Multiple sequence alignment - TraesCS3B01G554700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G554700 chr3B 100.000 2450 0 0 1 2450 788509604 788512053 0.000000e+00 4525.0
1 TraesCS3B01G554700 chr3B 90.312 1796 140 21 623 2396 813307664 813305881 0.000000e+00 2322.0
2 TraesCS3B01G554700 chr3B 90.897 1450 107 5 953 2401 27487902 27486477 0.000000e+00 1923.0
3 TraesCS3B01G554700 chr3B 92.072 883 67 2 954 1833 809059189 809058307 0.000000e+00 1240.0
4 TraesCS3B01G554700 chr3B 91.516 884 72 2 954 1835 788406222 788405340 0.000000e+00 1214.0
5 TraesCS3B01G554700 chr3B 92.105 798 61 1 955 1750 818052903 818052106 0.000000e+00 1123.0
6 TraesCS3B01G554700 chr3B 88.597 877 63 9 1539 2395 825545785 825544926 0.000000e+00 1031.0
7 TraesCS3B01G554700 chr3B 86.824 888 69 23 620 1471 825572730 825571855 0.000000e+00 948.0
8 TraesCS3B01G554700 chr3B 84.635 794 85 25 841 1604 824380201 824379415 0.000000e+00 756.0
9 TraesCS3B01G554700 chr3B 89.974 379 32 3 1820 2198 818052018 818051646 3.660000e-133 484.0
10 TraesCS3B01G554700 chr3B 90.962 343 23 7 611 946 809059570 809059229 2.870000e-124 455.0
11 TraesCS3B01G554700 chr3B 89.939 328 32 1 620 946 813269812 813269485 2.910000e-114 422.0
12 TraesCS3B01G554700 chr3B 88.788 330 33 2 620 946 788406589 788406261 3.790000e-108 401.0
13 TraesCS3B01G554700 chr3B 87.896 347 31 6 611 946 818053290 818052944 4.910000e-107 398.0
14 TraesCS3B01G554700 chrUn 89.171 905 74 11 954 1835 364044881 364045784 0.000000e+00 1107.0
15 TraesCS3B01G554700 chrUn 89.481 751 55 3 1193 1943 380530548 380529822 0.000000e+00 928.0
16 TraesCS3B01G554700 chrUn 86.986 730 48 14 789 1471 232147738 232147009 0.000000e+00 778.0
17 TraesCS3B01G554700 chrUn 87.769 605 50 3 1193 1797 342673372 342672792 0.000000e+00 686.0
18 TraesCS3B01G554700 chrUn 87.769 605 50 3 1193 1797 473078030 473077450 0.000000e+00 686.0
19 TraesCS3B01G554700 chrUn 85.294 340 31 9 611 946 342674447 342674123 1.400000e-87 333.0
20 TraesCS3B01G554700 chrUn 85.000 340 32 8 611 946 388617801 388618125 6.530000e-86 327.0
21 TraesCS3B01G554700 chrUn 89.286 168 12 1 2161 2328 209282339 209282500 3.190000e-49 206.0
22 TraesCS3B01G554700 chrUn 88.199 161 16 1 789 946 291110909 291111069 3.220000e-44 189.0
23 TraesCS3B01G554700 chrUn 88.800 125 10 2 825 946 364044719 364044842 1.520000e-32 150.0
24 TraesCS3B01G554700 chr7A 80.635 315 50 9 1888 2199 85091125 85090819 1.460000e-57 233.0
25 TraesCS3B01G554700 chr7A 80.608 263 42 7 1879 2136 430325972 430326230 6.910000e-46 195.0
26 TraesCS3B01G554700 chr7B 89.286 168 12 1 2161 2328 642242472 642242633 3.190000e-49 206.0
27 TraesCS3B01G554700 chr7D 80.608 263 42 7 1879 2136 382289110 382289368 6.910000e-46 195.0
28 TraesCS3B01G554700 chr5A 77.744 328 57 12 1875 2199 32163959 32164273 1.160000e-43 187.0
29 TraesCS3B01G554700 chr5B 76.101 318 65 7 1876 2192 115326149 115325842 3.260000e-34 156.0
30 TraesCS3B01G554700 chr5B 87.931 58 4 1 469 526 445185248 445185302 5.650000e-07 65.8
31 TraesCS3B01G554700 chr5B 86.441 59 4 2 469 526 315897525 315897470 7.320000e-06 62.1
32 TraesCS3B01G554700 chr4B 96.000 50 2 0 529 578 90720010 90720059 5.620000e-12 82.4
33 TraesCS3B01G554700 chr4B 91.111 45 2 2 529 572 7829495 7829452 2.630000e-05 60.2
34 TraesCS3B01G554700 chr6B 100.000 28 0 0 545 572 37637834 37637807 4.000000e-03 52.8
35 TraesCS3B01G554700 chr6A 100.000 28 0 0 499 526 571843093 571843066 4.000000e-03 52.8
36 TraesCS3B01G554700 chr3A 100.000 28 0 0 499 526 353128440 353128413 4.000000e-03 52.8
37 TraesCS3B01G554700 chr1A 100.000 28 0 0 499 526 61121675 61121702 4.000000e-03 52.8
38 TraesCS3B01G554700 chr1A 100.000 28 0 0 545 572 293708612 293708585 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G554700 chr3B 788509604 788512053 2449 False 4525.000000 4525 100.000000 1 2450 1 chr3B.!!$F1 2449
1 TraesCS3B01G554700 chr3B 813305881 813307664 1783 True 2322.000000 2322 90.312000 623 2396 1 chr3B.!!$R3 1773
2 TraesCS3B01G554700 chr3B 27486477 27487902 1425 True 1923.000000 1923 90.897000 953 2401 1 chr3B.!!$R1 1448
3 TraesCS3B01G554700 chr3B 825544926 825545785 859 True 1031.000000 1031 88.597000 1539 2395 1 chr3B.!!$R5 856
4 TraesCS3B01G554700 chr3B 825571855 825572730 875 True 948.000000 948 86.824000 620 1471 1 chr3B.!!$R6 851
5 TraesCS3B01G554700 chr3B 809058307 809059570 1263 True 847.500000 1240 91.517000 611 1833 2 chr3B.!!$R8 1222
6 TraesCS3B01G554700 chr3B 788405340 788406589 1249 True 807.500000 1214 90.152000 620 1835 2 chr3B.!!$R7 1215
7 TraesCS3B01G554700 chr3B 824379415 824380201 786 True 756.000000 756 84.635000 841 1604 1 chr3B.!!$R4 763
8 TraesCS3B01G554700 chr3B 818051646 818053290 1644 True 668.333333 1123 89.991667 611 2198 3 chr3B.!!$R9 1587
9 TraesCS3B01G554700 chrUn 380529822 380530548 726 True 928.000000 928 89.481000 1193 1943 1 chrUn.!!$R2 750
10 TraesCS3B01G554700 chrUn 232147009 232147738 729 True 778.000000 778 86.986000 789 1471 1 chrUn.!!$R1 682
11 TraesCS3B01G554700 chrUn 473077450 473078030 580 True 686.000000 686 87.769000 1193 1797 1 chrUn.!!$R3 604
12 TraesCS3B01G554700 chrUn 364044719 364045784 1065 False 628.500000 1107 88.985500 825 1835 2 chrUn.!!$F4 1010
13 TraesCS3B01G554700 chrUn 342672792 342674447 1655 True 509.500000 686 86.531500 611 1797 2 chrUn.!!$R4 1186

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
156 157 0.108138 GTCAGAATAGCGGCCACACT 60.108 55.0 2.24 0.0 0.0 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1692 2307 0.530744 AGATCTGCGCGTTGGAGTTA 59.469 50.0 8.43 0.0 37.31 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 8.255394 TCACAGTCTATAAATGTGTGAACATG 57.745 34.615 5.65 0.00 43.39 3.21
47 48 7.877612 TCACAGTCTATAAATGTGTGAACATGT 59.122 33.333 0.00 0.00 43.39 3.21
48 49 8.506437 CACAGTCTATAAATGTGTGAACATGTT 58.494 33.333 11.78 11.78 40.84 2.71
49 50 9.066892 ACAGTCTATAAATGTGTGAACATGTTT 57.933 29.630 13.36 0.00 0.00 2.83
50 51 9.897744 CAGTCTATAAATGTGTGAACATGTTTT 57.102 29.630 13.36 3.64 0.00 2.43
52 53 9.891828 GTCTATAAATGTGTGAACATGTTTTCA 57.108 29.630 13.36 11.91 32.94 2.69
107 108 8.716646 AGAAAACAGGGTCAAAATAAAAACAG 57.283 30.769 0.00 0.00 0.00 3.16
108 109 7.768582 AGAAAACAGGGTCAAAATAAAAACAGG 59.231 33.333 0.00 0.00 0.00 4.00
109 110 6.553953 AACAGGGTCAAAATAAAAACAGGT 57.446 33.333 0.00 0.00 0.00 4.00
110 111 5.912892 ACAGGGTCAAAATAAAAACAGGTG 58.087 37.500 0.00 0.00 0.00 4.00
111 112 5.659079 ACAGGGTCAAAATAAAAACAGGTGA 59.341 36.000 0.00 0.00 0.00 4.02
112 113 6.155393 ACAGGGTCAAAATAAAAACAGGTGAA 59.845 34.615 0.00 0.00 0.00 3.18
113 114 7.044798 CAGGGTCAAAATAAAAACAGGTGAAA 58.955 34.615 0.00 0.00 0.00 2.69
114 115 7.550906 CAGGGTCAAAATAAAAACAGGTGAAAA 59.449 33.333 0.00 0.00 0.00 2.29
115 116 7.551262 AGGGTCAAAATAAAAACAGGTGAAAAC 59.449 33.333 0.00 0.00 0.00 2.43
116 117 7.201661 GGGTCAAAATAAAAACAGGTGAAAACC 60.202 37.037 0.00 0.00 0.00 3.27
117 118 7.395645 GTCAAAATAAAAACAGGTGAAAACCG 58.604 34.615 0.00 0.00 34.28 4.44
118 119 5.977171 AAATAAAAACAGGTGAAAACCGC 57.023 34.783 0.00 0.00 34.28 5.68
119 120 4.657436 ATAAAAACAGGTGAAAACCGCA 57.343 36.364 0.00 0.00 34.28 5.69
120 121 3.320673 AAAAACAGGTGAAAACCGCAA 57.679 38.095 0.00 0.00 34.28 4.85
121 122 2.577449 AAACAGGTGAAAACCGCAAG 57.423 45.000 0.00 0.00 34.28 4.01
122 123 1.757682 AACAGGTGAAAACCGCAAGA 58.242 45.000 0.00 0.00 43.02 3.02
123 124 1.981256 ACAGGTGAAAACCGCAAGAT 58.019 45.000 0.00 0.00 43.02 2.40
124 125 1.608590 ACAGGTGAAAACCGCAAGATG 59.391 47.619 0.00 0.00 43.02 2.90
125 126 1.068333 CAGGTGAAAACCGCAAGATGG 60.068 52.381 0.00 0.00 43.02 3.51
126 127 0.958822 GGTGAAAACCGCAAGATGGT 59.041 50.000 0.00 0.00 42.98 3.55
127 128 1.335872 GGTGAAAACCGCAAGATGGTG 60.336 52.381 0.00 0.00 40.35 4.17
128 129 1.336755 GTGAAAACCGCAAGATGGTGT 59.663 47.619 0.00 0.00 40.35 4.16
129 130 1.336440 TGAAAACCGCAAGATGGTGTG 59.664 47.619 0.00 0.00 40.35 3.82
132 133 2.672651 CCGCAAGATGGTGTGGCA 60.673 61.111 0.00 0.00 42.01 4.92
133 134 2.693762 CCGCAAGATGGTGTGGCAG 61.694 63.158 0.00 0.00 42.01 4.85
134 135 1.672030 CGCAAGATGGTGTGGCAGA 60.672 57.895 0.00 0.00 43.02 4.26
135 136 1.236616 CGCAAGATGGTGTGGCAGAA 61.237 55.000 0.00 0.00 43.02 3.02
136 137 0.242017 GCAAGATGGTGTGGCAGAAC 59.758 55.000 0.00 0.00 0.00 3.01
137 138 0.518636 CAAGATGGTGTGGCAGAACG 59.481 55.000 0.00 0.00 0.00 3.95
138 139 0.108585 AAGATGGTGTGGCAGAACGT 59.891 50.000 0.00 0.00 0.00 3.99
139 140 0.320771 AGATGGTGTGGCAGAACGTC 60.321 55.000 13.65 13.65 0.00 4.34
140 141 0.602638 GATGGTGTGGCAGAACGTCA 60.603 55.000 16.30 0.12 0.00 4.35
141 142 0.603707 ATGGTGTGGCAGAACGTCAG 60.604 55.000 0.00 0.00 0.00 3.51
142 143 1.069090 GGTGTGGCAGAACGTCAGA 59.931 57.895 0.00 0.00 0.00 3.27
143 144 0.531974 GGTGTGGCAGAACGTCAGAA 60.532 55.000 0.00 0.00 0.00 3.02
144 145 1.512926 GTGTGGCAGAACGTCAGAAT 58.487 50.000 0.00 0.00 0.00 2.40
145 146 2.611971 GGTGTGGCAGAACGTCAGAATA 60.612 50.000 0.00 0.00 0.00 1.75
146 147 2.668457 GTGTGGCAGAACGTCAGAATAG 59.332 50.000 0.00 0.00 0.00 1.73
147 148 1.661112 GTGGCAGAACGTCAGAATAGC 59.339 52.381 0.00 0.00 0.00 2.97
148 149 0.924090 GGCAGAACGTCAGAATAGCG 59.076 55.000 0.00 0.00 0.00 4.26
149 150 0.924090 GCAGAACGTCAGAATAGCGG 59.076 55.000 0.00 0.00 0.00 5.52
150 151 0.924090 CAGAACGTCAGAATAGCGGC 59.076 55.000 0.00 0.00 0.00 6.53
151 152 0.179108 AGAACGTCAGAATAGCGGCC 60.179 55.000 0.00 0.00 0.00 6.13
152 153 0.459585 GAACGTCAGAATAGCGGCCA 60.460 55.000 2.24 0.00 0.00 5.36
153 154 0.739813 AACGTCAGAATAGCGGCCAC 60.740 55.000 2.24 0.00 0.00 5.01
154 155 1.153647 CGTCAGAATAGCGGCCACA 60.154 57.895 2.24 0.00 0.00 4.17
155 156 1.421410 CGTCAGAATAGCGGCCACAC 61.421 60.000 2.24 0.00 0.00 3.82
156 157 0.108138 GTCAGAATAGCGGCCACACT 60.108 55.000 2.24 0.00 0.00 3.55
157 158 1.136305 GTCAGAATAGCGGCCACACTA 59.864 52.381 2.24 0.90 0.00 2.74
158 159 1.409064 TCAGAATAGCGGCCACACTAG 59.591 52.381 2.24 0.00 0.00 2.57
159 160 1.137086 CAGAATAGCGGCCACACTAGT 59.863 52.381 2.24 0.00 0.00 2.57
160 161 1.409427 AGAATAGCGGCCACACTAGTC 59.591 52.381 13.98 13.98 34.52 2.59
161 162 0.464452 AATAGCGGCCACACTAGTCC 59.536 55.000 2.24 0.00 0.00 3.85
162 163 1.400530 ATAGCGGCCACACTAGTCCC 61.401 60.000 2.24 0.00 0.00 4.46
163 164 4.468689 GCGGCCACACTAGTCCCC 62.469 72.222 2.24 0.00 0.00 4.81
164 165 3.782443 CGGCCACACTAGTCCCCC 61.782 72.222 2.24 0.00 0.00 5.40
186 187 2.644887 GCTTTGGTGCCTGATGTGA 58.355 52.632 0.00 0.00 0.00 3.58
187 188 0.524862 GCTTTGGTGCCTGATGTGAG 59.475 55.000 0.00 0.00 0.00 3.51
188 189 1.171308 CTTTGGTGCCTGATGTGAGG 58.829 55.000 0.00 0.00 36.03 3.86
194 195 2.124403 CCTGATGTGAGGCAGCCC 60.124 66.667 8.22 0.00 31.34 5.19
195 196 2.677289 CCTGATGTGAGGCAGCCCT 61.677 63.158 8.22 0.00 46.74 5.19
196 197 1.302285 CTGATGTGAGGCAGCCCTT 59.698 57.895 8.22 0.00 43.12 3.95
197 198 0.747283 CTGATGTGAGGCAGCCCTTC 60.747 60.000 8.22 0.00 43.12 3.46
198 199 1.203441 TGATGTGAGGCAGCCCTTCT 61.203 55.000 8.22 0.00 43.12 2.85
199 200 0.833287 GATGTGAGGCAGCCCTTCTA 59.167 55.000 8.22 0.00 43.12 2.10
200 201 0.543749 ATGTGAGGCAGCCCTTCTAC 59.456 55.000 8.22 0.89 43.12 2.59
201 202 0.835971 TGTGAGGCAGCCCTTCTACA 60.836 55.000 8.22 3.75 43.12 2.74
202 203 0.324943 GTGAGGCAGCCCTTCTACAA 59.675 55.000 8.22 0.00 43.12 2.41
203 204 0.324943 TGAGGCAGCCCTTCTACAAC 59.675 55.000 8.22 0.00 43.12 3.32
204 205 0.324943 GAGGCAGCCCTTCTACAACA 59.675 55.000 8.22 0.00 43.12 3.33
205 206 0.995024 AGGCAGCCCTTCTACAACAT 59.005 50.000 8.22 0.00 38.74 2.71
206 207 1.098050 GGCAGCCCTTCTACAACATG 58.902 55.000 0.00 0.00 0.00 3.21
207 208 1.098050 GCAGCCCTTCTACAACATGG 58.902 55.000 0.00 0.00 0.00 3.66
208 209 1.340017 GCAGCCCTTCTACAACATGGA 60.340 52.381 0.00 0.00 0.00 3.41
209 210 2.636830 CAGCCCTTCTACAACATGGAG 58.363 52.381 0.00 0.00 0.00 3.86
210 211 2.026822 CAGCCCTTCTACAACATGGAGT 60.027 50.000 0.00 0.00 28.14 3.85
211 212 2.026822 AGCCCTTCTACAACATGGAGTG 60.027 50.000 0.00 0.00 28.14 3.51
212 213 2.027192 GCCCTTCTACAACATGGAGTGA 60.027 50.000 0.00 0.00 28.14 3.41
213 214 3.370953 GCCCTTCTACAACATGGAGTGAT 60.371 47.826 0.00 0.00 28.14 3.06
214 215 4.446371 CCCTTCTACAACATGGAGTGATC 58.554 47.826 0.00 0.00 28.14 2.92
215 216 4.446371 CCTTCTACAACATGGAGTGATCC 58.554 47.826 0.00 0.00 28.14 3.36
216 217 4.080919 CCTTCTACAACATGGAGTGATCCA 60.081 45.833 0.00 0.00 44.85 3.41
217 218 4.471904 TCTACAACATGGAGTGATCCAC 57.528 45.455 0.00 0.00 43.37 4.02
219 220 3.063510 ACAACATGGAGTGATCCACTG 57.936 47.619 4.14 2.77 45.44 3.66
232 233 2.280389 CACTGCAGTGGTGTCGCT 60.280 61.111 34.65 0.00 42.10 4.93
237 238 2.357517 CAGTGGTGTCGCTGGACC 60.358 66.667 0.00 0.00 45.14 4.46
238 239 2.842462 AGTGGTGTCGCTGGACCA 60.842 61.111 0.00 0.00 42.73 4.02
239 240 2.110213 GTGGTGTCGCTGGACCAA 59.890 61.111 0.00 0.00 43.91 3.67
240 241 1.961277 GTGGTGTCGCTGGACCAAG 60.961 63.158 0.00 0.00 43.91 3.61
241 242 2.426023 GGTGTCGCTGGACCAAGT 59.574 61.111 0.00 0.00 42.73 3.16
242 243 1.961277 GGTGTCGCTGGACCAAGTG 60.961 63.158 0.00 0.00 42.73 3.16
243 244 1.961277 GTGTCGCTGGACCAAGTGG 60.961 63.158 0.00 0.00 42.73 4.00
253 254 2.358247 CCAAGTGGTTCGTCCCCG 60.358 66.667 0.00 0.00 34.77 5.73
254 255 3.047877 CAAGTGGTTCGTCCCCGC 61.048 66.667 0.00 0.00 34.77 6.13
255 256 4.675029 AAGTGGTTCGTCCCCGCG 62.675 66.667 0.00 0.00 37.56 6.46
274 275 3.193757 CGACGAAGATCGGTCCCA 58.806 61.111 4.66 0.00 45.59 4.37
275 276 1.734137 CGACGAAGATCGGTCCCAT 59.266 57.895 4.66 0.00 45.59 4.00
276 277 0.595053 CGACGAAGATCGGTCCCATG 60.595 60.000 4.66 0.00 45.59 3.66
277 278 0.249489 GACGAAGATCGGTCCCATGG 60.249 60.000 4.14 4.14 45.59 3.66
278 279 1.069765 CGAAGATCGGTCCCATGGG 59.930 63.158 26.30 26.30 36.00 4.00
279 280 1.399744 CGAAGATCGGTCCCATGGGA 61.400 60.000 30.62 30.62 37.89 4.37
281 282 5.919926 ACGAAGATCGGTCCCATGGGATA 62.920 52.174 35.93 23.80 45.59 2.59
290 291 1.699634 TCCCATGGGATAGCAACTAGC 59.300 52.381 30.62 0.00 40.98 3.42
291 292 1.421268 CCCATGGGATAGCAACTAGCA 59.579 52.381 28.27 0.00 41.52 3.49
292 293 2.551721 CCCATGGGATAGCAACTAGCAG 60.552 54.545 28.27 0.00 41.52 4.24
293 294 5.698593 CCCATGGGATAGCAACTAGCAGG 62.699 56.522 28.27 0.00 41.52 4.85
301 302 2.762535 GCAACTAGCAGGTGGAGTAA 57.237 50.000 3.84 0.00 44.79 2.24
302 303 2.622436 GCAACTAGCAGGTGGAGTAAG 58.378 52.381 3.84 0.00 44.79 2.34
303 304 2.233922 GCAACTAGCAGGTGGAGTAAGA 59.766 50.000 3.84 0.00 44.79 2.10
304 305 3.851098 CAACTAGCAGGTGGAGTAAGAC 58.149 50.000 0.00 0.00 0.00 3.01
305 306 3.170991 ACTAGCAGGTGGAGTAAGACA 57.829 47.619 0.00 0.00 0.00 3.41
306 307 3.507411 ACTAGCAGGTGGAGTAAGACAA 58.493 45.455 0.00 0.00 0.00 3.18
307 308 3.511934 ACTAGCAGGTGGAGTAAGACAAG 59.488 47.826 0.00 0.00 0.00 3.16
308 309 2.609747 AGCAGGTGGAGTAAGACAAGA 58.390 47.619 0.00 0.00 0.00 3.02
309 310 2.564947 AGCAGGTGGAGTAAGACAAGAG 59.435 50.000 0.00 0.00 0.00 2.85
310 311 2.563179 GCAGGTGGAGTAAGACAAGAGA 59.437 50.000 0.00 0.00 0.00 3.10
311 312 3.367910 GCAGGTGGAGTAAGACAAGAGAG 60.368 52.174 0.00 0.00 0.00 3.20
312 313 2.829120 AGGTGGAGTAAGACAAGAGAGC 59.171 50.000 0.00 0.00 0.00 4.09
313 314 2.093921 GGTGGAGTAAGACAAGAGAGCC 60.094 54.545 0.00 0.00 0.00 4.70
314 315 2.829120 GTGGAGTAAGACAAGAGAGCCT 59.171 50.000 0.00 0.00 0.00 4.58
315 316 3.259625 GTGGAGTAAGACAAGAGAGCCTT 59.740 47.826 0.00 0.00 34.91 4.35
326 327 4.836825 CAAGAGAGCCTTGGTTAAGATGA 58.163 43.478 0.00 0.00 46.54 2.92
327 328 4.751767 AGAGAGCCTTGGTTAAGATGAG 57.248 45.455 0.00 0.00 35.92 2.90
328 329 4.357325 AGAGAGCCTTGGTTAAGATGAGA 58.643 43.478 0.00 0.00 35.92 3.27
329 330 4.780021 AGAGAGCCTTGGTTAAGATGAGAA 59.220 41.667 0.00 0.00 35.92 2.87
330 331 5.249393 AGAGAGCCTTGGTTAAGATGAGAAA 59.751 40.000 0.00 0.00 35.92 2.52
331 332 5.880901 AGAGCCTTGGTTAAGATGAGAAAA 58.119 37.500 0.00 0.00 35.92 2.29
332 333 6.306987 AGAGCCTTGGTTAAGATGAGAAAAA 58.693 36.000 0.00 0.00 35.92 1.94
333 334 6.950619 AGAGCCTTGGTTAAGATGAGAAAAAT 59.049 34.615 0.00 0.00 35.92 1.82
334 335 7.452813 AGAGCCTTGGTTAAGATGAGAAAAATT 59.547 33.333 0.00 0.00 35.92 1.82
335 336 7.606349 AGCCTTGGTTAAGATGAGAAAAATTC 58.394 34.615 0.00 0.00 35.92 2.17
336 337 6.813649 GCCTTGGTTAAGATGAGAAAAATTCC 59.186 38.462 0.00 0.00 35.92 3.01
337 338 7.525360 GCCTTGGTTAAGATGAGAAAAATTCCA 60.525 37.037 0.00 0.00 35.92 3.53
338 339 8.367156 CCTTGGTTAAGATGAGAAAAATTCCAA 58.633 33.333 0.00 0.00 35.92 3.53
339 340 9.762933 CTTGGTTAAGATGAGAAAAATTCCAAA 57.237 29.630 0.00 0.00 35.92 3.28
341 342 9.927668 TGGTTAAGATGAGAAAAATTCCAAATC 57.072 29.630 0.00 0.00 0.00 2.17
342 343 9.927668 GGTTAAGATGAGAAAAATTCCAAATCA 57.072 29.630 0.00 0.00 0.00 2.57
346 347 9.662947 AAGATGAGAAAAATTCCAAATCATTCC 57.337 29.630 0.00 0.00 0.00 3.01
347 348 7.977853 AGATGAGAAAAATTCCAAATCATTCCG 59.022 33.333 0.00 0.00 0.00 4.30
348 349 5.868801 TGAGAAAAATTCCAAATCATTCCGC 59.131 36.000 0.00 0.00 0.00 5.54
349 350 6.041423 AGAAAAATTCCAAATCATTCCGCT 57.959 33.333 0.00 0.00 0.00 5.52
350 351 6.466812 AGAAAAATTCCAAATCATTCCGCTT 58.533 32.000 0.00 0.00 0.00 4.68
351 352 6.591448 AGAAAAATTCCAAATCATTCCGCTTC 59.409 34.615 0.00 0.00 0.00 3.86
352 353 5.404466 AAATTCCAAATCATTCCGCTTCA 57.596 34.783 0.00 0.00 0.00 3.02
353 354 5.603170 AATTCCAAATCATTCCGCTTCAT 57.397 34.783 0.00 0.00 0.00 2.57
354 355 4.374843 TTCCAAATCATTCCGCTTCATG 57.625 40.909 0.00 0.00 0.00 3.07
355 356 2.099592 TCCAAATCATTCCGCTTCATGC 59.900 45.455 0.00 0.00 38.57 4.06
356 357 2.466846 CAAATCATTCCGCTTCATGCC 58.533 47.619 0.00 0.00 38.78 4.40
357 358 2.062971 AATCATTCCGCTTCATGCCT 57.937 45.000 0.00 0.00 38.78 4.75
358 359 1.602311 ATCATTCCGCTTCATGCCTC 58.398 50.000 0.00 0.00 38.78 4.70
359 360 0.464373 TCATTCCGCTTCATGCCTCC 60.464 55.000 0.00 0.00 38.78 4.30
360 361 0.749091 CATTCCGCTTCATGCCTCCA 60.749 55.000 0.00 0.00 38.78 3.86
361 362 0.749454 ATTCCGCTTCATGCCTCCAC 60.749 55.000 0.00 0.00 38.78 4.02
362 363 2.819984 TTCCGCTTCATGCCTCCACC 62.820 60.000 0.00 0.00 38.78 4.61
363 364 3.197790 CGCTTCATGCCTCCACCG 61.198 66.667 0.00 0.00 38.78 4.94
364 365 2.045926 GCTTCATGCCTCCACCGT 60.046 61.111 0.00 0.00 35.15 4.83
365 366 1.220749 GCTTCATGCCTCCACCGTA 59.779 57.895 0.00 0.00 35.15 4.02
366 367 1.090052 GCTTCATGCCTCCACCGTAC 61.090 60.000 0.00 0.00 35.15 3.67
367 368 0.462047 CTTCATGCCTCCACCGTACC 60.462 60.000 0.00 0.00 0.00 3.34
368 369 1.906105 TTCATGCCTCCACCGTACCC 61.906 60.000 0.00 0.00 0.00 3.69
369 370 2.285069 ATGCCTCCACCGTACCCA 60.285 61.111 0.00 0.00 0.00 4.51
370 371 1.921346 ATGCCTCCACCGTACCCAA 60.921 57.895 0.00 0.00 0.00 4.12
371 372 2.046604 GCCTCCACCGTACCCAAC 60.047 66.667 0.00 0.00 0.00 3.77
372 373 2.666812 CCTCCACCGTACCCAACC 59.333 66.667 0.00 0.00 0.00 3.77
373 374 2.218454 CCTCCACCGTACCCAACCA 61.218 63.158 0.00 0.00 0.00 3.67
374 375 1.004200 CTCCACCGTACCCAACCAC 60.004 63.158 0.00 0.00 0.00 4.16
375 376 2.032987 CCACCGTACCCAACCACC 59.967 66.667 0.00 0.00 0.00 4.61
376 377 2.522367 CCACCGTACCCAACCACCT 61.522 63.158 0.00 0.00 0.00 4.00
377 378 1.193462 CCACCGTACCCAACCACCTA 61.193 60.000 0.00 0.00 0.00 3.08
378 379 0.248289 CACCGTACCCAACCACCTAG 59.752 60.000 0.00 0.00 0.00 3.02
379 380 0.178924 ACCGTACCCAACCACCTAGT 60.179 55.000 0.00 0.00 0.00 2.57
380 381 1.077005 ACCGTACCCAACCACCTAGTA 59.923 52.381 0.00 0.00 0.00 1.82
381 382 2.292455 ACCGTACCCAACCACCTAGTAT 60.292 50.000 0.00 0.00 0.00 2.12
382 383 2.767960 CCGTACCCAACCACCTAGTATT 59.232 50.000 0.00 0.00 0.00 1.89
383 384 3.960102 CCGTACCCAACCACCTAGTATTA 59.040 47.826 0.00 0.00 0.00 0.98
384 385 4.405358 CCGTACCCAACCACCTAGTATTAA 59.595 45.833 0.00 0.00 0.00 1.40
385 386 5.452356 CCGTACCCAACCACCTAGTATTAAG 60.452 48.000 0.00 0.00 0.00 1.85
386 387 5.127682 CGTACCCAACCACCTAGTATTAAGT 59.872 44.000 0.00 0.00 0.00 2.24
387 388 6.321181 CGTACCCAACCACCTAGTATTAAGTA 59.679 42.308 0.00 0.00 0.00 2.24
388 389 7.014615 CGTACCCAACCACCTAGTATTAAGTAT 59.985 40.741 0.00 0.00 0.00 2.12
389 390 7.133133 ACCCAACCACCTAGTATTAAGTATG 57.867 40.000 0.00 0.00 0.00 2.39
390 391 6.100714 ACCCAACCACCTAGTATTAAGTATGG 59.899 42.308 0.00 0.00 0.00 2.74
391 392 6.328148 CCCAACCACCTAGTATTAAGTATGGA 59.672 42.308 0.00 0.00 0.00 3.41
392 393 7.017254 CCCAACCACCTAGTATTAAGTATGGAT 59.983 40.741 0.00 0.00 0.00 3.41
393 394 8.095169 CCAACCACCTAGTATTAAGTATGGATC 58.905 40.741 0.00 0.00 0.00 3.36
394 395 7.793948 ACCACCTAGTATTAAGTATGGATCC 57.206 40.000 4.20 4.20 0.00 3.36
395 396 6.436532 ACCACCTAGTATTAAGTATGGATCCG 59.563 42.308 7.39 0.00 0.00 4.18
396 397 6.436532 CCACCTAGTATTAAGTATGGATCCGT 59.563 42.308 12.14 12.14 0.00 4.69
397 398 7.362747 CCACCTAGTATTAAGTATGGATCCGTC 60.363 44.444 10.55 2.50 0.00 4.79
398 399 7.176165 CACCTAGTATTAAGTATGGATCCGTCA 59.824 40.741 10.55 0.00 0.00 4.35
399 400 7.894364 ACCTAGTATTAAGTATGGATCCGTCAT 59.106 37.037 10.55 0.00 0.00 3.06
400 401 8.407064 CCTAGTATTAAGTATGGATCCGTCATC 58.593 40.741 10.55 2.76 0.00 2.92
401 402 6.853720 AGTATTAAGTATGGATCCGTCATCG 58.146 40.000 10.55 0.00 31.26 3.84
413 414 2.476873 CGTCATCGGTGTTCCTCTAG 57.523 55.000 0.00 0.00 0.00 2.43
414 415 2.014857 CGTCATCGGTGTTCCTCTAGA 58.985 52.381 0.00 0.00 0.00 2.43
415 416 2.422479 CGTCATCGGTGTTCCTCTAGAA 59.578 50.000 0.00 0.00 0.00 2.10
416 417 3.119602 CGTCATCGGTGTTCCTCTAGAAA 60.120 47.826 0.00 0.00 35.85 2.52
417 418 4.425520 GTCATCGGTGTTCCTCTAGAAAG 58.574 47.826 0.00 0.00 35.85 2.62
418 419 4.158025 GTCATCGGTGTTCCTCTAGAAAGA 59.842 45.833 0.00 0.00 35.85 2.52
419 420 4.158025 TCATCGGTGTTCCTCTAGAAAGAC 59.842 45.833 0.00 0.00 35.85 3.01
420 421 2.824341 TCGGTGTTCCTCTAGAAAGACC 59.176 50.000 11.71 11.71 35.85 3.85
421 422 2.561419 CGGTGTTCCTCTAGAAAGACCA 59.439 50.000 18.60 5.29 38.43 4.02
422 423 3.614390 CGGTGTTCCTCTAGAAAGACCAC 60.614 52.174 18.60 14.48 38.43 4.16
423 424 3.579151 GGTGTTCCTCTAGAAAGACCACT 59.421 47.826 15.34 0.00 38.41 4.00
424 425 4.771054 GGTGTTCCTCTAGAAAGACCACTA 59.229 45.833 15.34 0.00 38.41 2.74
425 426 5.336610 GGTGTTCCTCTAGAAAGACCACTAC 60.337 48.000 15.34 2.77 38.41 2.73
426 427 5.243283 GTGTTCCTCTAGAAAGACCACTACA 59.757 44.000 10.96 2.81 35.85 2.74
427 428 5.477291 TGTTCCTCTAGAAAGACCACTACAG 59.523 44.000 0.00 0.00 35.85 2.74
428 429 5.258216 TCCTCTAGAAAGACCACTACAGT 57.742 43.478 0.00 0.00 0.00 3.55
429 430 6.384342 TCCTCTAGAAAGACCACTACAGTA 57.616 41.667 0.00 0.00 0.00 2.74
430 431 6.787170 TCCTCTAGAAAGACCACTACAGTAA 58.213 40.000 0.00 0.00 0.00 2.24
431 432 7.236529 TCCTCTAGAAAGACCACTACAGTAAA 58.763 38.462 0.00 0.00 0.00 2.01
432 433 7.176340 TCCTCTAGAAAGACCACTACAGTAAAC 59.824 40.741 0.00 0.00 0.00 2.01
433 434 7.177041 CCTCTAGAAAGACCACTACAGTAAACT 59.823 40.741 0.00 0.00 0.00 2.66
434 435 9.228949 CTCTAGAAAGACCACTACAGTAAACTA 57.771 37.037 0.00 0.00 0.00 2.24
435 436 9.007901 TCTAGAAAGACCACTACAGTAAACTAC 57.992 37.037 0.00 0.00 0.00 2.73
436 437 7.836479 AGAAAGACCACTACAGTAAACTACT 57.164 36.000 0.00 0.00 40.28 2.57
448 449 5.531122 AGTAAACTACTGAGTGCAGAACA 57.469 39.130 0.00 0.00 45.17 3.18
449 450 5.290386 AGTAAACTACTGAGTGCAGAACAC 58.710 41.667 0.00 0.00 45.17 3.32
457 458 3.305709 GTGCAGAACACTGTAGGCA 57.694 52.632 0.00 0.00 46.41 4.75
458 459 1.151668 GTGCAGAACACTGTAGGCAG 58.848 55.000 0.00 0.00 46.41 4.85
459 460 0.603707 TGCAGAACACTGTAGGCAGC 60.604 55.000 0.00 0.00 46.30 5.25
460 461 0.321122 GCAGAACACTGTAGGCAGCT 60.321 55.000 0.00 0.00 46.30 4.24
461 462 1.066858 GCAGAACACTGTAGGCAGCTA 60.067 52.381 0.00 0.00 46.30 3.32
462 463 2.611518 CAGAACACTGTAGGCAGCTAC 58.388 52.381 0.00 0.00 46.30 3.58
463 464 2.232452 CAGAACACTGTAGGCAGCTACT 59.768 50.000 0.00 0.00 46.30 2.57
464 465 3.444034 CAGAACACTGTAGGCAGCTACTA 59.556 47.826 0.00 0.00 46.30 1.82
465 466 4.098654 CAGAACACTGTAGGCAGCTACTAT 59.901 45.833 0.00 0.00 46.30 2.12
466 467 4.712337 AGAACACTGTAGGCAGCTACTATT 59.288 41.667 0.00 0.00 46.30 1.73
467 468 4.657436 ACACTGTAGGCAGCTACTATTC 57.343 45.455 0.00 0.00 46.30 1.75
468 469 3.385111 ACACTGTAGGCAGCTACTATTCC 59.615 47.826 0.00 0.00 46.30 3.01
469 470 2.966516 ACTGTAGGCAGCTACTATTCCC 59.033 50.000 0.00 0.00 46.30 3.97
470 471 3.235200 CTGTAGGCAGCTACTATTCCCT 58.765 50.000 0.00 0.00 35.77 4.20
471 472 3.231818 TGTAGGCAGCTACTATTCCCTC 58.768 50.000 0.00 0.00 0.00 4.30
472 473 1.723288 AGGCAGCTACTATTCCCTCC 58.277 55.000 0.00 0.00 0.00 4.30
473 474 0.318762 GGCAGCTACTATTCCCTCCG 59.681 60.000 0.00 0.00 0.00 4.63
474 475 1.041437 GCAGCTACTATTCCCTCCGT 58.959 55.000 0.00 0.00 0.00 4.69
475 476 1.413077 GCAGCTACTATTCCCTCCGTT 59.587 52.381 0.00 0.00 0.00 4.44
476 477 2.158943 GCAGCTACTATTCCCTCCGTTT 60.159 50.000 0.00 0.00 0.00 3.60
477 478 3.458189 CAGCTACTATTCCCTCCGTTTG 58.542 50.000 0.00 0.00 0.00 2.93
478 479 3.132289 CAGCTACTATTCCCTCCGTTTGA 59.868 47.826 0.00 0.00 0.00 2.69
479 480 3.773119 AGCTACTATTCCCTCCGTTTGAA 59.227 43.478 0.00 0.00 0.00 2.69
480 481 4.224370 AGCTACTATTCCCTCCGTTTGAAA 59.776 41.667 0.00 0.00 0.00 2.69
481 482 4.939439 GCTACTATTCCCTCCGTTTGAAAA 59.061 41.667 0.00 0.00 0.00 2.29
482 483 5.413523 GCTACTATTCCCTCCGTTTGAAAAA 59.586 40.000 0.00 0.00 0.00 1.94
483 484 5.959618 ACTATTCCCTCCGTTTGAAAAAG 57.040 39.130 0.00 0.00 0.00 2.27
484 485 3.660501 ATTCCCTCCGTTTGAAAAAGC 57.339 42.857 0.00 0.00 0.00 3.51
485 486 2.358322 TCCCTCCGTTTGAAAAAGCT 57.642 45.000 0.00 0.00 0.00 3.74
486 487 2.661718 TCCCTCCGTTTGAAAAAGCTT 58.338 42.857 0.00 0.00 0.00 3.74
487 488 2.360801 TCCCTCCGTTTGAAAAAGCTTG 59.639 45.455 0.00 0.00 0.00 4.01
488 489 2.127251 CCTCCGTTTGAAAAAGCTTGC 58.873 47.619 0.00 0.00 0.00 4.01
489 490 2.127251 CTCCGTTTGAAAAAGCTTGCC 58.873 47.619 0.00 0.00 0.00 4.52
490 491 1.202475 TCCGTTTGAAAAAGCTTGCCC 60.202 47.619 0.00 0.00 0.00 5.36
491 492 1.217001 CGTTTGAAAAAGCTTGCCCC 58.783 50.000 0.00 0.00 0.00 5.80
492 493 1.472376 CGTTTGAAAAAGCTTGCCCCA 60.472 47.619 0.00 0.00 0.00 4.96
493 494 2.637947 GTTTGAAAAAGCTTGCCCCAA 58.362 42.857 0.00 0.00 0.00 4.12
494 495 3.013219 GTTTGAAAAAGCTTGCCCCAAA 58.987 40.909 0.00 6.13 0.00 3.28
495 496 2.323968 TGAAAAAGCTTGCCCCAAAC 57.676 45.000 0.00 0.00 0.00 2.93
496 497 1.836802 TGAAAAAGCTTGCCCCAAACT 59.163 42.857 0.00 0.00 0.00 2.66
497 498 3.034635 TGAAAAAGCTTGCCCCAAACTA 58.965 40.909 0.00 0.00 0.00 2.24
498 499 3.181470 TGAAAAAGCTTGCCCCAAACTAC 60.181 43.478 0.00 0.00 0.00 2.73
499 500 2.381752 AAAGCTTGCCCCAAACTACT 57.618 45.000 0.00 0.00 0.00 2.57
500 501 2.381752 AAGCTTGCCCCAAACTACTT 57.618 45.000 0.00 0.00 0.00 2.24
501 502 1.620822 AGCTTGCCCCAAACTACTTG 58.379 50.000 0.00 0.00 34.52 3.16
502 503 1.133482 AGCTTGCCCCAAACTACTTGT 60.133 47.619 0.00 0.00 32.65 3.16
503 504 1.269723 GCTTGCCCCAAACTACTTGTC 59.730 52.381 0.00 0.00 32.65 3.18
504 505 1.886542 CTTGCCCCAAACTACTTGTCC 59.113 52.381 0.00 0.00 32.65 4.02
505 506 1.145571 TGCCCCAAACTACTTGTCCT 58.854 50.000 0.00 0.00 32.65 3.85
506 507 1.497286 TGCCCCAAACTACTTGTCCTT 59.503 47.619 0.00 0.00 32.65 3.36
507 508 2.091555 TGCCCCAAACTACTTGTCCTTT 60.092 45.455 0.00 0.00 32.65 3.11
508 509 3.138653 TGCCCCAAACTACTTGTCCTTTA 59.861 43.478 0.00 0.00 32.65 1.85
509 510 4.146564 GCCCCAAACTACTTGTCCTTTAA 58.853 43.478 0.00 0.00 32.65 1.52
510 511 4.585581 GCCCCAAACTACTTGTCCTTTAAA 59.414 41.667 0.00 0.00 32.65 1.52
511 512 5.245301 GCCCCAAACTACTTGTCCTTTAAAT 59.755 40.000 0.00 0.00 32.65 1.40
512 513 6.687604 CCCCAAACTACTTGTCCTTTAAATG 58.312 40.000 0.00 0.00 32.65 2.32
513 514 6.295067 CCCCAAACTACTTGTCCTTTAAATGG 60.295 42.308 0.00 0.00 32.65 3.16
514 515 6.492087 CCCAAACTACTTGTCCTTTAAATGGA 59.508 38.462 3.19 3.19 32.65 3.41
515 516 7.178451 CCCAAACTACTTGTCCTTTAAATGGAT 59.822 37.037 8.89 0.00 35.87 3.41
516 517 8.028938 CCAAACTACTTGTCCTTTAAATGGATG 58.971 37.037 8.89 6.36 35.87 3.51
517 518 8.576442 CAAACTACTTGTCCTTTAAATGGATGT 58.424 33.333 8.89 10.13 35.87 3.06
518 519 9.802039 AAACTACTTGTCCTTTAAATGGATGTA 57.198 29.630 8.89 10.52 35.87 2.29
519 520 9.975218 AACTACTTGTCCTTTAAATGGATGTAT 57.025 29.630 8.89 1.70 35.87 2.29
520 521 9.614792 ACTACTTGTCCTTTAAATGGATGTATC 57.385 33.333 8.89 0.00 35.87 2.24
521 522 9.838339 CTACTTGTCCTTTAAATGGATGTATCT 57.162 33.333 8.89 0.00 35.87 1.98
523 524 9.838339 ACTTGTCCTTTAAATGGATGTATCTAG 57.162 33.333 8.89 0.00 35.87 2.43
524 525 8.677148 TTGTCCTTTAAATGGATGTATCTAGC 57.323 34.615 8.89 0.00 35.87 3.42
525 526 7.801104 TGTCCTTTAAATGGATGTATCTAGCA 58.199 34.615 8.89 0.00 35.87 3.49
526 527 8.271458 TGTCCTTTAAATGGATGTATCTAGCAA 58.729 33.333 8.89 0.00 35.87 3.91
527 528 9.120538 GTCCTTTAAATGGATGTATCTAGCAAA 57.879 33.333 8.89 0.00 35.87 3.68
528 529 9.693739 TCCTTTAAATGGATGTATCTAGCAAAA 57.306 29.630 3.19 0.00 0.00 2.44
537 538 9.797642 TGGATGTATCTAGCAAAATACATTCAT 57.202 29.630 14.84 0.00 44.10 2.57
545 546 9.671279 TCTAGCAAAATACATTCATTGAAGAGA 57.329 29.630 5.21 0.00 0.00 3.10
546 547 9.713740 CTAGCAAAATACATTCATTGAAGAGAC 57.286 33.333 5.21 0.00 0.00 3.36
547 548 8.114331 AGCAAAATACATTCATTGAAGAGACA 57.886 30.769 5.21 0.00 0.00 3.41
548 549 8.579006 AGCAAAATACATTCATTGAAGAGACAA 58.421 29.630 5.21 0.00 0.00 3.18
549 550 9.195411 GCAAAATACATTCATTGAAGAGACAAA 57.805 29.630 5.21 0.00 33.44 2.83
556 557 9.305925 ACATTCATTGAAGAGACAAACTTTTTC 57.694 29.630 5.21 0.00 33.44 2.29
557 558 7.969387 TTCATTGAAGAGACAAACTTTTTCG 57.031 32.000 0.00 0.00 33.44 3.46
558 559 6.494842 TCATTGAAGAGACAAACTTTTTCGG 58.505 36.000 0.00 0.00 33.44 4.30
559 560 6.317642 TCATTGAAGAGACAAACTTTTTCGGA 59.682 34.615 0.00 0.00 33.44 4.55
560 561 5.479716 TGAAGAGACAAACTTTTTCGGAC 57.520 39.130 0.00 0.00 0.00 4.79
561 562 4.033587 TGAAGAGACAAACTTTTTCGGACG 59.966 41.667 0.00 0.00 0.00 4.79
562 563 2.870411 AGAGACAAACTTTTTCGGACGG 59.130 45.455 0.00 0.00 0.00 4.79
563 564 2.867975 GAGACAAACTTTTTCGGACGGA 59.132 45.455 0.00 0.00 0.00 4.69
564 565 2.870411 AGACAAACTTTTTCGGACGGAG 59.130 45.455 0.00 0.00 0.00 4.63
565 566 1.944709 ACAAACTTTTTCGGACGGAGG 59.055 47.619 0.00 0.00 0.00 4.30
566 567 2.215196 CAAACTTTTTCGGACGGAGGA 58.785 47.619 0.00 0.00 0.00 3.71
567 568 2.614983 CAAACTTTTTCGGACGGAGGAA 59.385 45.455 0.00 0.00 0.00 3.36
568 569 2.165319 ACTTTTTCGGACGGAGGAAG 57.835 50.000 0.00 6.14 0.00 3.46
569 570 1.415289 ACTTTTTCGGACGGAGGAAGT 59.585 47.619 7.05 7.05 31.03 3.01
570 571 2.629617 ACTTTTTCGGACGGAGGAAGTA 59.370 45.455 9.73 0.00 32.91 2.24
571 572 3.260128 ACTTTTTCGGACGGAGGAAGTAT 59.740 43.478 9.73 0.00 32.91 2.12
572 573 4.463891 ACTTTTTCGGACGGAGGAAGTATA 59.536 41.667 9.73 0.00 32.91 1.47
573 574 5.128335 ACTTTTTCGGACGGAGGAAGTATAT 59.872 40.000 9.73 0.00 32.91 0.86
574 575 4.579454 TTTCGGACGGAGGAAGTATATG 57.421 45.455 0.00 0.00 0.00 1.78
575 576 3.497103 TCGGACGGAGGAAGTATATGA 57.503 47.619 0.00 0.00 0.00 2.15
576 577 4.030314 TCGGACGGAGGAAGTATATGAT 57.970 45.455 0.00 0.00 0.00 2.45
577 578 3.756963 TCGGACGGAGGAAGTATATGATG 59.243 47.826 0.00 0.00 0.00 3.07
578 579 3.673594 CGGACGGAGGAAGTATATGATGC 60.674 52.174 0.00 0.00 0.00 3.91
579 580 3.258372 GGACGGAGGAAGTATATGATGCA 59.742 47.826 0.00 0.00 0.00 3.96
580 581 4.081420 GGACGGAGGAAGTATATGATGCAT 60.081 45.833 0.00 0.00 0.00 3.96
581 582 5.482908 GACGGAGGAAGTATATGATGCATT 58.517 41.667 0.00 0.00 0.00 3.56
582 583 5.240891 ACGGAGGAAGTATATGATGCATTG 58.759 41.667 0.00 0.00 0.00 2.82
583 584 5.221722 ACGGAGGAAGTATATGATGCATTGT 60.222 40.000 0.00 0.00 0.00 2.71
584 585 6.014584 ACGGAGGAAGTATATGATGCATTGTA 60.015 38.462 0.00 0.00 0.00 2.41
585 586 6.533012 CGGAGGAAGTATATGATGCATTGTAG 59.467 42.308 0.00 0.00 0.00 2.74
586 587 7.577616 CGGAGGAAGTATATGATGCATTGTAGA 60.578 40.741 0.00 0.00 0.00 2.59
587 588 7.547370 GGAGGAAGTATATGATGCATTGTAGAC 59.453 40.741 0.00 4.88 0.00 2.59
588 589 7.093354 AGGAAGTATATGATGCATTGTAGACG 58.907 38.462 0.00 0.00 0.00 4.18
589 590 6.183360 GGAAGTATATGATGCATTGTAGACGC 60.183 42.308 0.00 3.26 0.00 5.19
590 591 5.783111 AGTATATGATGCATTGTAGACGCA 58.217 37.500 0.00 0.00 40.50 5.24
596 597 3.469899 TGCATTGTAGACGCATCAAAC 57.530 42.857 0.00 0.00 0.00 2.93
597 598 3.073678 TGCATTGTAGACGCATCAAACT 58.926 40.909 0.00 0.00 0.00 2.66
598 599 3.120234 TGCATTGTAGACGCATCAAACTG 60.120 43.478 0.00 0.00 0.00 3.16
599 600 3.120199 GCATTGTAGACGCATCAAACTGT 60.120 43.478 0.00 0.00 0.00 3.55
600 601 4.613622 GCATTGTAGACGCATCAAACTGTT 60.614 41.667 0.00 0.00 0.00 3.16
601 602 4.725556 TTGTAGACGCATCAAACTGTTC 57.274 40.909 0.00 0.00 0.00 3.18
602 603 3.723260 TGTAGACGCATCAAACTGTTCA 58.277 40.909 0.00 0.00 0.00 3.18
603 604 4.314961 TGTAGACGCATCAAACTGTTCAT 58.685 39.130 0.00 0.00 0.00 2.57
604 605 3.818961 AGACGCATCAAACTGTTCATG 57.181 42.857 0.00 0.99 0.00 3.07
605 606 3.402110 AGACGCATCAAACTGTTCATGA 58.598 40.909 13.74 6.92 0.00 3.07
606 607 3.814842 AGACGCATCAAACTGTTCATGAA 59.185 39.130 3.38 3.38 0.00 2.57
607 608 3.888934 ACGCATCAAACTGTTCATGAAC 58.111 40.909 28.10 28.10 41.50 3.18
608 609 2.904319 CGCATCAAACTGTTCATGAACG 59.096 45.455 28.55 24.44 43.94 3.95
609 610 3.363871 CGCATCAAACTGTTCATGAACGA 60.364 43.478 28.55 20.66 43.94 3.85
610 611 4.536065 GCATCAAACTGTTCATGAACGAA 58.464 39.130 28.55 14.73 43.94 3.85
611 612 4.379793 GCATCAAACTGTTCATGAACGAAC 59.620 41.667 28.55 10.79 43.94 3.95
612 613 4.190304 TCAAACTGTTCATGAACGAACG 57.810 40.909 28.55 19.82 46.77 3.95
613 614 2.663279 AACTGTTCATGAACGAACGC 57.337 45.000 28.55 9.00 46.77 4.84
614 615 1.865865 ACTGTTCATGAACGAACGCT 58.134 45.000 28.55 8.43 46.77 5.07
656 658 2.034066 CGGGTGGTTGCACTGGAT 59.966 61.111 0.00 0.00 0.00 3.41
676 678 4.521146 GATCAACAAGTGTCCCATCAGAT 58.479 43.478 0.00 0.00 0.00 2.90
678 680 3.072915 TCAACAAGTGTCCCATCAGATGT 59.927 43.478 9.64 0.00 0.00 3.06
703 713 4.497473 CTAGCATCACTAGCAGGAGTAC 57.503 50.000 0.00 0.00 41.99 2.73
729 739 0.881118 AACTACCAGCAACGCCATTG 59.119 50.000 0.00 0.00 41.69 2.82
743 753 1.893335 CATTGCATCCGCCCGATCA 60.893 57.895 0.00 0.00 37.32 2.92
761 771 0.606096 CACTCCCCATACACGACACA 59.394 55.000 0.00 0.00 0.00 3.72
770 780 1.190249 TACACGACACAACGTTGACG 58.810 50.000 33.66 30.61 44.76 4.35
796 806 0.743701 GCTGGAGTGTCATGCCTCAG 60.744 60.000 8.49 0.00 0.00 3.35
823 834 1.202940 ACCTTTGCTTTCTCACCCTCC 60.203 52.381 0.00 0.00 0.00 4.30
857 878 4.708726 AAGCATTCCAGTGAACATTAGC 57.291 40.909 0.00 0.00 32.13 3.09
939 961 3.133691 CAGTATCCCACCACATCAATCG 58.866 50.000 0.00 0.00 0.00 3.34
941 963 3.454447 AGTATCCCACCACATCAATCGAA 59.546 43.478 0.00 0.00 0.00 3.71
946 968 2.228582 CCACCACATCAATCGAAAAGCA 59.771 45.455 0.00 0.00 0.00 3.91
948 970 2.884012 ACCACATCAATCGAAAAGCACA 59.116 40.909 0.00 0.00 0.00 4.57
949 971 3.058016 ACCACATCAATCGAAAAGCACAG 60.058 43.478 0.00 0.00 0.00 3.66
966 1021 1.202698 ACAGGTTGAGTTGAGCCAGAC 60.203 52.381 0.00 0.00 0.00 3.51
970 1025 2.952310 GGTTGAGTTGAGCCAGACTTTT 59.048 45.455 0.00 0.00 0.00 2.27
1263 1793 1.043116 TGATGGCCTTCGTCGAGGAT 61.043 55.000 8.88 0.00 39.25 3.24
1412 1945 2.812619 CCTTCCCCATCTCCGCCTC 61.813 68.421 0.00 0.00 0.00 4.70
1446 1991 2.203015 AACAAGCACGACGTGGCT 60.203 55.556 27.86 21.33 43.46 4.75
1464 2009 1.859080 GCTTAATAAGAGACCACGGCG 59.141 52.381 4.80 4.80 0.00 6.46
1476 2021 2.513897 ACGGCGGGCATAAAGAGC 60.514 61.111 13.24 0.00 0.00 4.09
1671 2286 8.345565 GCATGGTTCCTTAAATCATAGTAAGTG 58.654 37.037 0.00 0.00 36.53 3.16
1692 2307 2.494870 GGAGTCATTCATGCAAAAGGCT 59.505 45.455 0.00 0.00 45.15 4.58
1706 2321 2.725203 AAGGCTAACTCCAACGCGCA 62.725 55.000 5.73 0.00 0.00 6.09
1719 2334 0.102481 ACGCGCAGATCTAAACGGAT 59.898 50.000 5.73 0.00 0.00 4.18
1742 2357 7.390718 GGATATAGATTTGGTCCGCTATTTGTT 59.609 37.037 0.00 0.00 0.00 2.83
1835 2492 5.163513 CAACCCATTTAGACTTTCATGCAC 58.836 41.667 0.00 0.00 0.00 4.57
1991 2648 9.944663 TTGTCACAAGTACATTGATAGAAAAAC 57.055 29.630 10.71 0.00 41.83 2.43
2032 2702 6.767423 TGGTTGACAATATGAGTCCACATATG 59.233 38.462 0.00 0.00 40.97 1.78
2150 2840 4.552166 ACTCAACTCAACATTTTCACCG 57.448 40.909 0.00 0.00 0.00 4.94
2217 2907 7.187824 TCCTCTGCAAGTACTGAAAATAGAT 57.812 36.000 0.00 0.00 33.76 1.98
2274 2964 5.638783 ACAAGTAACAAGTAGCGCTAGTAG 58.361 41.667 24.50 15.48 0.00 2.57
2340 3030 7.761038 ATAAAGGACAAATCGGAAAGTTCTT 57.239 32.000 0.00 0.00 31.31 2.52
2348 3038 9.278734 GACAAATCGGAAAGTTCTTTGATAATC 57.721 33.333 2.38 0.00 32.54 1.75
2397 3087 4.738740 GGAATTACCGTCTAGTCACATTCG 59.261 45.833 0.00 0.00 0.00 3.34
2412 3102 5.024768 CACATTCGTGACGGAAATAAACA 57.975 39.130 4.70 0.00 46.80 2.83
2413 3103 5.444983 CACATTCGTGACGGAAATAAACAA 58.555 37.500 4.70 0.00 46.80 2.83
2414 3104 6.083630 CACATTCGTGACGGAAATAAACAAT 58.916 36.000 4.70 0.00 46.80 2.71
2415 3105 6.032355 CACATTCGTGACGGAAATAAACAATG 59.968 38.462 4.70 6.91 46.80 2.82
2416 3106 4.671880 TCGTGACGGAAATAAACAATGG 57.328 40.909 4.70 0.00 0.00 3.16
2417 3107 4.316645 TCGTGACGGAAATAAACAATGGA 58.683 39.130 4.70 0.00 0.00 3.41
2418 3108 4.938832 TCGTGACGGAAATAAACAATGGAT 59.061 37.500 4.70 0.00 0.00 3.41
2419 3109 5.413213 TCGTGACGGAAATAAACAATGGATT 59.587 36.000 4.70 0.00 0.00 3.01
2420 3110 6.594547 TCGTGACGGAAATAAACAATGGATTA 59.405 34.615 4.70 0.00 0.00 1.75
2421 3111 6.685403 CGTGACGGAAATAAACAATGGATTAC 59.315 38.462 0.00 0.00 0.00 1.89
2422 3112 7.531716 GTGACGGAAATAAACAATGGATTACA 58.468 34.615 0.00 0.00 0.00 2.41
2423 3113 8.188139 GTGACGGAAATAAACAATGGATTACAT 58.812 33.333 0.00 0.00 43.07 2.29
2424 3114 8.187480 TGACGGAAATAAACAATGGATTACATG 58.813 33.333 0.00 0.00 40.44 3.21
2425 3115 8.287439 ACGGAAATAAACAATGGATTACATGA 57.713 30.769 0.00 0.00 40.44 3.07
2426 3116 8.912988 ACGGAAATAAACAATGGATTACATGAT 58.087 29.630 0.00 0.00 40.44 2.45
2427 3117 9.398170 CGGAAATAAACAATGGATTACATGATC 57.602 33.333 0.00 0.00 40.44 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 9.283768 TGTTCACACATTTATAGACTGTGATTT 57.716 29.630 14.62 0.00 42.20 2.17
19 20 8.846943 TGTTCACACATTTATAGACTGTGATT 57.153 30.769 14.62 0.00 42.20 2.57
20 21 8.886719 CATGTTCACACATTTATAGACTGTGAT 58.113 33.333 14.62 0.00 41.16 3.06
21 22 7.877612 ACATGTTCACACATTTATAGACTGTGA 59.122 33.333 14.62 8.97 41.16 3.58
22 23 8.032952 ACATGTTCACACATTTATAGACTGTG 57.967 34.615 0.00 8.86 41.16 3.66
23 24 8.621532 AACATGTTCACACATTTATAGACTGT 57.378 30.769 4.92 0.00 41.16 3.55
24 25 9.897744 AAAACATGTTCACACATTTATAGACTG 57.102 29.630 12.39 0.00 41.16 3.51
26 27 9.891828 TGAAAACATGTTCACACATTTATAGAC 57.108 29.630 12.39 0.00 41.16 2.59
81 82 9.810545 CTGTTTTTATTTTGACCCTGTTTTCTA 57.189 29.630 0.00 0.00 0.00 2.10
82 83 7.768582 CCTGTTTTTATTTTGACCCTGTTTTCT 59.231 33.333 0.00 0.00 0.00 2.52
83 84 7.551262 ACCTGTTTTTATTTTGACCCTGTTTTC 59.449 33.333 0.00 0.00 0.00 2.29
84 85 7.335673 CACCTGTTTTTATTTTGACCCTGTTTT 59.664 33.333 0.00 0.00 0.00 2.43
85 86 6.821160 CACCTGTTTTTATTTTGACCCTGTTT 59.179 34.615 0.00 0.00 0.00 2.83
86 87 6.155393 TCACCTGTTTTTATTTTGACCCTGTT 59.845 34.615 0.00 0.00 0.00 3.16
87 88 5.659079 TCACCTGTTTTTATTTTGACCCTGT 59.341 36.000 0.00 0.00 0.00 4.00
88 89 6.155475 TCACCTGTTTTTATTTTGACCCTG 57.845 37.500 0.00 0.00 0.00 4.45
89 90 6.800072 TTCACCTGTTTTTATTTTGACCCT 57.200 33.333 0.00 0.00 0.00 4.34
90 91 7.201661 GGTTTTCACCTGTTTTTATTTTGACCC 60.202 37.037 0.00 0.00 40.44 4.46
91 92 7.464844 CGGTTTTCACCTGTTTTTATTTTGACC 60.465 37.037 0.00 0.00 41.64 4.02
92 93 7.395645 CGGTTTTCACCTGTTTTTATTTTGAC 58.604 34.615 0.00 0.00 41.64 3.18
93 94 6.036191 GCGGTTTTCACCTGTTTTTATTTTGA 59.964 34.615 0.00 0.00 41.64 2.69
94 95 6.183360 TGCGGTTTTCACCTGTTTTTATTTTG 60.183 34.615 0.00 0.00 41.64 2.44
95 96 5.875359 TGCGGTTTTCACCTGTTTTTATTTT 59.125 32.000 0.00 0.00 41.64 1.82
96 97 5.420409 TGCGGTTTTCACCTGTTTTTATTT 58.580 33.333 0.00 0.00 41.64 1.40
97 98 5.012328 TGCGGTTTTCACCTGTTTTTATT 57.988 34.783 0.00 0.00 41.64 1.40
98 99 4.657436 TGCGGTTTTCACCTGTTTTTAT 57.343 36.364 0.00 0.00 41.64 1.40
99 100 4.158025 TCTTGCGGTTTTCACCTGTTTTTA 59.842 37.500 0.00 0.00 41.64 1.52
100 101 3.056465 TCTTGCGGTTTTCACCTGTTTTT 60.056 39.130 0.00 0.00 41.64 1.94
101 102 2.494073 TCTTGCGGTTTTCACCTGTTTT 59.506 40.909 0.00 0.00 41.64 2.43
102 103 2.096248 TCTTGCGGTTTTCACCTGTTT 58.904 42.857 0.00 0.00 41.64 2.83
103 104 1.757682 TCTTGCGGTTTTCACCTGTT 58.242 45.000 0.00 0.00 41.64 3.16
104 105 1.608590 CATCTTGCGGTTTTCACCTGT 59.391 47.619 0.00 0.00 41.64 4.00
105 106 1.068333 CCATCTTGCGGTTTTCACCTG 60.068 52.381 0.00 0.00 41.64 4.00
106 107 1.247567 CCATCTTGCGGTTTTCACCT 58.752 50.000 0.00 0.00 41.64 4.00
107 108 0.958822 ACCATCTTGCGGTTTTCACC 59.041 50.000 0.00 0.00 40.16 4.02
108 109 1.336755 ACACCATCTTGCGGTTTTCAC 59.663 47.619 0.00 0.00 33.25 3.18
109 110 1.336440 CACACCATCTTGCGGTTTTCA 59.664 47.619 0.00 0.00 33.25 2.69
110 111 1.335872 CCACACCATCTTGCGGTTTTC 60.336 52.381 0.00 0.00 33.25 2.29
111 112 0.673437 CCACACCATCTTGCGGTTTT 59.327 50.000 0.00 0.00 33.25 2.43
112 113 1.805428 GCCACACCATCTTGCGGTTT 61.805 55.000 0.00 0.00 33.25 3.27
113 114 2.268076 GCCACACCATCTTGCGGTT 61.268 57.895 0.00 0.00 33.25 4.44
114 115 2.672996 GCCACACCATCTTGCGGT 60.673 61.111 0.00 0.00 37.16 5.68
115 116 2.672651 TGCCACACCATCTTGCGG 60.673 61.111 0.00 0.00 0.00 5.69
116 117 1.236616 TTCTGCCACACCATCTTGCG 61.237 55.000 0.00 0.00 0.00 4.85
117 118 0.242017 GTTCTGCCACACCATCTTGC 59.758 55.000 0.00 0.00 0.00 4.01
118 119 0.518636 CGTTCTGCCACACCATCTTG 59.481 55.000 0.00 0.00 0.00 3.02
119 120 0.108585 ACGTTCTGCCACACCATCTT 59.891 50.000 0.00 0.00 0.00 2.40
120 121 0.320771 GACGTTCTGCCACACCATCT 60.321 55.000 0.00 0.00 0.00 2.90
121 122 0.602638 TGACGTTCTGCCACACCATC 60.603 55.000 0.00 0.00 0.00 3.51
122 123 0.603707 CTGACGTTCTGCCACACCAT 60.604 55.000 0.00 0.00 0.00 3.55
123 124 1.227527 CTGACGTTCTGCCACACCA 60.228 57.895 0.00 0.00 0.00 4.17
124 125 0.531974 TTCTGACGTTCTGCCACACC 60.532 55.000 0.00 0.00 0.00 4.16
125 126 1.512926 ATTCTGACGTTCTGCCACAC 58.487 50.000 0.00 0.00 0.00 3.82
126 127 2.930887 GCTATTCTGACGTTCTGCCACA 60.931 50.000 0.00 0.00 0.00 4.17
127 128 1.661112 GCTATTCTGACGTTCTGCCAC 59.339 52.381 0.00 0.00 0.00 5.01
128 129 1.735700 CGCTATTCTGACGTTCTGCCA 60.736 52.381 0.00 0.00 0.00 4.92
129 130 0.924090 CGCTATTCTGACGTTCTGCC 59.076 55.000 0.00 0.00 0.00 4.85
130 131 0.924090 CCGCTATTCTGACGTTCTGC 59.076 55.000 0.00 0.00 0.00 4.26
131 132 0.924090 GCCGCTATTCTGACGTTCTG 59.076 55.000 0.00 0.00 0.00 3.02
132 133 0.179108 GGCCGCTATTCTGACGTTCT 60.179 55.000 0.00 0.00 0.00 3.01
133 134 0.459585 TGGCCGCTATTCTGACGTTC 60.460 55.000 0.00 0.00 0.00 3.95
134 135 0.739813 GTGGCCGCTATTCTGACGTT 60.740 55.000 9.68 0.00 0.00 3.99
135 136 1.153628 GTGGCCGCTATTCTGACGT 60.154 57.895 9.68 0.00 0.00 4.34
136 137 1.153647 TGTGGCCGCTATTCTGACG 60.154 57.895 18.96 0.00 0.00 4.35
137 138 0.108138 AGTGTGGCCGCTATTCTGAC 60.108 55.000 18.96 5.14 0.00 3.51
138 139 1.409064 CTAGTGTGGCCGCTATTCTGA 59.591 52.381 18.96 0.00 33.38 3.27
139 140 1.137086 ACTAGTGTGGCCGCTATTCTG 59.863 52.381 18.96 5.54 33.38 3.02
140 141 1.409427 GACTAGTGTGGCCGCTATTCT 59.591 52.381 18.96 12.50 33.12 2.40
141 142 1.538419 GGACTAGTGTGGCCGCTATTC 60.538 57.143 18.96 12.93 34.38 1.75
142 143 0.464452 GGACTAGTGTGGCCGCTATT 59.536 55.000 18.96 4.69 33.38 1.73
143 144 1.400530 GGGACTAGTGTGGCCGCTAT 61.401 60.000 18.96 8.47 33.38 2.97
144 145 2.056223 GGGACTAGTGTGGCCGCTA 61.056 63.158 18.96 9.42 32.54 4.26
145 146 3.391382 GGGACTAGTGTGGCCGCT 61.391 66.667 18.96 8.69 35.15 5.52
146 147 4.468689 GGGGACTAGTGTGGCCGC 62.469 72.222 10.11 10.11 0.00 6.53
147 148 3.782443 GGGGGACTAGTGTGGCCG 61.782 72.222 0.00 0.00 0.00 6.13
168 169 0.524862 CTCACATCAGGCACCAAAGC 59.475 55.000 0.00 0.00 0.00 3.51
169 170 1.171308 CCTCACATCAGGCACCAAAG 58.829 55.000 0.00 0.00 0.00 2.77
170 171 3.344703 CCTCACATCAGGCACCAAA 57.655 52.632 0.00 0.00 0.00 3.28
177 178 2.124403 GGGCTGCCTCACATCAGG 60.124 66.667 19.68 0.00 36.50 3.86
178 179 0.747283 GAAGGGCTGCCTCACATCAG 60.747 60.000 19.68 0.00 0.00 2.90
179 180 1.203441 AGAAGGGCTGCCTCACATCA 61.203 55.000 19.68 0.00 0.00 3.07
180 181 0.833287 TAGAAGGGCTGCCTCACATC 59.167 55.000 19.68 9.69 0.00 3.06
181 182 0.543749 GTAGAAGGGCTGCCTCACAT 59.456 55.000 19.68 4.03 0.00 3.21
182 183 0.835971 TGTAGAAGGGCTGCCTCACA 60.836 55.000 19.68 12.46 0.00 3.58
183 184 0.324943 TTGTAGAAGGGCTGCCTCAC 59.675 55.000 19.68 9.75 0.00 3.51
184 185 0.324943 GTTGTAGAAGGGCTGCCTCA 59.675 55.000 19.68 5.97 0.00 3.86
185 186 0.324943 TGTTGTAGAAGGGCTGCCTC 59.675 55.000 19.68 9.33 0.00 4.70
186 187 0.995024 ATGTTGTAGAAGGGCTGCCT 59.005 50.000 19.68 0.00 0.00 4.75
187 188 1.098050 CATGTTGTAGAAGGGCTGCC 58.902 55.000 11.05 11.05 0.00 4.85
188 189 1.098050 CCATGTTGTAGAAGGGCTGC 58.902 55.000 0.00 0.00 0.00 5.25
189 190 2.026822 ACTCCATGTTGTAGAAGGGCTG 60.027 50.000 0.00 0.00 0.00 4.85
190 191 2.026822 CACTCCATGTTGTAGAAGGGCT 60.027 50.000 0.00 0.00 0.00 5.19
191 192 2.027192 TCACTCCATGTTGTAGAAGGGC 60.027 50.000 0.00 0.00 0.00 5.19
192 193 3.981071 TCACTCCATGTTGTAGAAGGG 57.019 47.619 0.00 0.00 0.00 3.95
193 194 4.080919 TGGATCACTCCATGTTGTAGAAGG 60.081 45.833 0.00 0.00 46.95 3.46
194 195 5.089970 TGGATCACTCCATGTTGTAGAAG 57.910 43.478 0.00 0.00 46.95 2.85
206 207 3.149899 CACTGCAGTGGATCACTCC 57.850 57.895 34.65 0.00 43.43 3.85
215 216 2.280389 AGCGACACCACTGCAGTG 60.280 61.111 35.15 35.15 45.23 3.66
216 217 2.280389 CAGCGACACCACTGCAGT 60.280 61.111 15.25 15.25 0.00 4.40
217 218 3.046087 CCAGCGACACCACTGCAG 61.046 66.667 13.48 13.48 32.37 4.41
218 219 3.545574 TCCAGCGACACCACTGCA 61.546 61.111 0.00 0.00 32.37 4.41
219 220 3.044305 GTCCAGCGACACCACTGC 61.044 66.667 0.00 0.00 38.99 4.40
220 221 2.357517 GGTCCAGCGACACCACTG 60.358 66.667 0.00 0.00 41.13 3.66
221 222 2.383245 CTTGGTCCAGCGACACCACT 62.383 60.000 3.43 0.00 42.61 4.00
222 223 1.961277 CTTGGTCCAGCGACACCAC 60.961 63.158 3.43 0.00 42.61 4.16
223 224 2.425592 CTTGGTCCAGCGACACCA 59.574 61.111 0.00 0.00 41.13 4.17
224 225 1.961277 CACTTGGTCCAGCGACACC 60.961 63.158 0.00 0.00 41.13 4.16
225 226 1.961277 CCACTTGGTCCAGCGACAC 60.961 63.158 0.00 0.00 41.13 3.67
226 227 2.425592 CCACTTGGTCCAGCGACA 59.574 61.111 0.00 0.00 41.13 4.35
257 258 0.595053 CATGGGACCGATCTTCGTCG 60.595 60.000 0.00 0.00 38.40 5.12
258 259 0.249489 CCATGGGACCGATCTTCGTC 60.249 60.000 2.85 0.00 38.40 4.20
259 260 1.686325 CCCATGGGACCGATCTTCGT 61.686 60.000 28.27 0.00 36.23 3.85
260 261 1.069765 CCCATGGGACCGATCTTCG 59.930 63.158 28.27 0.00 37.22 3.79
261 262 2.528134 TCCCATGGGACCGATCTTC 58.472 57.895 30.62 0.00 39.76 2.87
262 263 4.829388 TCCCATGGGACCGATCTT 57.171 55.556 30.62 0.00 39.76 2.40
268 269 5.694327 GCTAGTTGCTATCCCATGGGACC 62.694 56.522 36.20 25.10 42.26 4.46
269 270 2.551071 GCTAGTTGCTATCCCATGGGAC 60.551 54.545 36.20 23.15 42.26 4.46
270 271 1.699634 GCTAGTTGCTATCCCATGGGA 59.300 52.381 35.57 35.57 43.05 4.37
271 272 1.421268 TGCTAGTTGCTATCCCATGGG 59.579 52.381 26.30 26.30 43.37 4.00
272 273 2.551721 CCTGCTAGTTGCTATCCCATGG 60.552 54.545 4.14 4.14 43.37 3.66
273 274 2.105477 ACCTGCTAGTTGCTATCCCATG 59.895 50.000 0.00 0.00 43.37 3.66
274 275 2.105477 CACCTGCTAGTTGCTATCCCAT 59.895 50.000 0.00 0.00 43.37 4.00
275 276 1.486310 CACCTGCTAGTTGCTATCCCA 59.514 52.381 0.00 0.00 43.37 4.37
276 277 1.202698 CCACCTGCTAGTTGCTATCCC 60.203 57.143 0.00 0.00 43.37 3.85
277 278 1.762957 TCCACCTGCTAGTTGCTATCC 59.237 52.381 0.00 0.00 43.37 2.59
278 279 2.432510 ACTCCACCTGCTAGTTGCTATC 59.567 50.000 0.00 0.00 43.37 2.08
279 280 2.472029 ACTCCACCTGCTAGTTGCTAT 58.528 47.619 0.00 0.00 43.37 2.97
280 281 1.938585 ACTCCACCTGCTAGTTGCTA 58.061 50.000 0.00 0.00 43.37 3.49
281 282 1.938585 TACTCCACCTGCTAGTTGCT 58.061 50.000 0.00 0.00 43.37 3.91
282 283 2.233922 TCTTACTCCACCTGCTAGTTGC 59.766 50.000 0.00 0.00 43.25 4.17
283 284 3.258372 TGTCTTACTCCACCTGCTAGTTG 59.742 47.826 0.00 0.00 0.00 3.16
284 285 3.507411 TGTCTTACTCCACCTGCTAGTT 58.493 45.455 0.00 0.00 0.00 2.24
285 286 3.170991 TGTCTTACTCCACCTGCTAGT 57.829 47.619 0.00 0.00 0.00 2.57
286 287 3.764434 TCTTGTCTTACTCCACCTGCTAG 59.236 47.826 0.00 0.00 0.00 3.42
287 288 3.764434 CTCTTGTCTTACTCCACCTGCTA 59.236 47.826 0.00 0.00 0.00 3.49
288 289 2.564947 CTCTTGTCTTACTCCACCTGCT 59.435 50.000 0.00 0.00 0.00 4.24
289 290 2.563179 TCTCTTGTCTTACTCCACCTGC 59.437 50.000 0.00 0.00 0.00 4.85
290 291 3.367910 GCTCTCTTGTCTTACTCCACCTG 60.368 52.174 0.00 0.00 0.00 4.00
291 292 2.829120 GCTCTCTTGTCTTACTCCACCT 59.171 50.000 0.00 0.00 0.00 4.00
292 293 2.093921 GGCTCTCTTGTCTTACTCCACC 60.094 54.545 0.00 0.00 0.00 4.61
293 294 2.829120 AGGCTCTCTTGTCTTACTCCAC 59.171 50.000 0.00 0.00 0.00 4.02
294 295 3.176924 AGGCTCTCTTGTCTTACTCCA 57.823 47.619 0.00 0.00 0.00 3.86
295 296 3.855858 CAAGGCTCTCTTGTCTTACTCC 58.144 50.000 0.00 0.00 45.81 3.85
305 306 4.780021 TCTCATCTTAACCAAGGCTCTCTT 59.220 41.667 0.00 0.00 35.79 2.85
306 307 4.357325 TCTCATCTTAACCAAGGCTCTCT 58.643 43.478 0.00 0.00 32.22 3.10
307 308 4.744795 TCTCATCTTAACCAAGGCTCTC 57.255 45.455 0.00 0.00 32.22 3.20
308 309 5.505181 TTTCTCATCTTAACCAAGGCTCT 57.495 39.130 0.00 0.00 32.22 4.09
309 310 6.575162 TTTTTCTCATCTTAACCAAGGCTC 57.425 37.500 0.00 0.00 32.22 4.70
310 311 7.310052 GGAATTTTTCTCATCTTAACCAAGGCT 60.310 37.037 0.00 0.00 32.22 4.58
311 312 6.813649 GGAATTTTTCTCATCTTAACCAAGGC 59.186 38.462 0.00 0.00 32.22 4.35
312 313 7.895759 TGGAATTTTTCTCATCTTAACCAAGG 58.104 34.615 0.00 0.00 32.22 3.61
313 314 9.762933 TTTGGAATTTTTCTCATCTTAACCAAG 57.237 29.630 0.00 0.00 34.75 3.61
315 316 9.927668 GATTTGGAATTTTTCTCATCTTAACCA 57.072 29.630 0.00 0.00 0.00 3.67
316 317 9.927668 TGATTTGGAATTTTTCTCATCTTAACC 57.072 29.630 0.00 0.00 0.00 2.85
320 321 9.662947 GGAATGATTTGGAATTTTTCTCATCTT 57.337 29.630 0.00 0.00 0.00 2.40
321 322 7.977853 CGGAATGATTTGGAATTTTTCTCATCT 59.022 33.333 0.00 0.00 0.00 2.90
322 323 7.254218 GCGGAATGATTTGGAATTTTTCTCATC 60.254 37.037 0.00 0.00 0.00 2.92
323 324 6.536224 GCGGAATGATTTGGAATTTTTCTCAT 59.464 34.615 0.00 0.00 0.00 2.90
324 325 5.868801 GCGGAATGATTTGGAATTTTTCTCA 59.131 36.000 0.00 0.00 0.00 3.27
325 326 6.101997 AGCGGAATGATTTGGAATTTTTCTC 58.898 36.000 0.00 0.00 0.00 2.87
326 327 6.041423 AGCGGAATGATTTGGAATTTTTCT 57.959 33.333 0.00 0.00 0.00 2.52
327 328 6.368516 TGAAGCGGAATGATTTGGAATTTTTC 59.631 34.615 0.00 0.00 0.00 2.29
328 329 6.229733 TGAAGCGGAATGATTTGGAATTTTT 58.770 32.000 0.00 0.00 0.00 1.94
329 330 5.792741 TGAAGCGGAATGATTTGGAATTTT 58.207 33.333 0.00 0.00 0.00 1.82
330 331 5.404466 TGAAGCGGAATGATTTGGAATTT 57.596 34.783 0.00 0.00 0.00 1.82
331 332 5.353938 CATGAAGCGGAATGATTTGGAATT 58.646 37.500 0.00 0.00 0.00 2.17
332 333 4.738541 GCATGAAGCGGAATGATTTGGAAT 60.739 41.667 0.00 0.00 0.00 3.01
333 334 3.429272 GCATGAAGCGGAATGATTTGGAA 60.429 43.478 0.00 0.00 0.00 3.53
334 335 2.099592 GCATGAAGCGGAATGATTTGGA 59.900 45.455 0.00 0.00 0.00 3.53
335 336 2.466846 GCATGAAGCGGAATGATTTGG 58.533 47.619 0.00 0.00 0.00 3.28
347 348 1.090052 GTACGGTGGAGGCATGAAGC 61.090 60.000 0.00 0.00 44.65 3.86
348 349 0.462047 GGTACGGTGGAGGCATGAAG 60.462 60.000 0.00 0.00 0.00 3.02
349 350 1.600107 GGTACGGTGGAGGCATGAA 59.400 57.895 0.00 0.00 0.00 2.57
350 351 2.363975 GGGTACGGTGGAGGCATGA 61.364 63.158 0.00 0.00 0.00 3.07
351 352 2.189521 GGGTACGGTGGAGGCATG 59.810 66.667 0.00 0.00 0.00 4.06
352 353 1.921346 TTGGGTACGGTGGAGGCAT 60.921 57.895 0.00 0.00 0.00 4.40
353 354 2.527123 TTGGGTACGGTGGAGGCA 60.527 61.111 0.00 0.00 0.00 4.75
354 355 2.046604 GTTGGGTACGGTGGAGGC 60.047 66.667 0.00 0.00 0.00 4.70
355 356 2.218454 TGGTTGGGTACGGTGGAGG 61.218 63.158 0.00 0.00 0.00 4.30
356 357 1.004200 GTGGTTGGGTACGGTGGAG 60.004 63.158 0.00 0.00 0.00 3.86
357 358 2.518709 GGTGGTTGGGTACGGTGGA 61.519 63.158 0.00 0.00 0.00 4.02
358 359 1.193462 TAGGTGGTTGGGTACGGTGG 61.193 60.000 0.00 0.00 0.00 4.61
359 360 0.248289 CTAGGTGGTTGGGTACGGTG 59.752 60.000 0.00 0.00 0.00 4.94
360 361 0.178924 ACTAGGTGGTTGGGTACGGT 60.179 55.000 0.00 0.00 0.00 4.83
361 362 1.851304 TACTAGGTGGTTGGGTACGG 58.149 55.000 0.00 0.00 0.00 4.02
362 363 5.127682 ACTTAATACTAGGTGGTTGGGTACG 59.872 44.000 0.00 0.00 0.00 3.67
363 364 6.550938 ACTTAATACTAGGTGGTTGGGTAC 57.449 41.667 0.00 0.00 0.00 3.34
364 365 7.290714 CCATACTTAATACTAGGTGGTTGGGTA 59.709 40.741 0.00 0.00 0.00 3.69
365 366 6.100714 CCATACTTAATACTAGGTGGTTGGGT 59.899 42.308 0.00 0.00 0.00 4.51
366 367 6.328148 TCCATACTTAATACTAGGTGGTTGGG 59.672 42.308 0.00 0.00 0.00 4.12
367 368 7.369551 TCCATACTTAATACTAGGTGGTTGG 57.630 40.000 0.00 0.00 0.00 3.77
368 369 8.095169 GGATCCATACTTAATACTAGGTGGTTG 58.905 40.741 6.95 0.00 0.00 3.77
369 370 7.039223 CGGATCCATACTTAATACTAGGTGGTT 60.039 40.741 13.41 0.00 0.00 3.67
370 371 6.436532 CGGATCCATACTTAATACTAGGTGGT 59.563 42.308 13.41 0.00 0.00 4.16
371 372 6.436532 ACGGATCCATACTTAATACTAGGTGG 59.563 42.308 13.41 0.00 0.00 4.61
372 373 7.176165 TGACGGATCCATACTTAATACTAGGTG 59.824 40.741 13.41 0.00 0.00 4.00
373 374 7.236529 TGACGGATCCATACTTAATACTAGGT 58.763 38.462 13.41 0.00 0.00 3.08
374 375 7.698506 TGACGGATCCATACTTAATACTAGG 57.301 40.000 13.41 0.00 0.00 3.02
375 376 8.123575 CGATGACGGATCCATACTTAATACTAG 58.876 40.741 13.41 0.00 35.72 2.57
376 377 7.982224 CGATGACGGATCCATACTTAATACTA 58.018 38.462 13.41 0.00 35.72 1.82
377 378 6.853720 CGATGACGGATCCATACTTAATACT 58.146 40.000 13.41 0.00 35.72 2.12
394 395 2.014857 TCTAGAGGAACACCGATGACG 58.985 52.381 0.00 0.00 39.43 4.35
395 396 4.158025 TCTTTCTAGAGGAACACCGATGAC 59.842 45.833 0.00 0.00 33.13 3.06
396 397 4.158025 GTCTTTCTAGAGGAACACCGATGA 59.842 45.833 0.00 0.00 33.13 2.92
397 398 4.425520 GTCTTTCTAGAGGAACACCGATG 58.574 47.826 0.00 0.00 33.13 3.84
398 399 3.447944 GGTCTTTCTAGAGGAACACCGAT 59.552 47.826 7.64 0.00 31.39 4.18
399 400 2.824341 GGTCTTTCTAGAGGAACACCGA 59.176 50.000 7.64 0.00 31.39 4.69
400 401 2.561419 TGGTCTTTCTAGAGGAACACCG 59.439 50.000 10.29 0.00 38.81 4.94
401 402 3.579151 AGTGGTCTTTCTAGAGGAACACC 59.421 47.826 27.47 14.77 45.52 4.16
402 403 4.875561 AGTGGTCTTTCTAGAGGAACAC 57.124 45.455 25.54 25.54 44.96 3.32
403 404 5.391256 TGTAGTGGTCTTTCTAGAGGAACA 58.609 41.667 10.29 10.29 33.13 3.18
404 405 5.477637 ACTGTAGTGGTCTTTCTAGAGGAAC 59.522 44.000 6.05 6.05 33.64 3.62
405 406 5.642165 ACTGTAGTGGTCTTTCTAGAGGAA 58.358 41.667 0.00 0.00 33.64 3.36
406 407 5.258216 ACTGTAGTGGTCTTTCTAGAGGA 57.742 43.478 0.00 0.00 33.64 3.71
407 408 7.177041 AGTTTACTGTAGTGGTCTTTCTAGAGG 59.823 40.741 0.00 0.00 33.64 3.69
408 409 8.113173 AGTTTACTGTAGTGGTCTTTCTAGAG 57.887 38.462 0.00 0.00 34.90 2.43
409 410 9.007901 GTAGTTTACTGTAGTGGTCTTTCTAGA 57.992 37.037 0.00 0.00 0.00 2.43
410 411 9.012161 AGTAGTTTACTGTAGTGGTCTTTCTAG 57.988 37.037 0.00 0.00 37.69 2.43
411 412 8.930846 AGTAGTTTACTGTAGTGGTCTTTCTA 57.069 34.615 0.00 0.00 37.69 2.10
412 413 7.836479 AGTAGTTTACTGTAGTGGTCTTTCT 57.164 36.000 0.00 0.00 37.69 2.52
423 424 7.946187 GTGTTCTGCACTCAGTAGTTTACTGTA 60.946 40.741 14.05 3.34 45.51 2.74
424 425 7.175423 GTGTTCTGCACTCAGTAGTTTACTGT 61.175 42.308 14.05 0.00 45.51 3.55
425 426 5.175856 GTGTTCTGCACTCAGTAGTTTACTG 59.824 44.000 9.42 9.42 46.04 2.74
426 427 5.290386 GTGTTCTGCACTCAGTAGTTTACT 58.710 41.667 0.00 0.00 44.41 2.24
427 428 5.577860 GTGTTCTGCACTCAGTAGTTTAC 57.422 43.478 0.00 0.00 44.41 2.01
439 440 2.799085 GCTGCCTACAGTGTTCTGCAC 61.799 57.143 0.00 0.58 46.30 4.57
440 441 0.603707 GCTGCCTACAGTGTTCTGCA 60.604 55.000 0.00 7.46 46.30 4.41
441 442 0.321122 AGCTGCCTACAGTGTTCTGC 60.321 55.000 0.00 7.29 46.30 4.26
442 443 2.232452 AGTAGCTGCCTACAGTGTTCTG 59.768 50.000 0.00 0.00 46.30 3.02
443 444 2.530701 AGTAGCTGCCTACAGTGTTCT 58.469 47.619 0.00 0.00 46.30 3.01
444 445 4.657436 ATAGTAGCTGCCTACAGTGTTC 57.343 45.455 0.00 0.00 46.30 3.18
445 446 4.141914 GGAATAGTAGCTGCCTACAGTGTT 60.142 45.833 0.00 0.00 46.30 3.32
446 447 3.385111 GGAATAGTAGCTGCCTACAGTGT 59.615 47.826 0.00 0.00 46.30 3.55
447 448 3.243907 GGGAATAGTAGCTGCCTACAGTG 60.244 52.174 0.00 0.00 46.30 3.66
448 449 2.966516 GGGAATAGTAGCTGCCTACAGT 59.033 50.000 0.00 0.00 46.30 3.55
449 450 3.235200 AGGGAATAGTAGCTGCCTACAG 58.765 50.000 0.00 0.00 45.15 2.74
450 451 3.231818 GAGGGAATAGTAGCTGCCTACA 58.768 50.000 0.00 0.00 45.15 2.74
451 452 2.563620 GGAGGGAATAGTAGCTGCCTAC 59.436 54.545 0.00 0.00 43.46 3.18
452 453 2.818216 CGGAGGGAATAGTAGCTGCCTA 60.818 54.545 0.00 0.00 32.81 3.93
453 454 1.723288 GGAGGGAATAGTAGCTGCCT 58.277 55.000 0.00 0.00 35.85 4.75
454 455 0.318762 CGGAGGGAATAGTAGCTGCC 59.681 60.000 0.00 0.00 0.00 4.85
455 456 1.041437 ACGGAGGGAATAGTAGCTGC 58.959 55.000 0.00 0.00 0.00 5.25
456 457 3.132289 TCAAACGGAGGGAATAGTAGCTG 59.868 47.826 0.00 0.00 0.00 4.24
457 458 3.371965 TCAAACGGAGGGAATAGTAGCT 58.628 45.455 0.00 0.00 0.00 3.32
458 459 3.814005 TCAAACGGAGGGAATAGTAGC 57.186 47.619 0.00 0.00 0.00 3.58
459 460 6.403309 GCTTTTTCAAACGGAGGGAATAGTAG 60.403 42.308 0.00 0.00 0.00 2.57
460 461 5.413523 GCTTTTTCAAACGGAGGGAATAGTA 59.586 40.000 0.00 0.00 0.00 1.82
461 462 4.217767 GCTTTTTCAAACGGAGGGAATAGT 59.782 41.667 0.00 0.00 0.00 2.12
462 463 4.459337 AGCTTTTTCAAACGGAGGGAATAG 59.541 41.667 0.00 0.00 0.00 1.73
463 464 4.403734 AGCTTTTTCAAACGGAGGGAATA 58.596 39.130 0.00 0.00 0.00 1.75
464 465 3.230976 AGCTTTTTCAAACGGAGGGAAT 58.769 40.909 0.00 0.00 0.00 3.01
465 466 2.661718 AGCTTTTTCAAACGGAGGGAA 58.338 42.857 0.00 0.00 0.00 3.97
466 467 2.358322 AGCTTTTTCAAACGGAGGGA 57.642 45.000 0.00 0.00 0.00 4.20
467 468 2.742774 CAAGCTTTTTCAAACGGAGGG 58.257 47.619 0.00 0.00 0.00 4.30
468 469 2.127251 GCAAGCTTTTTCAAACGGAGG 58.873 47.619 0.00 0.00 0.00 4.30
469 470 2.127251 GGCAAGCTTTTTCAAACGGAG 58.873 47.619 0.00 0.00 0.00 4.63
470 471 1.202475 GGGCAAGCTTTTTCAAACGGA 60.202 47.619 0.00 0.00 0.00 4.69
471 472 1.217001 GGGCAAGCTTTTTCAAACGG 58.783 50.000 0.00 0.00 0.00 4.44
472 473 1.217001 GGGGCAAGCTTTTTCAAACG 58.783 50.000 0.00 0.00 0.00 3.60
473 474 2.323968 TGGGGCAAGCTTTTTCAAAC 57.676 45.000 0.00 0.00 0.00 2.93
474 475 3.013219 GTTTGGGGCAAGCTTTTTCAAA 58.987 40.909 0.00 3.22 0.00 2.69
475 476 2.238395 AGTTTGGGGCAAGCTTTTTCAA 59.762 40.909 0.00 0.00 31.14 2.69
476 477 1.836802 AGTTTGGGGCAAGCTTTTTCA 59.163 42.857 0.00 0.00 31.14 2.69
477 478 2.620251 AGTTTGGGGCAAGCTTTTTC 57.380 45.000 0.00 0.00 31.14 2.29
478 479 3.038280 AGTAGTTTGGGGCAAGCTTTTT 58.962 40.909 0.00 0.00 36.41 1.94
479 480 2.677914 AGTAGTTTGGGGCAAGCTTTT 58.322 42.857 0.00 0.00 36.41 2.27
480 481 2.365293 CAAGTAGTTTGGGGCAAGCTTT 59.635 45.455 0.00 0.00 36.41 3.51
481 482 1.963515 CAAGTAGTTTGGGGCAAGCTT 59.036 47.619 0.00 0.00 36.41 3.74
482 483 1.133482 ACAAGTAGTTTGGGGCAAGCT 60.133 47.619 0.00 0.00 41.25 3.74
483 484 1.269723 GACAAGTAGTTTGGGGCAAGC 59.730 52.381 0.00 0.00 41.25 4.01
484 485 1.886542 GGACAAGTAGTTTGGGGCAAG 59.113 52.381 0.00 0.00 41.25 4.01
485 486 1.497286 AGGACAAGTAGTTTGGGGCAA 59.503 47.619 0.00 0.00 41.25 4.52
486 487 1.145571 AGGACAAGTAGTTTGGGGCA 58.854 50.000 0.00 0.00 41.25 5.36
487 488 2.287977 AAGGACAAGTAGTTTGGGGC 57.712 50.000 0.00 0.00 41.25 5.80
488 489 6.295067 CCATTTAAAGGACAAGTAGTTTGGGG 60.295 42.308 0.46 0.00 41.25 4.96
489 490 6.492087 TCCATTTAAAGGACAAGTAGTTTGGG 59.508 38.462 0.46 0.00 41.25 4.12
490 491 7.519032 TCCATTTAAAGGACAAGTAGTTTGG 57.481 36.000 0.46 0.00 41.25 3.28
491 492 8.576442 ACATCCATTTAAAGGACAAGTAGTTTG 58.424 33.333 0.46 0.55 42.68 2.93
492 493 8.706322 ACATCCATTTAAAGGACAAGTAGTTT 57.294 30.769 0.46 0.00 38.13 2.66
493 494 9.975218 ATACATCCATTTAAAGGACAAGTAGTT 57.025 29.630 0.46 0.00 38.13 2.24
494 495 9.614792 GATACATCCATTTAAAGGACAAGTAGT 57.385 33.333 0.46 1.97 38.13 2.73
495 496 9.838339 AGATACATCCATTTAAAGGACAAGTAG 57.162 33.333 0.46 0.00 38.13 2.57
497 498 9.838339 CTAGATACATCCATTTAAAGGACAAGT 57.162 33.333 0.46 7.24 38.13 3.16
498 499 8.778358 GCTAGATACATCCATTTAAAGGACAAG 58.222 37.037 0.46 2.41 38.13 3.16
499 500 8.271458 TGCTAGATACATCCATTTAAAGGACAA 58.729 33.333 0.46 0.00 38.13 3.18
500 501 7.801104 TGCTAGATACATCCATTTAAAGGACA 58.199 34.615 0.46 0.00 38.13 4.02
501 502 8.677148 TTGCTAGATACATCCATTTAAAGGAC 57.323 34.615 0.46 0.00 38.13 3.85
502 503 9.693739 TTTTGCTAGATACATCCATTTAAAGGA 57.306 29.630 0.46 5.25 39.97 3.36
510 511 9.797642 TGAATGTATTTTGCTAGATACATCCAT 57.202 29.630 19.45 8.70 44.48 3.41
511 512 9.797642 ATGAATGTATTTTGCTAGATACATCCA 57.202 29.630 19.45 15.62 44.48 3.41
519 520 9.671279 TCTCTTCAATGAATGTATTTTGCTAGA 57.329 29.630 0.00 0.00 0.00 2.43
520 521 9.713740 GTCTCTTCAATGAATGTATTTTGCTAG 57.286 33.333 0.00 0.00 0.00 3.42
521 522 9.230122 TGTCTCTTCAATGAATGTATTTTGCTA 57.770 29.630 0.00 0.00 0.00 3.49
522 523 8.114331 TGTCTCTTCAATGAATGTATTTTGCT 57.886 30.769 0.00 0.00 0.00 3.91
523 524 8.746922 TTGTCTCTTCAATGAATGTATTTTGC 57.253 30.769 0.00 0.00 0.00 3.68
530 531 9.305925 GAAAAAGTTTGTCTCTTCAATGAATGT 57.694 29.630 0.00 0.00 0.00 2.71
531 532 8.474577 CGAAAAAGTTTGTCTCTTCAATGAATG 58.525 33.333 4.29 0.00 0.00 2.67
532 533 7.649306 CCGAAAAAGTTTGTCTCTTCAATGAAT 59.351 33.333 4.29 0.00 0.00 2.57
533 534 6.972328 CCGAAAAAGTTTGTCTCTTCAATGAA 59.028 34.615 4.29 0.00 0.00 2.57
534 535 6.317642 TCCGAAAAAGTTTGTCTCTTCAATGA 59.682 34.615 4.29 0.00 0.00 2.57
535 536 6.414987 GTCCGAAAAAGTTTGTCTCTTCAATG 59.585 38.462 4.29 0.00 0.00 2.82
536 537 6.495706 GTCCGAAAAAGTTTGTCTCTTCAAT 58.504 36.000 4.29 0.00 0.00 2.57
537 538 5.446741 CGTCCGAAAAAGTTTGTCTCTTCAA 60.447 40.000 4.29 0.00 0.00 2.69
538 539 4.033587 CGTCCGAAAAAGTTTGTCTCTTCA 59.966 41.667 4.29 0.00 0.00 3.02
539 540 4.515432 CGTCCGAAAAAGTTTGTCTCTTC 58.485 43.478 4.29 0.00 0.00 2.87
540 541 3.311596 CCGTCCGAAAAAGTTTGTCTCTT 59.688 43.478 4.29 0.00 0.00 2.85
541 542 2.870411 CCGTCCGAAAAAGTTTGTCTCT 59.130 45.455 4.29 0.00 0.00 3.10
542 543 2.867975 TCCGTCCGAAAAAGTTTGTCTC 59.132 45.455 4.29 0.00 0.00 3.36
543 544 2.870411 CTCCGTCCGAAAAAGTTTGTCT 59.130 45.455 4.29 0.00 0.00 3.41
544 545 2.032290 CCTCCGTCCGAAAAAGTTTGTC 60.032 50.000 0.00 0.00 0.00 3.18
545 546 1.944709 CCTCCGTCCGAAAAAGTTTGT 59.055 47.619 0.00 0.00 0.00 2.83
546 547 2.215196 TCCTCCGTCCGAAAAAGTTTG 58.785 47.619 0.00 0.00 0.00 2.93
547 548 2.625695 TCCTCCGTCCGAAAAAGTTT 57.374 45.000 0.00 0.00 0.00 2.66
548 549 2.158856 ACTTCCTCCGTCCGAAAAAGTT 60.159 45.455 0.00 0.00 0.00 2.66
549 550 1.415289 ACTTCCTCCGTCCGAAAAAGT 59.585 47.619 0.00 0.00 0.00 2.66
550 551 2.165319 ACTTCCTCCGTCCGAAAAAG 57.835 50.000 0.00 0.00 0.00 2.27
551 552 3.967332 ATACTTCCTCCGTCCGAAAAA 57.033 42.857 0.00 0.00 0.00 1.94
552 553 4.646040 TCATATACTTCCTCCGTCCGAAAA 59.354 41.667 0.00 0.00 0.00 2.29
553 554 4.209538 TCATATACTTCCTCCGTCCGAAA 58.790 43.478 0.00 0.00 0.00 3.46
554 555 3.824133 TCATATACTTCCTCCGTCCGAA 58.176 45.455 0.00 0.00 0.00 4.30
555 556 3.497103 TCATATACTTCCTCCGTCCGA 57.503 47.619 0.00 0.00 0.00 4.55
556 557 3.673594 GCATCATATACTTCCTCCGTCCG 60.674 52.174 0.00 0.00 0.00 4.79
557 558 3.258372 TGCATCATATACTTCCTCCGTCC 59.742 47.826 0.00 0.00 0.00 4.79
558 559 4.521130 TGCATCATATACTTCCTCCGTC 57.479 45.455 0.00 0.00 0.00 4.79
559 560 5.221722 ACAATGCATCATATACTTCCTCCGT 60.222 40.000 0.00 0.00 0.00 4.69
560 561 5.240891 ACAATGCATCATATACTTCCTCCG 58.759 41.667 0.00 0.00 0.00 4.63
561 562 7.547370 GTCTACAATGCATCATATACTTCCTCC 59.453 40.741 0.00 0.00 0.00 4.30
562 563 7.274468 CGTCTACAATGCATCATATACTTCCTC 59.726 40.741 0.00 0.00 0.00 3.71
563 564 7.093354 CGTCTACAATGCATCATATACTTCCT 58.907 38.462 0.00 0.00 0.00 3.36
564 565 6.183360 GCGTCTACAATGCATCATATACTTCC 60.183 42.308 0.00 0.00 39.85 3.46
565 566 6.366061 TGCGTCTACAATGCATCATATACTTC 59.634 38.462 0.00 0.00 45.00 3.01
566 567 6.223120 TGCGTCTACAATGCATCATATACTT 58.777 36.000 0.00 0.00 45.00 2.24
567 568 5.783111 TGCGTCTACAATGCATCATATACT 58.217 37.500 0.00 0.00 45.00 2.12
577 578 3.120199 ACAGTTTGATGCGTCTACAATGC 60.120 43.478 7.58 0.00 40.55 3.56
578 579 4.668576 ACAGTTTGATGCGTCTACAATG 57.331 40.909 7.58 3.33 0.00 2.82
579 580 4.754618 TGAACAGTTTGATGCGTCTACAAT 59.245 37.500 7.58 0.00 0.00 2.71
580 581 4.123506 TGAACAGTTTGATGCGTCTACAA 58.876 39.130 7.58 0.00 0.00 2.41
581 582 3.723260 TGAACAGTTTGATGCGTCTACA 58.277 40.909 7.58 0.00 0.00 2.74
582 583 4.388773 TCATGAACAGTTTGATGCGTCTAC 59.611 41.667 7.58 5.64 0.00 2.59
583 584 4.565022 TCATGAACAGTTTGATGCGTCTA 58.435 39.130 7.58 0.00 0.00 2.59
584 585 3.402110 TCATGAACAGTTTGATGCGTCT 58.598 40.909 7.58 0.00 0.00 4.18
585 586 3.811722 TCATGAACAGTTTGATGCGTC 57.188 42.857 0.00 0.00 0.00 5.19
586 587 3.606846 CGTTCATGAACAGTTTGATGCGT 60.607 43.478 32.06 0.00 41.20 5.24
587 588 2.904319 CGTTCATGAACAGTTTGATGCG 59.096 45.455 32.06 14.62 41.20 4.73
588 589 4.145876 TCGTTCATGAACAGTTTGATGC 57.854 40.909 32.06 7.25 41.20 3.91
589 590 4.608470 CGTTCGTTCATGAACAGTTTGATG 59.392 41.667 32.06 16.72 46.77 3.07
590 591 4.772434 CGTTCGTTCATGAACAGTTTGAT 58.228 39.130 32.06 0.00 46.77 2.57
591 592 3.545228 GCGTTCGTTCATGAACAGTTTGA 60.545 43.478 32.06 20.32 46.77 2.69
592 593 2.713976 GCGTTCGTTCATGAACAGTTTG 59.286 45.455 32.06 20.04 46.77 2.93
593 594 2.612212 AGCGTTCGTTCATGAACAGTTT 59.388 40.909 32.06 13.52 46.77 2.66
594 595 2.032894 CAGCGTTCGTTCATGAACAGTT 60.033 45.455 32.06 17.74 46.77 3.16
595 596 1.526887 CAGCGTTCGTTCATGAACAGT 59.473 47.619 32.06 11.26 46.77 3.55
596 597 1.526887 ACAGCGTTCGTTCATGAACAG 59.473 47.619 32.06 24.73 46.77 3.16
597 598 1.577468 ACAGCGTTCGTTCATGAACA 58.423 45.000 32.06 19.30 46.77 3.18
598 599 2.033236 TCAACAGCGTTCGTTCATGAAC 60.033 45.455 25.68 25.68 43.76 3.18
599 600 2.205911 TCAACAGCGTTCGTTCATGAA 58.794 42.857 3.38 3.38 0.00 2.57
600 601 1.792367 CTCAACAGCGTTCGTTCATGA 59.208 47.619 0.00 0.00 0.00 3.07
601 602 1.136252 CCTCAACAGCGTTCGTTCATG 60.136 52.381 0.00 0.00 0.00 3.07
602 603 1.148310 CCTCAACAGCGTTCGTTCAT 58.852 50.000 0.00 0.00 0.00 2.57
603 604 0.103390 TCCTCAACAGCGTTCGTTCA 59.897 50.000 0.00 0.00 0.00 3.18
604 605 1.214367 TTCCTCAACAGCGTTCGTTC 58.786 50.000 0.00 0.00 0.00 3.95
605 606 1.658994 TTTCCTCAACAGCGTTCGTT 58.341 45.000 0.00 0.00 0.00 3.85
606 607 1.658994 TTTTCCTCAACAGCGTTCGT 58.341 45.000 0.00 0.00 0.00 3.85
607 608 2.721797 CGATTTTCCTCAACAGCGTTCG 60.722 50.000 0.00 0.00 0.00 3.95
608 609 2.839474 CGATTTTCCTCAACAGCGTTC 58.161 47.619 0.00 0.00 0.00 3.95
609 610 1.069227 GCGATTTTCCTCAACAGCGTT 60.069 47.619 0.00 0.00 0.00 4.84
610 611 0.517316 GCGATTTTCCTCAACAGCGT 59.483 50.000 0.00 0.00 0.00 5.07
611 612 0.516877 TGCGATTTTCCTCAACAGCG 59.483 50.000 0.00 0.00 0.00 5.18
612 613 1.266718 TGTGCGATTTTCCTCAACAGC 59.733 47.619 0.00 0.00 0.00 4.40
613 614 3.837213 ATGTGCGATTTTCCTCAACAG 57.163 42.857 0.00 0.00 0.00 3.16
614 615 5.240623 AGTTAATGTGCGATTTTCCTCAACA 59.759 36.000 0.00 0.00 0.00 3.33
703 713 3.181510 GGCGTTGCTGGTAGTTGAATTAG 60.182 47.826 0.00 0.00 0.00 1.73
729 739 2.663188 GAGTGATCGGGCGGATGC 60.663 66.667 12.67 5.34 34.82 3.91
743 753 1.001633 GTTGTGTCGTGTATGGGGAGT 59.998 52.381 0.00 0.00 0.00 3.85
761 771 3.335534 GCGACCTGCGTCAACGTT 61.336 61.111 0.00 0.00 43.41 3.99
770 780 2.433318 GACACTCCAGCGACCTGC 60.433 66.667 0.00 0.00 46.98 4.85
796 806 2.880890 TGAGAAAGCAAAGGTCTGAAGC 59.119 45.455 0.00 0.00 0.00 3.86
857 878 6.019881 TGACGCGAACTATATGAGAAATTGTG 60.020 38.462 15.93 0.00 0.00 3.33
939 961 3.793465 GCTCAACTCAACCTGTGCTTTTC 60.793 47.826 0.00 0.00 0.00 2.29
941 963 1.678101 GCTCAACTCAACCTGTGCTTT 59.322 47.619 0.00 0.00 0.00 3.51
946 968 1.131638 TCTGGCTCAACTCAACCTGT 58.868 50.000 0.00 0.00 0.00 4.00
948 970 1.428869 AGTCTGGCTCAACTCAACCT 58.571 50.000 0.00 0.00 0.00 3.50
949 971 2.262423 AAGTCTGGCTCAACTCAACC 57.738 50.000 0.00 0.00 0.00 3.77
1284 1814 1.846712 GCTCCTTGCTCTTGACCCCT 61.847 60.000 0.00 0.00 38.95 4.79
1380 1913 3.090504 GAAGGTCCTTCCCAGTCCT 57.909 57.895 19.59 0.00 34.71 3.85
1412 1945 0.669625 GTTGTCGTCCTCCTTTCCGG 60.670 60.000 0.00 0.00 0.00 5.14
1446 1991 1.137479 CCCGCCGTGGTCTCTTATTAA 59.863 52.381 0.00 0.00 35.15 1.40
1447 1992 0.748450 CCCGCCGTGGTCTCTTATTA 59.252 55.000 0.00 0.00 35.15 0.98
1485 2030 2.036604 TGTCAAACTCTGTATGTCGGCA 59.963 45.455 0.00 0.00 0.00 5.69
1486 2031 2.412089 GTGTCAAACTCTGTATGTCGGC 59.588 50.000 0.00 0.00 0.00 5.54
1487 2032 3.914312 AGTGTCAAACTCTGTATGTCGG 58.086 45.455 0.00 0.00 31.64 4.79
1488 2033 4.553815 CGTAGTGTCAAACTCTGTATGTCG 59.446 45.833 0.00 0.00 40.56 4.35
1489 2034 5.696822 TCGTAGTGTCAAACTCTGTATGTC 58.303 41.667 0.00 0.00 40.56 3.06
1490 2035 5.700722 TCGTAGTGTCAAACTCTGTATGT 57.299 39.130 0.00 0.00 40.56 2.29
1578 2193 8.548721 CGGCAAAATACCAAAGTAGAGTATTAG 58.451 37.037 0.00 0.00 36.04 1.73
1671 2286 2.494870 AGCCTTTTGCATGAATGACTCC 59.505 45.455 0.00 0.00 44.83 3.85
1692 2307 0.530744 AGATCTGCGCGTTGGAGTTA 59.469 50.000 8.43 0.00 37.31 2.24
1706 2321 8.532819 GGACCAAATCTATATCCGTTTAGATCT 58.467 37.037 0.00 0.00 34.78 2.75
1719 2334 7.276658 TGAACAAATAGCGGACCAAATCTATA 58.723 34.615 0.00 0.00 0.00 1.31
1742 2357 1.060729 TCTCCAACCGTCCCAAATGA 58.939 50.000 0.00 0.00 0.00 2.57
1776 2391 1.565759 TGGCTAGATTTGGGCAGATGT 59.434 47.619 0.00 0.00 35.41 3.06
1991 2648 6.524734 TGTCAACCAATAGATATACCAGCTG 58.475 40.000 6.78 6.78 0.00 4.24
2050 2720 7.113965 GTGATTAAGCAACTCACTTTCAACATG 59.886 37.037 0.00 0.00 37.04 3.21
2052 2722 6.494842 GTGATTAAGCAACTCACTTTCAACA 58.505 36.000 0.00 0.00 37.04 3.33
2100 2790 3.318275 TGCCCATTAACGTTTGCAAAGTA 59.682 39.130 13.26 2.60 0.00 2.24
2217 2907 7.933215 TCTTGCTACTACACTATCTGTTACA 57.067 36.000 0.00 0.00 33.91 2.41
2285 2975 3.945921 GGATTGGGTCACCTTAAGCTTAC 59.054 47.826 5.45 0.00 37.76 2.34
2286 2976 3.850173 AGGATTGGGTCACCTTAAGCTTA 59.150 43.478 0.86 0.86 37.76 3.09
2287 2977 2.649816 AGGATTGGGTCACCTTAAGCTT 59.350 45.455 3.48 3.48 37.76 3.74
2288 2978 2.279173 AGGATTGGGTCACCTTAAGCT 58.721 47.619 0.00 0.00 37.76 3.74
2289 2979 2.808906 AGGATTGGGTCACCTTAAGC 57.191 50.000 0.00 0.00 37.76 3.09
2290 2980 5.304357 ACAAAAAGGATTGGGTCACCTTAAG 59.696 40.000 0.00 0.00 42.25 1.85
2348 3038 6.169419 TGTGTCTTCGAGAATATTTTGCTG 57.831 37.500 0.00 0.00 0.00 4.41
2397 3087 7.531716 TGTAATCCATTGTTTATTTCCGTCAC 58.468 34.615 0.00 0.00 0.00 3.67
2401 3091 9.398170 GATCATGTAATCCATTGTTTATTTCCG 57.602 33.333 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.