Multiple sequence alignment - TraesCS3B01G553900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G553900 chr3B 100.000 2459 0 0 1 2459 788074560 788072102 0.000000e+00 4542
1 TraesCS3B01G553900 chr3B 98.857 1050 8 2 1410 2459 788067729 788066684 0.000000e+00 1869
2 TraesCS3B01G553900 chr3B 86.761 778 88 7 989 1759 787472544 787473313 0.000000e+00 852
3 TraesCS3B01G553900 chr3B 97.118 451 12 1 1 451 171120527 171120078 0.000000e+00 760
4 TraesCS3B01G553900 chr3B 96.320 462 14 3 1 462 247809422 247808964 0.000000e+00 756
5 TraesCS3B01G553900 chr3B 83.590 780 97 22 989 1759 788058599 788057842 0.000000e+00 702
6 TraesCS3B01G553900 chr3B 85.580 638 71 13 989 1616 787995500 787996126 0.000000e+00 649
7 TraesCS3B01G553900 chr3B 91.557 379 26 5 2086 2459 788085648 788085271 3.620000e-143 518
8 TraesCS3B01G553900 chr3B 82.922 486 65 12 1277 1757 788055432 788054960 2.920000e-114 422
9 TraesCS3B01G553900 chr3B 88.172 93 11 0 839 931 788058709 788058617 7.190000e-21 111
10 TraesCS3B01G553900 chr3D 87.295 1220 103 27 545 1756 589573293 589572118 0.000000e+00 1347
11 TraesCS3B01G553900 chr3D 83.108 1255 147 31 520 1760 589418176 589416973 0.000000e+00 1083
12 TraesCS3B01G553900 chr3D 86.783 575 67 4 989 1554 589426578 589426004 1.240000e-177 632
13 TraesCS3B01G553900 chr3D 88.802 509 52 1 989 1492 589432797 589432289 9.660000e-174 619
14 TraesCS3B01G553900 chr3D 87.500 416 39 6 520 931 589506421 589506015 3.700000e-128 468
15 TraesCS3B01G553900 chr3D 86.111 252 28 3 683 931 589426843 589426596 5.210000e-67 265
16 TraesCS3B01G553900 chr3D 79.419 413 48 17 520 931 589493574 589493198 8.720000e-65 257
17 TraesCS3B01G553900 chr3D 83.544 237 36 2 1530 1766 589432284 589432051 4.120000e-53 219
18 TraesCS3B01G553900 chr3D 82.258 186 32 1 2273 2458 571687145 571686961 2.530000e-35 159
19 TraesCS3B01G553900 chr3D 82.609 161 25 3 2259 2418 609820669 609820511 3.300000e-29 139
20 TraesCS3B01G553900 chr3A 84.952 1256 120 27 520 1758 719361232 719360029 0.000000e+00 1208
21 TraesCS3B01G553900 chr3A 82.335 1002 122 38 763 1760 719337537 719336587 0.000000e+00 819
22 TraesCS3B01G553900 chr3A 85.419 775 77 19 989 1756 719354081 719353336 0.000000e+00 773
23 TraesCS3B01G553900 chr3A 83.134 753 100 20 796 1542 719350260 719349529 0.000000e+00 662
24 TraesCS3B01G553900 chr3A 83.654 416 34 15 520 931 719354484 719354099 6.460000e-96 361
25 TraesCS3B01G553900 chr2B 97.339 451 11 1 1 451 39844337 39844786 0.000000e+00 765
26 TraesCS3B01G553900 chr2B 96.923 455 13 1 1 455 675208638 675208185 0.000000e+00 761
27 TraesCS3B01G553900 chr4A 97.118 451 11 1 1 451 729257924 729258372 0.000000e+00 760
28 TraesCS3B01G553900 chr5B 96.328 463 14 2 1 463 230783045 230783504 0.000000e+00 758
29 TraesCS3B01G553900 chr1B 96.112 463 14 4 1 463 211606826 211606368 0.000000e+00 752
30 TraesCS3B01G553900 chr1B 96.689 453 13 2 1 452 660787429 660787880 0.000000e+00 752
31 TraesCS3B01G553900 chr7B 95.896 463 17 2 1 462 145042590 145042129 0.000000e+00 749


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G553900 chr3B 788072102 788074560 2458 True 4542.000000 4542 100.000000 1 2459 1 chr3B.!!$R4 2458
1 TraesCS3B01G553900 chr3B 788066684 788067729 1045 True 1869.000000 1869 98.857000 1410 2459 1 chr3B.!!$R3 1049
2 TraesCS3B01G553900 chr3B 787472544 787473313 769 False 852.000000 852 86.761000 989 1759 1 chr3B.!!$F1 770
3 TraesCS3B01G553900 chr3B 787995500 787996126 626 False 649.000000 649 85.580000 989 1616 1 chr3B.!!$F2 627
4 TraesCS3B01G553900 chr3B 788054960 788058709 3749 True 411.666667 702 84.894667 839 1759 3 chr3B.!!$R6 920
5 TraesCS3B01G553900 chr3D 589572118 589573293 1175 True 1347.000000 1347 87.295000 545 1756 1 chr3D.!!$R5 1211
6 TraesCS3B01G553900 chr3D 589416973 589418176 1203 True 1083.000000 1083 83.108000 520 1760 1 chr3D.!!$R2 1240
7 TraesCS3B01G553900 chr3D 589426004 589426843 839 True 448.500000 632 86.447000 683 1554 2 chr3D.!!$R7 871
8 TraesCS3B01G553900 chr3D 589432051 589432797 746 True 419.000000 619 86.173000 989 1766 2 chr3D.!!$R8 777
9 TraesCS3B01G553900 chr3A 719360029 719361232 1203 True 1208.000000 1208 84.952000 520 1758 1 chr3A.!!$R2 1238
10 TraesCS3B01G553900 chr3A 719336587 719337537 950 True 819.000000 819 82.335000 763 1760 1 chr3A.!!$R1 997
11 TraesCS3B01G553900 chr3A 719349529 719354484 4955 True 598.666667 773 84.069000 520 1756 3 chr3A.!!$R3 1236

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
491 492 0.036388 TCCGTTTCCCAGCTAAGCAG 60.036 55.0 0.0 0.0 0.0 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2045 5806 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.0 0.0 0.0 0.0 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.822685 TTTTTGTATGAGCCATGGCAAT 57.177 36.364 37.18 29.58 44.88 3.56
22 23 4.822685 TTTTGTATGAGCCATGGCAATT 57.177 36.364 37.18 22.56 44.88 2.32
23 24 4.822685 TTTGTATGAGCCATGGCAATTT 57.177 36.364 37.18 18.19 44.88 1.82
24 25 4.822685 TTGTATGAGCCATGGCAATTTT 57.177 36.364 37.18 17.76 44.88 1.82
25 26 5.929058 TTGTATGAGCCATGGCAATTTTA 57.071 34.783 37.18 18.11 44.88 1.52
26 27 5.261209 TGTATGAGCCATGGCAATTTTAC 57.739 39.130 37.18 26.67 44.88 2.01
27 28 2.937469 TGAGCCATGGCAATTTTACG 57.063 45.000 37.18 0.00 44.88 3.18
28 29 2.166829 TGAGCCATGGCAATTTTACGT 58.833 42.857 37.18 14.50 44.88 3.57
29 30 2.094803 TGAGCCATGGCAATTTTACGTG 60.095 45.455 37.18 0.00 44.88 4.49
30 31 0.998669 GCCATGGCAATTTTACGTGC 59.001 50.000 32.08 0.00 41.49 5.34
31 32 1.671261 GCCATGGCAATTTTACGTGCA 60.671 47.619 32.08 0.00 42.74 4.57
32 33 2.891112 CCATGGCAATTTTACGTGCAT 58.109 42.857 0.00 0.00 42.74 3.96
33 34 2.604011 CCATGGCAATTTTACGTGCATG 59.396 45.455 3.82 3.82 42.74 4.06
34 35 1.707632 TGGCAATTTTACGTGCATGC 58.292 45.000 11.82 11.82 42.74 4.06
35 36 1.000171 TGGCAATTTTACGTGCATGCA 60.000 42.857 18.46 18.46 42.74 3.96
36 37 2.270047 GGCAATTTTACGTGCATGCAT 58.730 42.857 25.64 11.73 42.74 3.96
37 38 2.282290 GGCAATTTTACGTGCATGCATC 59.718 45.455 25.64 16.09 42.74 3.91
38 39 2.922387 GCAATTTTACGTGCATGCATCA 59.078 40.909 25.64 9.24 40.58 3.07
39 40 3.552699 GCAATTTTACGTGCATGCATCAT 59.447 39.130 25.64 14.63 40.58 2.45
40 41 4.549298 GCAATTTTACGTGCATGCATCATG 60.549 41.667 25.64 16.15 43.91 3.07
41 42 2.847959 TTTACGTGCATGCATCATGG 57.152 45.000 25.64 13.12 41.64 3.66
42 43 0.381445 TTACGTGCATGCATCATGGC 59.619 50.000 25.64 8.75 41.64 4.40
56 57 7.773864 TGCATCATGGCAATTTTAGTTTATG 57.226 32.000 0.00 0.00 41.65 1.90
57 58 6.762187 TGCATCATGGCAATTTTAGTTTATGG 59.238 34.615 0.00 0.00 41.65 2.74
58 59 6.762661 GCATCATGGCAATTTTAGTTTATGGT 59.237 34.615 0.00 0.00 0.00 3.55
59 60 7.280652 GCATCATGGCAATTTTAGTTTATGGTT 59.719 33.333 0.00 0.00 0.00 3.67
60 61 8.819974 CATCATGGCAATTTTAGTTTATGGTTC 58.180 33.333 0.00 0.00 0.00 3.62
61 62 7.901029 TCATGGCAATTTTAGTTTATGGTTCA 58.099 30.769 0.00 0.00 0.00 3.18
62 63 8.538701 TCATGGCAATTTTAGTTTATGGTTCAT 58.461 29.630 0.00 0.00 0.00 2.57
63 64 8.605746 CATGGCAATTTTAGTTTATGGTTCATG 58.394 33.333 0.00 0.00 0.00 3.07
64 65 7.102346 TGGCAATTTTAGTTTATGGTTCATGG 58.898 34.615 0.00 0.00 0.00 3.66
65 66 6.037062 GGCAATTTTAGTTTATGGTTCATGGC 59.963 38.462 0.00 0.00 0.00 4.40
66 67 6.593382 GCAATTTTAGTTTATGGTTCATGGCA 59.407 34.615 0.00 0.00 0.00 4.92
67 68 7.118971 GCAATTTTAGTTTATGGTTCATGGCAA 59.881 33.333 0.00 0.00 0.00 4.52
68 69 8.658609 CAATTTTAGTTTATGGTTCATGGCAAG 58.341 33.333 0.00 0.00 0.00 4.01
69 70 6.909550 TTTAGTTTATGGTTCATGGCAAGT 57.090 33.333 0.00 0.00 0.00 3.16
70 71 6.509418 TTAGTTTATGGTTCATGGCAAGTC 57.491 37.500 0.00 0.00 0.00 3.01
71 72 4.666512 AGTTTATGGTTCATGGCAAGTCT 58.333 39.130 0.00 0.00 0.00 3.24
72 73 5.815581 AGTTTATGGTTCATGGCAAGTCTA 58.184 37.500 0.00 0.00 0.00 2.59
73 74 5.882557 AGTTTATGGTTCATGGCAAGTCTAG 59.117 40.000 0.00 0.00 0.00 2.43
74 75 5.435686 TTATGGTTCATGGCAAGTCTAGT 57.564 39.130 0.00 0.00 0.00 2.57
75 76 3.788227 TGGTTCATGGCAAGTCTAGTT 57.212 42.857 0.00 0.00 0.00 2.24
76 77 4.098914 TGGTTCATGGCAAGTCTAGTTT 57.901 40.909 0.00 0.00 0.00 2.66
77 78 4.072131 TGGTTCATGGCAAGTCTAGTTTC 58.928 43.478 0.00 0.00 0.00 2.78
78 79 4.202461 TGGTTCATGGCAAGTCTAGTTTCT 60.202 41.667 0.00 0.00 0.00 2.52
79 80 4.762251 GGTTCATGGCAAGTCTAGTTTCTT 59.238 41.667 0.00 0.00 0.00 2.52
80 81 5.938125 GGTTCATGGCAAGTCTAGTTTCTTA 59.062 40.000 0.00 0.00 0.00 2.10
81 82 6.430000 GGTTCATGGCAAGTCTAGTTTCTTAA 59.570 38.462 0.00 0.00 0.00 1.85
82 83 7.121315 GGTTCATGGCAAGTCTAGTTTCTTAAT 59.879 37.037 0.00 0.00 0.00 1.40
83 84 8.515414 GTTCATGGCAAGTCTAGTTTCTTAATT 58.485 33.333 0.00 0.00 0.00 1.40
84 85 8.268850 TCATGGCAAGTCTAGTTTCTTAATTC 57.731 34.615 0.00 0.00 0.00 2.17
85 86 7.336931 TCATGGCAAGTCTAGTTTCTTAATTCC 59.663 37.037 0.00 0.00 0.00 3.01
86 87 5.944007 TGGCAAGTCTAGTTTCTTAATTCCC 59.056 40.000 0.00 0.00 0.00 3.97
87 88 5.357314 GGCAAGTCTAGTTTCTTAATTCCCC 59.643 44.000 0.00 0.00 0.00 4.81
88 89 5.064834 GCAAGTCTAGTTTCTTAATTCCCCG 59.935 44.000 0.00 0.00 0.00 5.73
89 90 6.171213 CAAGTCTAGTTTCTTAATTCCCCGT 58.829 40.000 0.00 0.00 0.00 5.28
90 91 6.370186 AGTCTAGTTTCTTAATTCCCCGTT 57.630 37.500 0.00 0.00 0.00 4.44
91 92 6.776744 AGTCTAGTTTCTTAATTCCCCGTTT 58.223 36.000 0.00 0.00 0.00 3.60
92 93 7.229308 AGTCTAGTTTCTTAATTCCCCGTTTT 58.771 34.615 0.00 0.00 0.00 2.43
93 94 8.377799 AGTCTAGTTTCTTAATTCCCCGTTTTA 58.622 33.333 0.00 0.00 0.00 1.52
94 95 9.170734 GTCTAGTTTCTTAATTCCCCGTTTTAT 57.829 33.333 0.00 0.00 0.00 1.40
102 103 9.463902 TCTTAATTCCCCGTTTTATAAATGTCA 57.536 29.630 0.00 0.00 0.00 3.58
106 107 9.952030 AATTCCCCGTTTTATAAATGTCAAAAT 57.048 25.926 0.00 0.00 0.00 1.82
107 108 9.952030 ATTCCCCGTTTTATAAATGTCAAAATT 57.048 25.926 0.00 0.00 0.00 1.82
108 109 9.780186 TTCCCCGTTTTATAAATGTCAAAATTT 57.220 25.926 0.00 0.00 34.24 1.82
150 151 6.964807 AAATAGCTGAAACATATCATGGCA 57.035 33.333 0.00 0.00 33.60 4.92
151 152 6.964807 AATAGCTGAAACATATCATGGCAA 57.035 33.333 0.00 0.00 33.60 4.52
152 153 4.644103 AGCTGAAACATATCATGGCAAC 57.356 40.909 0.00 0.00 33.60 4.17
153 154 4.275810 AGCTGAAACATATCATGGCAACT 58.724 39.130 0.00 0.00 37.61 3.16
154 155 4.708421 AGCTGAAACATATCATGGCAACTT 59.292 37.500 0.00 0.00 37.61 2.66
155 156 4.802039 GCTGAAACATATCATGGCAACTTG 59.198 41.667 0.00 0.00 42.84 3.16
164 165 4.829064 TCATGGCAACTTGAGTGTAAAC 57.171 40.909 0.00 0.00 44.96 2.01
165 166 4.203226 TCATGGCAACTTGAGTGTAAACA 58.797 39.130 0.00 0.00 44.96 2.83
166 167 4.826733 TCATGGCAACTTGAGTGTAAACAT 59.173 37.500 0.00 0.00 44.96 2.71
167 168 4.829064 TGGCAACTTGAGTGTAAACATC 57.171 40.909 0.00 0.00 37.61 3.06
168 169 4.203226 TGGCAACTTGAGTGTAAACATCA 58.797 39.130 0.00 0.00 37.61 3.07
169 170 4.826733 TGGCAACTTGAGTGTAAACATCAT 59.173 37.500 0.00 0.00 37.61 2.45
170 171 5.156355 GGCAACTTGAGTGTAAACATCATG 58.844 41.667 0.00 0.00 0.00 3.07
171 172 5.156355 GCAACTTGAGTGTAAACATCATGG 58.844 41.667 0.00 0.00 0.00 3.66
172 173 5.156355 CAACTTGAGTGTAAACATCATGGC 58.844 41.667 0.00 0.00 0.00 4.40
173 174 4.397420 ACTTGAGTGTAAACATCATGGCA 58.603 39.130 0.00 0.00 0.00 4.92
174 175 4.826733 ACTTGAGTGTAAACATCATGGCAA 59.173 37.500 0.00 0.00 0.00 4.52
175 176 5.477984 ACTTGAGTGTAAACATCATGGCAAT 59.522 36.000 0.00 0.00 0.00 3.56
176 177 5.981088 TGAGTGTAAACATCATGGCAATT 57.019 34.783 0.00 0.00 0.00 2.32
177 178 5.953183 TGAGTGTAAACATCATGGCAATTC 58.047 37.500 0.00 0.00 0.00 2.17
178 179 5.476254 TGAGTGTAAACATCATGGCAATTCA 59.524 36.000 0.00 0.00 0.00 2.57
179 180 6.153170 TGAGTGTAAACATCATGGCAATTCAT 59.847 34.615 0.00 0.00 0.00 2.57
180 181 7.338957 TGAGTGTAAACATCATGGCAATTCATA 59.661 33.333 0.00 0.00 0.00 2.15
181 182 8.241497 AGTGTAAACATCATGGCAATTCATAT 57.759 30.769 0.00 0.00 0.00 1.78
182 183 8.139350 AGTGTAAACATCATGGCAATTCATATG 58.861 33.333 0.00 0.00 0.00 1.78
183 184 6.924612 TGTAAACATCATGGCAATTCATATGC 59.075 34.615 0.00 0.00 43.08 3.14
184 185 5.538849 AACATCATGGCAATTCATATGCA 57.461 34.783 0.00 0.00 45.60 3.96
185 186 5.538849 ACATCATGGCAATTCATATGCAA 57.461 34.783 0.00 0.00 45.60 4.08
186 187 6.109156 ACATCATGGCAATTCATATGCAAT 57.891 33.333 0.00 0.00 45.60 3.56
187 188 7.234661 ACATCATGGCAATTCATATGCAATA 57.765 32.000 0.00 0.00 45.60 1.90
188 189 7.320399 ACATCATGGCAATTCATATGCAATAG 58.680 34.615 0.00 0.00 45.60 1.73
189 190 7.177744 ACATCATGGCAATTCATATGCAATAGA 59.822 33.333 0.00 0.00 45.60 1.98
190 191 6.916440 TCATGGCAATTCATATGCAATAGAC 58.084 36.000 0.00 0.00 45.60 2.59
191 192 6.490721 TCATGGCAATTCATATGCAATAGACA 59.509 34.615 0.00 0.00 45.60 3.41
192 193 6.904463 TGGCAATTCATATGCAATAGACAT 57.096 33.333 0.00 0.00 45.60 3.06
193 194 6.683715 TGGCAATTCATATGCAATAGACATG 58.316 36.000 0.00 0.00 45.60 3.21
194 195 6.097356 GGCAATTCATATGCAATAGACATGG 58.903 40.000 0.00 0.00 45.60 3.66
195 196 5.575606 GCAATTCATATGCAATAGACATGGC 59.424 40.000 0.00 0.00 43.29 4.40
196 197 6.683715 CAATTCATATGCAATAGACATGGCA 58.316 36.000 0.00 0.00 45.29 4.92
197 198 6.904463 ATTCATATGCAATAGACATGGCAA 57.096 33.333 0.00 0.00 44.38 4.52
198 199 5.694231 TCATATGCAATAGACATGGCAAC 57.306 39.130 0.00 0.00 44.38 4.17
199 200 5.379187 TCATATGCAATAGACATGGCAACT 58.621 37.500 0.00 0.00 44.38 3.16
200 201 5.829391 TCATATGCAATAGACATGGCAACTT 59.171 36.000 0.00 0.00 44.38 2.66
201 202 6.321945 TCATATGCAATAGACATGGCAACTTT 59.678 34.615 0.00 0.00 44.38 2.66
202 203 4.870123 TGCAATAGACATGGCAACTTTT 57.130 36.364 0.00 0.00 38.19 2.27
203 204 5.973899 TGCAATAGACATGGCAACTTTTA 57.026 34.783 0.00 0.00 38.19 1.52
204 205 6.338214 TGCAATAGACATGGCAACTTTTAA 57.662 33.333 0.00 0.00 38.19 1.52
205 206 6.934056 TGCAATAGACATGGCAACTTTTAAT 58.066 32.000 0.00 0.00 38.19 1.40
206 207 7.035004 TGCAATAGACATGGCAACTTTTAATC 58.965 34.615 0.00 0.00 38.19 1.75
207 208 6.476706 GCAATAGACATGGCAACTTTTAATCC 59.523 38.462 0.00 0.00 30.66 3.01
208 209 7.546358 CAATAGACATGGCAACTTTTAATCCA 58.454 34.615 0.00 0.00 37.61 3.41
209 210 7.716799 ATAGACATGGCAACTTTTAATCCAA 57.283 32.000 0.00 0.00 37.61 3.53
210 211 6.418057 AGACATGGCAACTTTTAATCCAAA 57.582 33.333 0.00 0.00 37.61 3.28
211 212 6.825610 AGACATGGCAACTTTTAATCCAAAA 58.174 32.000 0.00 0.00 34.89 2.44
212 213 7.278875 AGACATGGCAACTTTTAATCCAAAAA 58.721 30.769 0.00 0.00 35.71 1.94
241 242 8.951787 AATTCATCAAAACATATCAACATGGG 57.048 30.769 0.00 0.00 0.00 4.00
242 243 7.715266 TTCATCAAAACATATCAACATGGGA 57.285 32.000 0.00 0.00 0.00 4.37
243 244 7.901283 TCATCAAAACATATCAACATGGGAT 57.099 32.000 0.00 2.37 0.00 3.85
244 245 7.944061 TCATCAAAACATATCAACATGGGATC 58.056 34.615 5.52 0.00 0.00 3.36
245 246 7.781219 TCATCAAAACATATCAACATGGGATCT 59.219 33.333 5.52 0.00 0.00 2.75
246 247 9.070179 CATCAAAACATATCAACATGGGATCTA 57.930 33.333 5.52 0.00 0.00 1.98
247 248 8.681486 TCAAAACATATCAACATGGGATCTAG 57.319 34.615 5.52 0.00 0.00 2.43
248 249 8.274322 TCAAAACATATCAACATGGGATCTAGT 58.726 33.333 5.52 1.99 0.00 2.57
249 250 8.906867 CAAAACATATCAACATGGGATCTAGTT 58.093 33.333 5.52 6.83 0.00 2.24
250 251 9.479549 AAAACATATCAACATGGGATCTAGTTT 57.520 29.630 5.52 11.05 30.93 2.66
251 252 9.479549 AAACATATCAACATGGGATCTAGTTTT 57.520 29.630 5.52 0.00 0.00 2.43
252 253 8.455903 ACATATCAACATGGGATCTAGTTTTG 57.544 34.615 5.52 0.00 0.00 2.44
253 254 8.274322 ACATATCAACATGGGATCTAGTTTTGA 58.726 33.333 5.52 0.00 0.00 2.69
254 255 9.123902 CATATCAACATGGGATCTAGTTTTGAA 57.876 33.333 5.52 0.00 0.00 2.69
255 256 7.636150 ATCAACATGGGATCTAGTTTTGAAG 57.364 36.000 0.00 0.00 0.00 3.02
256 257 6.778821 TCAACATGGGATCTAGTTTTGAAGA 58.221 36.000 0.00 0.00 0.00 2.87
257 258 7.405292 TCAACATGGGATCTAGTTTTGAAGAT 58.595 34.615 0.00 0.00 0.00 2.40
258 259 7.554118 TCAACATGGGATCTAGTTTTGAAGATC 59.446 37.037 0.00 4.15 37.15 2.75
259 260 7.205515 ACATGGGATCTAGTTTTGAAGATCT 57.794 36.000 11.05 0.00 37.77 2.75
260 261 7.278875 ACATGGGATCTAGTTTTGAAGATCTC 58.721 38.462 11.05 8.38 38.41 2.75
261 262 6.874278 TGGGATCTAGTTTTGAAGATCTCA 57.126 37.500 10.15 10.15 43.51 3.27
262 263 7.443302 TGGGATCTAGTTTTGAAGATCTCAT 57.557 36.000 10.15 0.00 41.63 2.90
263 264 7.504403 TGGGATCTAGTTTTGAAGATCTCATC 58.496 38.462 10.15 0.00 41.63 2.92
264 265 6.644592 GGGATCTAGTTTTGAAGATCTCATCG 59.355 42.308 11.05 0.00 37.98 3.84
265 266 6.145371 GGATCTAGTTTTGAAGATCTCATCGC 59.855 42.308 11.05 0.00 37.77 4.58
266 267 5.037385 TCTAGTTTTGAAGATCTCATCGCG 58.963 41.667 0.00 0.00 32.78 5.87
267 268 3.849911 AGTTTTGAAGATCTCATCGCGA 58.150 40.909 13.09 13.09 32.78 5.87
268 269 3.862267 AGTTTTGAAGATCTCATCGCGAG 59.138 43.478 16.66 7.11 43.80 5.03
269 270 2.498807 TTGAAGATCTCATCGCGAGG 57.501 50.000 15.81 15.81 42.55 4.63
270 271 0.670706 TGAAGATCTCATCGCGAGGG 59.329 55.000 21.76 12.63 42.55 4.30
271 272 0.955178 GAAGATCTCATCGCGAGGGA 59.045 55.000 21.76 16.72 42.55 4.20
272 273 1.543802 GAAGATCTCATCGCGAGGGAT 59.456 52.381 21.76 20.51 42.55 3.85
273 274 1.626686 AGATCTCATCGCGAGGGATT 58.373 50.000 21.76 5.43 42.55 3.01
274 275 1.967066 AGATCTCATCGCGAGGGATTT 59.033 47.619 21.76 13.93 42.55 2.17
275 276 3.157881 AGATCTCATCGCGAGGGATTTA 58.842 45.455 21.76 0.00 42.55 1.40
276 277 3.574396 AGATCTCATCGCGAGGGATTTAA 59.426 43.478 21.76 0.00 42.55 1.52
277 278 4.221703 AGATCTCATCGCGAGGGATTTAAT 59.778 41.667 21.76 8.75 42.55 1.40
278 279 3.653344 TCTCATCGCGAGGGATTTAATG 58.347 45.455 21.76 7.60 42.55 1.90
279 280 2.738846 CTCATCGCGAGGGATTTAATGG 59.261 50.000 21.76 0.53 38.18 3.16
280 281 2.104111 TCATCGCGAGGGATTTAATGGT 59.896 45.455 21.76 0.00 0.00 3.55
281 282 1.948104 TCGCGAGGGATTTAATGGTG 58.052 50.000 3.71 0.00 0.00 4.17
282 283 1.483004 TCGCGAGGGATTTAATGGTGA 59.517 47.619 3.71 0.00 0.00 4.02
283 284 2.093394 TCGCGAGGGATTTAATGGTGAA 60.093 45.455 3.71 0.00 0.00 3.18
284 285 2.680841 CGCGAGGGATTTAATGGTGAAA 59.319 45.455 0.00 0.00 0.00 2.69
285 286 3.127895 CGCGAGGGATTTAATGGTGAAAA 59.872 43.478 0.00 0.00 0.00 2.29
286 287 4.421058 GCGAGGGATTTAATGGTGAAAAC 58.579 43.478 0.00 0.00 0.00 2.43
287 288 4.658071 CGAGGGATTTAATGGTGAAAACG 58.342 43.478 0.00 0.00 0.00 3.60
288 289 4.438200 CGAGGGATTTAATGGTGAAAACGG 60.438 45.833 0.00 0.00 0.00 4.44
289 290 4.668636 AGGGATTTAATGGTGAAAACGGA 58.331 39.130 0.00 0.00 0.00 4.69
290 291 5.269189 AGGGATTTAATGGTGAAAACGGAT 58.731 37.500 0.00 0.00 0.00 4.18
291 292 5.719563 AGGGATTTAATGGTGAAAACGGATT 59.280 36.000 0.00 0.00 0.00 3.01
292 293 6.212589 AGGGATTTAATGGTGAAAACGGATTT 59.787 34.615 0.00 0.00 0.00 2.17
293 294 6.876789 GGGATTTAATGGTGAAAACGGATTTT 59.123 34.615 0.00 0.00 40.83 1.82
306 307 7.722795 AAAACGGATTTTCAATCGGATTTTT 57.277 28.000 0.00 5.70 32.29 1.94
307 308 6.944557 AACGGATTTTCAATCGGATTTTTC 57.055 33.333 0.00 0.00 0.00 2.29
308 309 5.092781 ACGGATTTTCAATCGGATTTTTCG 58.907 37.500 0.00 2.07 0.00 3.46
309 310 5.092781 CGGATTTTCAATCGGATTTTTCGT 58.907 37.500 0.00 0.00 0.00 3.85
310 311 5.571357 CGGATTTTCAATCGGATTTTTCGTT 59.429 36.000 0.00 0.00 0.00 3.85
311 312 6.088883 CGGATTTTCAATCGGATTTTTCGTTT 59.911 34.615 0.00 0.00 0.00 3.60
312 313 7.271653 CGGATTTTCAATCGGATTTTTCGTTTA 59.728 33.333 0.00 0.00 0.00 2.01
313 314 8.917655 GGATTTTCAATCGGATTTTTCGTTTAA 58.082 29.630 0.00 0.00 0.00 1.52
314 315 9.937577 GATTTTCAATCGGATTTTTCGTTTAAG 57.062 29.630 0.00 0.00 0.00 1.85
315 316 9.685828 ATTTTCAATCGGATTTTTCGTTTAAGA 57.314 25.926 0.00 0.00 0.00 2.10
316 317 8.722342 TTTCAATCGGATTTTTCGTTTAAGAG 57.278 30.769 0.00 0.00 0.00 2.85
317 318 7.661127 TCAATCGGATTTTTCGTTTAAGAGA 57.339 32.000 0.00 0.00 0.00 3.10
318 319 8.263940 TCAATCGGATTTTTCGTTTAAGAGAT 57.736 30.769 0.00 0.00 0.00 2.75
319 320 9.373603 TCAATCGGATTTTTCGTTTAAGAGATA 57.626 29.630 0.00 0.00 0.00 1.98
320 321 9.982291 CAATCGGATTTTTCGTTTAAGAGATAA 57.018 29.630 0.00 0.00 0.00 1.75
323 324 9.815936 TCGGATTTTTCGTTTAAGAGATAAAAC 57.184 29.630 0.00 0.00 35.33 2.43
324 325 9.601971 CGGATTTTTCGTTTAAGAGATAAAACA 57.398 29.630 0.00 0.00 35.33 2.83
355 356 9.685276 AAAAACTGAAAATCCAAAAAGATTCCT 57.315 25.926 0.00 0.00 35.40 3.36
356 357 8.667076 AAACTGAAAATCCAAAAAGATTCCTG 57.333 30.769 0.00 0.00 35.40 3.86
357 358 6.226052 ACTGAAAATCCAAAAAGATTCCTGC 58.774 36.000 0.00 0.00 35.40 4.85
358 359 6.172136 TGAAAATCCAAAAAGATTCCTGCA 57.828 33.333 0.00 0.00 35.40 4.41
359 360 6.771573 TGAAAATCCAAAAAGATTCCTGCAT 58.228 32.000 0.00 0.00 35.40 3.96
360 361 6.651643 TGAAAATCCAAAAAGATTCCTGCATG 59.348 34.615 0.00 0.00 35.40 4.06
361 362 3.598019 TCCAAAAAGATTCCTGCATGC 57.402 42.857 11.82 11.82 0.00 4.06
362 363 2.898612 TCCAAAAAGATTCCTGCATGCA 59.101 40.909 21.29 21.29 0.00 3.96
363 364 3.516300 TCCAAAAAGATTCCTGCATGCAT 59.484 39.130 22.97 5.92 0.00 3.96
364 365 3.621268 CCAAAAAGATTCCTGCATGCATG 59.379 43.478 22.97 22.70 0.00 4.06
377 378 2.711311 GCATGCATGCGATGACGT 59.289 55.556 33.99 0.00 44.67 4.34
378 379 1.653232 GCATGCATGCGATGACGTG 60.653 57.895 33.99 3.92 44.67 4.49
379 380 1.010462 CATGCATGCGATGACGTGG 60.010 57.895 14.93 0.00 41.98 4.94
380 381 2.827051 ATGCATGCGATGACGTGGC 61.827 57.895 14.09 0.00 41.98 5.01
381 382 3.498834 GCATGCGATGACGTGGCA 61.499 61.111 0.00 6.82 45.88 4.92
382 383 3.037992 GCATGCGATGACGTGGCAA 62.038 57.895 8.50 0.00 44.94 4.52
383 384 1.723273 CATGCGATGACGTGGCAAT 59.277 52.632 8.50 0.00 44.94 3.56
384 385 0.316442 CATGCGATGACGTGGCAATC 60.316 55.000 8.50 0.00 44.94 2.67
385 386 0.462581 ATGCGATGACGTGGCAATCT 60.463 50.000 8.50 0.00 44.94 2.40
386 387 1.349627 GCGATGACGTGGCAATCTG 59.650 57.895 0.00 0.00 41.98 2.90
387 388 1.361668 GCGATGACGTGGCAATCTGT 61.362 55.000 0.00 0.00 41.98 3.41
388 389 1.078709 CGATGACGTGGCAATCTGTT 58.921 50.000 0.00 0.00 34.56 3.16
389 390 1.464608 CGATGACGTGGCAATCTGTTT 59.535 47.619 0.00 0.00 34.56 2.83
390 391 2.670905 CGATGACGTGGCAATCTGTTTA 59.329 45.455 0.00 0.00 34.56 2.01
391 392 3.483574 CGATGACGTGGCAATCTGTTTAC 60.484 47.826 0.00 0.00 34.56 2.01
392 393 2.839975 TGACGTGGCAATCTGTTTACA 58.160 42.857 0.00 0.00 0.00 2.41
393 394 3.407698 TGACGTGGCAATCTGTTTACAT 58.592 40.909 0.00 0.00 0.00 2.29
394 395 3.818210 TGACGTGGCAATCTGTTTACATT 59.182 39.130 0.00 0.00 0.00 2.71
395 396 4.998033 TGACGTGGCAATCTGTTTACATTA 59.002 37.500 0.00 0.00 0.00 1.90
396 397 5.121611 TGACGTGGCAATCTGTTTACATTAG 59.878 40.000 0.00 0.00 0.00 1.73
397 398 5.242434 ACGTGGCAATCTGTTTACATTAGA 58.758 37.500 0.00 0.00 0.00 2.10
398 399 5.351465 ACGTGGCAATCTGTTTACATTAGAG 59.649 40.000 0.00 0.00 0.00 2.43
399 400 5.580691 CGTGGCAATCTGTTTACATTAGAGA 59.419 40.000 0.00 0.00 0.00 3.10
400 401 6.455646 CGTGGCAATCTGTTTACATTAGAGAC 60.456 42.308 0.00 0.00 0.00 3.36
401 402 5.580691 TGGCAATCTGTTTACATTAGAGACG 59.419 40.000 0.00 0.00 0.00 4.18
402 403 5.581085 GGCAATCTGTTTACATTAGAGACGT 59.419 40.000 0.00 0.00 0.00 4.34
403 404 6.455646 GGCAATCTGTTTACATTAGAGACGTG 60.456 42.308 0.00 0.00 0.00 4.49
404 405 6.090898 GCAATCTGTTTACATTAGAGACGTGT 59.909 38.462 0.00 0.00 0.00 4.49
405 406 7.448228 CAATCTGTTTACATTAGAGACGTGTG 58.552 38.462 0.00 0.00 0.00 3.82
406 407 5.466819 TCTGTTTACATTAGAGACGTGTGG 58.533 41.667 0.00 0.00 0.00 4.17
407 408 5.010314 TCTGTTTACATTAGAGACGTGTGGT 59.990 40.000 0.00 0.00 0.00 4.16
408 409 4.986034 TGTTTACATTAGAGACGTGTGGTG 59.014 41.667 0.00 0.00 0.00 4.17
409 410 2.080286 ACATTAGAGACGTGTGGTGC 57.920 50.000 0.00 0.00 0.00 5.01
410 411 0.992072 CATTAGAGACGTGTGGTGCG 59.008 55.000 0.00 0.00 0.00 5.34
411 412 0.601558 ATTAGAGACGTGTGGTGCGT 59.398 50.000 0.00 0.00 45.86 5.24
416 417 2.279918 ACGTGTGGTGCGTCTTCC 60.280 61.111 0.00 0.00 38.23 3.46
417 418 2.029073 CGTGTGGTGCGTCTTCCT 59.971 61.111 0.00 0.00 0.00 3.36
418 419 1.594293 CGTGTGGTGCGTCTTCCTT 60.594 57.895 0.00 0.00 0.00 3.36
419 420 1.157870 CGTGTGGTGCGTCTTCCTTT 61.158 55.000 0.00 0.00 0.00 3.11
420 421 0.586802 GTGTGGTGCGTCTTCCTTTC 59.413 55.000 0.00 0.00 0.00 2.62
421 422 0.468226 TGTGGTGCGTCTTCCTTTCT 59.532 50.000 0.00 0.00 0.00 2.52
422 423 0.868406 GTGGTGCGTCTTCCTTTCTG 59.132 55.000 0.00 0.00 0.00 3.02
423 424 0.884704 TGGTGCGTCTTCCTTTCTGC 60.885 55.000 0.00 0.00 0.00 4.26
424 425 1.578206 GGTGCGTCTTCCTTTCTGCC 61.578 60.000 0.00 0.00 0.00 4.85
425 426 1.667830 TGCGTCTTCCTTTCTGCCG 60.668 57.895 0.00 0.00 0.00 5.69
426 427 3.028366 GCGTCTTCCTTTCTGCCGC 62.028 63.158 0.00 0.00 0.00 6.53
427 428 1.667830 CGTCTTCCTTTCTGCCGCA 60.668 57.895 0.00 0.00 0.00 5.69
428 429 1.869690 GTCTTCCTTTCTGCCGCAC 59.130 57.895 0.00 0.00 0.00 5.34
429 430 1.667830 TCTTCCTTTCTGCCGCACG 60.668 57.895 0.00 0.00 0.00 5.34
430 431 1.961277 CTTCCTTTCTGCCGCACGT 60.961 57.895 0.00 0.00 0.00 4.49
431 432 2.175184 CTTCCTTTCTGCCGCACGTG 62.175 60.000 12.28 12.28 0.00 4.49
432 433 2.933878 TTCCTTTCTGCCGCACGTGT 62.934 55.000 18.38 0.00 0.00 4.49
433 434 2.249309 CTTTCTGCCGCACGTGTG 59.751 61.111 22.06 22.06 0.00 3.82
434 435 2.202946 TTTCTGCCGCACGTGTGA 60.203 55.556 29.80 10.48 0.00 3.58
435 436 2.430080 CTTTCTGCCGCACGTGTGAC 62.430 60.000 29.80 19.77 0.00 3.67
436 437 3.724914 TTCTGCCGCACGTGTGACA 62.725 57.895 29.80 23.44 0.00 3.58
437 438 3.705638 CTGCCGCACGTGTGACAG 61.706 66.667 27.01 27.01 0.00 3.51
438 439 4.522689 TGCCGCACGTGTGACAGT 62.523 61.111 29.80 0.00 0.00 3.55
439 440 3.269347 GCCGCACGTGTGACAGTT 61.269 61.111 29.80 0.00 0.00 3.16
440 441 1.952133 GCCGCACGTGTGACAGTTA 60.952 57.895 29.80 0.00 0.00 2.24
441 442 1.886861 GCCGCACGTGTGACAGTTAG 61.887 60.000 29.80 12.33 0.00 2.34
442 443 1.487231 CGCACGTGTGACAGTTAGC 59.513 57.895 24.50 0.00 0.00 3.09
443 444 1.487231 GCACGTGTGACAGTTAGCG 59.513 57.895 18.38 0.00 0.00 4.26
444 445 1.487231 CACGTGTGACAGTTAGCGC 59.513 57.895 7.58 0.00 0.00 5.92
445 446 2.014554 ACGTGTGACAGTTAGCGCG 61.015 57.895 0.00 0.00 40.18 6.86
446 447 1.728074 CGTGTGACAGTTAGCGCGA 60.728 57.895 12.10 0.00 37.06 5.87
447 448 1.773496 GTGTGACAGTTAGCGCGAC 59.227 57.895 12.10 5.15 0.00 5.19
448 449 1.372499 TGTGACAGTTAGCGCGACC 60.372 57.895 12.10 0.00 0.00 4.79
449 450 2.092882 GTGACAGTTAGCGCGACCC 61.093 63.158 12.10 0.00 0.00 4.46
450 451 2.273179 TGACAGTTAGCGCGACCCT 61.273 57.895 12.10 0.00 0.00 4.34
451 452 0.961857 TGACAGTTAGCGCGACCCTA 60.962 55.000 12.10 0.00 0.00 3.53
452 453 0.171903 GACAGTTAGCGCGACCCTAA 59.828 55.000 12.10 5.30 0.00 2.69
453 454 0.604578 ACAGTTAGCGCGACCCTAAA 59.395 50.000 12.10 0.00 0.00 1.85
454 455 1.206371 ACAGTTAGCGCGACCCTAAAT 59.794 47.619 12.10 4.53 0.00 1.40
455 456 1.593006 CAGTTAGCGCGACCCTAAATG 59.407 52.381 12.10 13.85 35.44 2.32
456 457 1.206371 AGTTAGCGCGACCCTAAATGT 59.794 47.619 12.10 0.00 0.00 2.71
457 458 2.004733 GTTAGCGCGACCCTAAATGTT 58.995 47.619 12.10 0.00 0.00 2.71
458 459 2.389962 TAGCGCGACCCTAAATGTTT 57.610 45.000 12.10 0.00 0.00 2.83
459 460 2.389962 AGCGCGACCCTAAATGTTTA 57.610 45.000 12.10 0.00 0.00 2.01
460 461 2.914059 AGCGCGACCCTAAATGTTTAT 58.086 42.857 12.10 0.00 0.00 1.40
461 462 3.275999 AGCGCGACCCTAAATGTTTATT 58.724 40.909 12.10 0.00 0.00 1.40
462 463 3.692593 AGCGCGACCCTAAATGTTTATTT 59.307 39.130 12.10 0.00 39.69 1.40
463 464 4.157105 AGCGCGACCCTAAATGTTTATTTT 59.843 37.500 12.10 0.00 37.64 1.82
464 465 4.264380 GCGCGACCCTAAATGTTTATTTTG 59.736 41.667 12.10 0.00 37.64 2.44
465 466 4.796312 CGCGACCCTAAATGTTTATTTTGG 59.204 41.667 0.00 6.34 44.02 3.28
466 467 5.392165 CGCGACCCTAAATGTTTATTTTGGA 60.392 40.000 0.00 0.00 45.91 3.53
467 468 5.803461 GCGACCCTAAATGTTTATTTTGGAC 59.197 40.000 12.60 7.22 45.91 4.02
468 469 6.349860 GCGACCCTAAATGTTTATTTTGGACT 60.350 38.462 12.60 1.08 45.91 3.85
469 470 7.148205 GCGACCCTAAATGTTTATTTTGGACTA 60.148 37.037 12.60 0.00 45.91 2.59
470 471 8.899771 CGACCCTAAATGTTTATTTTGGACTAT 58.100 33.333 12.60 0.00 45.91 2.12
484 485 2.014857 GGACTATTTCCGTTTCCCAGC 58.985 52.381 0.00 0.00 33.46 4.85
485 486 2.355818 GGACTATTTCCGTTTCCCAGCT 60.356 50.000 0.00 0.00 33.46 4.24
486 487 3.118519 GGACTATTTCCGTTTCCCAGCTA 60.119 47.826 0.00 0.00 33.46 3.32
487 488 4.510571 GACTATTTCCGTTTCCCAGCTAA 58.489 43.478 0.00 0.00 0.00 3.09
488 489 4.514401 ACTATTTCCGTTTCCCAGCTAAG 58.486 43.478 0.00 0.00 0.00 2.18
489 490 1.530323 TTTCCGTTTCCCAGCTAAGC 58.470 50.000 0.00 0.00 0.00 3.09
490 491 0.398696 TTCCGTTTCCCAGCTAAGCA 59.601 50.000 0.00 0.00 0.00 3.91
491 492 0.036388 TCCGTTTCCCAGCTAAGCAG 60.036 55.000 0.00 0.00 0.00 4.24
492 493 0.321653 CCGTTTCCCAGCTAAGCAGT 60.322 55.000 0.00 0.00 0.00 4.40
493 494 1.066430 CCGTTTCCCAGCTAAGCAGTA 60.066 52.381 0.00 0.00 0.00 2.74
494 495 2.614481 CCGTTTCCCAGCTAAGCAGTAA 60.614 50.000 0.00 0.00 0.00 2.24
495 496 3.270877 CGTTTCCCAGCTAAGCAGTAAT 58.729 45.455 0.00 0.00 0.00 1.89
496 497 3.063997 CGTTTCCCAGCTAAGCAGTAATG 59.936 47.826 0.00 0.00 0.00 1.90
497 498 2.332063 TCCCAGCTAAGCAGTAATGC 57.668 50.000 7.15 7.15 0.00 3.56
498 499 1.559219 TCCCAGCTAAGCAGTAATGCA 59.441 47.619 18.53 0.00 37.25 3.96
499 500 1.672881 CCCAGCTAAGCAGTAATGCAC 59.327 52.381 18.53 3.73 37.25 4.57
500 501 2.358957 CCAGCTAAGCAGTAATGCACA 58.641 47.619 18.53 3.19 37.25 4.57
501 502 2.096496 CCAGCTAAGCAGTAATGCACAC 59.904 50.000 18.53 3.73 37.25 3.82
502 503 2.743664 CAGCTAAGCAGTAATGCACACA 59.256 45.455 18.53 0.00 37.25 3.72
503 504 2.744202 AGCTAAGCAGTAATGCACACAC 59.256 45.455 18.53 2.63 37.25 3.82
504 505 2.474526 GCTAAGCAGTAATGCACACACG 60.475 50.000 18.53 0.64 37.25 4.49
505 506 0.238289 AAGCAGTAATGCACACACGC 59.762 50.000 18.53 0.00 37.25 5.34
506 507 1.509787 GCAGTAATGCACACACGCG 60.510 57.895 10.86 3.53 34.41 6.01
507 508 1.509787 CAGTAATGCACACACGCGC 60.510 57.895 5.73 0.00 33.35 6.86
508 509 2.570581 GTAATGCACACACGCGCG 60.571 61.111 30.96 30.96 33.35 6.86
509 510 2.735100 TAATGCACACACGCGCGA 60.735 55.556 39.36 13.09 33.35 5.87
510 511 3.005901 TAATGCACACACGCGCGAC 62.006 57.895 39.36 17.64 33.35 5.19
552 553 1.075542 CGCAGCCAACATCGAACTTA 58.924 50.000 0.00 0.00 0.00 2.24
577 578 1.429423 GCCGAAGCAGATTTTCCCG 59.571 57.895 0.00 0.00 39.53 5.14
603 604 1.208165 TCCCCTGCTTTTCTCCTCCC 61.208 60.000 0.00 0.00 0.00 4.30
604 605 1.500783 CCCCTGCTTTTCTCCTCCCA 61.501 60.000 0.00 0.00 0.00 4.37
605 606 0.627986 CCCTGCTTTTCTCCTCCCAT 59.372 55.000 0.00 0.00 0.00 4.00
642 643 2.604174 CCGTCACGCCAAAGTCACC 61.604 63.158 0.00 0.00 0.00 4.02
663 664 2.282180 GCCCCCACGAAAGCTTCA 60.282 61.111 0.00 0.00 0.00 3.02
706 709 0.038526 CTAACCTGCCGTCGTTGACT 60.039 55.000 0.00 0.00 0.00 3.41
716 719 4.853507 CGTTGACTACGCGGAAGA 57.146 55.556 12.47 0.00 44.26 2.87
717 720 3.096541 CGTTGACTACGCGGAAGAA 57.903 52.632 12.47 0.00 44.26 2.52
718 721 1.411394 CGTTGACTACGCGGAAGAAA 58.589 50.000 12.47 5.41 44.26 2.52
737 750 1.601166 AAAGAAAAACCTCCCGTCCG 58.399 50.000 0.00 0.00 0.00 4.79
781 794 2.506217 CCACGATGACCACGGACG 60.506 66.667 0.00 0.00 34.93 4.79
793 806 1.682684 ACGGACGGCATCTCTCCTT 60.683 57.895 0.00 0.00 0.00 3.36
816 832 1.734137 CCTGCATGCCATGAAGCTC 59.266 57.895 16.68 0.00 34.39 4.09
893 910 0.666913 AGCAGCAAAGCACAACTCTG 59.333 50.000 0.00 0.00 36.85 3.35
938 957 0.321653 ACAGGCAGGATCGACCAAAC 60.322 55.000 6.78 0.00 42.04 2.93
944 963 2.604614 GCAGGATCGACCAAACACAAAC 60.605 50.000 6.78 0.00 42.04 2.93
1063 1082 3.934391 CTGGACCAGAACGGCGACC 62.934 68.421 17.22 4.28 39.03 4.79
1269 1306 3.157252 GAGCTGAGGATCCGGGCA 61.157 66.667 21.97 14.35 0.00 5.36
1392 4302 3.204827 GAGTGCCGCGCCATGATT 61.205 61.111 0.00 0.00 0.00 2.57
2045 5806 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2046 5807 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2047 5808 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2049 5810 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2050 5811 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2052 5813 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2053 5814 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2055 5816 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2057 5818 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2058 5819 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2059 5820 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.822685 ATTGCCATGGCTCATACAAAAA 57.177 36.364 35.53 19.25 42.51 1.94
1 2 4.822685 AATTGCCATGGCTCATACAAAA 57.177 36.364 35.53 19.97 42.51 2.44
2 3 4.822685 AAATTGCCATGGCTCATACAAA 57.177 36.364 35.53 20.70 42.51 2.83
3 4 4.822685 AAAATTGCCATGGCTCATACAA 57.177 36.364 35.53 21.43 42.51 2.41
4 5 4.202000 CGTAAAATTGCCATGGCTCATACA 60.202 41.667 35.53 13.42 42.51 2.29
5 6 4.202010 ACGTAAAATTGCCATGGCTCATAC 60.202 41.667 35.53 25.86 42.51 2.39
6 7 3.951037 ACGTAAAATTGCCATGGCTCATA 59.049 39.130 35.53 19.13 42.51 2.15
7 8 2.760092 ACGTAAAATTGCCATGGCTCAT 59.240 40.909 35.53 24.37 42.51 2.90
8 9 2.094803 CACGTAAAATTGCCATGGCTCA 60.095 45.455 35.53 23.24 42.51 4.26
9 10 2.529151 CACGTAAAATTGCCATGGCTC 58.471 47.619 35.53 10.47 42.51 4.70
10 11 1.404047 GCACGTAAAATTGCCATGGCT 60.404 47.619 35.53 18.89 42.51 4.75
11 12 0.998669 GCACGTAAAATTGCCATGGC 59.001 50.000 30.54 30.54 42.35 4.40
12 13 2.360553 TGCACGTAAAATTGCCATGG 57.639 45.000 7.63 7.63 38.00 3.66
13 14 2.029486 GCATGCACGTAAAATTGCCATG 59.971 45.455 14.21 0.00 38.00 3.66
14 15 2.270047 GCATGCACGTAAAATTGCCAT 58.730 42.857 14.21 0.00 38.00 4.40
15 16 1.000171 TGCATGCACGTAAAATTGCCA 60.000 42.857 18.46 0.00 38.00 4.92
16 17 1.707632 TGCATGCACGTAAAATTGCC 58.292 45.000 18.46 0.00 38.00 4.52
17 18 2.922387 TGATGCATGCACGTAAAATTGC 59.078 40.909 25.37 3.08 39.33 3.56
18 19 4.026393 CCATGATGCATGCACGTAAAATTG 60.026 41.667 25.37 11.62 40.20 2.32
19 20 4.114073 CCATGATGCATGCACGTAAAATT 58.886 39.130 25.37 3.73 40.20 1.82
20 21 3.708890 CCATGATGCATGCACGTAAAAT 58.291 40.909 25.37 4.65 40.20 1.82
21 22 2.734809 GCCATGATGCATGCACGTAAAA 60.735 45.455 25.37 5.38 40.20 1.52
22 23 1.202279 GCCATGATGCATGCACGTAAA 60.202 47.619 25.37 7.31 40.20 2.01
23 24 0.381445 GCCATGATGCATGCACGTAA 59.619 50.000 25.37 9.28 40.20 3.18
24 25 0.747283 TGCCATGATGCATGCACGTA 60.747 50.000 25.37 12.75 40.20 3.57
25 26 1.596895 TTGCCATGATGCATGCACGT 61.597 50.000 25.37 15.22 41.70 4.49
26 27 0.249280 ATTGCCATGATGCATGCACG 60.249 50.000 25.37 11.76 41.70 5.34
27 28 1.948104 AATTGCCATGATGCATGCAC 58.052 45.000 25.37 17.16 41.70 4.57
28 29 2.700722 AAATTGCCATGATGCATGCA 57.299 40.000 25.04 25.04 41.70 3.96
29 30 4.124238 ACTAAAATTGCCATGATGCATGC 58.876 39.130 11.82 11.82 41.70 4.06
30 31 6.671614 AAACTAAAATTGCCATGATGCATG 57.328 33.333 2.46 0.00 41.70 4.06
31 32 7.442969 CCATAAACTAAAATTGCCATGATGCAT 59.557 33.333 0.00 0.00 41.70 3.96
32 33 6.762187 CCATAAACTAAAATTGCCATGATGCA 59.238 34.615 0.00 0.00 40.07 3.96
33 34 6.762661 ACCATAAACTAAAATTGCCATGATGC 59.237 34.615 0.00 0.00 0.00 3.91
34 35 8.721019 AACCATAAACTAAAATTGCCATGATG 57.279 30.769 0.00 0.00 0.00 3.07
35 36 8.538701 TGAACCATAAACTAAAATTGCCATGAT 58.461 29.630 0.00 0.00 0.00 2.45
36 37 7.901029 TGAACCATAAACTAAAATTGCCATGA 58.099 30.769 0.00 0.00 0.00 3.07
37 38 8.605746 CATGAACCATAAACTAAAATTGCCATG 58.394 33.333 0.00 0.00 0.00 3.66
38 39 7.769970 CCATGAACCATAAACTAAAATTGCCAT 59.230 33.333 0.00 0.00 0.00 4.40
39 40 7.102346 CCATGAACCATAAACTAAAATTGCCA 58.898 34.615 0.00 0.00 0.00 4.92
40 41 6.037062 GCCATGAACCATAAACTAAAATTGCC 59.963 38.462 0.00 0.00 0.00 4.52
41 42 6.593382 TGCCATGAACCATAAACTAAAATTGC 59.407 34.615 0.00 0.00 0.00 3.56
42 43 8.545229 TTGCCATGAACCATAAACTAAAATTG 57.455 30.769 0.00 0.00 0.00 2.32
43 44 8.374743 ACTTGCCATGAACCATAAACTAAAATT 58.625 29.630 0.00 0.00 0.00 1.82
44 45 7.906327 ACTTGCCATGAACCATAAACTAAAAT 58.094 30.769 0.00 0.00 0.00 1.82
45 46 7.232534 AGACTTGCCATGAACCATAAACTAAAA 59.767 33.333 0.00 0.00 0.00 1.52
46 47 6.719370 AGACTTGCCATGAACCATAAACTAAA 59.281 34.615 0.00 0.00 0.00 1.85
47 48 6.245408 AGACTTGCCATGAACCATAAACTAA 58.755 36.000 0.00 0.00 0.00 2.24
48 49 5.815581 AGACTTGCCATGAACCATAAACTA 58.184 37.500 0.00 0.00 0.00 2.24
49 50 4.666512 AGACTTGCCATGAACCATAAACT 58.333 39.130 0.00 0.00 0.00 2.66
50 51 5.648092 ACTAGACTTGCCATGAACCATAAAC 59.352 40.000 0.00 0.00 0.00 2.01
51 52 5.815581 ACTAGACTTGCCATGAACCATAAA 58.184 37.500 0.00 0.00 0.00 1.40
52 53 5.435686 ACTAGACTTGCCATGAACCATAA 57.564 39.130 0.00 0.00 0.00 1.90
53 54 5.435686 AACTAGACTTGCCATGAACCATA 57.564 39.130 0.00 0.00 0.00 2.74
54 55 4.307032 AACTAGACTTGCCATGAACCAT 57.693 40.909 0.00 0.00 0.00 3.55
55 56 3.788227 AACTAGACTTGCCATGAACCA 57.212 42.857 0.00 0.00 0.00 3.67
56 57 4.327680 AGAAACTAGACTTGCCATGAACC 58.672 43.478 0.00 0.00 0.00 3.62
57 58 5.948992 AAGAAACTAGACTTGCCATGAAC 57.051 39.130 0.00 0.00 0.00 3.18
58 59 8.635765 AATTAAGAAACTAGACTTGCCATGAA 57.364 30.769 0.00 0.00 0.00 2.57
59 60 7.336931 GGAATTAAGAAACTAGACTTGCCATGA 59.663 37.037 0.00 0.00 0.00 3.07
60 61 7.415653 GGGAATTAAGAAACTAGACTTGCCATG 60.416 40.741 0.00 0.00 0.00 3.66
61 62 6.603599 GGGAATTAAGAAACTAGACTTGCCAT 59.396 38.462 0.00 0.00 0.00 4.40
62 63 5.944007 GGGAATTAAGAAACTAGACTTGCCA 59.056 40.000 0.00 0.00 0.00 4.92
63 64 5.357314 GGGGAATTAAGAAACTAGACTTGCC 59.643 44.000 0.00 0.00 0.00 4.52
64 65 5.064834 CGGGGAATTAAGAAACTAGACTTGC 59.935 44.000 0.00 0.00 0.00 4.01
65 66 6.171213 ACGGGGAATTAAGAAACTAGACTTG 58.829 40.000 0.00 0.00 0.00 3.16
66 67 6.370186 ACGGGGAATTAAGAAACTAGACTT 57.630 37.500 0.00 1.96 0.00 3.01
67 68 6.370186 AACGGGGAATTAAGAAACTAGACT 57.630 37.500 0.00 0.00 0.00 3.24
68 69 7.444629 AAAACGGGGAATTAAGAAACTAGAC 57.555 36.000 0.00 0.00 0.00 2.59
76 77 9.463902 TGACATTTATAAAACGGGGAATTAAGA 57.536 29.630 1.21 0.00 0.00 2.10
80 81 9.952030 ATTTTGACATTTATAAAACGGGGAATT 57.048 25.926 1.21 0.00 0.00 2.17
81 82 9.952030 AATTTTGACATTTATAAAACGGGGAAT 57.048 25.926 1.21 0.00 0.00 3.01
82 83 9.780186 AAATTTTGACATTTATAAAACGGGGAA 57.220 25.926 1.21 0.00 0.00 3.97
125 126 7.784037 TGCCATGATATGTTTCAGCTATTTTT 58.216 30.769 0.00 0.00 0.00 1.94
126 127 7.350744 TGCCATGATATGTTTCAGCTATTTT 57.649 32.000 0.00 0.00 0.00 1.82
127 128 6.964807 TGCCATGATATGTTTCAGCTATTT 57.035 33.333 0.00 0.00 0.00 1.40
128 129 6.548622 AGTTGCCATGATATGTTTCAGCTATT 59.451 34.615 0.00 0.00 0.00 1.73
129 130 6.066690 AGTTGCCATGATATGTTTCAGCTAT 58.933 36.000 0.00 0.00 0.00 2.97
130 131 5.439721 AGTTGCCATGATATGTTTCAGCTA 58.560 37.500 0.00 0.00 0.00 3.32
131 132 4.275810 AGTTGCCATGATATGTTTCAGCT 58.724 39.130 0.00 0.00 0.00 4.24
132 133 4.644103 AGTTGCCATGATATGTTTCAGC 57.356 40.909 0.00 0.00 0.00 4.26
133 134 6.127814 ACTCAAGTTGCCATGATATGTTTCAG 60.128 38.462 0.00 0.00 0.00 3.02
134 135 5.711506 ACTCAAGTTGCCATGATATGTTTCA 59.288 36.000 0.00 0.00 0.00 2.69
135 136 6.032094 CACTCAAGTTGCCATGATATGTTTC 58.968 40.000 0.00 0.00 0.00 2.78
136 137 5.477984 ACACTCAAGTTGCCATGATATGTTT 59.522 36.000 0.00 0.00 0.00 2.83
137 138 5.012239 ACACTCAAGTTGCCATGATATGTT 58.988 37.500 0.00 0.00 0.00 2.71
138 139 4.592942 ACACTCAAGTTGCCATGATATGT 58.407 39.130 0.00 0.00 0.00 2.29
139 140 6.682423 TTACACTCAAGTTGCCATGATATG 57.318 37.500 0.00 0.00 0.00 1.78
140 141 6.658816 TGTTTACACTCAAGTTGCCATGATAT 59.341 34.615 0.00 0.00 0.00 1.63
141 142 6.000840 TGTTTACACTCAAGTTGCCATGATA 58.999 36.000 0.00 0.00 0.00 2.15
142 143 4.826733 TGTTTACACTCAAGTTGCCATGAT 59.173 37.500 0.00 0.00 0.00 2.45
143 144 4.203226 TGTTTACACTCAAGTTGCCATGA 58.797 39.130 0.00 0.00 0.00 3.07
144 145 4.566545 TGTTTACACTCAAGTTGCCATG 57.433 40.909 0.00 0.00 0.00 3.66
145 146 4.826733 TGATGTTTACACTCAAGTTGCCAT 59.173 37.500 0.00 0.00 0.00 4.40
146 147 4.203226 TGATGTTTACACTCAAGTTGCCA 58.797 39.130 0.00 0.00 0.00 4.92
147 148 4.829064 TGATGTTTACACTCAAGTTGCC 57.171 40.909 0.00 0.00 0.00 4.52
148 149 5.156355 CCATGATGTTTACACTCAAGTTGC 58.844 41.667 0.00 0.00 0.00 4.17
149 150 5.156355 GCCATGATGTTTACACTCAAGTTG 58.844 41.667 0.00 0.00 0.00 3.16
150 151 4.826733 TGCCATGATGTTTACACTCAAGTT 59.173 37.500 0.00 0.00 0.00 2.66
151 152 4.397420 TGCCATGATGTTTACACTCAAGT 58.603 39.130 0.00 0.00 0.00 3.16
152 153 5.375417 TTGCCATGATGTTTACACTCAAG 57.625 39.130 0.00 0.00 0.00 3.02
153 154 5.981088 ATTGCCATGATGTTTACACTCAA 57.019 34.783 0.00 0.00 0.00 3.02
154 155 5.476254 TGAATTGCCATGATGTTTACACTCA 59.524 36.000 0.00 0.00 0.00 3.41
155 156 5.953183 TGAATTGCCATGATGTTTACACTC 58.047 37.500 0.00 0.00 0.00 3.51
156 157 5.981088 TGAATTGCCATGATGTTTACACT 57.019 34.783 0.00 0.00 0.00 3.55
157 158 7.095940 GCATATGAATTGCCATGATGTTTACAC 60.096 37.037 6.97 0.00 33.95 2.90
158 159 6.924612 GCATATGAATTGCCATGATGTTTACA 59.075 34.615 6.97 0.00 33.95 2.41
159 160 6.924612 TGCATATGAATTGCCATGATGTTTAC 59.075 34.615 6.97 0.00 39.39 2.01
160 161 7.052142 TGCATATGAATTGCCATGATGTTTA 57.948 32.000 6.97 0.00 39.39 2.01
161 162 5.919755 TGCATATGAATTGCCATGATGTTT 58.080 33.333 6.97 0.00 39.39 2.83
162 163 5.538849 TGCATATGAATTGCCATGATGTT 57.461 34.783 6.97 0.00 39.39 2.71
163 164 5.538849 TTGCATATGAATTGCCATGATGT 57.461 34.783 6.97 0.00 39.39 3.06
164 165 7.488150 GTCTATTGCATATGAATTGCCATGATG 59.512 37.037 6.97 0.00 39.39 3.07
165 166 7.177744 TGTCTATTGCATATGAATTGCCATGAT 59.822 33.333 6.97 0.00 39.39 2.45
166 167 6.490721 TGTCTATTGCATATGAATTGCCATGA 59.509 34.615 6.97 0.00 39.39 3.07
167 168 6.683715 TGTCTATTGCATATGAATTGCCATG 58.316 36.000 6.97 0.00 39.39 3.66
168 169 6.904463 TGTCTATTGCATATGAATTGCCAT 57.096 33.333 6.97 0.00 39.39 4.40
169 170 6.294843 CCATGTCTATTGCATATGAATTGCCA 60.295 38.462 6.97 1.96 39.39 4.92
170 171 6.097356 CCATGTCTATTGCATATGAATTGCC 58.903 40.000 6.97 0.00 39.39 4.52
171 172 5.575606 GCCATGTCTATTGCATATGAATTGC 59.424 40.000 6.97 0.00 40.55 3.56
172 173 6.683715 TGCCATGTCTATTGCATATGAATTG 58.316 36.000 6.97 5.20 30.76 2.32
173 174 6.904463 TGCCATGTCTATTGCATATGAATT 57.096 33.333 6.97 0.00 30.76 2.17
174 175 6.492429 AGTTGCCATGTCTATTGCATATGAAT 59.508 34.615 6.97 6.30 35.21 2.57
175 176 5.829391 AGTTGCCATGTCTATTGCATATGAA 59.171 36.000 6.97 0.00 35.21 2.57
176 177 5.379187 AGTTGCCATGTCTATTGCATATGA 58.621 37.500 6.97 0.00 35.21 2.15
177 178 5.700722 AGTTGCCATGTCTATTGCATATG 57.299 39.130 0.00 0.00 35.21 1.78
178 179 6.720112 AAAGTTGCCATGTCTATTGCATAT 57.280 33.333 0.00 0.00 35.21 1.78
179 180 6.528537 AAAAGTTGCCATGTCTATTGCATA 57.471 33.333 0.00 0.00 35.21 3.14
180 181 5.410355 AAAAGTTGCCATGTCTATTGCAT 57.590 34.783 0.00 0.00 35.21 3.96
181 182 4.870123 AAAAGTTGCCATGTCTATTGCA 57.130 36.364 0.00 0.00 33.58 4.08
182 183 6.476706 GGATTAAAAGTTGCCATGTCTATTGC 59.523 38.462 0.00 0.00 0.00 3.56
183 184 7.546358 TGGATTAAAAGTTGCCATGTCTATTG 58.454 34.615 0.00 0.00 0.00 1.90
184 185 7.716799 TGGATTAAAAGTTGCCATGTCTATT 57.283 32.000 0.00 0.00 0.00 1.73
185 186 7.716799 TTGGATTAAAAGTTGCCATGTCTAT 57.283 32.000 0.00 0.00 0.00 1.98
186 187 7.531857 TTTGGATTAAAAGTTGCCATGTCTA 57.468 32.000 0.00 0.00 0.00 2.59
187 188 6.418057 TTTGGATTAAAAGTTGCCATGTCT 57.582 33.333 0.00 0.00 0.00 3.41
188 189 7.489574 TTTTTGGATTAAAAGTTGCCATGTC 57.510 32.000 0.00 0.00 39.29 3.06
215 216 9.386010 CCCATGTTGATATGTTTTGATGAATTT 57.614 29.630 0.00 0.00 0.00 1.82
216 217 8.760735 TCCCATGTTGATATGTTTTGATGAATT 58.239 29.630 0.00 0.00 0.00 2.17
217 218 8.308851 TCCCATGTTGATATGTTTTGATGAAT 57.691 30.769 0.00 0.00 0.00 2.57
218 219 7.715266 TCCCATGTTGATATGTTTTGATGAA 57.285 32.000 0.00 0.00 0.00 2.57
219 220 7.781219 AGATCCCATGTTGATATGTTTTGATGA 59.219 33.333 0.00 0.00 0.00 2.92
220 221 7.948357 AGATCCCATGTTGATATGTTTTGATG 58.052 34.615 0.00 0.00 0.00 3.07
221 222 9.293404 CTAGATCCCATGTTGATATGTTTTGAT 57.707 33.333 0.00 0.00 0.00 2.57
222 223 8.274322 ACTAGATCCCATGTTGATATGTTTTGA 58.726 33.333 0.00 0.00 0.00 2.69
223 224 8.455903 ACTAGATCCCATGTTGATATGTTTTG 57.544 34.615 0.00 0.00 0.00 2.44
224 225 9.479549 AAACTAGATCCCATGTTGATATGTTTT 57.520 29.630 0.00 0.00 0.00 2.43
225 226 9.479549 AAAACTAGATCCCATGTTGATATGTTT 57.520 29.630 0.00 3.85 0.00 2.83
226 227 8.906867 CAAAACTAGATCCCATGTTGATATGTT 58.093 33.333 0.00 0.00 0.00 2.71
227 228 8.274322 TCAAAACTAGATCCCATGTTGATATGT 58.726 33.333 0.00 0.00 0.00 2.29
228 229 8.681486 TCAAAACTAGATCCCATGTTGATATG 57.319 34.615 0.00 0.00 0.00 1.78
229 230 9.347240 CTTCAAAACTAGATCCCATGTTGATAT 57.653 33.333 0.00 0.00 0.00 1.63
230 231 8.548025 TCTTCAAAACTAGATCCCATGTTGATA 58.452 33.333 0.00 0.00 0.00 2.15
231 232 7.405292 TCTTCAAAACTAGATCCCATGTTGAT 58.595 34.615 0.00 0.00 0.00 2.57
232 233 6.778821 TCTTCAAAACTAGATCCCATGTTGA 58.221 36.000 0.00 0.00 0.00 3.18
233 234 7.555554 AGATCTTCAAAACTAGATCCCATGTTG 59.444 37.037 0.00 0.00 38.24 3.33
234 235 7.637511 AGATCTTCAAAACTAGATCCCATGTT 58.362 34.615 0.00 0.00 38.24 2.71
235 236 7.092712 TGAGATCTTCAAAACTAGATCCCATGT 60.093 37.037 0.00 0.00 38.24 3.21
236 237 7.278135 TGAGATCTTCAAAACTAGATCCCATG 58.722 38.462 0.00 0.00 38.24 3.66
237 238 7.443302 TGAGATCTTCAAAACTAGATCCCAT 57.557 36.000 0.00 0.00 38.24 4.00
238 239 6.874278 TGAGATCTTCAAAACTAGATCCCA 57.126 37.500 0.00 1.25 38.24 4.37
239 240 6.644592 CGATGAGATCTTCAAAACTAGATCCC 59.355 42.308 0.00 0.00 39.77 3.85
240 241 6.145371 GCGATGAGATCTTCAAAACTAGATCC 59.855 42.308 0.00 2.51 39.77 3.36
241 242 6.129221 CGCGATGAGATCTTCAAAACTAGATC 60.129 42.308 0.00 0.00 39.77 2.75
242 243 5.689514 CGCGATGAGATCTTCAAAACTAGAT 59.310 40.000 0.00 0.00 39.77 1.98
243 244 5.037385 CGCGATGAGATCTTCAAAACTAGA 58.963 41.667 0.00 0.00 39.77 2.43
244 245 5.037385 TCGCGATGAGATCTTCAAAACTAG 58.963 41.667 3.71 0.00 39.77 2.57
245 246 4.993905 TCGCGATGAGATCTTCAAAACTA 58.006 39.130 3.71 0.00 39.77 2.24
246 247 3.849911 TCGCGATGAGATCTTCAAAACT 58.150 40.909 3.71 0.00 39.77 2.66
258 259 2.738846 CCATTAAATCCCTCGCGATGAG 59.261 50.000 10.36 0.80 44.83 2.90
259 260 2.104111 ACCATTAAATCCCTCGCGATGA 59.896 45.455 10.36 10.40 0.00 2.92
260 261 2.224079 CACCATTAAATCCCTCGCGATG 59.776 50.000 10.36 6.89 0.00 3.84
261 262 2.104111 TCACCATTAAATCCCTCGCGAT 59.896 45.455 10.36 0.00 0.00 4.58
262 263 1.483004 TCACCATTAAATCCCTCGCGA 59.517 47.619 9.26 9.26 0.00 5.87
263 264 1.948104 TCACCATTAAATCCCTCGCG 58.052 50.000 0.00 0.00 0.00 5.87
264 265 4.421058 GTTTTCACCATTAAATCCCTCGC 58.579 43.478 0.00 0.00 0.00 5.03
265 266 4.438200 CCGTTTTCACCATTAAATCCCTCG 60.438 45.833 0.00 0.00 0.00 4.63
266 267 4.703093 TCCGTTTTCACCATTAAATCCCTC 59.297 41.667 0.00 0.00 0.00 4.30
267 268 4.668636 TCCGTTTTCACCATTAAATCCCT 58.331 39.130 0.00 0.00 0.00 4.20
268 269 5.592104 ATCCGTTTTCACCATTAAATCCC 57.408 39.130 0.00 0.00 0.00 3.85
269 270 7.899178 AAAATCCGTTTTCACCATTAAATCC 57.101 32.000 0.00 0.00 32.14 3.01
282 283 7.358848 CGAAAAATCCGATTGAAAATCCGTTTT 60.359 33.333 0.00 0.00 40.13 2.43
283 284 6.088883 CGAAAAATCCGATTGAAAATCCGTTT 59.911 34.615 0.00 0.00 0.00 3.60
284 285 5.571357 CGAAAAATCCGATTGAAAATCCGTT 59.429 36.000 0.00 0.00 0.00 4.44
285 286 5.092781 CGAAAAATCCGATTGAAAATCCGT 58.907 37.500 0.00 0.00 0.00 4.69
286 287 5.092781 ACGAAAAATCCGATTGAAAATCCG 58.907 37.500 0.00 0.00 0.00 4.18
287 288 6.944557 AACGAAAAATCCGATTGAAAATCC 57.055 33.333 0.00 0.00 0.00 3.01
288 289 9.937577 CTTAAACGAAAAATCCGATTGAAAATC 57.062 29.630 0.00 0.00 0.00 2.17
289 290 9.685828 TCTTAAACGAAAAATCCGATTGAAAAT 57.314 25.926 0.00 0.00 0.00 1.82
290 291 9.176181 CTCTTAAACGAAAAATCCGATTGAAAA 57.824 29.630 0.00 0.00 0.00 2.29
291 292 8.561212 TCTCTTAAACGAAAAATCCGATTGAAA 58.439 29.630 0.00 0.00 0.00 2.69
292 293 8.090250 TCTCTTAAACGAAAAATCCGATTGAA 57.910 30.769 0.00 0.00 0.00 2.69
293 294 7.661127 TCTCTTAAACGAAAAATCCGATTGA 57.339 32.000 0.00 0.00 0.00 2.57
294 295 9.982291 TTATCTCTTAAACGAAAAATCCGATTG 57.018 29.630 0.00 0.00 0.00 2.67
297 298 9.815936 GTTTTATCTCTTAAACGAAAAATCCGA 57.184 29.630 0.00 0.00 29.47 4.55
298 299 9.601971 TGTTTTATCTCTTAAACGAAAAATCCG 57.398 29.630 0.00 0.00 37.12 4.18
329 330 9.685276 AGGAATCTTTTTGGATTTTCAGTTTTT 57.315 25.926 0.00 0.00 36.24 1.94
330 331 9.112725 CAGGAATCTTTTTGGATTTTCAGTTTT 57.887 29.630 0.00 0.00 36.24 2.43
331 332 7.227314 GCAGGAATCTTTTTGGATTTTCAGTTT 59.773 33.333 0.00 0.00 36.24 2.66
332 333 6.707608 GCAGGAATCTTTTTGGATTTTCAGTT 59.292 34.615 0.00 0.00 36.24 3.16
333 334 6.183360 TGCAGGAATCTTTTTGGATTTTCAGT 60.183 34.615 0.00 0.00 36.24 3.41
334 335 6.225318 TGCAGGAATCTTTTTGGATTTTCAG 58.775 36.000 0.00 0.00 36.24 3.02
335 336 6.172136 TGCAGGAATCTTTTTGGATTTTCA 57.828 33.333 0.00 0.00 36.24 2.69
336 337 6.402875 GCATGCAGGAATCTTTTTGGATTTTC 60.403 38.462 14.21 0.00 36.24 2.29
337 338 5.413523 GCATGCAGGAATCTTTTTGGATTTT 59.586 36.000 14.21 0.00 36.24 1.82
338 339 4.939439 GCATGCAGGAATCTTTTTGGATTT 59.061 37.500 14.21 0.00 36.24 2.17
339 340 4.020039 TGCATGCAGGAATCTTTTTGGATT 60.020 37.500 18.46 0.00 38.47 3.01
340 341 3.516300 TGCATGCAGGAATCTTTTTGGAT 59.484 39.130 18.46 0.00 0.00 3.41
341 342 2.898612 TGCATGCAGGAATCTTTTTGGA 59.101 40.909 18.46 0.00 0.00 3.53
342 343 3.322211 TGCATGCAGGAATCTTTTTGG 57.678 42.857 18.46 0.00 0.00 3.28
343 344 4.857871 CATGCATGCAGGAATCTTTTTG 57.142 40.909 27.49 11.28 0.00 2.44
361 362 1.010462 CCACGTCATCGCATGCATG 60.010 57.895 22.70 22.70 41.18 4.06
362 363 2.827051 GCCACGTCATCGCATGCAT 61.827 57.895 19.57 7.64 41.18 3.96
363 364 3.498834 GCCACGTCATCGCATGCA 61.499 61.111 19.57 5.34 41.18 3.96
364 365 2.327002 ATTGCCACGTCATCGCATGC 62.327 55.000 7.91 7.91 41.18 4.06
365 366 0.316442 GATTGCCACGTCATCGCATG 60.316 55.000 0.00 0.00 41.18 4.06
366 367 0.462581 AGATTGCCACGTCATCGCAT 60.463 50.000 0.00 0.00 41.18 4.73
367 368 1.079197 AGATTGCCACGTCATCGCA 60.079 52.632 0.00 0.00 41.18 5.10
368 369 1.349627 CAGATTGCCACGTCATCGC 59.650 57.895 0.00 0.00 41.18 4.58
369 370 1.078709 AACAGATTGCCACGTCATCG 58.921 50.000 0.00 0.00 43.34 3.84
370 371 3.435327 TGTAAACAGATTGCCACGTCATC 59.565 43.478 0.00 0.00 0.00 2.92
371 372 3.407698 TGTAAACAGATTGCCACGTCAT 58.592 40.909 0.00 0.00 0.00 3.06
372 373 2.839975 TGTAAACAGATTGCCACGTCA 58.160 42.857 0.00 0.00 0.00 4.35
373 374 4.419522 AATGTAAACAGATTGCCACGTC 57.580 40.909 0.00 0.00 0.00 4.34
374 375 5.242434 TCTAATGTAAACAGATTGCCACGT 58.758 37.500 0.00 0.00 0.00 4.49
375 376 5.580691 TCTCTAATGTAAACAGATTGCCACG 59.419 40.000 0.00 0.00 0.00 4.94
376 377 6.455646 CGTCTCTAATGTAAACAGATTGCCAC 60.456 42.308 0.00 0.00 0.00 5.01
377 378 5.580691 CGTCTCTAATGTAAACAGATTGCCA 59.419 40.000 0.00 0.00 0.00 4.92
378 379 5.581085 ACGTCTCTAATGTAAACAGATTGCC 59.419 40.000 0.00 0.00 0.00 4.52
379 380 6.090898 ACACGTCTCTAATGTAAACAGATTGC 59.909 38.462 0.00 0.00 0.00 3.56
380 381 7.411912 CCACACGTCTCTAATGTAAACAGATTG 60.412 40.741 0.00 0.00 0.00 2.67
381 382 6.590292 CCACACGTCTCTAATGTAAACAGATT 59.410 38.462 0.00 0.00 0.00 2.40
382 383 6.100004 CCACACGTCTCTAATGTAAACAGAT 58.900 40.000 0.00 0.00 0.00 2.90
383 384 5.010314 ACCACACGTCTCTAATGTAAACAGA 59.990 40.000 0.00 0.00 0.00 3.41
384 385 5.118664 CACCACACGTCTCTAATGTAAACAG 59.881 44.000 0.00 0.00 0.00 3.16
385 386 4.986034 CACCACACGTCTCTAATGTAAACA 59.014 41.667 0.00 0.00 0.00 2.83
386 387 4.143179 GCACCACACGTCTCTAATGTAAAC 60.143 45.833 0.00 0.00 0.00 2.01
387 388 3.991773 GCACCACACGTCTCTAATGTAAA 59.008 43.478 0.00 0.00 0.00 2.01
388 389 3.581755 GCACCACACGTCTCTAATGTAA 58.418 45.455 0.00 0.00 0.00 2.41
389 390 2.414957 CGCACCACACGTCTCTAATGTA 60.415 50.000 0.00 0.00 0.00 2.29
390 391 1.668919 CGCACCACACGTCTCTAATGT 60.669 52.381 0.00 0.00 0.00 2.71
391 392 0.992072 CGCACCACACGTCTCTAATG 59.008 55.000 0.00 0.00 0.00 1.90
392 393 0.601558 ACGCACCACACGTCTCTAAT 59.398 50.000 0.00 0.00 40.28 1.73
393 394 2.035421 ACGCACCACACGTCTCTAA 58.965 52.632 0.00 0.00 40.28 2.10
394 395 3.754068 ACGCACCACACGTCTCTA 58.246 55.556 0.00 0.00 40.28 2.43
400 401 1.157870 AAAGGAAGACGCACCACACG 61.158 55.000 0.00 0.00 0.00 4.49
401 402 0.586802 GAAAGGAAGACGCACCACAC 59.413 55.000 0.00 0.00 0.00 3.82
402 403 0.468226 AGAAAGGAAGACGCACCACA 59.532 50.000 0.00 0.00 0.00 4.17
403 404 0.868406 CAGAAAGGAAGACGCACCAC 59.132 55.000 0.00 0.00 0.00 4.16
404 405 0.884704 GCAGAAAGGAAGACGCACCA 60.885 55.000 0.00 0.00 0.00 4.17
405 406 1.578206 GGCAGAAAGGAAGACGCACC 61.578 60.000 0.00 0.00 0.00 5.01
406 407 1.869690 GGCAGAAAGGAAGACGCAC 59.130 57.895 0.00 0.00 0.00 5.34
407 408 1.667830 CGGCAGAAAGGAAGACGCA 60.668 57.895 0.00 0.00 0.00 5.24
408 409 3.028366 GCGGCAGAAAGGAAGACGC 62.028 63.158 0.00 0.00 38.70 5.19
409 410 1.667830 TGCGGCAGAAAGGAAGACG 60.668 57.895 0.00 0.00 0.00 4.18
410 411 1.869690 GTGCGGCAGAAAGGAAGAC 59.130 57.895 1.18 0.00 0.00 3.01
411 412 1.667830 CGTGCGGCAGAAAGGAAGA 60.668 57.895 1.18 0.00 0.00 2.87
412 413 1.961277 ACGTGCGGCAGAAAGGAAG 60.961 57.895 1.18 0.00 0.00 3.46
413 414 2.110213 ACGTGCGGCAGAAAGGAA 59.890 55.556 1.18 0.00 0.00 3.36
414 415 2.664851 CACGTGCGGCAGAAAGGA 60.665 61.111 1.18 0.00 0.00 3.36
415 416 2.972505 ACACGTGCGGCAGAAAGG 60.973 61.111 17.22 0.00 0.00 3.11
416 417 2.243957 TCACACGTGCGGCAGAAAG 61.244 57.895 17.22 0.00 0.00 2.62
417 418 2.202946 TCACACGTGCGGCAGAAA 60.203 55.556 17.22 0.00 0.00 2.52
418 419 2.964925 GTCACACGTGCGGCAGAA 60.965 61.111 17.22 0.00 0.00 3.02
419 420 4.214327 TGTCACACGTGCGGCAGA 62.214 61.111 17.22 3.25 0.00 4.26
420 421 3.705638 CTGTCACACGTGCGGCAG 61.706 66.667 22.24 22.24 0.00 4.85
421 422 2.630592 TAACTGTCACACGTGCGGCA 62.631 55.000 17.22 13.79 0.00 5.69
422 423 1.886861 CTAACTGTCACACGTGCGGC 61.887 60.000 17.22 8.69 0.00 6.53
423 424 1.886861 GCTAACTGTCACACGTGCGG 61.887 60.000 17.22 8.61 0.00 5.69
424 425 1.487231 GCTAACTGTCACACGTGCG 59.513 57.895 17.22 6.29 0.00 5.34
425 426 1.487231 CGCTAACTGTCACACGTGC 59.513 57.895 17.22 0.00 0.00 5.34
426 427 1.487231 GCGCTAACTGTCACACGTG 59.513 57.895 15.48 15.48 0.00 4.49
427 428 2.014554 CGCGCTAACTGTCACACGT 61.015 57.895 5.56 0.00 0.00 4.49
428 429 1.728074 TCGCGCTAACTGTCACACG 60.728 57.895 5.56 0.00 0.00 4.49
429 430 1.615107 GGTCGCGCTAACTGTCACAC 61.615 60.000 5.56 0.00 0.00 3.82
430 431 1.372499 GGTCGCGCTAACTGTCACA 60.372 57.895 5.56 0.00 0.00 3.58
431 432 2.092882 GGGTCGCGCTAACTGTCAC 61.093 63.158 5.56 0.00 0.00 3.67
432 433 0.961857 TAGGGTCGCGCTAACTGTCA 60.962 55.000 5.56 0.00 0.00 3.58
433 434 0.171903 TTAGGGTCGCGCTAACTGTC 59.828 55.000 5.56 0.00 34.71 3.51
434 435 0.604578 TTTAGGGTCGCGCTAACTGT 59.395 50.000 5.56 0.00 38.32 3.55
435 436 1.593006 CATTTAGGGTCGCGCTAACTG 59.407 52.381 5.56 13.77 38.32 3.16
436 437 1.206371 ACATTTAGGGTCGCGCTAACT 59.794 47.619 5.56 0.50 38.32 2.24
437 438 1.648504 ACATTTAGGGTCGCGCTAAC 58.351 50.000 5.56 3.16 38.32 2.34
438 439 2.389962 AACATTTAGGGTCGCGCTAA 57.610 45.000 5.56 0.09 37.16 3.09
439 440 2.389962 AAACATTTAGGGTCGCGCTA 57.610 45.000 5.56 0.00 0.00 4.26
440 441 2.389962 TAAACATTTAGGGTCGCGCT 57.610 45.000 5.56 0.00 0.00 5.92
441 442 3.685836 AATAAACATTTAGGGTCGCGC 57.314 42.857 0.00 0.00 0.00 6.86
442 443 4.796312 CCAAAATAAACATTTAGGGTCGCG 59.204 41.667 0.00 0.00 0.00 5.87
443 444 5.803461 GTCCAAAATAAACATTTAGGGTCGC 59.197 40.000 0.00 0.00 0.00 5.19
444 445 7.153217 AGTCCAAAATAAACATTTAGGGTCG 57.847 36.000 0.00 0.00 0.00 4.79
464 465 2.014857 GCTGGGAAACGGAAATAGTCC 58.985 52.381 0.00 0.00 43.90 3.85
465 466 2.987232 AGCTGGGAAACGGAAATAGTC 58.013 47.619 0.00 0.00 0.00 2.59
466 467 4.514401 CTTAGCTGGGAAACGGAAATAGT 58.486 43.478 0.00 0.00 0.00 2.12
467 468 3.312697 GCTTAGCTGGGAAACGGAAATAG 59.687 47.826 0.00 0.00 0.00 1.73
468 469 3.275999 GCTTAGCTGGGAAACGGAAATA 58.724 45.455 0.00 0.00 0.00 1.40
469 470 2.092323 GCTTAGCTGGGAAACGGAAAT 58.908 47.619 0.00 0.00 0.00 2.17
470 471 1.202830 TGCTTAGCTGGGAAACGGAAA 60.203 47.619 5.60 0.00 0.00 3.13
471 472 0.398696 TGCTTAGCTGGGAAACGGAA 59.601 50.000 5.60 0.00 0.00 4.30
472 473 0.036388 CTGCTTAGCTGGGAAACGGA 60.036 55.000 5.60 0.00 0.00 4.69
473 474 0.321653 ACTGCTTAGCTGGGAAACGG 60.322 55.000 15.18 0.00 0.00 4.44
474 475 2.380084 TACTGCTTAGCTGGGAAACG 57.620 50.000 15.18 0.00 0.00 3.60
475 476 3.181496 GCATTACTGCTTAGCTGGGAAAC 60.181 47.826 15.18 3.36 45.32 2.78
476 477 3.016736 GCATTACTGCTTAGCTGGGAAA 58.983 45.455 15.18 7.06 45.32 3.13
477 478 2.643551 GCATTACTGCTTAGCTGGGAA 58.356 47.619 15.18 9.11 45.32 3.97
478 479 2.332063 GCATTACTGCTTAGCTGGGA 57.668 50.000 15.18 3.93 45.32 4.37
489 490 4.723794 CGCGTGTGTGCATTACTG 57.276 55.556 0.00 0.00 34.15 2.74
508 509 1.652167 GGTCCGACTACGTGGGAGTC 61.652 65.000 3.26 5.35 40.88 3.36
509 510 1.676967 GGTCCGACTACGTGGGAGT 60.677 63.158 3.26 0.00 40.88 3.85
510 511 2.758089 CGGTCCGACTACGTGGGAG 61.758 68.421 4.91 0.00 40.88 4.30
511 512 2.747460 CGGTCCGACTACGTGGGA 60.747 66.667 4.91 0.00 38.07 4.37
512 513 4.487412 GCGGTCCGACTACGTGGG 62.487 72.222 17.49 0.00 37.88 4.61
513 514 3.740397 TGCGGTCCGACTACGTGG 61.740 66.667 17.49 0.00 37.88 4.94
514 515 2.503375 GTGCGGTCCGACTACGTG 60.503 66.667 17.49 0.00 37.88 4.49
515 516 4.093952 CGTGCGGTCCGACTACGT 62.094 66.667 17.49 0.00 37.88 3.57
552 553 0.176680 AATCTGCTTCGGCGACTGAT 59.823 50.000 10.16 11.44 45.37 2.90
577 578 1.533994 AAAAGCAGGGGAAGGCACC 60.534 57.895 0.00 0.00 38.12 5.01
642 643 0.394352 AAGCTTTCGTGGGGGCATAG 60.394 55.000 0.00 0.00 0.00 2.23
706 709 4.336153 AGGTTTTTCTTTTTCTTCCGCGTA 59.664 37.500 4.92 0.00 0.00 4.42
709 712 4.049186 GGAGGTTTTTCTTTTTCTTCCGC 58.951 43.478 0.00 0.00 0.00 5.54
711 714 4.098960 ACGGGAGGTTTTTCTTTTTCTTCC 59.901 41.667 0.00 0.00 0.00 3.46
713 716 4.098960 GGACGGGAGGTTTTTCTTTTTCTT 59.901 41.667 0.00 0.00 0.00 2.52
714 717 3.635373 GGACGGGAGGTTTTTCTTTTTCT 59.365 43.478 0.00 0.00 0.00 2.52
715 718 3.549423 CGGACGGGAGGTTTTTCTTTTTC 60.549 47.826 0.00 0.00 0.00 2.29
716 719 2.359848 CGGACGGGAGGTTTTTCTTTTT 59.640 45.455 0.00 0.00 0.00 1.94
717 720 1.951602 CGGACGGGAGGTTTTTCTTTT 59.048 47.619 0.00 0.00 0.00 2.27
718 721 1.141455 TCGGACGGGAGGTTTTTCTTT 59.859 47.619 0.00 0.00 0.00 2.52
757 770 0.241749 GTGGTCATCGTGGACGTACA 59.758 55.000 0.00 0.00 38.70 2.90
781 794 0.399806 AGGGAGGAAGGAGAGATGCC 60.400 60.000 0.00 0.00 0.00 4.40
793 806 1.573607 TTCATGGCATGCAGGGAGGA 61.574 55.000 22.56 4.28 0.00 3.71
833 849 2.490509 CGTGTGCATATATACTCGGGGA 59.509 50.000 0.00 0.00 32.17 4.81
893 910 3.639094 TCCTAGATCCTCTGCTTTGCTAC 59.361 47.826 0.00 0.00 0.00 3.58
938 957 2.221055 GGTGAACTAGACGCTGTTTGTG 59.779 50.000 0.00 0.00 0.00 3.33
944 963 0.038526 AACCGGTGAACTAGACGCTG 60.039 55.000 8.52 2.05 0.00 5.18
1092 1111 2.044650 AGAGTTGCCCGCATGCAT 60.045 55.556 19.57 0.00 41.70 3.96
1176 1202 4.383861 TCAGCCTCGCACAGCAGG 62.384 66.667 0.00 0.00 32.70 4.85
1269 1306 3.382832 CCGAACGCCTCCCTCAGT 61.383 66.667 0.00 0.00 0.00 3.41
1392 4302 3.296836 TCGAGGTCGAACCGGCAA 61.297 61.111 0.00 0.00 46.30 4.52
2045 5806 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2046 5807 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2047 5808 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2049 5810 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2050 5811 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2052 5813 1.598882 TTGTGTGTGTGTGTGTGTGT 58.401 45.000 0.00 0.00 0.00 3.72
2053 5814 2.287248 TGTTTGTGTGTGTGTGTGTGTG 60.287 45.455 0.00 0.00 0.00 3.82
2055 5816 2.695613 TGTTTGTGTGTGTGTGTGTG 57.304 45.000 0.00 0.00 0.00 3.82
2057 5818 3.181377 GTGTTTGTTTGTGTGTGTGTGTG 59.819 43.478 0.00 0.00 0.00 3.82
2058 5819 3.181486 TGTGTTTGTTTGTGTGTGTGTGT 60.181 39.130 0.00 0.00 0.00 3.72
2059 5820 3.181377 GTGTGTTTGTTTGTGTGTGTGTG 59.819 43.478 0.00 0.00 0.00 3.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.