271 AGGTGGTCGAATTCTTGGGAG 59.721 52.381 3.52 0.00 0.00 4.30
1752 2321 1.247419 TTGCAATTCCGGCGGTCAAT 61.247 50.000 27.32 16.47 0.00 2.57
1818 2393 1.002868 GTCACATCCACCAGCTGCT 60.003 57.895 8.66 0.00 0.00 4.24
1873 2448 6.708949 TCAAGAACAACAGGGTATGTAAACTC 59.291 38.462 0.00 0.00 43.00 3.01
1996 4264 1.892209 ATTCCCTCGAACTTTGCGTT 58.108 45.000 0.00 0.00 38.91 4.84
2245 4700 9.694137 ATGATAAGTAGCTTCTTAAATACGTCC 57.306 33.333 15.67 1.47 34.28 4.79
2256 4715 9.530633 CTTCTTAAATACGTCCTAGCACTATTT 57.469 33.333 0.00 0.00 0.00 1.40
2258 4717 9.956720 TCTTAAATACGTCCTAGCACTATTTAC 57.043 33.333 0.00 0.00 0.00 2.01
2259 4718 9.740239 CTTAAATACGTCCTAGCACTATTTACA 57.260 33.333 0.00 2.56 0.00 2.41
2260 4719 7.998753 AAATACGTCCTAGCACTATTTACAC 57.001 36.000 0.00 0.00 0.00 2.90
2261 4720 6.704289 ATACGTCCTAGCACTATTTACACA 57.296 37.500 0.00 0.00 0.00 3.72
2263 4722 4.142227 ACGTCCTAGCACTATTTACACAGG 60.142 45.833 0.00 0.00 0.00 4.00
2264 4723 4.142227 CGTCCTAGCACTATTTACACAGGT 60.142 45.833 0.00 0.00 0.00 4.00
2265 4724 5.066893 CGTCCTAGCACTATTTACACAGGTA 59.933 44.000 0.00 0.00 0.00 3.08
2266 4725 6.271566 GTCCTAGCACTATTTACACAGGTAC 58.728 44.000 0.00 0.00 0.00 3.34
2267 4726 6.096564 GTCCTAGCACTATTTACACAGGTACT 59.903 42.308 0.00 0.00 43.88 2.73
2269 4728 7.501559 TCCTAGCACTATTTACACAGGTACTAG 59.498 40.741 0.00 0.00 36.02 2.57
2270 4729 5.903810 AGCACTATTTACACAGGTACTAGC 58.096 41.667 0.00 0.00 36.02 3.42
2273 4732 6.405508 GCACTATTTACACAGGTACTAGCAGA 60.406 42.308 0.00 0.00 36.02 4.26
2371 4834 7.503566 TCAAAGAGAAAATGAGGTTCATTGACT 59.496 33.333 5.16 7.58 45.57 3.41
2373 4836 8.924511 AAGAGAAAATGAGGTTCATTGACTAA 57.075 30.769 5.16 0.00 45.57 2.24
2412 4875 0.584876 GGAACGGTTCAAAGGTCACG 59.415 55.000 21.36 0.00 0.00 4.35
2441 4904 5.885449 TGGGTGAAATTTCCTTTGTCAAT 57.115 34.783 15.48 0.00 0.00 2.57
2481 4944 9.801714 CATGTTTAATTTGTCAAGCTGATTTTC 57.198 29.630 0.00 0.00 0.00 2.29
2490 4954 6.101332 TGTCAAGCTGATTTTCCATTATTGC 58.899 36.000 0.00 0.00 0.00 3.56
2688 5171 7.821359 TGTTGTATGGATGAGAAGAAGAAGAAG 59.179 37.037 0.00 0.00 0.00 2.85
2689 5172 7.724490 TGTATGGATGAGAAGAAGAAGAAGA 57.276 36.000 0.00 0.00 0.00 2.87
2702 5185 5.590663 AGAAGAAGAAGACAAGGTTTGTTCC 59.409 40.000 0.00 0.00 45.52 3.62
2711 5194 3.244181 ACAAGGTTTGTTCCAATGATGGC 60.244 43.478 0.00 0.00 42.22 4.40
2722 5205 2.684374 CCAATGATGGCTCATTCACGAA 59.316 45.455 8.57 0.00 46.83 3.85
2723 5206 3.488047 CCAATGATGGCTCATTCACGAAC 60.488 47.826 8.57 0.00 46.83 3.95
2745 5235 6.391227 ACATGTTCCTCGAAAAACTGAAAT 57.609 33.333 10.04 0.00 0.00 2.17
2763 5253 8.525290 ACTGAAATTTATTAATGTAGCCAGCT 57.475 30.769 0.00 0.00 0.00 4.24
2843 5333 5.911280 GGAAAAGTAAACTTAAACGACCAGC 59.089 40.000 0.00 0.00 34.61 4.85
2844 5334 6.238566 GGAAAAGTAAACTTAAACGACCAGCT 60.239 38.462 0.00 0.00 34.61 4.24
2845 5335 5.668558 AAGTAAACTTAAACGACCAGCTG 57.331 39.130 6.78 6.78 33.79 4.24
2854 5344 4.648626 GACCAGCTGGCTGCCACA 62.649 66.667 33.06 0.00 44.23 4.17
2887 5377 0.969894 AAGACGAACTGGTCTGGAGG 59.030 55.000 0.00 0.00 46.21 4.30
3104 5598 5.700183 TCTAATGTTGGCTGGCCATTAATA 58.300 37.500 15.41 0.35 46.64 0.98
3117 5614 7.594351 TGGCCATTAATAAATACATCTTGCA 57.406 32.000 0.00 0.00 0.00 4.08
3286 5892 8.458573 TTGTACATATTTACAGGGCCAATTAG 57.541 34.615 6.18 0.00 33.50 1.73
3288 5894 4.518970 ACATATTTACAGGGCCAATTAGCG 59.481 41.667 6.18 0.00 0.00 4.26
3324 5930 0.239347 CAGTCAAAAGGCTTGCCTCG 59.761 55.000 15.10 6.95 0.00 4.63
3413 6019 5.441718 AATCTTGTCAAGCTCTTGGGATA 57.558 39.130 7.78 0.00 40.78 2.59
3495 6101 8.995027 TGGACTTCTTTATATTTGGTATGCAT 57.005 30.769 3.79 3.79 0.00 3.96
3548 6157 6.207417 GTGGTCCATACATGCTATAAAATGCT 59.793 38.462 0.00 0.00 0.00 3.79
3626 6235 3.072330 TGCGATAATTGAAGGGATAGCCA 59.928 43.478 0.00 0.00 35.15 4.75
3674 6283 2.124903 CTCGGTTACGCATCATACACC 58.875 52.381 0.00 0.00 40.69 4.16
3812 6424 9.857957 GGTAGTAGGAACATAGTAAGCATATTC 57.142 37.037 0.00 0.00 0.00 1.75
3815 6427 8.808092 AGTAGGAACATAGTAAGCATATTCCTC 58.192 37.037 5.92 0.16 42.65 3.71
3990 6603 3.844577 ATCAGATGTGTTCAGCTTTGC 57.155 42.857 0.00 0.00 38.31 3.68
4030 6643 3.687698 TCCTTAGCGGAAAAAGGAATTCG 59.312 43.478 1.37 0.00 46.43 3.34
4101 6714 5.735070 GCATTTTCTAAACCCTCGTGTGTTT 60.735 40.000 3.69 3.69 38.22 2.83
4102 6715 6.513720 GCATTTTCTAAACCCTCGTGTGTTTA 60.514 38.462 5.42 5.42 36.23 2.01
4104 6717 3.656559 TCTAAACCCTCGTGTGTTTAGC 58.343 45.455 20.66 0.00 46.90 3.09
4105 6718 1.223187 AAACCCTCGTGTGTTTAGCG 58.777 50.000 0.00 0.00 33.15 4.26
4106 6719 0.105408 AACCCTCGTGTGTTTAGCGT 59.895 50.000 0.00 0.00 0.00 5.07
4107 6720 0.599204 ACCCTCGTGTGTTTAGCGTG 60.599 55.000 0.00 0.00 0.00 5.34
4108 6721 0.599204 CCCTCGTGTGTTTAGCGTGT 60.599 55.000 0.00 0.00 0.00 4.49
4110 6723 2.396601 CCTCGTGTGTTTAGCGTGTTA 58.603 47.619 0.00 0.00 0.00 2.41
4111 6724 2.154389 CCTCGTGTGTTTAGCGTGTTAC 59.846 50.000 0.00 0.00 0.00 2.50
4116 6729 4.432026 CGTGTGTTTAGCGTGTTACTTTTG 59.568 41.667 0.00 0.00 0.00 2.44
4119 6732 6.408898 GTGTGTTTAGCGTGTTACTTTTGTAC 59.591 38.462 0.00 0.00 34.15 2.90
4120 6733 6.313411 TGTGTTTAGCGTGTTACTTTTGTACT 59.687 34.615 0.00 0.00 34.15 2.73
4121 6734 7.148440 TGTGTTTAGCGTGTTACTTTTGTACTT 60.148 33.333 0.00 0.00 34.15 2.24
4122 6735 7.371615 GTGTTTAGCGTGTTACTTTTGTACTTC 59.628 37.037 0.00 0.00 34.15 3.01
4123 6736 6.529463 TTAGCGTGTTACTTTTGTACTTCC 57.471 37.500 0.00 0.00 34.15 3.46
4124 6737 4.700700 AGCGTGTTACTTTTGTACTTCCT 58.299 39.130 0.00 0.00 34.15 3.36
4125 6738 4.748600 AGCGTGTTACTTTTGTACTTCCTC 59.251 41.667 0.00 0.00 34.15 3.71
4126 6739 4.084171 GCGTGTTACTTTTGTACTTCCTCC 60.084 45.833 0.00 0.00 34.15 4.30
4127 6740 5.051816 CGTGTTACTTTTGTACTTCCTCCA 58.948 41.667 0.00 0.00 34.15 3.86
4129 6742 6.204108 CGTGTTACTTTTGTACTTCCTCCATT 59.796 38.462 0.00 0.00 34.15 3.16
4130 6743 7.255001 CGTGTTACTTTTGTACTTCCTCCATTT 60.255 37.037 0.00 0.00 34.15 2.32
4131 6744 8.074370 GTGTTACTTTTGTACTTCCTCCATTTC 58.926 37.037 0.00 0.00 34.15 2.17
4132 6745 7.996644 TGTTACTTTTGTACTTCCTCCATTTCT 59.003 33.333 0.00 0.00 34.15 2.52
4133 6746 9.498176 GTTACTTTTGTACTTCCTCCATTTCTA 57.502 33.333 0.00 0.00 34.15 2.10
4135 6748 8.990163 ACTTTTGTACTTCCTCCATTTCTAAA 57.010 30.769 0.00 0.00 0.00 1.85
4136 6749 9.588096 ACTTTTGTACTTCCTCCATTTCTAAAT 57.412 29.630 0.00 0.00 0.00 1.40
4163 6776 7.798596 AAGCATTTGTAGAGATTCCACTATG 57.201 36.000 0.00 0.00 0.00 2.23
4164 6777 6.294473 AGCATTTGTAGAGATTCCACTATGG 58.706 40.000 0.00 0.00 39.43 2.74
4165 6778 6.100279 AGCATTTGTAGAGATTCCACTATGGA 59.900 38.462 0.00 0.00 46.61 3.41
4176 6789 3.935172 TCCACTATGGACCACATATGGA 58.065 45.455 7.80 12.47 45.18 3.41
4177 6790 4.502415 TCCACTATGGACCACATATGGAT 58.498 43.478 7.80 0.00 45.18 3.41
4178 6791 4.286808 TCCACTATGGACCACATATGGATG 59.713 45.833 7.80 0.00 45.18 3.51
4179 6792 6.172821 TCCACTATGGACCACATATGGATGT 61.173 44.000 7.80 0.62 45.18 3.06
4180 6793 6.926515 TCCACTATGGACCACATATGGATGTA 60.927 42.308 7.80 0.00 45.18 2.29
4181 6794 8.195413 TCCACTATGGACCACATATGGATGTAT 61.195 40.741 7.80 0.00 45.18 2.29
4230 6843 9.534565 TTCACTCATTTTGCTCTATATGTAGTC 57.465 33.333 0.00 0.00 0.00 2.59
4231 6844 8.144478 TCACTCATTTTGCTCTATATGTAGTCC 58.856 37.037 0.00 0.00 0.00 3.85
4232 6845 7.928167 CACTCATTTTGCTCTATATGTAGTCCA 59.072 37.037 0.00 0.00 0.00 4.02
4233 6846 8.654997 ACTCATTTTGCTCTATATGTAGTCCAT 58.345 33.333 0.00 0.00 37.58 3.41
4236 6849 9.935241 CATTTTGCTCTATATGTAGTCCATAGT 57.065 33.333 0.00 0.00 39.36 2.12
4237 6850 9.935241 ATTTTGCTCTATATGTAGTCCATAGTG 57.065 33.333 0.00 0.00 39.36 2.74
4238 6851 7.468141 TTGCTCTATATGTAGTCCATAGTGG 57.532 40.000 0.00 0.00 39.36 4.00
4239 6852 6.790319 TGCTCTATATGTAGTCCATAGTGGA 58.210 40.000 0.00 0.00 45.98 4.02
4252 6865 5.827756 TCCATAGTGGACTCTCTACAAAGA 58.172 41.667 0.00 0.00 42.67 2.52
4253 6866 5.652891 TCCATAGTGGACTCTCTACAAAGAC 59.347 44.000 0.00 0.00 42.67 3.01
4254 6867 5.654650 CCATAGTGGACTCTCTACAAAGACT 59.345 44.000 0.00 0.00 40.96 3.24
4255 6868 6.153680 CCATAGTGGACTCTCTACAAAGACTT 59.846 42.308 0.00 0.00 40.96 3.01
4256 6869 7.339721 CCATAGTGGACTCTCTACAAAGACTTA 59.660 40.741 0.00 0.00 40.96 2.24
4257 6870 8.908903 CATAGTGGACTCTCTACAAAGACTTAT 58.091 37.037 0.00 0.00 29.47 1.73
4260 6873 9.482175 AGTGGACTCTCTACAAAGACTTATATT 57.518 33.333 0.00 0.00 29.47 1.28
4290 6903 7.589958 ACAGATGGAGTACTGGACTTATAAG 57.410 40.000 11.05 11.05 39.06 1.73
4371 6984 1.076705 GGGAAGGAGGAACATGGGC 60.077 63.158 0.00 0.00 0.00 5.36
4379 6992 2.172717 GGAGGAACATGGGCTAAGCTTA 59.827 50.000 5.94 5.94 0.00 3.09
4442 7055 5.765182 GCTAGGAGGTACATTAACATTGCAT 59.235 40.000 0.00 0.00 0.00 3.96
4583 7205 8.738645 AAGGGTATCTAAGACACATGAATTTC 57.261 34.615 0.00 0.00 0.00 2.17
4625 7248 2.256306 TGTAACCATCACTGAGGAGCA 58.744 47.619 0.00 0.00 0.00 4.26
4648 7271 6.512415 GCAACATGGCAGATAGTTGATTACTC 60.512 42.308 21.29 5.96 42.87 2.59
4669 7293 7.581213 ACTCCATTTCAGTTGTTAATGAACA 57.419 32.000 0.00 0.00 43.94 3.18
4670 7294 8.181904 ACTCCATTTCAGTTGTTAATGAACAT 57.818 30.769 0.00 0.00 44.96 2.71
4717 7341 4.025480 CGAGTTGTACACTAAAACCACACC 60.025 45.833 0.00 0.00 35.01 4.16
4720 7344 5.355910 AGTTGTACACTAAAACCACACCAAG 59.644 40.000 0.00 0.00 31.97 3.61
4721 7345 5.100344 TGTACACTAAAACCACACCAAGA 57.900 39.130 0.00 0.00 0.00 3.02
4737 7361 9.139174 CCACACCAAGATTTTGATGTTAATTAC 57.861 33.333 0.00 0.00 37.82 1.89
4820 7444 6.583562 AGCTAGACATACCAGGTGAATAAAC 58.416 40.000 0.76 0.00 0.00 2.01
4856 7480 0.963962 CATAACATCATGCAGGGGCC 59.036 55.000 0.00 0.00 40.13 5.80
4880 7505 1.820519 CCCTGCATTGCACACAATACT 59.179 47.619 7.38 0.00 44.83 2.12
4881 7506 3.016031 CCCTGCATTGCACACAATACTA 58.984 45.455 7.38 0.00 44.83 1.82
4883 7508 4.498513 CCCTGCATTGCACACAATACTATG 60.499 45.833 7.38 0.00 44.83 2.23
4884 7509 4.096833 CCTGCATTGCACACAATACTATGT 59.903 41.667 7.38 0.00 44.83 2.29
4923 7550 3.577919 AGTGACTTACTCCTCCACAGTT 58.422 45.455 0.00 0.00 33.17 3.16
4930 7557 3.246416 ACTCCTCCACAGTTACTCACT 57.754 47.619 0.00 0.00 35.35 3.41
4941 7568 4.202326 ACAGTTACTCACTCGTTTTCCCAT 60.202 41.667 0.00 0.00 30.92 4.00
4942 7569 4.389077 CAGTTACTCACTCGTTTTCCCATC 59.611 45.833 0.00 0.00 30.92 3.51
4978 7607 1.351017 ACCGATCTTGCCTTCCTTCAA 59.649 47.619 0.00 0.00 0.00 2.69
4982 7611 0.250727 TCTTGCCTTCCTTCAACCCG 60.251 55.000 0.00 0.00 0.00 5.28
4984 7613 0.404040 TTGCCTTCCTTCAACCCGAT 59.596 50.000 0.00 0.00 0.00 4.18
5005 7634 1.277557 CAGGTCCTCCTCACCTTCTTG 59.722 57.143 0.00 0.00 41.95 3.02
5068 7710 3.387699 AGTTGGGTTTGGGAGAACAATTG 59.612 43.478 3.24 3.24 0.00 2.32
5083 7725 2.100584 ACAATTGCAATGGTTGTCGTGT 59.899 40.909 13.98 8.35 30.78 4.49
5087 7729 0.384230 GCAATGGTTGTCGTGTCGTG 60.384 55.000 0.00 0.00 0.00 4.35
5092 7735 1.198397 GTTGTCGTGTCGTGCTTCG 59.802 57.895 0.00 0.00 41.41 3.79
5095 7738 3.973516 TCGTGTCGTGCTTCGGCT 61.974 61.111 7.78 0.00 45.15 5.52
5099 7742 1.005037 TGTCGTGCTTCGGCTGAAT 60.005 52.632 8.78 0.00 45.15 2.57
5103 7746 1.699656 CGTGCTTCGGCTGAATGAGG 61.700 60.000 8.78 0.00 42.37 3.86
5108 7751 0.984230 TTCGGCTGAATGAGGAAGGT 59.016 50.000 3.13 0.00 0.00 3.50
5109 7752 0.250234 TCGGCTGAATGAGGAAGGTG 59.750 55.000 0.00 0.00 0.00 4.00
5110 7753 1.372087 CGGCTGAATGAGGAAGGTGC 61.372 60.000 0.00 0.00 0.00 5.01
5130 7773 3.267733 GGAGGACCCCAAACCCAA 58.732 61.111 0.00 0.00 0.00 4.12
5131 7774 1.228769 GGAGGACCCCAAACCCAAC 60.229 63.158 0.00 0.00 0.00 3.77
5133 7776 0.105913 GAGGACCCCAAACCCAACAA 60.106 55.000 0.00 0.00 0.00 2.83
5134 7777 0.565674 AGGACCCCAAACCCAACAAT 59.434 50.000 0.00 0.00 0.00 2.71
5135 7778 1.790157 AGGACCCCAAACCCAACAATA 59.210 47.619 0.00 0.00 0.00 1.90
5136 7779 2.385417 AGGACCCCAAACCCAACAATAT 59.615 45.455 0.00 0.00 0.00 1.28
5137 7780 2.764010 GGACCCCAAACCCAACAATATC 59.236 50.000 0.00 0.00 0.00 1.63
5138 7781 3.436243 GACCCCAAACCCAACAATATCA 58.564 45.455 0.00 0.00 0.00 2.15
5139 7782 4.030216 GACCCCAAACCCAACAATATCAT 58.970 43.478 0.00 0.00 0.00 2.45
5140 7783 4.030216 ACCCCAAACCCAACAATATCATC 58.970 43.478 0.00 0.00 0.00 2.92
5141 7784 4.029520 CCCCAAACCCAACAATATCATCA 58.970 43.478 0.00 0.00 0.00 3.07
5142 7785 4.141959 CCCCAAACCCAACAATATCATCAC 60.142 45.833 0.00 0.00 0.00 3.06
5143 7786 4.141959 CCCAAACCCAACAATATCATCACC 60.142 45.833 0.00 0.00 0.00 4.02
5144 7787 4.439974 CCAAACCCAACAATATCATCACCG 60.440 45.833 0.00 0.00 0.00 4.94
5156 7799 3.612247 ATCACCGCCACCTCACAGC 62.612 63.158 0.00 0.00 0.00 4.40
5165 7808 3.324930 CCTCACAGCCCTCCAGCA 61.325 66.667 0.00 0.00 34.23 4.41
5187 7830 2.487265 GCGGGATTCACCATGACCTTAT 60.487 50.000 0.00 0.00 41.20 1.73
5188 7831 3.820557 CGGGATTCACCATGACCTTATT 58.179 45.455 0.00 0.00 41.20 1.40
5190 7833 4.997395 CGGGATTCACCATGACCTTATTAG 59.003 45.833 0.00 0.00 41.20 1.73
5191 7834 4.762251 GGGATTCACCATGACCTTATTAGC 59.238 45.833 0.00 0.00 41.20 3.09
5192 7835 5.376625 GGATTCACCATGACCTTATTAGCA 58.623 41.667 0.00 0.00 38.79 3.49
5193 7836 6.006449 GGATTCACCATGACCTTATTAGCAT 58.994 40.000 0.00 0.00 38.79 3.79
5194 7837 6.072286 GGATTCACCATGACCTTATTAGCATG 60.072 42.308 0.00 0.00 38.22 4.06
5195 7838 5.372343 TCACCATGACCTTATTAGCATGT 57.628 39.130 0.00 0.00 37.11 3.21
5202 7845 4.471747 TGACCTTATTAGCATGTGTGGGTA 59.528 41.667 0.00 0.00 0.00 3.69
5211 7854 0.998928 ATGTGTGGGTAGCCAATGGA 59.001 50.000 16.85 0.16 0.00 3.41
5231 7874 4.471025 TGGATAAAGCACAATCAGAGAGGA 59.529 41.667 0.00 0.00 0.00 3.71
5237 7880 0.467384 ACAATCAGAGAGGATGGCCG 59.533 55.000 0.00 0.00 39.96 6.13
5240 7883 3.473647 CAGAGAGGATGGCCGCCA 61.474 66.667 16.17 16.17 39.96 5.69
5272 7916 2.506217 CACACGGCGTGCTATCGT 60.506 61.111 37.21 16.26 39.19 3.73
5290 7934 0.949105 GTGTGGTACCAGCCTTCGTG 60.949 60.000 16.93 0.00 0.00 4.35
5292 7936 2.214216 TGGTACCAGCCTTCGTGCT 61.214 57.895 11.60 0.00 44.00 4.40
5301 7945 3.482156 AGCCTTCGTGCTGATGAATAT 57.518 42.857 0.00 0.00 40.90 1.28
5302 7946 4.607293 AGCCTTCGTGCTGATGAATATA 57.393 40.909 0.00 0.00 40.90 0.86
5303 7947 4.564041 AGCCTTCGTGCTGATGAATATAG 58.436 43.478 0.00 0.00 40.90 1.31
5304 7948 3.124297 GCCTTCGTGCTGATGAATATAGC 59.876 47.826 0.00 0.00 37.93 2.97
5305 7949 3.681897 CCTTCGTGCTGATGAATATAGCC 59.318 47.826 0.00 0.00 36.64 3.93
5306 7950 4.309933 CTTCGTGCTGATGAATATAGCCA 58.690 43.478 0.00 0.00 36.64 4.75
5307 7951 4.541973 TCGTGCTGATGAATATAGCCAT 57.458 40.909 0.00 0.00 36.64 4.40
5308 7952 4.248058 TCGTGCTGATGAATATAGCCATG 58.752 43.478 0.00 0.00 36.64 3.66
5310 7954 4.008330 GTGCTGATGAATATAGCCATGCT 58.992 43.478 0.00 0.00 43.41 3.79
5311 7955 4.094590 GTGCTGATGAATATAGCCATGCTC 59.905 45.833 0.00 0.00 40.44 4.26
5312 7956 3.309138 GCTGATGAATATAGCCATGCTCG 59.691 47.826 0.00 0.00 40.44 5.03
5313 7957 3.865446 TGATGAATATAGCCATGCTCGG 58.135 45.455 0.00 0.00 40.44 4.63
5330 7974 2.418628 CTCGGTGTGTTTGTTCTTGTGT 59.581 45.455 0.00 0.00 0.00 3.72
5331 7975 2.160615 TCGGTGTGTTTGTTCTTGTGTG 59.839 45.455 0.00 0.00 0.00 3.82
5334 7978 2.661195 GTGTGTTTGTTCTTGTGTGTGC 59.339 45.455 0.00 0.00 0.00 4.57
5337 7981 2.094803 TGTTTGTTCTTGTGTGTGCTGG 60.095 45.455 0.00 0.00 0.00 4.85
5352 7996 3.081061 GTGCTGGTGTTGATCCAATACA 58.919 45.455 8.42 0.00 37.23 2.29
5355 7999 4.398988 TGCTGGTGTTGATCCAATACATTC 59.601 41.667 8.42 0.00 37.23 2.67
5356 8000 4.398988 GCTGGTGTTGATCCAATACATTCA 59.601 41.667 8.42 0.00 37.23 2.57
5358 8002 5.569355 TGGTGTTGATCCAATACATTCAGT 58.431 37.500 8.42 0.00 37.23 3.41
5363 8007 9.722056 GTGTTGATCCAATACATTCAGTTTATC 57.278 33.333 0.00 0.00 35.92 1.75
5430 8075 8.736751 TTCTTCGGTTAAAATTAGAATTGTGC 57.263 30.769 0.00 0.00 0.00 4.57
5431 8076 7.877003 TCTTCGGTTAAAATTAGAATTGTGCA 58.123 30.769 0.00 0.00 0.00 4.57
5433 8078 7.861176 TCGGTTAAAATTAGAATTGTGCAAC 57.139 32.000 0.00 0.00 37.35 4.17
5448 8093 7.625828 ATTGTGCAACTAATTAGGAGTTACC 57.374 36.000 16.73 1.14 35.36 2.85
5523 8168 9.667989 CATGTATTGGTATCATGTTGTGTATTG 57.332 33.333 0.00 0.00 35.61 1.90
5573 8218 2.350192 CCGGGCCAAAATTTATTTTCGC 59.650 45.455 4.39 8.44 41.21 4.70
5574 8219 2.028643 CGGGCCAAAATTTATTTTCGCG 59.971 45.455 4.39 0.00 42.31 5.87
5579 8224 5.517054 GGCCAAAATTTATTTTCGCGACATA 59.483 36.000 9.15 5.61 42.31 2.29
5583 8228 7.647715 CCAAAATTTATTTTCGCGACATAGGAT 59.352 33.333 9.15 4.26 37.86 3.24
5584 8229 9.658475 CAAAATTTATTTTCGCGACATAGGATA 57.342 29.630 9.15 0.00 37.86 2.59
5591 8236 7.773864 TTTTCGCGACATAGGATAATTTACA 57.226 32.000 9.15 0.00 0.00 2.41
5592 8237 7.956420 TTTCGCGACATAGGATAATTTACAT 57.044 32.000 9.15 0.00 0.00 2.29
5593 8238 9.478768 TTTTCGCGACATAGGATAATTTACATA 57.521 29.630 9.15 0.00 0.00 2.29
5594 8239 8.456904 TTCGCGACATAGGATAATTTACATAC 57.543 34.615 9.15 0.00 0.00 2.39
5595 8240 7.823665 TCGCGACATAGGATAATTTACATACT 58.176 34.615 3.71 0.00 0.00 2.12
5596 8241 8.301720 TCGCGACATAGGATAATTTACATACTT 58.698 33.333 3.71 0.00 0.00 2.24
5597 8242 9.563898 CGCGACATAGGATAATTTACATACTTA 57.436 33.333 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.597662 TTAATTTGCTCTTACGTACAGAAGTT 57.402 30.769 0.00 0.00 0.00 2.66
1 2 8.597662 TTTAATTTGCTCTTACGTACAGAAGT 57.402 30.769 0.00 0.00 0.00 3.01
2 3 9.872757 TTTTTAATTTGCTCTTACGTACAGAAG 57.127 29.630 0.00 0.00 0.00 2.85
27 28 7.208080 ACTTCATACAACTACAACGACTCTTT 58.792 34.615 0.00 0.00 0.00 2.52
34 35 7.464178 GCATTCCTACTTCATACAACTACAACG 60.464 40.741 0.00 0.00 0.00 4.10
86 87 4.471747 TGCACAGGACAACCCATACTAATA 59.528 41.667 0.00 0.00 37.41 0.98
122 123 0.187117 TGCCAATGAAACTGGTCCCA 59.813 50.000 0.00 0.00 0.00 4.37
130 131 1.522258 CGTGCAAGTTGCCAATGAAAC 59.478 47.619 24.59 12.97 44.23 2.78
170 171 2.029838 ATGCAGTACAGGCTTGCTAC 57.970 50.000 10.02 0.00 0.00 3.58
186 187 2.076628 CGCGTGCAACACTGAATGC 61.077 57.895 0.00 5.08 39.50 3.56
201 202 1.067693 TTGAACTGTAGACATGCGCG 58.932 50.000 0.00 0.00 0.00 6.86
226 227 5.720371 TGGTGTCATTATTTCAACCTTGG 57.280 39.130 0.00 0.00 0.00 3.61
242 243 5.575957 TCTTTCGTTATCGAGTATGGTGTC 58.424 41.667 0.00 0.00 46.81 3.67
248 252 8.235905 GCTATACCTTCTTTCGTTATCGAGTAT 58.764 37.037 0.00 3.23 46.81 2.12
253 257 7.085116 AGATGCTATACCTTCTTTCGTTATCG 58.915 38.462 0.00 0.00 38.55 2.92
258 262 4.338682 ACGAGATGCTATACCTTCTTTCGT 59.661 41.667 0.00 0.00 0.00 3.85
260 264 7.921745 AGTAAACGAGATGCTATACCTTCTTTC 59.078 37.037 0.00 0.00 0.00 2.62
268 272 9.841880 TCAATCATAGTAAACGAGATGCTATAC 57.158 33.333 0.00 0.00 0.00 1.47
273 277 6.697455 TCAGTCAATCATAGTAAACGAGATGC 59.303 38.462 0.00 0.00 0.00 3.91
279 283 9.516314 TGAGTATTCAGTCAATCATAGTAAACG 57.484 33.333 0.00 0.00 30.95 3.60
288 292 9.889128 TTGTTGATATGAGTATTCAGTCAATCA 57.111 29.630 16.50 13.98 40.69 2.57
299 303 9.807649 GCAAAAATTCCTTGTTGATATGAGTAT 57.192 29.630 3.07 0.00 0.00 2.12
322 326 0.810823 AACGACTCCCGAAAACGCAA 60.811 50.000 0.00 0.00 41.76 4.85
326 330 1.574134 TGTGAACGACTCCCGAAAAC 58.426 50.000 0.00 0.00 41.76 2.43
365 369 3.371168 TCAAATTGCTCAAGCGAAACAC 58.629 40.909 0.00 0.00 45.83 3.32
371 375 2.479049 CCATCCTCAAATTGCTCAAGCG 60.479 50.000 0.00 0.00 45.83 4.68
379 383 2.806434 TGGTCACCCATCCTCAAATTG 58.194 47.619 0.00 0.00 35.17 2.32
399 403 2.374170 ACAGGGTATCAACTTTCGGGTT 59.626 45.455 0.00 0.00 0.00 4.11
404 408 3.437049 GTGCAGACAGGGTATCAACTTTC 59.563 47.826 0.00 0.00 0.00 2.62
436 440 1.146707 TCAGCTGCTGCACACTTGA 59.853 52.632 24.38 9.19 42.74 3.02
437 441 1.281960 GTCAGCTGCTGCACACTTG 59.718 57.895 24.38 6.88 42.74 3.16
550 563 1.940613 GCTCCGGTTTATCGCTCAATT 59.059 47.619 0.00 0.00 0.00 2.32
551 564 1.134521 TGCTCCGGTTTATCGCTCAAT 60.135 47.619 0.00 0.00 0.00 2.57
560 573 3.695830 AGACAGATTTGCTCCGGTTTA 57.304 42.857 0.00 0.00 0.00 2.01
563 576 2.154462 CAAAGACAGATTTGCTCCGGT 58.846 47.619 0.00 0.00 33.71 5.28
564 577 2.417933 CTCAAAGACAGATTTGCTCCGG 59.582 50.000 0.00 0.00 39.51 5.14
565 578 2.159599 GCTCAAAGACAGATTTGCTCCG 60.160 50.000 0.00 0.00 39.51 4.63
581 594 1.225376 CGTAAGCCGTTGGTGCTCAA 61.225 55.000 0.00 0.00 38.34 3.02
582 595 1.666553 CGTAAGCCGTTGGTGCTCA 60.667 57.895 0.00 0.00 38.34 4.26
616 649 3.627123 GTGTGTACCGGGTTTAAGTTGTT 59.373 43.478 4.31 0.00 0.00 2.83
634 667 3.118454 GTGGCATCCGTCGGTGTG 61.118 66.667 11.88 12.51 0.00 3.82
649 682 2.798847 CGCCAGTATCTCATGTCATGTG 59.201 50.000 12.54 10.33 0.00 3.21
650 683 2.432146 ACGCCAGTATCTCATGTCATGT 59.568 45.455 12.54 0.00 0.00 3.21
651 684 3.055591 GACGCCAGTATCTCATGTCATG 58.944 50.000 6.47 6.47 0.00 3.07
652 685 2.287849 CGACGCCAGTATCTCATGTCAT 60.288 50.000 0.00 0.00 0.00 3.06
653 686 1.065551 CGACGCCAGTATCTCATGTCA 59.934 52.381 0.00 0.00 0.00 3.58
654 687 1.600663 CCGACGCCAGTATCTCATGTC 60.601 57.143 0.00 0.00 0.00 3.06
655 688 0.385751 CCGACGCCAGTATCTCATGT 59.614 55.000 0.00 0.00 0.00 3.21
666 699 4.210093 ACGACAACACCGACGCCA 62.210 61.111 0.00 0.00 0.00 5.69
679 712 2.205074 GACATGATGGGTGATGACGAC 58.795 52.381 0.00 0.00 0.00 4.34
689 722 1.153168 GGGTCGTGGACATGATGGG 60.153 63.158 0.00 0.00 33.68 4.00
718 751 1.214589 GTTTCGTAGCCAGCGGAGA 59.785 57.895 0.00 0.00 0.00 3.71
749 782 4.766404 ATTAGGAAAGACTTTGGTTGCG 57.234 40.909 4.85 0.00 0.00 4.85
799 832 0.828022 TTGAGTGGTGTGAAGACCGT 59.172 50.000 0.00 0.00 39.07 4.83
838 892 3.119779 CGGCGAGAGAGACTAAAGACTTT 60.120 47.826 0.00 5.62 0.00 2.66
921 978 3.608073 GCAAAATAATGCAACACCGAGTC 59.392 43.478 0.00 0.00 45.70 3.36
954 1021 3.760684 GCACAAGATCCTTGATGGTTTCT 59.239 43.478 13.00 0.00 37.07 2.52
955 1022 3.119352 GGCACAAGATCCTTGATGGTTTC 60.119 47.826 13.00 0.00 37.07 2.78
966 1037 2.048603 GGGCAGTGGCACAAGATCC 61.049 63.158 21.41 12.03 45.12 3.36
985 1056 1.065102 GTCCATCGACTAGCTTACGCA 59.935 52.381 0.00 0.00 35.80 5.24
1033 1118 2.037136 CAACGAAGGGCAGGAGCAG 61.037 63.158 0.00 0.00 44.61 4.24
1034 1119 2.032528 CAACGAAGGGCAGGAGCA 59.967 61.111 0.00 0.00 44.61 4.26
1035 1120 2.747855 CCAACGAAGGGCAGGAGC 60.748 66.667 0.00 0.00 41.10 4.70
1036 1121 1.672356 CACCAACGAAGGGCAGGAG 60.672 63.158 0.00 0.00 0.00 3.69
1037 1122 2.429930 CACCAACGAAGGGCAGGA 59.570 61.111 0.00 0.00 0.00 3.86
1063 1148 1.663388 CGCTGTCACCGCACACTAA 60.663 57.895 0.00 0.00 0.00 2.24
1090 1178 1.533625 TGGTAGGTGCTGTTTGATGC 58.466 50.000 0.00 0.00 0.00 3.91
1128 1216 2.122324 TTGGGGAGGGTGGACGAA 60.122 61.111 0.00 0.00 0.00 3.85
1203 1294 2.486982 GAGCGTAAGGGCGTAGATGATA 59.513 50.000 0.00 0.00 38.18 2.15
1442 1533 0.388520 CAAGTGCGTGATGGAGTCGA 60.389 55.000 0.00 0.00 0.00 4.20
1674 2243 1.764723 CTCATGCTACACCATCTCCCA 59.235 52.381 0.00 0.00 0.00 4.37
1679 2248 2.361119 TCGTACCTCATGCTACACCATC 59.639 50.000 0.00 0.00 0.00 3.51
1842 2417 2.021457 CCCTGTTGTTCTTGAACGGTT 58.979 47.619 8.68 0.00 0.00 4.44
1873 2448 0.995024 ATGTCCTGGAAAGGGTGAGG 59.005 55.000 0.00 0.00 0.00 3.86
1986 4254 3.501828 TGTATGCATCTCAACGCAAAGTT 59.498 39.130 0.19 0.00 45.45 2.66
1996 4264 4.486125 TTTACTGGCTGTATGCATCTCA 57.514 40.909 0.19 3.21 45.15 3.27
2028 4299 7.996788 TGGAGGGAGTCTATATATCAGTACAA 58.003 38.462 0.00 0.00 0.00 2.41
2043 4314 5.893824 ACAAATATTTGGAATGGAGGGAGTC 59.106 40.000 27.43 0.00 42.34 3.36
2144 4575 5.655532 AGTAAATCAGCTTGCCATGAAAGAT 59.344 36.000 11.12 3.25 0.00 2.40
2244 4699 6.466885 AGTACCTGTGTAAATAGTGCTAGG 57.533 41.667 0.00 0.00 0.00 3.02
2245 4700 7.140048 GCTAGTACCTGTGTAAATAGTGCTAG 58.860 42.308 8.61 8.61 42.86 3.42
2256 4715 4.262617 CTCTGTCTGCTAGTACCTGTGTA 58.737 47.826 0.00 0.00 0.00 2.90
2257 4716 3.085533 CTCTGTCTGCTAGTACCTGTGT 58.914 50.000 0.00 0.00 0.00 3.72
2258 4717 2.159310 GCTCTGTCTGCTAGTACCTGTG 60.159 54.545 0.00 0.00 0.00 3.66
2259 4718 2.096248 GCTCTGTCTGCTAGTACCTGT 58.904 52.381 0.00 0.00 0.00 4.00
2260 4719 2.374184 AGCTCTGTCTGCTAGTACCTG 58.626 52.381 0.00 0.00 39.21 4.00
2261 4720 2.818751 AGCTCTGTCTGCTAGTACCT 57.181 50.000 0.00 0.00 39.21 3.08
2263 4722 5.124138 TGTTCTAAGCTCTGTCTGCTAGTAC 59.876 44.000 0.00 0.00 40.22 2.73
2264 4723 5.254115 TGTTCTAAGCTCTGTCTGCTAGTA 58.746 41.667 0.00 0.00 40.22 1.82
2265 4724 4.082845 TGTTCTAAGCTCTGTCTGCTAGT 58.917 43.478 0.00 0.00 40.22 2.57
2266 4725 4.397730 TCTGTTCTAAGCTCTGTCTGCTAG 59.602 45.833 0.00 0.00 40.22 3.42
2267 4726 4.336280 TCTGTTCTAAGCTCTGTCTGCTA 58.664 43.478 0.00 0.00 40.22 3.49
2269 4728 3.584406 TCTGTTCTAAGCTCTGTCTGC 57.416 47.619 0.00 0.00 0.00 4.26
2270 4729 5.321959 TCATCTGTTCTAAGCTCTGTCTG 57.678 43.478 0.00 0.00 0.00 3.51
2273 4732 9.507329 TTTTTATTCATCTGTTCTAAGCTCTGT 57.493 29.630 0.00 0.00 0.00 3.41
2357 4820 3.256704 ACCCCTTAGTCAATGAACCTCA 58.743 45.455 0.00 0.00 0.00 3.86
2371 4834 3.068590 CGATTCTAGCGGTTTACCCCTTA 59.931 47.826 0.00 0.00 0.00 2.69
2373 4836 1.411612 CGATTCTAGCGGTTTACCCCT 59.588 52.381 0.00 0.00 0.00 4.79
2412 4875 6.545666 ACAAAGGAAATTTCACCCATTTTTCC 59.454 34.615 19.49 4.90 43.59 3.13
2441 4904 8.420222 CAAATTAAACATGGGTCAGCCATATAA 58.580 33.333 8.42 8.96 36.17 0.98
2580 5055 0.736325 CGTGAGTTGCGTCCTAAGGG 60.736 60.000 0.00 0.00 0.00 3.95
2581 5056 1.352156 GCGTGAGTTGCGTCCTAAGG 61.352 60.000 0.00 0.00 0.00 2.69
2661 5144 7.855375 TCTTCTTCTTCTCATCCATACAACAT 58.145 34.615 0.00 0.00 0.00 2.71
2711 5194 3.061295 CGAGGAACATGTTCGTGAATGAG 59.939 47.826 32.16 15.19 40.37 2.90
2722 5205 5.828299 TTTCAGTTTTTCGAGGAACATGT 57.172 34.783 13.32 0.00 0.00 3.21
2723 5206 7.698836 AAATTTCAGTTTTTCGAGGAACATG 57.301 32.000 13.32 0.00 0.00 3.21
2745 5235 9.555727 CTTAACCTAGCTGGCTACATTAATAAA 57.444 33.333 0.00 0.00 40.22 1.40
2763 5253 6.697641 AATCTGGGACTGAAACTTAACCTA 57.302 37.500 0.00 0.00 40.32 3.08
2824 5314 4.062991 CCAGCTGGTCGTTTAAGTTTACT 58.937 43.478 25.53 0.00 0.00 2.24
2843 5333 1.098050 GGTCTATTTGTGGCAGCCAG 58.902 55.000 16.83 1.26 32.34 4.85
2844 5334 0.676466 CGGTCTATTTGTGGCAGCCA 60.676 55.000 11.22 11.22 0.00 4.75
2845 5335 1.376609 CCGGTCTATTTGTGGCAGCC 61.377 60.000 3.66 3.66 0.00 4.85
2854 5344 4.220163 AGTTCGTCTTCTTCCGGTCTATTT 59.780 41.667 0.00 0.00 0.00 1.40
2887 5377 3.576550 ACTCTGAACTCTTCTCCTCCAAC 59.423 47.826 0.00 0.00 0.00 3.77
3062 5556 9.847224 ACATTAGATTTATTCAGGGTAATCGTT 57.153 29.630 0.00 0.00 33.38 3.85
3070 5564 6.239120 CCAGCCAACATTAGATTTATTCAGGG 60.239 42.308 0.00 0.00 0.00 4.45
3072 5566 6.211515 GCCAGCCAACATTAGATTTATTCAG 58.788 40.000 0.00 0.00 0.00 3.02
3074 5568 5.068987 TGGCCAGCCAACATTAGATTTATTC 59.931 40.000 9.42 0.00 44.12 1.75
3104 5598 4.875536 TCAGCGTACATGCAAGATGTATTT 59.124 37.500 2.17 0.00 36.94 1.40
3117 5614 9.595823 AAAGTACTATGTATTTTCAGCGTACAT 57.404 29.630 0.00 0.00 40.85 2.29
3187 5694 7.669427 ACAAGTCATCCATTGCAAAATAAGAA 58.331 30.769 1.71 0.00 0.00 2.52
3286 5892 0.932399 GCAATTTGCATTCCATCCGC 59.068 50.000 16.35 0.00 44.26 5.54
3324 5930 4.518970 TCTGTAAAACCTTGTCCTGAATGC 59.481 41.667 0.00 0.00 0.00 3.56
3363 5969 9.593134 TTGTGTTGTAATTTTGCAATAAGTTCT 57.407 25.926 0.00 0.00 35.32 3.01
3413 6019 1.661463 TTCCTCTCCCTGAATGCAGT 58.339 50.000 0.00 0.00 40.63 4.40
3510 6117 7.180322 TGTATGGACCACAATGCAAAATATT 57.820 32.000 0.00 0.00 0.00 1.28
3519 6128 7.509141 TTTATAGCATGTATGGACCACAATG 57.491 36.000 0.00 2.30 0.00 2.82
3548 6157 6.524734 TGTTTCTTTCTGCACATTAGAGAGA 58.475 36.000 0.00 0.00 34.67 3.10
3626 6235 5.799213 CTTGTGGAGATACAGAAGACCTTT 58.201 41.667 0.00 0.00 42.48 3.11
3674 6283 0.036388 TTGCTGGCCTTAAGGTCTCG 60.036 55.000 25.97 17.54 41.34 4.04
3990 6603 6.533367 GCTAAGGATCTCAAGAAGTAACACAG 59.467 42.308 0.00 0.00 0.00 3.66
4030 6643 3.952967 AGTCTCCGTACTGATAGAAACCC 59.047 47.826 0.00 0.00 0.00 4.11
4101 6714 5.846203 AGGAAGTACAAAAGTAACACGCTA 58.154 37.500 0.00 0.00 0.00 4.26
4102 6715 4.700700 AGGAAGTACAAAAGTAACACGCT 58.299 39.130 0.00 0.00 0.00 5.07
4104 6717 5.051816 TGGAGGAAGTACAAAAGTAACACG 58.948 41.667 0.00 0.00 0.00 4.49
4105 6718 7.506328 AATGGAGGAAGTACAAAAGTAACAC 57.494 36.000 0.00 0.00 0.00 3.32
4106 6719 7.996644 AGAAATGGAGGAAGTACAAAAGTAACA 59.003 33.333 0.00 0.00 0.00 2.41
4107 6720 8.392372 AGAAATGGAGGAAGTACAAAAGTAAC 57.608 34.615 0.00 0.00 0.00 2.50
4110 6723 8.990163 TTTAGAAATGGAGGAAGTACAAAAGT 57.010 30.769 0.00 0.00 0.00 2.66
4137 6750 9.499479 CATAGTGGAATCTCTACAAATGCTTAT 57.501 33.333 0.00 0.00 29.47 1.73
4138 6751 7.933577 CCATAGTGGAATCTCTACAAATGCTTA 59.066 37.037 0.00 0.00 40.96 3.09
4139 6752 6.769822 CCATAGTGGAATCTCTACAAATGCTT 59.230 38.462 0.00 0.00 40.96 3.91
4140 6753 6.100279 TCCATAGTGGAATCTCTACAAATGCT 59.900 38.462 0.00 0.00 45.00 3.79
4141 6754 6.291377 TCCATAGTGGAATCTCTACAAATGC 58.709 40.000 0.00 0.00 45.00 3.56
4153 6766 8.854993 ACATCCATATGTGGTCCATAGTGGAAT 61.855 40.741 21.68 14.02 45.80 3.01
4154 6767 7.610302 ACATCCATATGTGGTCCATAGTGGAA 61.610 42.308 21.68 11.00 45.80 3.53
4155 6768 3.935172 TCCATATGTGGTCCATAGTGGA 58.065 45.455 16.81 16.81 43.76 4.02
4156 6769 4.042062 ACATCCATATGTGGTCCATAGTGG 59.958 45.833 8.51 13.62 44.79 4.00
4157 6770 5.233083 ACATCCATATGTGGTCCATAGTG 57.767 43.478 8.51 0.00 44.79 2.74
4158 6771 8.860517 ATATACATCCATATGTGGTCCATAGT 57.139 34.615 8.51 2.72 45.99 2.12
4161 6774 9.680409 ATCTATATACATCCATATGTGGTCCAT 57.320 33.333 8.51 1.45 45.99 3.41
4162 6775 8.927411 CATCTATATACATCCATATGTGGTCCA 58.073 37.037 8.51 0.00 45.99 4.02
4163 6776 7.875041 GCATCTATATACATCCATATGTGGTCC 59.125 40.741 8.51 0.00 45.99 4.46
4164 6777 8.424133 TGCATCTATATACATCCATATGTGGTC 58.576 37.037 8.51 0.00 45.99 4.02
4165 6778 8.322905 TGCATCTATATACATCCATATGTGGT 57.677 34.615 8.51 0.00 45.99 4.16
4166 6779 9.788889 AATGCATCTATATACATCCATATGTGG 57.211 33.333 0.00 1.19 45.99 4.17
4204 6817 9.534565 GACTACATATAGAGCAAAATGAGTGAA 57.465 33.333 0.00 0.00 32.23 3.18
4205 6818 8.144478 GGACTACATATAGAGCAAAATGAGTGA 58.856 37.037 0.00 0.00 32.23 3.41
4206 6819 7.928167 TGGACTACATATAGAGCAAAATGAGTG 59.072 37.037 0.00 0.00 32.23 3.51
4207 6820 8.023021 TGGACTACATATAGAGCAAAATGAGT 57.977 34.615 0.00 0.00 32.23 3.41
4210 6823 9.935241 ACTATGGACTACATATAGAGCAAAATG 57.065 33.333 0.00 0.00 41.07 2.32
4211 6824 9.935241 CACTATGGACTACATATAGAGCAAAAT 57.065 33.333 0.00 0.00 41.07 1.82
4212 6825 8.367911 CCACTATGGACTACATATAGAGCAAAA 58.632 37.037 0.00 0.00 40.96 2.44
4213 6826 7.728532 TCCACTATGGACTACATATAGAGCAAA 59.271 37.037 0.00 0.00 42.67 3.68
4214 6827 7.238710 TCCACTATGGACTACATATAGAGCAA 58.761 38.462 0.00 0.00 42.67 3.91
4215 6828 6.790319 TCCACTATGGACTACATATAGAGCA 58.210 40.000 0.00 0.00 42.67 4.26
4229 6842 5.652891 GTCTTTGTAGAGAGTCCACTATGGA 59.347 44.000 0.00 0.00 45.98 3.41
4230 6843 5.654650 AGTCTTTGTAGAGAGTCCACTATGG 59.345 44.000 0.00 0.00 39.43 2.74
4231 6844 6.767524 AGTCTTTGTAGAGAGTCCACTATG 57.232 41.667 0.00 0.00 0.00 2.23
4234 6847 9.482175 AATATAAGTCTTTGTAGAGAGTCCACT 57.518 33.333 0.00 0.00 0.00 4.00
4256 6869 9.213777 TCCAGTACTCCATCTGTTCTTAAATAT 57.786 33.333 0.00 0.00 0.00 1.28
4257 6870 8.475639 GTCCAGTACTCCATCTGTTCTTAAATA 58.524 37.037 0.00 0.00 0.00 1.40
4258 6871 7.181125 AGTCCAGTACTCCATCTGTTCTTAAAT 59.819 37.037 0.00 0.00 30.33 1.40
4259 6872 6.497259 AGTCCAGTACTCCATCTGTTCTTAAA 59.503 38.462 0.00 0.00 30.33 1.52
4260 6873 6.017192 AGTCCAGTACTCCATCTGTTCTTAA 58.983 40.000 0.00 0.00 30.33 1.85
4261 6874 5.580998 AGTCCAGTACTCCATCTGTTCTTA 58.419 41.667 0.00 0.00 30.33 2.10
4262 6875 4.421131 AGTCCAGTACTCCATCTGTTCTT 58.579 43.478 0.00 0.00 30.33 2.52
4263 6876 4.054359 AGTCCAGTACTCCATCTGTTCT 57.946 45.455 0.00 0.00 30.33 3.01
4264 6877 4.810191 AAGTCCAGTACTCCATCTGTTC 57.190 45.455 0.00 0.00 37.50 3.18
4265 6878 7.620094 ACTTATAAGTCCAGTACTCCATCTGTT 59.380 37.037 12.50 0.00 37.50 3.16
4266 6879 7.126733 ACTTATAAGTCCAGTACTCCATCTGT 58.873 38.462 12.50 0.00 37.50 3.41
4267 6880 7.589958 ACTTATAAGTCCAGTACTCCATCTG 57.410 40.000 12.50 0.00 37.50 2.90
4268 6881 8.611051 AAACTTATAAGTCCAGTACTCCATCT 57.389 34.615 18.28 0.00 38.57 2.90
4311 6924 5.746245 AGAAAGCGAGAAAGTATCTTCATCG 59.254 40.000 10.03 10.03 38.96 3.84
4442 7055 4.058124 GCACTCTCTTGTACACACATCAA 58.942 43.478 0.00 0.00 33.76 2.57
4625 7248 6.058183 GGAGTAATCAACTATCTGCCATGTT 58.942 40.000 0.00 0.00 39.07 2.71
4668 7292 6.798482 ACACCAATATGATTGTGTGCTTATG 58.202 36.000 15.04 0.00 0.00 1.90
4669 7293 7.254761 CGTACACCAATATGATTGTGTGCTTAT 60.255 37.037 15.04 4.93 0.00 1.73
4670 7294 6.036626 CGTACACCAATATGATTGTGTGCTTA 59.963 38.462 15.04 4.98 0.00 3.09
4788 7412 6.717540 CACCTGGTATGTCTAGCTATTCTAGT 59.282 42.308 0.00 0.00 44.10 2.57
4792 7416 6.406692 TTCACCTGGTATGTCTAGCTATTC 57.593 41.667 0.00 0.00 0.00 1.75
4798 7422 9.530633 GTAAGTTTATTCACCTGGTATGTCTAG 57.469 37.037 0.00 0.00 0.00 2.43
4799 7423 9.038072 TGTAAGTTTATTCACCTGGTATGTCTA 57.962 33.333 0.00 0.00 0.00 2.59
4810 7434 9.918630 TTCTGTAGTAGTGTAAGTTTATTCACC 57.081 33.333 0.00 0.00 0.00 4.02
4840 7464 0.544833 TTTGGCCCCTGCATGATGTT 60.545 50.000 0.00 0.00 40.13 2.71
4856 7480 0.104487 TGTGTGCAATGCAGGGTTTG 59.896 50.000 8.73 0.00 40.08 2.93
4902 7527 3.246416 ACTGTGGAGGAGTAAGTCACT 57.754 47.619 0.00 0.00 41.47 3.41
4920 7547 4.562963 GGATGGGAAAACGAGTGAGTAACT 60.563 45.833 0.00 0.00 43.85 2.24
4923 7550 2.235402 GGGATGGGAAAACGAGTGAGTA 59.765 50.000 0.00 0.00 0.00 2.59
4930 7557 1.076350 ACAATGGGGATGGGAAAACGA 59.924 47.619 0.00 0.00 0.00 3.85
4941 7568 0.404040 GGTGAGGTTGACAATGGGGA 59.596 55.000 0.00 0.00 0.00 4.81
4942 7569 0.960364 CGGTGAGGTTGACAATGGGG 60.960 60.000 0.00 0.00 0.00 4.96
4978 7607 3.110552 AGGAGGACCTGATCGGGT 58.889 61.111 26.78 26.78 45.92 5.28
5039 7677 2.644992 CAAACCCAACTGGCGAGC 59.355 61.111 0.00 0.00 37.83 5.03
5040 7678 2.268076 CCCAAACCCAACTGGCGAG 61.268 63.158 0.00 0.00 37.83 5.03
5041 7679 2.203422 CCCAAACCCAACTGGCGA 60.203 61.111 0.00 0.00 37.83 5.54
5042 7680 2.203422 TCCCAAACCCAACTGGCG 60.203 61.111 0.00 0.00 37.83 5.69
5045 7683 2.065899 TGTTCTCCCAAACCCAACTG 57.934 50.000 0.00 0.00 0.00 3.16
5068 7710 0.384230 CACGACACGACAACCATTGC 60.384 55.000 0.00 0.00 0.00 3.56
5083 7725 0.737367 CTCATTCAGCCGAAGCACGA 60.737 55.000 4.96 0.00 45.77 4.35
5087 7729 1.012841 CTTCCTCATTCAGCCGAAGC 58.987 55.000 0.00 0.00 33.74 3.86
5092 7735 1.034292 GGCACCTTCCTCATTCAGCC 61.034 60.000 0.00 0.00 0.00 4.85
5095 7738 1.299648 CCGGCACCTTCCTCATTCA 59.700 57.895 0.00 0.00 0.00 2.57
5099 7742 3.003173 CTCCCGGCACCTTCCTCA 61.003 66.667 0.00 0.00 0.00 3.86
5103 7746 4.097361 GGTCCTCCCGGCACCTTC 62.097 72.222 0.00 0.00 31.60 3.46
5122 7765 4.671377 CGGTGATGATATTGTTGGGTTTG 58.329 43.478 0.00 0.00 0.00 2.93
5125 7768 2.297701 GCGGTGATGATATTGTTGGGT 58.702 47.619 0.00 0.00 0.00 4.51
5126 7769 1.608590 GGCGGTGATGATATTGTTGGG 59.391 52.381 0.00 0.00 0.00 4.12
5128 7771 2.033299 GGTGGCGGTGATGATATTGTTG 59.967 50.000 0.00 0.00 0.00 3.33
5130 7773 1.490490 AGGTGGCGGTGATGATATTGT 59.510 47.619 0.00 0.00 0.00 2.71
5131 7774 2.146342 GAGGTGGCGGTGATGATATTG 58.854 52.381 0.00 0.00 0.00 1.90
5133 7776 1.070758 GTGAGGTGGCGGTGATGATAT 59.929 52.381 0.00 0.00 0.00 1.63
5134 7777 0.464036 GTGAGGTGGCGGTGATGATA 59.536 55.000 0.00 0.00 0.00 2.15
5135 7778 1.221840 GTGAGGTGGCGGTGATGAT 59.778 57.895 0.00 0.00 0.00 2.45
5136 7779 2.171209 CTGTGAGGTGGCGGTGATGA 62.171 60.000 0.00 0.00 0.00 2.92
5137 7780 1.742880 CTGTGAGGTGGCGGTGATG 60.743 63.158 0.00 0.00 0.00 3.07
5138 7781 2.665000 CTGTGAGGTGGCGGTGAT 59.335 61.111 0.00 0.00 0.00 3.06
5139 7782 4.314440 GCTGTGAGGTGGCGGTGA 62.314 66.667 0.00 0.00 0.00 4.02
5143 7786 4.767255 GAGGGCTGTGAGGTGGCG 62.767 72.222 0.00 0.00 0.00 5.69
5144 7787 4.416738 GGAGGGCTGTGAGGTGGC 62.417 72.222 0.00 0.00 0.00 5.01
5165 7808 1.224592 GGTCATGGTGAATCCCGCT 59.775 57.895 0.00 0.00 34.77 5.52
5168 7811 4.762251 GCTAATAAGGTCATGGTGAATCCC 59.238 45.833 0.00 0.00 34.77 3.85
5169 7812 5.376625 TGCTAATAAGGTCATGGTGAATCC 58.623 41.667 0.00 0.00 0.00 3.01
5187 7830 0.988063 TGGCTACCCACACATGCTAA 59.012 50.000 0.00 0.00 35.79 3.09
5188 7831 0.988063 TTGGCTACCCACACATGCTA 59.012 50.000 0.00 0.00 41.97 3.49
5190 7833 0.457035 CATTGGCTACCCACACATGC 59.543 55.000 0.00 0.00 41.97 4.06
5191 7834 1.105457 CCATTGGCTACCCACACATG 58.895 55.000 0.00 0.00 41.97 3.21
5192 7835 0.998928 TCCATTGGCTACCCACACAT 59.001 50.000 0.00 0.00 41.97 3.21
5193 7836 0.998928 ATCCATTGGCTACCCACACA 59.001 50.000 0.00 0.00 41.97 3.72
5194 7837 3.290948 TTATCCATTGGCTACCCACAC 57.709 47.619 0.00 0.00 41.97 3.82
5195 7838 3.897239 CTTTATCCATTGGCTACCCACA 58.103 45.455 0.00 0.00 41.97 4.17
5202 7845 4.025360 TGATTGTGCTTTATCCATTGGCT 58.975 39.130 0.00 0.00 0.00 4.75
5211 7854 5.374921 CCATCCTCTCTGATTGTGCTTTAT 58.625 41.667 0.00 0.00 0.00 1.40
5231 7874 4.592192 CGAGATCGTGGCGGCCAT 62.592 66.667 26.68 9.53 35.28 4.40
5262 7906 0.171679 TGGTACCACACGATAGCACG 59.828 55.000 11.60 0.00 42.67 5.34
5264 7908 0.174845 GCTGGTACCACACGATAGCA 59.825 55.000 11.60 0.00 42.67 3.49
5272 7916 1.369692 CACGAAGGCTGGTACCACA 59.630 57.895 11.60 0.00 0.00 4.17
5290 7934 3.309138 CGAGCATGGCTATATTCATCAGC 59.691 47.826 0.00 0.00 39.88 4.26
5292 7936 3.261643 ACCGAGCATGGCTATATTCATCA 59.738 43.478 0.00 0.00 39.88 3.07
5301 7945 0.036164 AAACACACCGAGCATGGCTA 59.964 50.000 0.00 0.00 39.88 3.93
5302 7946 1.228245 AAACACACCGAGCATGGCT 60.228 52.632 0.00 0.00 43.88 4.75
5303 7947 1.081242 CAAACACACCGAGCATGGC 60.081 57.895 0.00 0.00 0.00 4.40
5304 7948 0.667993 AACAAACACACCGAGCATGG 59.332 50.000 0.00 0.00 0.00 3.66
5305 7949 1.603802 AGAACAAACACACCGAGCATG 59.396 47.619 0.00 0.00 0.00 4.06
5306 7950 1.967319 AGAACAAACACACCGAGCAT 58.033 45.000 0.00 0.00 0.00 3.79
5307 7951 1.400142 CAAGAACAAACACACCGAGCA 59.600 47.619 0.00 0.00 0.00 4.26
5308 7952 1.400494 ACAAGAACAAACACACCGAGC 59.600 47.619 0.00 0.00 0.00 5.03
5310 7954 2.160615 CACACAAGAACAAACACACCGA 59.839 45.455 0.00 0.00 0.00 4.69
5311 7955 2.095466 ACACACAAGAACAAACACACCG 60.095 45.455 0.00 0.00 0.00 4.94
5312 7956 3.241701 CACACACAAGAACAAACACACC 58.758 45.455 0.00 0.00 0.00 4.16
5313 7957 2.661195 GCACACACAAGAACAAACACAC 59.339 45.455 0.00 0.00 0.00 3.82
5330 7974 2.291209 ATTGGATCAACACCAGCACA 57.709 45.000 0.00 0.00 38.70 4.57
5331 7975 3.081061 TGTATTGGATCAACACCAGCAC 58.919 45.455 0.00 0.00 38.70 4.40
5334 7978 5.649395 ACTGAATGTATTGGATCAACACCAG 59.351 40.000 0.00 7.09 38.70 4.00
5337 7981 9.722056 GATAAACTGAATGTATTGGATCAACAC 57.278 33.333 0.00 0.00 0.00 3.32
5407 8052 8.424731 GTTGCACAATTCTAATTTTAACCGAAG 58.575 33.333 0.00 0.00 0.00 3.79
5422 8067 8.182227 GGTAACTCCTAATTAGTTGCACAATTC 58.818 37.037 11.50 0.00 40.18 2.17
5448 8093 5.633830 AACAATGGCATCAAAGTACTCAG 57.366 39.130 0.00 0.00 0.00 3.35
5506 8151 6.074302 CCGCTACTCAATACACAACATGATAC 60.074 42.308 0.00 0.00 0.00 2.24
5518 8163 4.768130 TCTATGCTCCGCTACTCAATAC 57.232 45.455 0.00 0.00 0.00 1.89
5523 8168 3.984633 GTGAAATCTATGCTCCGCTACTC 59.015 47.826 0.00 0.00 0.00 2.59
5536 8181 1.004979 CCCGGGGTTTGGTGAAATCTA 59.995 52.381 14.71 0.00 0.00 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.